BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022676
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AKO|A Chain A, Exonuclease Iii From Escherichia Coli
Length = 268
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 168 ETEVEDDILP----------IFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLT 217
ET+V DD+ P +F G+ ++GV + + I G P +D + +
Sbjct: 34 ETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIM 93
Query: 218 AEFPSLIVQSTQGSNFNLSSEIYTHAV 244
AE PSL+ T + + E H +
Sbjct: 94 AEIPSLLGNVTVINGYFPQGESRDHPI 120
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 116 ISNENVENYTHGVFMRFQRKEHLVKF 141
I+ EN E+YTH V QRK H K+
Sbjct: 150 ITIENTEHYTHLVMKNVQRKTHAGKY 175
>pdb|4F5F|A Chain A, Structure Of Aspartate Aminotransferase Conversion To
Tyrosine Aminotransferase: Chimera P1.
pdb|4F5F|B Chain B, Structure Of Aspartate Aminotransferase Conversion To
Tyrosine Aminotransferase: Chimera P1
Length = 406
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 194 LISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSE 238
LI F FG E+ E L+ A LIV S+ NF L +E
Sbjct: 219 LIDFAYQGFGRGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNE 263
>pdb|4F5H|A Chain A, Intercoversion Of Substrate Specificity: E. Coli Aspatate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P3.
pdb|4F5H|B Chain B, Intercoversion Of Substrate Specificity: E. Coli Aspatate
Aminotransferase To Tyrosine Aminotransferase: Chimera
P3
Length = 406
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 194 LISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSE 238
LI F FG E+ E L+ A LIV S+ NF L +E
Sbjct: 219 LIDFAYQGFGRGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNE 263
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 17/122 (13%)
Query: 72 KVVEHIC--LLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENV----ENYT 125
K VE + LLK K++ +E+ + +G ++A ++ ++ NE V E+ T
Sbjct: 79 KAVEKVTETLLKGAKEVETKEQIAATAAISAGDQSIGDLIAEAMDKVGNEGVITVEESNT 138
Query: 126 HGV------FMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIF 179
G+ MRF + F +P + + E PY ++ V + D+LP+
Sbjct: 139 FGLQLELTEGMRFDKGYISGYFVTDPERQEAVLED--PY---ILLVSSKVSTVKDLLPLL 193
Query: 180 RK 181
K
Sbjct: 194 EK 195
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 137 HLVKFYENP--FYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLL 194
L+ EN F + LK VM ++N+D+ETEV+ + I R + F F
Sbjct: 171 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKK 230
Query: 195 ISFIQ-SAFGGPAEDALES 212
+ +Q +A P + A+ S
Sbjct: 231 VQKLQRAALKNPVKCAVSS 249
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 17/122 (13%)
Query: 72 KVVEHIC--LLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENV----ENYT 125
K VE + LLK K++ +E+ + +G ++A ++ ++ NE V E+ T
Sbjct: 121 KAVEKVTETLLKGAKEVETKEQIAATAAISAGDQSIGDLIAEAMDKVGNEGVITVEESNT 180
Query: 126 HGV------FMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIF 179
G+ MRF + F +P + + E PY ++ V + D+LP+
Sbjct: 181 FGLQLELTEGMRFDKGYISGYFVTDPERQEAVLED--PY---ILLVSSKVSTVKDLLPLL 235
Query: 180 RK 181
K
Sbjct: 236 EK 237
>pdb|3ZZJ|A Chain A, Structure Of An Engineered Aspartate Aminotransferase
pdb|3ZZK|A Chain A, Structure Of An Engineered Aspartate Aminotransferase
pdb|4A00|A Chain A, Structure Of An Engineered Aspartate Aminotransferase
Length = 396
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 194 LISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSE 238
L F Q F E+ E L+ A LIV S+ NF L +E
Sbjct: 209 LFDFAQQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNE 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,203,838
Number of Sequences: 62578
Number of extensions: 310246
Number of successful extensions: 823
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 18
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)