Query 022676
Match_columns 293
No_of_seqs 230 out of 803
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:19:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07876 Dabb: Stress responsi 99.9 3.4E-25 7.3E-30 173.9 12.9 95 74-169 1-97 (97)
2 PF07876 Dabb: Stress responsi 99.9 3.6E-25 7.8E-30 173.7 12.1 95 189-285 1-97 (97)
3 PF03992 ABM: Antibiotic biosy 97.8 0.00029 6.4E-09 51.7 10.1 77 73-152 1-77 (78)
4 PF03992 ABM: Antibiotic biosy 96.8 0.012 2.6E-07 43.0 8.7 75 188-267 1-76 (78)
5 COG1359 Uncharacterized conser 95.8 0.23 5.1E-06 39.4 11.7 91 188-285 1-94 (100)
6 PF11639 HapK: REDY-like prote 94.5 0.4 8.7E-06 39.0 9.1 79 76-154 4-83 (104)
7 COG1359 Uncharacterized conser 92.6 2.8 6E-05 33.2 11.1 89 73-165 1-90 (100)
8 PRK10486 autoinducer-2 (AI-2) 92.3 2.9 6.3E-05 32.8 10.8 84 74-162 2-85 (96)
9 PRK10486 autoinducer-2 (AI-2) 92.0 2.1 4.7E-05 33.6 9.7 83 190-278 3-85 (96)
10 COG2329 Uncharacterized enzyme 91.5 4.7 0.0001 32.5 11.3 71 81-153 10-80 (105)
11 PF01037 AsnC_trans_reg: AsnC 90.7 2 4.4E-05 31.1 7.8 53 78-142 1-53 (74)
12 COG2329 Uncharacterized enzyme 90.5 5.1 0.00011 32.3 10.6 75 202-278 15-89 (105)
13 COG5470 Uncharacterized conser 86.5 7 0.00015 31.5 8.6 79 88-166 15-94 (96)
14 TIGR02118 conserved hypothetic 85.2 11 0.00023 29.7 9.3 71 82-153 8-81 (100)
15 PRK13314 heme-degrading monoox 84.9 6.6 0.00014 32.1 8.1 70 80-152 8-77 (107)
16 PF07045 DUF1330: Protein of u 83.6 5 0.00011 29.3 6.2 29 122-150 36-64 (65)
17 PRK13312 heme-degrading monoox 83.3 5.2 0.00011 32.8 6.8 68 80-151 9-77 (107)
18 PF07045 DUF1330: Protein of u 82.6 5.1 0.00011 29.3 6.0 29 238-266 36-64 (65)
19 COG5470 Uncharacterized conser 82.2 16 0.00035 29.4 9.0 86 192-282 7-94 (96)
20 PRK13315 heme-degrading monoox 77.3 19 0.00041 29.5 8.2 72 77-152 5-77 (107)
21 PRK13313 heme-degrading monoox 74.8 21 0.00045 29.3 7.8 70 79-152 7-77 (108)
22 TIGR02118 conserved hypothetic 73.9 34 0.00074 26.7 8.8 74 201-276 11-87 (100)
23 PRK13316 heme-degrading monoox 72.7 28 0.0006 29.2 8.2 72 80-152 8-85 (121)
24 COG3224 Uncharacterized protei 72.4 28 0.00061 31.3 8.5 78 73-153 10-87 (195)
25 PF13826 DUF4188: Domain of un 64.6 9.6 0.00021 31.7 3.8 34 240-273 51-84 (117)
26 PRK13314 heme-degrading monoox 63.1 78 0.0017 25.8 8.9 84 195-285 8-96 (107)
27 PF07110 EthD: EthD domain; I 62.7 62 0.0013 24.1 8.3 32 120-151 53-84 (95)
28 PF01037 AsnC_trans_reg: AsnC 62.2 28 0.00061 24.9 5.6 54 193-259 1-54 (74)
29 PF11695 DUF3291: Domain of un 58.5 1.2E+02 0.0026 26.0 11.2 120 81-228 8-135 (140)
30 PRK13316 heme-degrading monoox 55.6 1.2E+02 0.0027 25.4 9.5 68 195-268 8-85 (121)
31 PRK13315 heme-degrading monoox 55.2 1.1E+02 0.0024 24.9 8.5 67 195-268 8-77 (107)
32 PRK13312 heme-degrading monoox 54.2 48 0.001 27.2 6.2 66 195-268 9-78 (107)
33 PRK06423 phosphoribosylformylg 53.7 37 0.00079 25.5 5.1 40 75-116 2-41 (73)
34 PRK11179 DNA-binding transcrip 48.8 94 0.002 26.2 7.5 57 73-142 68-124 (153)
35 PF13826 DUF4188: Domain of un 46.9 80 0.0017 26.2 6.5 33 123-155 50-82 (117)
36 PRK13313 heme-degrading monoox 43.9 1.2E+02 0.0027 24.8 7.1 66 195-268 8-77 (108)
37 PRK11169 leucine-responsive tr 42.7 1.5E+02 0.0033 25.3 7.9 59 73-142 73-131 (164)
38 CHL00123 rps6 ribosomal protei 40.1 1.7E+02 0.0037 23.1 7.3 56 193-248 10-67 (97)
39 TIGR00302 phosphoribosylformyl 38.8 86 0.0019 23.9 5.2 40 75-116 2-41 (80)
40 COG3224 Uncharacterized protei 38.0 2.5E+02 0.0054 25.4 8.5 81 193-280 15-97 (195)
41 PF02700 PurS: Phosphoribosylf 36.2 1.2E+02 0.0025 23.4 5.5 38 77-116 4-41 (80)
42 PF14114 DUF4286: Domain of un 34.0 1.7E+02 0.0036 23.1 6.3 63 87-149 9-78 (98)
43 PF08803 ydhR: Putative mono-o 33.0 2.6E+02 0.0057 22.6 9.3 60 82-145 6-66 (97)
44 PF13341 RAG2_PHD: RAG2 PHD do 31.6 32 0.0007 26.3 1.7 31 27-60 7-37 (78)
45 PRK06423 phosphoribosylformylg 31.0 1.4E+02 0.003 22.3 5.1 40 190-232 2-41 (73)
46 PRK09565 hypothetical protein; 30.7 1.4E+02 0.003 31.0 6.5 80 78-162 447-526 (533)
47 KOG2591 c-Mpl binding protein, 29.7 90 0.002 32.8 5.0 84 190-290 175-260 (684)
48 PF07110 EthD: EthD domain; I 29.4 1.9E+02 0.004 21.4 5.7 37 236-272 53-89 (95)
49 smart00878 Biotin_carb_C Bioti 29.0 46 0.001 27.0 2.4 66 20-101 8-75 (107)
50 TIGR03792 uncharacterized cyan 28.2 3E+02 0.0066 21.8 7.1 66 77-145 4-69 (90)
51 PF11349 DUF3151: Protein of u 27.5 19 0.00042 30.4 -0.1 16 9-28 79-94 (129)
52 PF08803 ydhR: Putative mono-o 25.8 3.6E+02 0.0078 21.8 7.9 50 207-261 14-66 (97)
53 PF07978 NIPSNAP: NIPSNAP ; I 24.1 2.5E+02 0.0054 21.2 5.7 73 77-153 3-80 (102)
54 PF02585 PIG-L: GlcNAc-PI de-N 23.7 3.5E+02 0.0075 21.5 6.7 55 188-268 66-122 (128)
55 TIGR00302 phosphoribosylformyl 23.6 2.2E+02 0.0047 21.6 5.1 40 190-232 2-41 (80)
56 cd00468 HIT_like HIT family: H 22.5 1.8E+02 0.0039 21.2 4.4 43 191-235 20-71 (86)
57 PF02785 Biotin_carb_C: Biotin 22.0 1.1E+02 0.0023 24.9 3.3 66 20-101 8-75 (107)
58 PRK05974 phosphoribosylformylg 21.6 2E+02 0.0043 21.8 4.5 36 78-115 5-40 (80)
59 PRK12864 YciI-like protein; Re 20.5 4E+02 0.0087 20.5 8.0 68 75-149 3-74 (89)
60 PF13816 Dehydratase_hem: Haem 20.4 5.5E+02 0.012 24.8 8.3 85 72-156 174-272 (310)
61 TIGR00589 ogt O-6-methylguanin 20.4 34 0.00075 26.3 0.0 31 2-37 38-68 (80)
No 1
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=99.93 E-value=3.4e-25 Score=173.86 Aligned_cols=95 Identities=27% Similarity=0.466 Sum_probs=90.1
Q ss_pred EEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCC--CCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676 74 VEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENV--ENYTHGVFMRFQRKEHLVKFYENPFYSKVL 151 (293)
Q Consensus 74 I~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~--~gythaL~s~F~s~edL~~Y~~HP~H~~vv 151 (293)
|+|||+||||++++++++++++++|.+|+++||||+++++|++.+++. +||||+|+++|+|++||++|++||+|++++
T Consensus 1 I~Hivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~~hp~H~~~~ 80 (97)
T PF07876_consen 1 IRHIVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQTHPAHQAFV 80 (97)
T ss_dssp EEEEEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHHTSHHHHHHH
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHHcCHHHHHHH
Confidence 799999999999999999999999999999999999999999999865 899999999999999999999999999998
Q ss_pred HHhhccceeeeeeeeeec
Q 022676 152 KEHVMPYCHGLMNVDYET 169 (293)
Q Consensus 152 ~~~i~p~~e~~~vvDye~ 169 (293)
++++|++++++++||+.
T Consensus 81 -~~~~p~~~~~~~~D~~V 97 (97)
T PF07876_consen 81 -EFLKPILEDRIVFDFEV 97 (97)
T ss_dssp -HHHHGGEEEEEEEEEEE
T ss_pred -HHHHHHhCceEEEEEEC
Confidence 67899999999999974
No 2
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=99.93 E-value=3.6e-25 Score=173.70 Aligned_cols=95 Identities=24% Similarity=0.429 Sum_probs=90.7
Q ss_pred eeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCC--CCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676 189 VEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSS--EIYTHAVVIRLRSVEAFEMFVGSSDYKEM 266 (293)
Q Consensus 189 i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~--kGythafv~~F~s~eald~Y~~hp~H~~~ 266 (293)
|+|||+||||+++++++++++++.|.+|++++|| |+++++|.|.++.. +|||||++++|+|.+|+++|+.||.|+++
T Consensus 1 I~Hivlfklk~~~~~~~~~~~~~~l~~l~~~ip~-i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~~hp~H~~~ 79 (97)
T PF07876_consen 1 IRHIVLFKLKPDATEEEIEEVLEALRALKDKIPG-IVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQTHPAHQAF 79 (97)
T ss_dssp EEEEEEEEESTTTCHHHHHHHHHHHHHHHHHSTT-ECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHHTSHHHHHH
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHhcccCCCc-eEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHHcCHHHHHH
Confidence 7899999999999999999999999999999999 99999999999964 99999999999999999999999999996
Q ss_pred HHhhhhccccceeEEeeEe
Q 022676 267 WSNKFQPIIRTQLPVHFSV 285 (293)
Q Consensus 267 ~~~~v~p~~e~i~vvDy~v 285 (293)
. +.++|++++++++||+|
T Consensus 80 ~-~~~~p~~~~~~~~D~~V 97 (97)
T PF07876_consen 80 V-EFLKPILEDRIVFDFEV 97 (97)
T ss_dssp H-HHHHGGEEEEEEEEEEE
T ss_pred H-HHHHHHhCceEEEEEEC
Confidence 5 89999999999999986
No 3
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=97.82 E-value=0.00029 Score=51.74 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=63.4
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676 73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK 152 (293)
Q Consensus 73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~ 152 (293)
||.-|+.+++|++..++-++.+.+....+..+.||.+...+.++.. ++-.+.++..++|.++++++..+|.|+++.+
T Consensus 1 Mi~v~~~~~v~~~~~~~f~~~~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~~~~~~~W~s~~a~~~~~~s~~~~~~~~ 77 (78)
T PF03992_consen 1 MITVIVKFKVKPGKEEEFLAAFQELAEATLRKEPGCLSYELYRSLD---DPNRYVIVERWESEEAFQAHFKSPEFKAFQE 77 (78)
T ss_dssp EEEEEEEEEEETTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEESS---STTEEEEEEEESSHHHHHHHHTSHHHHHHHH
T ss_pred CEEEEEEEEeCcchHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC---CCCEEEEEEEECCHHHHHHHHcCHHHHHHHh
Confidence 7888999999998876666665555555766799999999998553 3456999999999999999999999998753
No 4
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=96.81 E-value=0.012 Score=42.98 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=55.9
Q ss_pred ceeEEEEEEecCCCCCChHHHHHHHHHH-hhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676 188 GVEFVLLISFIQSAFGGPAEDALESLKR-LTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEM 266 (293)
Q Consensus 188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~-Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~ 266 (293)
||.-|+.++.+++...+ ..+.++.+.. +.++.|| .+++....+... .=...++..++|.++++++..+|.|++.
T Consensus 1 Mi~v~~~~~v~~~~~~~-f~~~~~~~~~~~~~~~~G-~~~~~~~~~~~~---~~~~~~~~~W~s~~a~~~~~~s~~~~~~ 75 (78)
T PF03992_consen 1 MITVIVKFKVKPGKEEE-FLAAFQELAEATLRKEPG-CLSYELYRSLDD---PNRYVIVERWESEEAFQAHFKSPEFKAF 75 (78)
T ss_dssp EEEEEEEEEEETTGHHH-HHHHHHHHHHHHHHTSTT-EEEEEEEEESSS---TTEEEEEEEESSHHHHHHHHTSHHHHHH
T ss_pred CEEEEEEEEeCcchHHH-HHHHHHHHHHHHHhcCCC-cEEEEEEEecCC---CCEEEEEEEECCHHHHHHHHcCHHHHHH
Confidence 67788889988876633 3333444433 6567899 999999985432 2347799999999999999999999875
Q ss_pred H
Q 022676 267 W 267 (293)
Q Consensus 267 ~ 267 (293)
.
T Consensus 76 ~ 76 (78)
T PF03992_consen 76 Q 76 (78)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>COG1359 Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.23 Score=39.42 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=65.7
Q ss_pred ceeEEEEEEecCCCCCChHHHHHHHHHHhhh---hcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHH
Q 022676 188 GVEFVLLISFIQSAFGGPAEDALESLKRLTA---EFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYK 264 (293)
Q Consensus 188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~---~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~ 264 (293)
|+.+++..+|+. .++.++++.+.+..|.. +=|| .+++.+-.+.. ..=++-++-.++|.++++.....| |.
T Consensus 1 ~~~i~~~~~~~~--~~~~~~~~~~~~~~lv~~sr~EeG-cl~Y~l~~d~~---~~~~~~~~E~w~d~~A~~~H~~s~-h~ 73 (100)
T COG1359 1 MLMVIVLARFKP--KPGHREEFLDLLAELVEASRAEEG-CLSYELHRDPD---NPGRFVLIEVWEDEAALDAHLQSP-HF 73 (100)
T ss_pred CcEEEEEEEEEe--CcchHHHHHHHHHHHHHHhccCCC-ceEEEEEEeCC---CCCEEEEEEEECCHHHHHHHhCCH-HH
Confidence 345677778875 33445666555555555 3489 99999998875 234567889999999999999999 55
Q ss_pred HHHHhhhhccccceeEEeeEe
Q 022676 265 EMWSNKFQPIIRTQLPVHFSV 285 (293)
Q Consensus 265 ~~~~~~v~p~~e~i~vvDy~v 285 (293)
+.+.+.+.+++.....+....
T Consensus 74 ~~~~~~~~~l~~~~~~i~~~~ 94 (100)
T COG1359 74 QAFVAALPPLLAGPPEIRVLE 94 (100)
T ss_pred HHHHHhChHhhcCCcEEEEEe
Confidence 568889999988755544433
No 6
>PF11639 HapK: REDY-like protein HapK; InterPro: IPR021667 This family of proteins represents HapK, a protein of unknown function, with two homologues PigK and RedY. The monomer structure of the protein contains a four-stranded anti parallel beta-sheet, three alpha-helices and a short C-terminal tail which it uses for dimer formation []. The surface of HapK has a deep cavity with consists of a kinked helix and a beta-four strand. HapK could be involved in prodigiosin biosynthesis, specifically the binding of a bipyrrole intermediate such as HBM or MBM []. ; PDB: 2JDJ_B.
Probab=94.49 E-value=0.4 Score=39.04 Aligned_cols=79 Identities=10% Similarity=0.149 Sum_probs=60.2
Q ss_pred EEEEEEecCCCCHHHHHHHHHHH-HhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHHHh
Q 022676 76 HICLLKAKKDLSEEEEKDMLDYL-YTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEH 154 (293)
Q Consensus 76 HIVlfK~K~~~s~e~~~~~~~~L-~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~~ 154 (293)
=|++++||++++++..+.+.+.- ......+|.|+++++-+..+...-.|++.=+.+..|.+++..=..-+.-++++..|
T Consensus 4 IV~~i~Lk~gv~~~~fe~Wv~~tDy~tc~~L~sV~sF~V~r~s~~~~aPy~YiEiI~V~d~~~F~~dm~t~~fq~l~~~F 83 (104)
T PF11639_consen 4 IVHLIRLKDGVDPAAFERWVRETDYPTCPSLPSVRSFEVHRASSEADAPYHYIEIIDVSDMDAFGRDMATETFQRLVAEF 83 (104)
T ss_dssp EEEEEEES-GGGHHHHHHHHHHTHHHHGGG-TTEEEEEEEE----TT-S-SEEEEEEES-HHHHHHHHTSHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHhcchhcccCCCceeeEEEEEccCCCCCCccEEEEEecCCHHHHHHHhccHHHHHHHHHH
Confidence 47899999999999988887654 34556699999999998766555679999999999999999888999999998876
No 7
>COG1359 Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=2.8 Score=33.20 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=61.8
Q ss_pred cEEEEEEEEecCCCC-HHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676 73 VVEHICLLKAKKDLS-EEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL 151 (293)
Q Consensus 73 mI~HIVlfK~K~~~s-~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv 151 (293)
|+.+++..+++..-. .++..+.+..+.+--.+=+|=+.+.+.++.. ..-.+.++=.+.|.+++++....|.-+++.
T Consensus 1 ~~~i~~~~~~~~~~~~~~~~~~~~~~lv~~sr~EeGcl~Y~l~~d~~---~~~~~~~~E~w~d~~A~~~H~~s~h~~~~~ 77 (100)
T COG1359 1 MLMVIVLARFKPKPGHREEFLDLLAELVEASRAEEGCLSYELHRDPD---NPGRFVLIEVWEDEAALDAHLQSPHFQAFV 77 (100)
T ss_pred CcEEEEEEEEEeCcchHHHHHHHHHHHHHHhccCCCceEEEEEEeCC---CCCEEEEEEEECCHHHHHHHhCCHHHHHHH
Confidence 456677777765432 2333333333333223358999999998874 356788999999999999999999999998
Q ss_pred HHhhccceeeeeee
Q 022676 152 KEHVMPYCHGLMNV 165 (293)
Q Consensus 152 ~~~i~p~~e~~~vv 165 (293)
++ +.+...+...+
T Consensus 78 ~~-~~~l~~~~~~i 90 (100)
T COG1359 78 AA-LPPLLAGPPEI 90 (100)
T ss_pred Hh-ChHhhcCCcEE
Confidence 76 56776664433
No 8
>PRK10486 autoinducer-2 (AI-2) modifying protein LsrG; Provisional
Probab=92.33 E-value=2.9 Score=32.83 Aligned_cols=84 Identities=11% Similarity=0.126 Sum_probs=59.6
Q ss_pred EEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHHH
Q 022676 74 VEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKE 153 (293)
Q Consensus 74 I~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~ 153 (293)
..=|+-++.|++- .++..+.+..+.....+=||-+.+.+..+.. +.-...++=+++|.++|++....|.-+++.++
T Consensus 2 ~~~ia~~~~kpg~-~~~~~~~l~~~~~~sr~EpGcl~y~~~~~~~---~p~~~~~~E~w~d~~Al~~H~~tph~k~f~~~ 77 (96)
T PRK10486 2 HVTLVEINVKEDK-VDEFIEVFRQNHLGSIQEPGNLRFDVLQDPE---VPTRFYIYEAYKDEAAVAFHKTTPHYKTCVEK 77 (96)
T ss_pred EEEEEEEEECcch-HHHHHHHHHHHHHHHhCCCCceEEEEEeCCC---CCCEEEEEEEeCCHHHHHHHhcCHHHHHHHHH
Confidence 3445667777774 3334444444443333469999999988753 46788999999999999999999999999876
Q ss_pred hhccceeee
Q 022676 154 HVMPYCHGL 162 (293)
Q Consensus 154 ~i~p~~e~~ 162 (293)
. .+.+.+-
T Consensus 78 ~-~~ll~~~ 85 (96)
T PRK10486 78 L-EPLMTGP 85 (96)
T ss_pred H-HHHHhCC
Confidence 4 5555543
No 9
>PRK10486 autoinducer-2 (AI-2) modifying protein LsrG; Provisional
Probab=92.03 E-value=2.1 Score=33.60 Aligned_cols=83 Identities=6% Similarity=-0.019 Sum_probs=56.7
Q ss_pred eEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHHh
Q 022676 190 EFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSN 269 (293)
Q Consensus 190 ~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~~ 269 (293)
.=|+.++.|++. .++..+++..+..-..+=|| .+.+.+..+.. +.=...|+=.+.|.++++.....| |-+.+.+
T Consensus 3 ~~ia~~~~kpg~-~~~~~~~l~~~~~~sr~EpG-cl~y~~~~~~~---~p~~~~~~E~w~d~~Al~~H~~tp-h~k~f~~ 76 (96)
T PRK10486 3 VTLVEINVKEDK-VDEFIEVFRQNHLGSIQEPG-NLRFDVLQDPE---VPTRFYIYEAYKDEAAVAFHKTTP-HYKTCVE 76 (96)
T ss_pred EEEEEEEECcch-HHHHHHHHHHHHHHHhCCCC-ceEEEEEeCCC---CCCEEEEEEEeCCHHHHHHHhcCH-HHHHHHH
Confidence 345566667653 23333333333333334499 99999888753 345677999999999999999999 5555778
Q ss_pred hhhccccce
Q 022676 270 KFQPIIRTQ 278 (293)
Q Consensus 270 ~v~p~~e~i 278 (293)
.+.++++.-
T Consensus 77 ~~~~ll~~~ 85 (96)
T PRK10486 77 KLEPLMTGP 85 (96)
T ss_pred HHHHHHhCC
Confidence 888888754
No 10
>COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]
Probab=91.45 E-value=4.7 Score=32.52 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=51.1
Q ss_pred EecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHHH
Q 022676 81 KAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKE 153 (293)
Q Consensus 81 K~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~ 153 (293)
+++++. +++..+.......+.+.+||.+++++=+.... .++-.+++++..+|.+|..+...++.|.+.-+.
T Consensus 10 ~v~~g~-~~~fe~~f~~~~~~~~~~~Gf~~~~llr~~~~-~~~~~~~vvt~WeS~eaf~~W~~s~~~~~ah~~ 80 (105)
T COG2329 10 AVKEGA-EEEFEERFANRAGLLEEMPGFIGFELLRPKTV-EDPDEYVVVTRWESEEAFKAWRKSDEFKEAHKA 80 (105)
T ss_pred ecCCCc-HHHHHHHHHHHHhhhhcCCCceEEEEeecCcc-CCCceEEEEEEECCHHHHHhHhcCHHHHHHHHh
Confidence 344443 34555555666666667999999998876431 233348889999999999999999999985543
No 11
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=90.70 E-value=2 Score=31.07 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=40.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhc
Q 022676 78 CLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFY 142 (293)
Q Consensus 78 VlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~ 142 (293)
|+.+++++. +..+++.+.|.+ +|+|..+..- ++.||+.+.+.+.|.++|+.+.
T Consensus 1 V~V~~~~~~--~~~~~~~~~l~~----~p~V~~~~~v------tG~~d~~~~v~~~d~~~l~~~i 53 (74)
T PF01037_consen 1 VLVKVEPGH--DAYDEFAEALAE----IPEVVECYSV------TGEYDLILKVRARDMEELEEFI 53 (74)
T ss_dssp EEEEESTTG--THHHHHHHHHHT----STTEEEEEEE------SSSSSEEEEEEESSHHHHHHHH
T ss_pred CEEEEcCCC--chHHHHHHHHHc----CCCEEEEEEE------eCCCCEEEEEEECCHHHHHHHH
Confidence 566776555 556777777776 7999887533 4579999999999999999874
No 12
>COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]
Probab=90.47 E-value=5.1 Score=32.32 Aligned_cols=75 Identities=20% Similarity=0.162 Sum_probs=54.8
Q ss_pred CCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHHhhhhccccce
Q 022676 202 FGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQ 278 (293)
Q Consensus 202 s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~~~v~p~~e~i 278 (293)
..++.++.......+-+.+|| .++++.=.+.. ...+=...+++..+|.+|..+...+++|+++.+..-..++.+.
T Consensus 15 ~~~~fe~~f~~~~~~~~~~~G-f~~~~llr~~~-~~~~~~~~vvt~WeS~eaf~~W~~s~~~~~ah~~~~~~~~~~~ 89 (105)
T COG2329 15 AEEEFEERFANRAGLLEEMPG-FIGFELLRPKT-VEDPDEYVVVTRWESEEAFKAWRKSDEFKEAHKAGRSNYISGP 89 (105)
T ss_pred cHHHHHHHHHHHHhhhhcCCC-ceEEEEeecCc-cCCCceEEEEEEECCHHHHHhHhcCHHHHHHHHhcccccccCc
Confidence 345666777777777778999 88888665543 2233347888899999999999999999998776555545543
No 13
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=86.50 E-value=7 Score=31.50 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCc-cEEEEEEECCHHHHHhhccCcchHHHHHHhhccceeeeeeee
Q 022676 88 EEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENY-THGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVD 166 (293)
Q Consensus 88 ~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gy-thaL~s~F~s~edL~~Y~~HP~H~~vv~~~i~p~~e~~~vvD 166 (293)
.+..++-.........+--|=--++.|......+... +-.++++|+|.++.....+.|+.+++++..-...-...++||
T Consensus 15 ~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~SpeYq~a~~~Rq~~ad~~~iiVe 94 (96)
T COG5470 15 PEQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYNSPEYQAAAAIRQAAADSEIIIVE 94 (96)
T ss_pred HHHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhcCHHHHHHHHHHhhcccccEEEEe
Confidence 4555555555555544444433344444333333333 789999999999999999999999988765433333444444
No 14
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=85.24 E-value=11 Score=29.66 Aligned_cols=71 Identities=10% Similarity=0.095 Sum_probs=50.3
Q ss_pred ecCCCCHHHHHH-HHHHHHhhhhcCCceEEEEEeecCC--CCCCCccEEEEEEECCHHHHHhhccCcchHHHHHH
Q 022676 82 AKKDLSEEEEKD-MLDYLYTSQYQMGGIVAISLGRISN--ENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKE 153 (293)
Q Consensus 82 ~K~~~s~e~~~~-~~~~L~~L~~~IPgv~~i~~G~~~s--~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~ 153 (293)
=|+ .+.++... ..+.=..|..++||++......... +....||-+..+.|+|.|++++-...|+-+++.+.
T Consensus 8 r~p-~~~e~F~~yy~~~H~pL~~~~pg~~~y~~~~~~~~~~~~~~~d~i~el~Fds~e~~~~a~~sp~~~~~~~D 81 (100)
T TIGR02118 8 EQP-EDGAAFDHHYRDTHVPLAQKLPGLRRYAVDKIVSGLPGSSPYYGMCELYFDSIEDFQAAFDSPEGKAAAAD 81 (100)
T ss_pred CCC-CCHHHHHHHHHhccHHHHHhCcCceEEEEecccCCCCCCCCeeEEEEEEECCHHHHHHHHcCHHHHHHHHH
Confidence 345 77666443 3434446777799999998754322 22344999999999999999998888987776544
No 15
>PRK13314 heme-degrading monooxygenase IsdG; Provisional
Probab=84.94 E-value=6.6 Score=32.11 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=50.1
Q ss_pred EEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676 80 LKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK 152 (293)
Q Consensus 80 fK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~ 152 (293)
++++++..++-++.+ .=..+.++.||-+.+++-+.... .+.-.+...++.+|+|+.+++...++|.+.-+
T Consensus 8 i~V~~G~~~~~~erF--~r~~~ie~~pGF~~~~vLr~~~~-~~~~~y~v~T~Wes~eaF~aW~~S~aFr~AH~ 77 (107)
T PRK13314 8 AKITKGNGHKLIDRF--NKVGKVETMPGFLGLEVLLTQNT-VDYDEVTISTRWNAKEDFQGWTKSPAFKAAHS 77 (107)
T ss_pred EEeCCCchHHHHHHh--ccCCccccCCCcEEEEEecCCCC-CCCceEEEEEEECCHHHHHHHHcCHHHHHHHh
Confidence 566666655555555 23335667999999998876542 23335666799999999999999999998543
No 16
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=83.58 E-value=5 Score=29.31 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=26.4
Q ss_pred CCccEEEEEEECCHHHHHhhccCcchHHH
Q 022676 122 ENYTHGVFMRFQRKEHLVKFYENPFYSKV 150 (293)
Q Consensus 122 ~gythaL~s~F~s~edL~~Y~~HP~H~~v 150 (293)
..++..++++|.|.++..++.++|+.+++
T Consensus 36 ~~~~~~viieFPs~~aa~~~~~speYq~~ 64 (65)
T PF07045_consen 36 WDPDRVVIIEFPSMEAAKAWYNSPEYQAL 64 (65)
T ss_dssp -SSSEEEEEEESSHHHHHHHHCSHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHCCHhHHhh
Confidence 56899999999999999999999999984
No 17
>PRK13312 heme-degrading monooxygenase IsdG; Provisional
Probab=83.25 E-value=5.2 Score=32.79 Aligned_cols=68 Identities=7% Similarity=0.180 Sum_probs=49.9
Q ss_pred EEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCcc-EEEEEEECCHHHHHhhccCcchHHHH
Q 022676 80 LKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYT-HGVFMRFQRKEHLVKFYENPFYSKVL 151 (293)
Q Consensus 80 fK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gyt-haL~s~F~s~edL~~Y~~HP~H~~vv 151 (293)
|+++++..++-++.+... .. .++.||-+.+++-+...+ .++| +...++.+|+|+.+++...++|.+--
T Consensus 9 i~V~~G~~~~~e~rF~~r-~~-ie~~pGF~~~~vLr~~~~--~~~d~y~v~T~WeseeaFeaW~~SdaFr~AH 77 (107)
T PRK13312 9 LTLTKGTAKDIIERFYTR-HG-IETLEGFDGMFVTQTLEQ--EDFDEVKILTVWKSKQAFTDWLKSDVFKAAH 77 (107)
T ss_pred EEeCCCcHHHHHHHHccc-CC-cccCCCeEEEEEeecCCC--CCceEEEEEEEECCHHHHHHHhcCHHHHHHH
Confidence 556666655555555444 33 567999999998876543 3455 66679999999999999999988744
No 18
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=82.60 E-value=5.1 Score=29.26 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=25.6
Q ss_pred CCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676 238 EIYTHAVVIRLRSVEAFEMFVGSSDYKEM 266 (293)
Q Consensus 238 kGythafv~~F~s~eald~Y~~hp~H~~~ 266 (293)
...+..++++|+|.++..++..+|+++++
T Consensus 36 ~~~~~~viieFPs~~aa~~~~~speYq~~ 64 (65)
T PF07045_consen 36 WDPDRVVIIEFPSMEAAKAWYNSPEYQAL 64 (65)
T ss_dssp -SSSEEEEEEESSHHHHHHHHCSHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHCCHhHHhh
Confidence 55788999999999999999999999873
No 19
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=82.19 E-value=16 Score=29.41 Aligned_cols=86 Identities=17% Similarity=0.142 Sum_probs=56.3
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCC-CCCCc-eEEEEEEeCCHHHHHhhcCChhHHHHHHh
Q 022676 192 VLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNL-SSEIY-THAVVIRLRSVEAFEMFVGSSDYKEMWSN 269 (293)
Q Consensus 192 IVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp-~~kGy-thafv~~F~s~eald~Y~~hp~H~~~~~~ 269 (293)
|+.++.++ +++.++=.......-++.-| +=+.-|-+.-. ..... |--+|++|+|.++......+|+++.+...
T Consensus 7 Ia~vdv~D---~e~y~~Y~~~~~~a~~~~Gg--r~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~SpeYq~a~~~ 81 (96)
T COG5470 7 IADVDVRD---PEQYKDYVSKAKPAIEKFGG--RYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYNSPEYQAAAAI 81 (96)
T ss_pred EEEEeecC---HHHHHHHHHHhHHHHHHhCC--eeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhcCHHHHHHHHH
Confidence 44444443 36666666666666666655 33444444444 44466 78899999999999999999999987665
Q ss_pred hhhccccceeEEe
Q 022676 270 KFQPIIRTQLPVH 282 (293)
Q Consensus 270 ~v~p~~e~i~vvD 282 (293)
.-...-..++++|
T Consensus 82 Rq~~ad~~~iiVe 94 (96)
T COG5470 82 RQAAADSEIIIVE 94 (96)
T ss_pred HhhcccccEEEEe
Confidence 4444444556655
No 20
>PRK13315 heme-degrading monooxygenase IsdG; Provisional
Probab=77.34 E-value=19 Score=29.45 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=50.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCcc-EEEEEEECCHHHHHhhccCcchHHHHH
Q 022676 77 ICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYT-HGVFMRFQRKEHLVKFYENPFYSKVLK 152 (293)
Q Consensus 77 IVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gyt-haL~s~F~s~edL~~Y~~HP~H~~vv~ 152 (293)
+=-|+++++..++-++.+ . =.....+.||-+.+++-+... ..++| +...++.+|+|+.++....++|.+.-+
T Consensus 5 ~Nr~~V~~g~~~~fe~rf-~-r~~~le~~pGFv~~~lLr~~~--~~~~~~~~v~T~Wes~eaF~aW~~S~aF~~AH~ 77 (107)
T PRK13315 5 TNRITVKKGFAAKMAPRF-T-KGGPLEELEGFHKVEVWLIDN--DDEYDEMYVNMWWETEEDFEAWRNSDAFKEAHK 77 (107)
T ss_pred EEEEEeCCCcHHHHHHHH-c-cCCcccCCCCeEEEEEeccCC--CCCCceEEEEEEECCHHHHHHHhcCHHHHHHhh
Confidence 344666666655544443 2 122556689999999876543 34566 446799999999999999999998543
No 21
>PRK13313 heme-degrading monooxygenase IsdI; Provisional
Probab=74.77 E-value=21 Score=29.35 Aligned_cols=70 Identities=11% Similarity=0.205 Sum_probs=50.0
Q ss_pred EEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCcc-EEEEEEECCHHHHHhhccCcchHHHHH
Q 022676 79 LLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYT-HGVFMRFQRKEHLVKFYENPFYSKVLK 152 (293)
Q Consensus 79 lfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gyt-haL~s~F~s~edL~~Y~~HP~H~~vv~ 152 (293)
-++++++..++-++.+...- . .++.||-+.+++-+... ..+|| ++..++.+|+|+.+++...++|.+.-+
T Consensus 7 ri~V~~G~~~~~~~rF~~r~-~-ie~~pGF~~~~vLr~~~--~~~~~~~~V~T~Wesee~F~~Wt~SdaF~~AH~ 77 (108)
T PRK13313 7 RLQLQKGSAEETIERFYNRQ-G-IETIEGFQQMFVTKTLN--TEDTDEVKILTIWESEDSFNNWLNSDVFKEAHK 77 (108)
T ss_pred EEEeCCCcHHHHHHHHcccC-C-cccCCCeEEEEEecCCC--CCCceEEEEEEEECCHHHHHHHhcCHHHHHHHh
Confidence 35666666555555554333 3 46699999999887553 34676 455689999999999999999987443
No 22
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=73.93 E-value=34 Score=26.69 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=51.1
Q ss_pred CCCChHHHH-HHHHHHhhhhcCcceeeEEeeccCC--CCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHHhhhhcccc
Q 022676 201 AFGGPAEDA-LESLKRLTAEFPSLIVQSTQGSNFN--LSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIR 276 (293)
Q Consensus 201 ~s~e~i~~l-~~~l~~Lk~~iPg~I~~~t~G~N~S--p~~kGythafv~~F~s~eald~Y~~hp~H~~~~~~~v~p~~e 276 (293)
.+.++-.+- .+.-..|..++|| +++++.....+ +....|+-...+.|+|.++++.-...|+-+++ .+-+.-+++
T Consensus 11 ~~~e~F~~yy~~~H~pL~~~~pg-~~~y~~~~~~~~~~~~~~~d~i~el~Fds~e~~~~a~~sp~~~~~-~~D~~nF~d 87 (100)
T TIGR02118 11 EDGAAFDHHYRDTHVPLAQKLPG-LRRYAVDKIVSGLPGSSPYYGMCELYFDSIEDFQAAFDSPEGKAA-AADVANFAD 87 (100)
T ss_pred CCHHHHHHHHHhccHHHHHhCcC-ceEEEEecccCCCCCCCCeeEEEEEEECCHHHHHHHHcCHHHHHH-HHHHHhhcC
Confidence 665555543 4456677778999 99988754433 22344999999999999999999989976553 334444443
No 23
>PRK13316 heme-degrading monooxygenase IsdG; Provisional
Probab=72.68 E-value=28 Score=29.22 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=48.1
Q ss_pred EEecCCCCHHHHHHHHHHHH-----hhhhcCCceEEEEEeecCCCCCCCcc-EEEEEEECCHHHHHhhccCcchHHHHH
Q 022676 80 LKAKKDLSEEEEKDMLDYLY-----TSQYQMGGIVAISLGRISNENVENYT-HGVFMRFQRKEHLVKFYENPFYSKVLK 152 (293)
Q Consensus 80 fK~K~~~s~e~~~~~~~~L~-----~L~~~IPgv~~i~~G~~~s~~~~gyt-haL~s~F~s~edL~~Y~~HP~H~~vv~ 152 (293)
|+++++..++-++.+...-. ...+++||-+.+++=..... .++|+ +...++-+|+|+.++....++|.+.-+
T Consensus 8 i~V~~g~a~~~~~rF~~r~~~g~~~~~ie~~pGFv~f~lL~~~~~-~~~~~e~~V~T~WeSeeaF~aW~~SdaFr~AH~ 85 (121)
T PRK13316 8 IKVEKGAAEHVIRQFTGANGDGHPTKDIAEVEGFLGFELWHSKPE-DKDYEEVVVTSKWESEEAQRNWVKSDSFKKAHG 85 (121)
T ss_pred EEeCCCcHHHHHHHHhccCcccccccchhcCCCceEEEEeeccCC-CCCceEEEEEEEECCHHHHHHHhcCHHHHHHHh
Confidence 55556554444444433210 15667999999998654322 34565 566799999999999999999988443
No 24
>COG3224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.37 E-value=28 Score=31.34 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=59.0
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676 73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK 152 (293)
Q Consensus 73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~ 152 (293)
.+.=++.=++|++- ++.-.+..+.++++..+.||=+.-.+ ...+.++.++..++.||++-|.|.+....|+-++.+.
T Consensus 10 ~vs~~ia~rvkPg~-ea~~law~~ei~~l~~~~PG~igS~i--i~p~~G~~~e~~~ifRFD~~enl~aW~~SpeR~~wl~ 86 (195)
T COG3224 10 PVSLLIARRVKPGH-EAIFLAWQEEIKALARKYPGYIGSGI--IRPQAGDRFEYETIFRFDNLENLAAWIHSPERRAWLE 86 (195)
T ss_pred ceEEEEEeecCCCc-HHHHHHHHHHHHHHHHhCCCccccCc--cccCCCCceeEEEEEEecCHHHHHHhhcCHHHHHHHH
Confidence 45555666777764 45577888889999889999644333 2222456789999999999999999999999998775
Q ss_pred H
Q 022676 153 E 153 (293)
Q Consensus 153 ~ 153 (293)
+
T Consensus 87 ~ 87 (195)
T COG3224 87 R 87 (195)
T ss_pred H
Confidence 4
No 25
>PF13826 DUF4188: Domain of unknown function (DUF4188)
Probab=64.55 E-value=9.6 Score=31.70 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=29.4
Q ss_pred ceEEEEEEeCCHHHHHhhcCChhHHHHHHhhhhc
Q 022676 240 YTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQP 273 (293)
Q Consensus 240 ythafv~~F~s~eald~Y~~hp~H~~~~~~~v~p 273 (293)
=+.+.|.-|+|.|+|.+|..++.|.++++..-+-
T Consensus 51 ~~~~~v~YwRs~e~L~~fA~~~~H~~aW~~fn~~ 84 (117)
T PF13826_consen 51 RTIMLVQYWRSFEDLHRFAHDPPHRPAWRWFNKR 84 (117)
T ss_pred CceEEEEEECCHHHHHHHHCCChHHHHHHHHHHH
Confidence 4678999999999999999999999998765543
No 26
>PRK13314 heme-degrading monooxygenase IsdG; Provisional
Probab=63.11 E-value=78 Score=25.83 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=53.5
Q ss_pred EEecCCCCCChHHHHHHHH--HHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHH---h
Q 022676 195 ISFIQSAFGGPAEDALESL--KRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWS---N 269 (293)
Q Consensus 195 ~kFk~~~s~e~i~~l~~~l--~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~---~ 269 (293)
|+.+++.. +++.+.+ .++.++.|| -++++.-..... .+.-.+...++.+|+++.+++..++++.++-+ +
T Consensus 8 i~V~~G~~----~~~~erF~r~~~ie~~pG-F~~~~vLr~~~~-~~~~~y~v~T~Wes~eaF~aW~~S~aFr~AH~~~~~ 81 (107)
T PRK13314 8 AKITKGNG----HKLIDRFNKVGKVETMPG-FLGLEVLLTQNT-VDYDEVTISTRWNAKEDFQGWTKSPAFKAAHSHQGG 81 (107)
T ss_pred EEeCCCch----HHHHHHhccCCccccCCC-cEEEEEecCCCC-CCCceEEEEEEECCHHHHHHHHcCHHHHHHHhccCC
Confidence 55555443 3444444 224456799 888887765442 23345677899999999999999999988765 2
Q ss_pred hhhccccceeEEeeEe
Q 022676 270 KFQPIIRTQLPVHFSV 285 (293)
Q Consensus 270 ~v~p~~e~i~vvDy~v 285 (293)
.-.|++. .-+.-|+|
T Consensus 82 ~~~~i~~-~~i~~yeV 96 (107)
T PRK13314 82 MPDYILD-NKISYYDV 96 (107)
T ss_pred CCCcccc-CeeEEEEE
Confidence 2334444 33444554
No 27
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=62.65 E-value=62 Score=24.12 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=27.4
Q ss_pred CCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676 120 NVENYTHGVFMRFQRKEHLVKFYENPFYSKVL 151 (293)
Q Consensus 120 ~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv 151 (293)
....||-+-.+-|+|.+++.+...+|+.++.+
T Consensus 53 ~~~~~Dgi~e~~f~~~e~~~~~~~~p~~~~~l 84 (95)
T PF07110_consen 53 DPPDYDGIAELWFDSLEALQAAFADPEYQAAL 84 (95)
T ss_dssp C--SEEEEEEEEECCHHHHHHHHCSHHCHHHH
T ss_pred CCCCEeEEEEEEECCHHHHHHHHCCHHHHHHH
Confidence 34679999999999999999999999999843
No 28
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=62.15 E-value=28 Score=24.87 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=37.1
Q ss_pred EEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcC
Q 022676 193 LLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVG 259 (293)
Q Consensus 193 Vl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~ 259 (293)
|+++.+++. +..+++.+.|.+ +|+ |.++..- ++.|+.-+.+.++|.++++.+..
T Consensus 1 V~V~~~~~~--~~~~~~~~~l~~----~p~-V~~~~~v------tG~~d~~~~v~~~d~~~l~~~i~ 54 (74)
T PF01037_consen 1 VLVKVEPGH--DAYDEFAEALAE----IPE-VVECYSV------TGEYDLILKVRARDMEELEEFIR 54 (74)
T ss_dssp EEEEESTTG--THHHHHHHHHHT----STT-EEEEEEE------SSSSSEEEEEEESSHHHHHHHHH
T ss_pred CEEEEcCCC--chHHHHHHHHHc----CCC-EEEEEEE------eCCCCEEEEEEECCHHHHHHHHH
Confidence 455555544 456666665554 677 6655432 36799999999999999998854
No 29
>PF11695 DUF3291: Domain of unknown function (DUF3291); InterPro: IPR021708 This bacterial family of proteins has no known function.
Probab=58.46 E-value=1.2e+02 Score=26.01 Aligned_cols=120 Identities=17% Similarity=0.094 Sum_probs=79.9
Q ss_pred EecCCCCHHHHHHHH---HHHHhhhhcCCceEEEEEeecCC-----CCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676 81 KAKKDLSEEEEKDML---DYLYTSQYQMGGIVAISLGRISN-----ENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK 152 (293)
Q Consensus 81 K~K~~~s~e~~~~~~---~~L~~L~~~IPgv~~i~~G~~~s-----~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~ 152 (293)
++|..+.....++++ +...++.+.-||.+--..+.... +...+-...-.|--+|.|+|.+|.-.-.|.++++
T Consensus 8 ~~~ap~ddP~~~~F~~~l~~vn~~a~~spGFvwr~~~~~~~~t~~~~~~d~~~~~nlSvWes~eaL~~Fvy~~~H~~~l~ 87 (140)
T PF11695_consen 8 RLKAPLDDPRMADFVDNLDRVNALAERSPGFVWRLQDEGGDATSLRPFDDPRVIVNLSVWESVEALRAFVYRGPHREALR 87 (140)
T ss_pred eeeCCCCCchHHHHHHccHHHHHHHHhCCCcEEEeccCCCCcceeccCCCCceEEEEeeeCCHHHHHHHHhcChHHHHHH
Confidence 345555555666664 45577888899986554432211 1122234666789999999999996666999997
Q ss_pred HhhccceeeeeeeeeecccCCCccccccCCCCcccceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEE
Q 022676 153 EHVMPYCHGLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQST 228 (293)
Q Consensus 153 ~~i~p~~e~~~vvDye~~v~~~~~~~~~~g~~~~~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t 228 (293)
.. +.-. .+. ++. |.||+-...+..+ ..++.++.|+-|+..=|+ =..|+
T Consensus 88 rr-reWF----------------~~~---~~~------~~vlWWVp~G~~P-t~~EA~~RL~~L~~hGps-~~AFt 135 (140)
T PF11695_consen 88 RR-REWF----------------EKM---GEP------HFVLWWVPAGHRP-TWQEAVERLEHLRDHGPS-PFAFT 135 (140)
T ss_pred HH-HHHh----------------hcc---CCc------eEEEEECCCCCCC-CHHHHHHHHHHHHHhCCC-ccccc
Confidence 64 2111 111 222 7899999888887 799999999999987666 33443
No 30
>PRK13316 heme-degrading monooxygenase IsdG; Provisional
Probab=55.61 E-value=1.2e+02 Score=25.36 Aligned_cols=68 Identities=21% Similarity=0.168 Sum_probs=48.3
Q ss_pred EEecCCCCCChHHHHHHHHHH---------hhhhcCcceeeEEeeccCCCCCCCce-EEEEEEeCCHHHHHhhcCChhHH
Q 022676 195 ISFIQSAFGGPAEDALESLKR---------LTAEFPSLIVQSTQGSNFNLSSEIYT-HAVVIRLRSVEAFEMFVGSSDYK 264 (293)
Q Consensus 195 ~kFk~~~s~e~i~~l~~~l~~---------Lk~~iPg~I~~~t~G~N~Sp~~kGyt-hafv~~F~s~eald~Y~~hp~H~ 264 (293)
|+.+++. .+++.+.+.+ ..++.|| -++++.=.+. +..++|+ ....++-+|+|+.++...++++.
T Consensus 8 i~V~~g~----a~~~~~rF~~r~~~g~~~~~ie~~pG-Fv~f~lL~~~-~~~~~~~e~~V~T~WeSeeaF~aW~~SdaFr 81 (121)
T PRK13316 8 IKVEKGA----AEHVIRQFTGANGDGHPTKDIAEVEG-FLGFELWHSK-PEDKDYEEVVVTSKWESEEAQRNWVKSDSFK 81 (121)
T ss_pred EEeCCCc----HHHHHHHHhccCcccccccchhcCCC-ceEEEEeecc-CCCCCceEEEEEEEECCHHHHHHHhcCHHHH
Confidence 4555543 4666666664 6677899 8888874322 1234564 56788999999999999999998
Q ss_pred HHHH
Q 022676 265 EMWS 268 (293)
Q Consensus 265 ~~~~ 268 (293)
++-+
T Consensus 82 ~AH~ 85 (121)
T PRK13316 82 KAHG 85 (121)
T ss_pred HHHh
Confidence 8765
No 31
>PRK13315 heme-degrading monooxygenase IsdG; Provisional
Probab=55.24 E-value=1.1e+02 Score=24.93 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=45.1
Q ss_pred EEecCCCCCChHHHHHHHHHH--hhhhcCcceeeEEeeccCCCCCCCce-EEEEEEeCCHHHHHhhcCChhHHHHHH
Q 022676 195 ISFIQSAFGGPAEDALESLKR--LTAEFPSLIVQSTQGSNFNLSSEIYT-HAVVIRLRSVEAFEMFVGSSDYKEMWS 268 (293)
Q Consensus 195 ~kFk~~~s~e~i~~l~~~l~~--Lk~~iPg~I~~~t~G~N~Sp~~kGyt-hafv~~F~s~eald~Y~~hp~H~~~~~ 268 (293)
|+.+++.. +++.+.+.. .-++.|| -+.++.-.... ..+|+ ....+..+|+++.++...+++++++-+
T Consensus 8 ~~V~~g~~----~~fe~rf~r~~~le~~pG-Fv~~~lLr~~~--~~~~~~~~v~T~Wes~eaF~aW~~S~aF~~AH~ 77 (107)
T PRK13315 8 ITVKKGFA----AKMAPRFTKGGPLEELEG-FHKVEVWLIDN--DDEYDEMYVNMWWETEEDFEAWRNSDAFKEAHK 77 (107)
T ss_pred EEeCCCcH----HHHHHHHccCCcccCCCC-eEEEEEeccCC--CCCCceEEEEEEECCHHHHHHHhcCHHHHHHhh
Confidence 55555443 334444432 3456799 88887765432 34555 446899999999999999999988765
No 32
>PRK13312 heme-degrading monooxygenase IsdG; Provisional
Probab=54.18 E-value=48 Score=27.16 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=46.8
Q ss_pred EEecCCCCCChHHHHHHHH---HHhhhhcCcceeeEEeeccCCCCCCCc-eEEEEEEeCCHHHHHhhcCChhHHHHHH
Q 022676 195 ISFIQSAFGGPAEDALESL---KRLTAEFPSLIVQSTQGSNFNLSSEIY-THAVVIRLRSVEAFEMFVGSSDYKEMWS 268 (293)
Q Consensus 195 ~kFk~~~s~e~i~~l~~~l---~~Lk~~iPg~I~~~t~G~N~Sp~~kGy-thafv~~F~s~eald~Y~~hp~H~~~~~ 268 (293)
|+.+++.. +++.+.+ .+ -++.|| -+.++.-.+..+ .+| .+..+++.+|+++.+++..++++.++-+
T Consensus 9 i~V~~G~~----~~~e~rF~~r~~-ie~~pG-F~~~~vLr~~~~--~~~d~y~v~T~WeseeaFeaW~~SdaFr~AH~ 78 (107)
T PRK13312 9 LTLTKGTA----KDIIERFYTRHG-IETLEG-FDGMFVTQTLEQ--EDFDEVKILTVWKSKQAFTDWLKSDVFKAAHK 78 (107)
T ss_pred EEeCCCcH----HHHHHHHcccCC-cccCCC-eEEEEEeecCCC--CCceEEEEEEEECCHHHHHHHhcCHHHHHHHh
Confidence 55555443 3444444 23 456899 889888776544 344 4778899999999999999999988765
No 33
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=53.72 E-value=37 Score=25.46 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=34.6
Q ss_pred EEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeec
Q 022676 75 EHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRI 116 (293)
Q Consensus 75 ~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~ 116 (293)
.+.|...+|++..+.+-+++.++|..| + ++++.++..|.-
T Consensus 2 ~~~v~V~~k~gv~Dp~G~ti~~~l~~l-g-~~~v~~Vr~~k~ 41 (73)
T PRK06423 2 KFKVEVTYKPGVEDPEALTILKNLNIL-G-YNGIKGVSISKV 41 (73)
T ss_pred eEEEEEEECCCCcChHHHHHHHHHHHc-C-CCCcceEEEEEE
Confidence 578889999999999999999999997 4 888888888863
No 34
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=48.75 E-value=94 Score=26.20 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=40.3
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhc
Q 022676 73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFY 142 (293)
Q Consensus 73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~ 142 (293)
.+.=+|.+++++. +..+++.+.|.+ +|+|.....- +++||+.+.+.+.|.+++..+.
T Consensus 68 ~~~a~v~v~v~~~---~~~~~~~~~l~~----~p~V~~~~~~------tG~~dl~~~v~~~d~~~l~~~~ 124 (153)
T PRK11179 68 DVCCFIGIILKSA---KDYPSALAKLES----LDEVVEAYYT------TGHYSIFIKVMCRSIDALQHVL 124 (153)
T ss_pred CEEEEEEEEEccc---ccHHHHHHHHhC----CCCEEEEEEc------ccCCCEEEEEEECCHHHHHHHH
Confidence 3555677888642 234555555554 8999877543 3579999999999999998874
No 35
>PF13826 DUF4188: Domain of unknown function (DUF4188)
Probab=46.92 E-value=80 Score=26.23 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=28.7
Q ss_pred CccEEEEEEECCHHHHHhhccCcchHHHHHHhh
Q 022676 123 NYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHV 155 (293)
Q Consensus 123 gythaL~s~F~s~edL~~Y~~HP~H~~vv~~~i 155 (293)
+=+.+++.=|.|.|+|.+|+..|.|.+.-+.+-
T Consensus 50 ~~~~~~v~YwRs~e~L~~fA~~~~H~~aW~~fn 82 (117)
T PF13826_consen 50 PRTIMLVQYWRSFEDLHRFAHDPPHRPAWRWFN 82 (117)
T ss_pred CCceEEEEEECCHHHHHHHHCCChHHHHHHHHH
Confidence 467888999999999999999999998776654
No 36
>PRK13313 heme-degrading monooxygenase IsdI; Provisional
Probab=43.87 E-value=1.2e+02 Score=24.78 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=46.2
Q ss_pred EEecCCCCCChHHHHHHHHH---HhhhhcCcceeeEEeeccCCCCCCCce-EEEEEEeCCHHHHHhhcCChhHHHHHH
Q 022676 195 ISFIQSAFGGPAEDALESLK---RLTAEFPSLIVQSTQGSNFNLSSEIYT-HAVVIRLRSVEAFEMFVGSSDYKEMWS 268 (293)
Q Consensus 195 ~kFk~~~s~e~i~~l~~~l~---~Lk~~iPg~I~~~t~G~N~Sp~~kGyt-hafv~~F~s~eald~Y~~hp~H~~~~~ 268 (293)
|+.+++.. +++.+.+. +| ++.|| -+.++.-.... ..+|+ +...++.+|.|+.+++..++++.++-+
T Consensus 8 i~V~~G~~----~~~~~rF~~r~~i-e~~pG-F~~~~vLr~~~--~~~~~~~~V~T~Wesee~F~~Wt~SdaF~~AH~ 77 (108)
T PRK13313 8 LQLQKGSA----EETIERFYNRQGI-ETIEG-FQQMFVTKTLN--TEDTDEVKILTIWESEDSFNNWLNSDVFKEAHK 77 (108)
T ss_pred EEeCCCcH----HHHHHHHcccCCc-ccCCC-eEEEEEecCCC--CCCceEEEEEEEECCHHHHHHHhcCHHHHHHHh
Confidence 55555443 34444442 33 56799 88888776433 35675 567888999999999999999988765
No 37
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=42.68 E-value=1.5e+02 Score=25.29 Aligned_cols=59 Identities=7% Similarity=0.013 Sum_probs=42.0
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhc
Q 022676 73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFY 142 (293)
Q Consensus 73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~ 142 (293)
.+.=+|..++++. .++..+++.+.+.+ +|+|..... .++.||+.+.+.+.|.++|+.+.
T Consensus 73 ~~~a~v~i~~~~~-~~~~~~~~~~~l~~----~p~V~~~~~------vtG~~d~~l~v~~~~~~~l~~~l 131 (164)
T PRK11169 73 SLLVFVEITLNRG-APDVFEQFNAAVQK----LEEIQECHL------VSGDFDYLLKTRVPDMSAYRKLL 131 (164)
T ss_pred CEEEEEEEEEcCC-ChHHHHHHHHHHhc----Ccceeeeee------ecCCCCEEEEEEECCHHHHHHHH
Confidence 4566777888643 34455666666655 788877642 14579999999999999998765
No 38
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=40.08 E-value=1.7e+02 Score=23.11 Aligned_cols=56 Identities=11% Similarity=0.072 Sum_probs=38.8
Q ss_pred EEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEE-eeccCCC-CCCCceEEEEEEe
Q 022676 193 LLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQST-QGSNFNL-SSEIYTHAVVIRL 248 (293)
Q Consensus 193 Vl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t-~G~N~Sp-~~kGythafv~~F 248 (293)
.++=++++.++++++++++.+.++-.+-.|.|..++ ||.-.-. .-++++-|.-+.|
T Consensus 10 ~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~ 67 (97)
T CHL00123 10 TMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQM 67 (97)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEE
Confidence 345567888999999999999988877766555554 8854433 4566666754444
No 39
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=38.82 E-value=86 Score=23.86 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=33.2
Q ss_pred EEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeec
Q 022676 75 EHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRI 116 (293)
Q Consensus 75 ~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~ 116 (293)
++-|...+|++..+.+-+++.++|..| .++++.+++.|+-
T Consensus 2 ~~~I~V~~k~gV~Dp~G~ti~~~l~~l--g~~~v~~Vr~~k~ 41 (80)
T TIGR00302 2 KVEVYIRLKKGVLDPEGAAIQRALALL--GYNEVKDVRTGKV 41 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHc--CCCCcceEEEEEE
Confidence 466778899999999999999999996 4788888888763
No 40
>COG3224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.98 E-value=2.5e+02 Score=25.40 Aligned_cols=81 Identities=12% Similarity=0.269 Sum_probs=57.5
Q ss_pred EEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccC-CC-CCCCceEEEEEEeCCHHHHHhhcCChhHHHHHHhh
Q 022676 193 LLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNF-NL-SSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNK 270 (293)
Q Consensus 193 Vl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~-Sp-~~kGythafv~~F~s~eald~Y~~hp~H~~~~~~~ 270 (293)
+.=+.|++. .++-.+-.+.+.+|..+.|| - .|.|. -| ....+++-.+.+|++.|-+.+...+|+-.. +-+.
T Consensus 15 ia~rvkPg~-ea~~law~~ei~~l~~~~PG-~----igS~ii~p~~G~~~e~~~ifRFD~~enl~aW~~SpeR~~-wl~~ 87 (195)
T COG3224 15 IARRVKPGH-EAIFLAWQEEIKALARKYPG-Y----IGSGIIRPQAGDRFEYETIFRFDNLENLAAWIHSPERRA-WLER 87 (195)
T ss_pred EEeecCCCc-HHHHHHHHHHHHHHHHhCCC-c----cccCccccCCCCceeEEEEEEecCHHHHHHhhcCHHHHH-HHHH
Confidence 334445543 34455678888999999999 2 34443 23 456689999999999999999999998765 5567
Q ss_pred hhccccceeE
Q 022676 271 FQPIIRTQLP 280 (293)
Q Consensus 271 v~p~~e~i~v 280 (293)
...+.|.-..
T Consensus 88 ~e~~~ee~~~ 97 (195)
T COG3224 88 GENLVEEFVG 97 (195)
T ss_pred hhccccccch
Confidence 7777665544
No 41
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=36.19 E-value=1.2e+02 Score=23.43 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=29.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeec
Q 022676 77 ICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRI 116 (293)
Q Consensus 77 IVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~ 116 (293)
-|...+|+++.+.+-+++.++|..| + ..+|.+++.|.-
T Consensus 4 ~V~V~~K~gvlDPqG~ai~~al~~l-G-~~~v~~Vr~GK~ 41 (80)
T PF02700_consen 4 RVEVTLKPGVLDPQGEAIKRALHRL-G-YDGVKDVRVGKY 41 (80)
T ss_dssp EEEEEE-TTS--HHHHHHHHHHHHT-T--TTEEEEEEEEE
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHc-C-CcccCcEEEEEE
Confidence 4677899999999999999999886 3 799999999964
No 42
>PF14114 DUF4286: Domain of unknown function (DUF4286)
Probab=33.97 E-value=1.7e+02 Score=23.13 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHh----hhhcCCceEEEEEeecCCCC-CCCccEEEEEEECCHHHHHhhc--cCcchHH
Q 022676 87 SEEEEKDMLDYLYT----SQYQMGGIVAISLGRISNEN-VENYTHGVFMRFQRKEHLVKFY--ENPFYSK 149 (293)
Q Consensus 87 s~e~~~~~~~~L~~----L~~~IPgv~~i~~G~~~s~~-~~gythaL~s~F~s~edL~~Y~--~HP~H~~ 149 (293)
+++..++.++-+++ -.-..++..+..+-+...+. .+|-++++.-.++|.++|+.|. .-|..++
T Consensus 9 ~~~v~~~wl~W~k~~hIp~vl~~~~f~~~~~~kvl~~~~~~g~tysvQy~~~s~e~l~~y~~~~~~~l~~ 78 (98)
T PF14114_consen 9 DEEVHEEWLNWMKEEHIPEVLATGKFSKARICKVLSEEEEGGKTYSVQYEVESMEDLERYYEEHAPKLRE 78 (98)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEeecCCCCCeEEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 44445555554422 11124666677777666553 4599999999999999999998 3344444
No 43
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=33.05 E-value=2.6e+02 Score=22.57 Aligned_cols=60 Identities=15% Similarity=0.051 Sum_probs=43.4
Q ss_pred ecCCCC-HHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCc
Q 022676 82 AKKDLS-EEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENP 145 (293)
Q Consensus 82 ~K~~~s-~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP 145 (293)
|+-+.+ .++..+.+..|..-..+-||++-=.|..|... -+-+=+--|+|++++++|..-+
T Consensus 6 F~~~gPfg~em~~~~~~LA~sI~~ePGliwKiWten~~t----~eaGGiYLFe~e~~A~aY~~~h 66 (97)
T PF08803_consen 6 FPYNGPFGEEMSKAFNDLAESINQEPGLIWKIWTENEET----GEAGGIYLFEDEASAEAYLEMH 66 (97)
T ss_dssp EESSSS-HHHHHHHHHHHHHHHTTSTTEEEEEEEEETTT----TEEEEEEEESSHHHHHHHHHHH
T ss_pred ecCCCCcHHHHHHHHHHHHHHHhhCCCeEEEEEEecCCC----CccceEEEECCHHHHHHHHHHH
Confidence 333444 56666666677776777899998888887653 4555667899999999998644
No 44
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=31.57 E-value=32 Score=26.33 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=15.0
Q ss_pred cCCCCcchhhhhhhhhhhhccCCceeEEEEeecc
Q 022676 27 SSSVSLNVSRWNEAMSMRLSRERTVGTTVLASKE 60 (293)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (293)
+++|++.+-.|+-|-|-- +.+++++||+..+
T Consensus 7 c~~C~~d~NtW~P~YStE---L~kPAMI~cs~~~ 37 (78)
T PF13341_consen 7 CAGCDVDVNTWVPYYSTE---LNKPAMIFCSRGG 37 (78)
T ss_dssp STT----TTT----STT----SSS--EEEE-STT
T ss_pred cCCCccCCcccccccccc---cCCceEEEEeCCC
Confidence 568899999999999994 4558999998763
No 45
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=30.95 E-value=1.4e+02 Score=22.28 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=32.5
Q ss_pred eEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeecc
Q 022676 190 EFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSN 232 (293)
Q Consensus 190 ~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N 232 (293)
.+.|.+.+|+++..-+=+.+.+.|..| + +++ +.++..|.=
T Consensus 2 ~~~v~V~~k~gv~Dp~G~ti~~~l~~l-g-~~~-v~~Vr~~k~ 41 (73)
T PRK06423 2 KFKVEVTYKPGVEDPEALTILKNLNIL-G-YNG-IKGVSISKV 41 (73)
T ss_pred eEEEEEEECCCCcChHHHHHHHHHHHc-C-CCC-cceEEEEEE
Confidence 578899999999999889999999887 4 777 677776643
No 46
>PRK09565 hypothetical protein; Reviewed
Probab=30.69 E-value=1.4e+02 Score=30.96 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=62.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHHHhhcc
Q 022676 78 CLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMP 157 (293)
Q Consensus 78 VlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~~i~p 157 (293)
..+++|++-.++-.+++-+-+.-|+ ...|.++..+=+|... .-++.+.++.+|+|+..+|...-+..+.+ ++-+.
T Consensus 447 m~Y~Vk~~h~~eF~~~F~~V~~~L~-~~~G~~~~~L~~~v~d---~~~~~I~seW~~~e~~~~F~~S~~f~etv-~~Gk~ 521 (533)
T PRK09565 447 MFYTVKPDYREDFVETFDTVGGLLA-EMDGHRETDLLVNRDD---ENDMFIASQWDSKEDAMAFFRSDAFRETV-EWGRD 521 (533)
T ss_pred eEEEecCchHHHHHHHHHHHHHHHh-hcCCcccceeeeecCC---chhcEEeeeccCHHHHHHHHhhhHHHHHH-HhhhH
Confidence 4688999988887777777777777 5899999888887743 56889999999999999998777777655 46665
Q ss_pred ceeee
Q 022676 158 YCHGL 162 (293)
Q Consensus 158 ~~e~~ 162 (293)
+++++
T Consensus 522 il~~r 526 (533)
T PRK09565 522 VLADR 526 (533)
T ss_pred hhcCC
Confidence 55543
No 47
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=29.73 E-value=90 Score=32.76 Aligned_cols=84 Identities=12% Similarity=0.137 Sum_probs=48.5
Q ss_pred eEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHH-Hhhc-CChhHHHHH
Q 022676 190 EFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAF-EMFV-GSSDYKEMW 267 (293)
Q Consensus 190 ~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eal-d~Y~-~hp~H~~~~ 267 (293)
|-||+++=-.++++.++ ++.|-. -+.||- .++.++|.|. +|.+||++.+|- .+|- .-.+.++..
T Consensus 175 RcIvilREIpettp~e~---Vk~lf~-~encPk-~iscefa~N~---------nWyITfesd~DAQqAykylreevk~fq 240 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEV---VKALFK-GENCPK-VISCEFAHND---------NWYITFESDTDAQQAYKYLREEVKTFQ 240 (684)
T ss_pred eeEEEEeecCCCChHHH---HHHHhc-cCCCCC-ceeeeeeecC---------ceEEEeecchhHHHHHHHHHHHHHhhc
Confidence 46888888777776432 222211 246999 9999999995 488999986654 3433 111222221
Q ss_pred HhhhhccccceeEEeeEeCCCCC
Q 022676 268 SNKFQPIIRTQLPVHFSVDPVGT 290 (293)
Q Consensus 268 ~~~v~p~~e~i~vvDy~v~~~g~ 290 (293)
. +|+.+.|-.+.=-+|+.|-
T Consensus 241 g---KpImARIKaintf~pkngy 260 (684)
T KOG2591|consen 241 G---KPIMARIKAINTFFPKNGY 260 (684)
T ss_pred C---cchhhhhhhhhcccCCCCC
Confidence 1 4555555544434555553
No 48
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=29.40 E-value=1.9e+02 Score=21.44 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=29.3
Q ss_pred CCCCceEEEEEEeCCHHHHHhhcCChhHHHHHHhhhh
Q 022676 236 SSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQ 272 (293)
Q Consensus 236 ~~kGythafv~~F~s~eald~Y~~hp~H~~~~~~~v~ 272 (293)
..-.|+-...+.|+|.+++.+...+|+.++.+.+-..
T Consensus 53 ~~~~~Dgi~e~~f~~~e~~~~~~~~p~~~~~l~~De~ 89 (95)
T PF07110_consen 53 DPPDYDGIAELWFDSLEALQAAFADPEYQAALRADEA 89 (95)
T ss_dssp C--SEEEEEEEEECCHHHHHHHHCSHHCHHHHHHHHH
T ss_pred CCCCEeEEEEEEECCHHHHHHHHCCHHHHHHHhccHH
Confidence 5678999999999999999999999998875443333
No 49
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=29.05 E-value=46 Score=26.97 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=38.5
Q ss_pred CCCCCcccCCCCcchhhhhhhhhhhhccCCceeEE--EEeecccccccccccCCCcEEEEEEEEecCCCCHHHHHHHHHH
Q 022676 20 RPNPGFLSSSVSLNVSRWNEAMSMRLSRERTVGTT--VLASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDY 97 (293)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~mI~HIVlfK~K~~~s~e~~~~~~~~ 97 (293)
.|..||.-++|-.-.++|-+- +..|+= +.....-+.-+++ ||-+++.| ...-++.++.|.++
T Consensus 8 dp~~~F~P~~G~i~~~~~p~g--------~gvR~Dt~~~~G~~v~~~yDs-----mlAKliv~---g~~R~~A~~rl~~a 71 (107)
T smart00878 8 DPANGFLPSPGRITRYRFPGG--------PGVRVDSGVYEGYEVPPYYDS-----MIAKLIVH---GETREEAIARLRRA 71 (107)
T ss_pred CCCCCcccCCCEEeEEEcCCC--------CCEEEEccCcCCCCcCcchhh-----hceEEEEE---cCCHHHHHHHHHHH
Confidence 466677777776666666432 223332 1112222223444 89999988 44455668888888
Q ss_pred HHhh
Q 022676 98 LYTS 101 (293)
Q Consensus 98 L~~L 101 (293)
|.++
T Consensus 72 L~e~ 75 (107)
T smart00878 72 LDEF 75 (107)
T ss_pred HHhC
Confidence 8876
No 50
>TIGR03792 uncharacterized cyanobacterial protein, TIGR03792 family. Members of this family are found, no more than one to a genome, exclusively in (but not universal to) the Cyanobacteria. These proteins are small, 100-150 amino acids. The function is unknown.
Probab=28.22 E-value=3e+02 Score=21.78 Aligned_cols=66 Identities=8% Similarity=-0.019 Sum_probs=47.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCc
Q 022676 77 ICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENP 145 (293)
Q Consensus 77 IVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP 145 (293)
+..|+.+++..++=++..-+.......+.||-+..++..+... .=.+.|+++-+|.|+-++--...
T Consensus 4 ~l~~~V~p~~~~~f~~a~~~~w~~~l~~~~GFlg~ev~~~~e~---pee~~llI~WeS~E~WK~i~~~~ 69 (90)
T TIGR03792 4 WLRFKVPPEDREAFLEADEEIWTPWLAKQPGFLGKEVWWDPEK---PEEGVLLIRWESREQWKAIPQEE 69 (90)
T ss_pred EEEEeeChhhHHHHHHHHHHHHHHHHHhCCCccceEEEecCCC---CCEEEEEEEEcCHHHHhcCCHHH
Confidence 3467887766665566666665777778999999998887643 34677889999999887765433
No 51
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=27.47 E-value=19 Score=30.39 Aligned_cols=16 Identities=56% Similarity=1.034 Sum_probs=11.7
Q ss_pred cCCCCccccccCCCCCcccC
Q 022676 9 NPFPNSFLKCHRPNPGFLSS 28 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (293)
-|.|-| |.||+|||-+
T Consensus 79 GPVPw~----HePNrGfLRa 94 (129)
T PF11349_consen 79 GPVPWS----HEPNRGFLRA 94 (129)
T ss_pred CCCCCc----cCCccHHHHH
Confidence 355654 9999999853
No 52
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=25.78 E-value=3.6e+02 Score=21.80 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhh---cCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCCh
Q 022676 207 EDALESLKRLTAE---FPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSS 261 (293)
Q Consensus 207 ~~l~~~l~~Lk~~---iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp 261 (293)
+++.+.+..|... -|| ++.=.|..|-. +=+-|=+=-|+|+++.++|....
T Consensus 14 ~em~~~~~~LA~sI~~ePG-liwKiWten~~----t~eaGGiYLFe~e~~A~aY~~~h 66 (97)
T PF08803_consen 14 EEMSKAFNDLAESINQEPG-LIWKIWTENEE----TGEAGGIYLFEDEASAEAYLEMH 66 (97)
T ss_dssp HHHHHHHHHHHHHHTTSTT-EEEEEEEEETT----TTEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCC-eEEEEEEecCC----CCccceEEEECCHHHHHHHHHHH
Confidence 4555555555554 499 77777888864 34566677899999999999754
No 53
>PF07978 NIPSNAP: NIPSNAP ; InterPro: IPR012577 Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family, which have putative roles in vesicular transport []. This domain is often found in duplicate.; PDB: 1VQY_D 2AP6_H.
Probab=24.10 E-value=2.5e+02 Score=21.19 Aligned_cols=73 Identities=10% Similarity=-0.048 Sum_probs=41.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEee-cCCCCCCCccEEEEEEECCHHHHHhhc----cCcchHHHH
Q 022676 77 ICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGR-ISNENVENYTHGVFMRFQRKEHLVKFY----ENPFYSKVL 151 (293)
Q Consensus 77 IVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~-~~s~~~~gythaL~s~F~s~edL~~Y~----~HP~H~~vv 151 (293)
+-.+++|++.-++-.+.+-+.+..+..+. |+.-+-... ... ..-++..+-.|+|.++++.+. .+|+.++.+
T Consensus 3 lr~Y~l~pg~~~~~~~~~~~~~~~~~~~~-g~~lvG~~~~~~G---~~~~~~~l~~y~~~~~r~~~~~a~~~d~~w~~~~ 78 (102)
T PF07978_consen 3 LRTYTLKPGKMDEFLELFEEALIPRQKKH-GGKLVGYWVTEVG---PLNQVVHLWSYDDLAAREEAREALYADPEWKAYV 78 (102)
T ss_dssp EEEEEESTT-HHHHHHHHHHCCHHHHHHH-H-EEEEEEEEEES---BSSEEEEEEEES-HHHHHHHHHHHHH-HHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHh-CCceeEEEEeccC---CCceEEEEEEcCCHHHHHHHHHHHHcCchHHHHH
Confidence 45688888877666566655555544322 222222222 121 135677778999999987765 899997766
Q ss_pred HH
Q 022676 152 KE 153 (293)
Q Consensus 152 ~~ 153 (293)
..
T Consensus 79 ~~ 80 (102)
T PF07978_consen 79 AE 80 (102)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 54
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=23.67 E-value=3.5e+02 Score=21.49 Aligned_cols=55 Identities=29% Similarity=0.492 Sum_probs=35.2
Q ss_pred ceeEEEEEEecCCCCCC-hHHHHHHHHHHhhhhc-CcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHH
Q 022676 188 GVEFVLLISFIQSAFGG-PAEDALESLKRLTAEF-PSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKE 265 (293)
Q Consensus 188 ~i~HIVl~kFk~~~s~e-~i~~l~~~l~~Lk~~i-Pg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~ 265 (293)
|++.+..+.|.+..... ..+++.+.|.++-.+. |. +|.++..... .||.|..
T Consensus 66 Gv~~~~~l~~~D~~~~~~~~~~~~~~l~~~i~~~~p~---------------------~V~t~~~~~~-----gH~DH~~ 119 (128)
T PF02585_consen 66 GVENVIFLDFPDGQLPGWSWEELVRDLEDLIREFRPD---------------------VVFTPDPDDG-----GHPDHRA 119 (128)
T ss_dssp T-EEEEEEEECTTSCTCHHHHHHHHHHHHHHHHH-ES---------------------EEEEE-STTS------SHHHHH
T ss_pred CCceEEEeecCCCCcccccHHHHHHHHHHHHHHcCCC---------------------EEEECCCCCC-----CcHHHHH
Confidence 67788888888766655 5677788787777655 55 3444443333 7999987
Q ss_pred HHH
Q 022676 266 MWS 268 (293)
Q Consensus 266 ~~~ 268 (293)
+..
T Consensus 120 ~~~ 122 (128)
T PF02585_consen 120 VAR 122 (128)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 55
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=23.55 E-value=2.2e+02 Score=21.61 Aligned_cols=40 Identities=10% Similarity=0.175 Sum_probs=31.0
Q ss_pred eEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeecc
Q 022676 190 EFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSN 232 (293)
Q Consensus 190 ~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N 232 (293)
++-|-+.+|+++..-+=+.+.+.|..| .+++ +.++..|.=
T Consensus 2 ~~~I~V~~k~gV~Dp~G~ti~~~l~~l--g~~~-v~~Vr~~k~ 41 (80)
T TIGR00302 2 KVEVYIRLKKGVLDPEGAAIQRALALL--GYNE-VKDVRTGKV 41 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHc--CCCC-cceEEEEEE
Confidence 456888999999998888888888886 4676 666766643
No 56
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=22.50 E-value=1.8e+02 Score=21.18 Aligned_cols=43 Identities=19% Similarity=0.082 Sum_probs=27.0
Q ss_pred EEEEEEecC------CCCCChHHHHHHHHHHhhhhc---CcceeeEEeeccCCC
Q 022676 191 FVLLISFIQ------SAFGGPAEDALESLKRLTAEF---PSLIVQSTQGSNFNL 235 (293)
Q Consensus 191 HIVl~kFk~------~~s~e~i~~l~~~l~~Lk~~i---Pg~I~~~t~G~N~Sp 235 (293)
|++.+- |+ +.++++..++...+..+...+ .+ ...+..+.|..+
T Consensus 20 h~lIip-k~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~n~g~ 71 (86)
T cd00468 20 HVLVCP-KRHVETLPDLDEALLADLVITAQRVAAELEKHGN-VPSLTVFVNDGA 71 (86)
T ss_pred cEEEeC-chhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcC-CCceEEEEcCCc
Confidence 776665 43 446667777766555554443 45 567888888866
No 57
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=21.97 E-value=1.1e+02 Score=24.88 Aligned_cols=66 Identities=20% Similarity=0.159 Sum_probs=42.5
Q ss_pred CCCCCcccCCCCcchhhhhhhhhhhhccCCceeEEEE--eecccccccccccCCCcEEEEEEEEecCCCCHHHHHHHHHH
Q 022676 20 RPNPGFLSSSVSLNVSRWNEAMSMRLSRERTVGTTVL--ASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDY 97 (293)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~mI~HIVlfK~K~~~s~e~~~~~~~~ 97 (293)
-|..||.-|+|-.-.|+|. .+...|+=-. ....-+..++. ||-+++.|- ..-++.++.|..+
T Consensus 8 dP~~~F~Ps~G~i~~~~~P--------~g~gvRvDt~~~~G~~v~~~yDs-----miaKliv~g---~~R~~Ai~~l~~A 71 (107)
T PF02785_consen 8 DPANGFLPSPGRITRYSPP--------GGPGVRVDTGVYSGYEVSPYYDS-----MIAKLIVHG---PDREEAIARLRRA 71 (107)
T ss_dssp ETTTTTEBSSEEESEEE-S--------SSTTEEEEESESTTCEE-SSSSS-----EEEEEEEEE---SSHHHHHHHHHHH
T ss_pred CCCCCCcCCcEEEeEEECC--------CCCCeeEEecCccccccCCCchh-----hhhhheeec---cchHHHHHHHHhh
Confidence 4777888888888777776 3344555432 22333344555 899999983 3355568888888
Q ss_pred HHhh
Q 022676 98 LYTS 101 (293)
Q Consensus 98 L~~L 101 (293)
|.++
T Consensus 72 L~e~ 75 (107)
T PF02785_consen 72 LAET 75 (107)
T ss_dssp HHHH
T ss_pred cceE
Confidence 8886
No 58
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=21.58 E-value=2e+02 Score=21.84 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=29.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEee
Q 022676 78 CLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGR 115 (293)
Q Consensus 78 VlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~ 115 (293)
|...+|++..+.+-+++.++|..| .++++.+++.|+
T Consensus 5 V~V~~k~gv~Dp~G~ai~~~l~~l--g~~~v~~Vr~~k 40 (80)
T PRK05974 5 VTVTLKEGVLDPQGQAIKGALGSL--GYDGVEDVRQGK 40 (80)
T ss_pred EEEEECCCCcChHHHHHHHHHHHc--CCCCcceEEEEE
Confidence 556789999999999999999986 367777777775
No 59
>PRK12864 YciI-like protein; Reviewed
Probab=20.54 E-value=4e+02 Score=20.46 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=44.2
Q ss_pred EEEEEEEecCCCCHH---HHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhc-cCcchHH
Q 022676 75 EHICLLKAKKDLSEE---EEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFY-ENPFYSK 149 (293)
Q Consensus 75 ~HIVlfK~K~~~s~e---~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~-~HP~H~~ 149 (293)
.-+|.+.-+++..+. ...+=++.|+.+.. .|..-. .|+...+ . | ..++.+++|.|+.+++. ..|..++
T Consensus 3 ~f~v~~~d~p~~~~~R~~~r~~H~~~l~~~~~--~G~~~~-~Gp~~~~-~-g--~~~i~~a~s~eea~~~~~~DPy~~a 74 (89)
T PRK12864 3 KFVLWGTYCEDALEKRAPFREAHLDRLAKLKE--QGILIT-LGPTKDL-T-Y--VFGIFEAEDEETVRQLIEADPYWQN 74 (89)
T ss_pred EEEEEEEeCCCcHHHHHHhHHHHHHHHHHHHh--CCeEEE-ecCCCCC-C-C--EEEEEEeCCHHHHHHHHHcCCchhc
Confidence 457777787775333 24555667777665 366444 4766543 2 2 23477999999999985 7787764
No 60
>PF13816 Dehydratase_hem: Haem-containing dehydratase; PDB: 3A18_C 3A17_F 3A15_C 3A16_D.
Probab=20.42 E-value=5.5e+02 Score=24.78 Aligned_cols=85 Identities=14% Similarity=0.113 Sum_probs=54.1
Q ss_pred CcEEEEEEEEecCCCCHHHHHHHHHHHHh--------hhhc--CCceEEEEEeecCCCCCCCc--cE-EEEEEECCHHHH
Q 022676 72 KVVEHICLLKAKKDLSEEEEKDMLDYLYT--------SQYQ--MGGIVAISLGRISNENVENY--TH-GVFMRFQRKEHL 138 (293)
Q Consensus 72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~--------L~~~--IPgv~~i~~G~~~s~~~~gy--th-aL~s~F~s~edL 138 (293)
.=|.||+-=+.=.+++++|.+.-++.+.. |.+. =-|..+.++..+....+.+- +- +=..-|.|.++|
T Consensus 174 dNl~~IRSGQdWs~~~~eEr~~Y~e~~eP~L~~gm~~L~d~~~e~Gc~s~R~~~~~d~~~~~~~~~~t~~l~yf~~L~~L 253 (310)
T PF13816_consen 174 DNLCHIRSGQDWSNCGPEERELYLENLEPVLREGMDFLRDNGDETGCYSLRFMRNLDPDSGNLDLDRTCGLGYFRSLSSL 253 (310)
T ss_dssp BTEEEEEEEEE-TT--HHHHHHHHHHTHHHHHHHHHHHHHSHHHHTEEEEEEEEEE-TT-S-E-EEEEEEEEEES-HHHH
T ss_pred CceEEEecCCccccCCHHHHHHHHHhccHHHHHHHHHHHhCCcccceEEEEeEeccCccccchhhhcccchhhhhhHHHH
Confidence 34788998888899999886555444433 3322 24888888887776532221 11 223569999999
Q ss_pred Hhhc-cCcchHHHHHHhhc
Q 022676 139 VKFY-ENPFYSKVLKEHVM 156 (293)
Q Consensus 139 ~~Y~-~HP~H~~vv~~~i~ 156 (293)
+..+ .||-|+++-+.+++
T Consensus 254 E~Wa~~H~tHl~If~~fm~ 272 (310)
T PF13816_consen 254 ERWARSHPTHLAIFRGFMK 272 (310)
T ss_dssp HHHHHHSHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHH
Confidence 9997 99999998887764
No 61
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.40 E-value=34 Score=26.32 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=20.5
Q ss_pred ccccceecCCCCccccccCCCCCcccCCCCcchhhh
Q 022676 2 IAQSLTVNPFPNSFLKCHRPNPGFLSSSVSLNVSRW 37 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (293)
+++.+.-||+| .++-|||= |+++|..--|.|
T Consensus 38 Vg~al~~np~~-~~iPcHRV----v~s~G~l~~y~~ 68 (80)
T TIGR00589 38 VGGANGRNPLA-ILVPCHRV----IGKNGSLTGYAG 68 (80)
T ss_pred HHHHHHhCCCC-CCCCCcee----ECCCCCCCCCCC
Confidence 34567789998 48999993 555554444444
Done!