BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022677
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OY0|A Chain A, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
pdb|1OY0|B Chain B, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
pdb|1OY0|C Chain C, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
pdb|1OY0|D Chain D, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
pdb|1OY0|E Chain E, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
Length = 281
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 144/233 (61%), Gaps = 6/233 (2%)
Query: 61 IPENSVYGGPKP--QNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV 118
+ E ++YG P P ++ HL++ +G M+TAYDY +A D AGI + LV
Sbjct: 1 MSEQTIYGANTPGGSGPRTKIRTHHLQRWKADGHKWAMLTAYDYSTARIFDEAGIPVLLV 60
Query: 119 GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178
GDSAA VV+G+DTT+PI+++E++ R V RGA L+V DLPFG+YE+ A+ A R
Sbjct: 61 GDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAATR 120
Query: 179 ILKEGGMDAIKLEGGSPSRITAARG-IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237
LK+GG A+KLEGG R+ + AGI VM H+G TPQ+++ LGGFR QG+ +
Sbjct: 121 FLKDGGAHAVKLEGG--ERVAEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRG-DA 177
Query: 238 AVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQV 290
A + + A+A+ E G F+VV+E T L IPT+GIGAGP C GQV
Sbjct: 178 AEQTIADAIAVAEAGAFAVVMEMVPAELATQITGKLTIPTVGIGAGPNCDGQV 230
>pdb|3EZ4|A Chain A, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|B Chain B, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|C Chain C, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|D Chain D, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|E Chain E, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|F Chain F, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|G Chain G, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|H Chain H, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|I Chain I, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
pdb|3EZ4|J Chain J, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Pseudomallei
Length = 269
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 125/212 (58%), Gaps = 3/212 (1%)
Query: 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLE 138
VT+ L+ + GE I M+T+YD A LD A +D+ L+GDS V+ G TTLP+TL+
Sbjct: 10 VTVPKLQAMREAGEKIAMLTSYDASFAALLDRANVDVQLIGDSLGNVLQGQATTLPVTLD 69
Query: 139 EMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRI 198
++ H VAR R L+V DLPFGTY + + A +AV++++ G +KLEGG
Sbjct: 70 DIAYHTACVARAQPRGLVVADLPFGTYGTPAD-AFASAVKLMRAGA-QMVKLEGGEWLAE 127
Query: 199 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258
T R +VE + V HVGLTPQ++ GGF+ QGK A +++ A A++E G +VL
Sbjct: 128 T-VRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVL 186
Query: 259 ECXXXXXXXXXTSALQIPTIGIGAGPFCSGQV 290
E T L IPTIGIGAG CSGQV
Sbjct: 187 EAVPTLVAAEVTRELSIPTIGIGAGAECSGQV 218
>pdb|3VAV|A Chain A, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|B Chain B, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|C Chain C, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|D Chain D, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|E Chain E, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|F Chain F, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|G Chain G, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|H Chain H, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|I Chain I, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
pdb|3VAV|J Chain J, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase From Burkholderia Thailandensis
Length = 275
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 123/212 (58%), Gaps = 3/212 (1%)
Query: 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLE 138
VT+ L+ + GE I M+T YD A LD A +D+ L+GDS V+ G TTLP+TL+
Sbjct: 16 VTVPKLQAMREAGEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLD 75
Query: 139 EMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRI 198
++ H VAR R L+V DLPFGTY + + A +AV++++ G +K EGG
Sbjct: 76 DIAYHTACVARAQPRALIVADLPFGTYGTPAD-AFASAVKLMR-AGAQMVKFEGGEWLAE 133
Query: 199 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258
T R +VE + V HVGLTPQ++ GGF+ QGK A +++ A A++E G +VL
Sbjct: 134 T-VRFLVERAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVL 192
Query: 259 ECXXXXXXXXXTSALQIPTIGIGAGPFCSGQV 290
E T L IPTIGIGAG CSGQV
Sbjct: 193 EAVPTLVAAEVTRELSIPTIGIGAGAECSGQV 224
>pdb|1M3U|A Chain A, Crystal Structure Of Ketopantoate Hydroxymethyltransferase
Complexed The Product Ketopantoate
pdb|1M3U|B Chain B, Crystal Structure Of Ketopantoate Hydroxymethyltransferase
Complexed The Product Ketopantoate
pdb|1M3U|C Chain C, Crystal Structure Of Ketopantoate Hydroxymethyltransferase
Complexed The Product Ketopantoate
pdb|1M3U|D Chain D, Crystal Structure Of Ketopantoate Hydroxymethyltransferase
Complexed The Product Ketopantoate
pdb|1M3U|E Chain E, Crystal Structure Of Ketopantoate Hydroxymethyltransferase
Complexed The Product Ketopantoate
pdb|1M3U|F Chain F, Crystal Structure Of Ketopantoate Hydroxymethyltransferase
Complexed The Product Ketopantoate
pdb|1M3U|G Chain G, Crystal Structure Of Ketopantoate Hydroxymethyltransferase
Complexed The Product Ketopantoate
pdb|1M3U|H Chain H, Crystal Structure Of Ketopantoate Hydroxymethyltransferase
Complexed The Product Ketopantoate
pdb|1M3U|I Chain I, Crystal Structure Of Ketopantoate Hydroxymethyltransferase
Complexed The Product Ketopantoate
pdb|1M3U|J Chain J, Crystal Structure Of Ketopantoate Hydroxymethyltransferase
Complexed The Product Ketopantoate
Length = 264
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 123/211 (58%), Gaps = 3/211 (1%)
Query: 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEE 139
T++ L++ + + +TAYDY A G+++ LVGDS M V GHD+TLP+T+ +
Sbjct: 5 TISLLQKYKQEKKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVAD 64
Query: 140 MLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRIT 199
+ H AV RGA LL+ DLPF Y ++ QA + A +++ G + +K+EGG +
Sbjct: 65 IAYHTAAVRRGAPNCLLLADLPFMAY-ATPEQAFENAATVMRAGA-NMVKIEGGE-WLVE 121
Query: 200 AARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259
+ + E + V GH+GLTPQ++++ GG++ QG+ + +++ ALAL+ G +VLE
Sbjct: 122 TVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVLE 181
Query: 260 CXXXXXXXXXTSALQIPTIGIGAGPFCSGQV 290
C T AL IP IGIGAG GQ+
Sbjct: 182 CVPVELAKRITEALAIPVIGIGAGNVTDGQI 212
>pdb|1O66|A Chain A, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O66|B Chain B, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O66|C Chain C, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O66|D Chain D, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O66|E Chain E, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O68|A Chain A, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O68|B Chain B, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O68|C Chain C, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O68|D Chain D, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
pdb|1O68|E Chain E, Crystal Structure Of 3-Methyl-2-Oxobutanoate
Hydroxymethyltransferase
Length = 275
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 109/212 (51%), Gaps = 3/212 (1%)
Query: 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLE 138
+T+ L++ GE I +TAY+ A D AG++ LVGDS V G +TLP++L
Sbjct: 4 ITVNTLQKXKAAGEKIAXLTAYESSFAALXDDAGVEXLLVGDSLGXAVQGRKSTLPVSLR 63
Query: 139 EMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRI 198
+ H VARGAK +V DLPFG Y+ S QA A + G +KLEGG
Sbjct: 64 DXCYHTECVARGAKNAXIVSDLPFGAYQQSKEQAFAAAAELXAA-GAHXVKLEGGVWXAE 122
Query: 199 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258
T + GI V H+GLTPQ++ GG++ QG+ A ++ A A + G V+
Sbjct: 123 T-TEFLQXRGIPVCAHIGLTPQSVFAFGGYKVQGRG-GKAQALLNDAKAHDDAGAAVVLX 180
Query: 259 ECXXXXXXXXXTSALQIPTIGIGAGPFCSGQV 290
EC T + PTIGIGAG C GQV
Sbjct: 181 ECVLAELAKKVTETVSCPTIGIGAGADCDGQV 212
>pdb|2OQH|A Chain A, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|B Chain B, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|C Chain C, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|D Chain D, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
Length = 385
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192
D P T + AVR+++EGG DA+KL+G
Sbjct: 138 DAPGATPADLPKAXAEHAVRVVEEGGFDAVKLKG 171
>pdb|3IF8|A Chain A, Crystal Structure Of Zwilch, A Member Of The Rzz
Kinetochore
Length = 339
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 22/110 (20%)
Query: 39 NSNMSFSRIN----RARPLLVRCMSNIPENSVYGGPK------------------PQNPN 76
N NM+ +IN PL VRC S+ PE + + G + + N
Sbjct: 123 NPNMTHLKINLPVTALPPLWVRCDSSDPEGTCWLGAELITTNNSITGIVLYVVSCKADKN 182
Query: 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVV 126
V L +L+ HK ++ VT+ + S+ +D + A+ +
Sbjct: 183 YSVNLENLKNLHKKRHHLSTVTSKGFAQYELFKSSALDDTITASQTAIAL 232
>pdb|4DYE|A Chain A, Crystal Structure Of An Enolase (Putative Sugar Isomerase,
Target Efi- 502095) From Streptomyces Coelicolor, No Mg,
Ordered Loop
Length = 398
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192
D P T + AVR+++EGG DA+KL+G
Sbjct: 159 DAPGATPADLPKAMAEHAVRVVEEGGFDAVKLKG 192
>pdb|1PX5|A Chain A, Crystal Structure Of The 2'-Specific And Double-Stranded
Rna-Activated Interferon-Induced Antiviral Protein
2'-5'- Oligoadenylate Synthetase
pdb|1PX5|B Chain B, Crystal Structure Of The 2'-Specific And Double-Stranded
Rna-Activated Interferon-Induced Antiviral Protein
2'-5'- Oligoadenylate Synthetase
Length = 349
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 160 LPFGTYESSTNQAVDTAVRILKE----GGMDAIK----LEGGSPSRITAARGIVEAGIAV 211
LP + + +A+D R LKE G D ++ ++GGS + T RG +A + V
Sbjct: 20 LPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVV 79
Query: 212 MGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL-ALQEVGCFSVVLE 259
++ L F Q + ++ + L A Q F V E
Sbjct: 80 F---------LTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFE 119
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
Length = 199
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 70 PKPQNPNQR--VTLTHLRQKHKNGEPITMV 97
P+P PNQ+ V+L HL++K+ EPI +V
Sbjct: 1 PRPPLPNQQFGVSLQHLQEKNPEQEPIPIV 30
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 23/117 (19%)
Query: 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162
P+ HLD+A I I L GD AA ++ G D PI G ++P+
Sbjct: 214 PNETHLDNA-IGISLFGDGAAALIIGSD---PII-------------GVEKPMFE---IV 253
Query: 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTP 219
T ++ D L+E GM L GSP +T + + I V VG+TP
Sbjct: 254 CTKQTVIPNTEDVIHLHLRETGM-MFYLSKGSP--MTISNNVEACLIDVFKSVGITP 307
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 23/117 (19%)
Query: 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162
P+ HLD+A I I L GD AA ++ G D PI G ++P+
Sbjct: 214 PNETHLDNA-IGISLFGDGAAALIIGSD---PII-------------GVEKPMFE---IV 253
Query: 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTP 219
T ++ D L+E GM L GSP +T + + I V VG+TP
Sbjct: 254 CTKQTVIPNTEDVIHLHLRETGM-MFYLSKGSP--MTISNNVEACLIDVFKSVGITP 307
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 142 VHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAA 201
VH R + G L G L G Y +T V+ + E G+D +KL+G S A
Sbjct: 93 VHARGLKLGIYGDL--GRLTCGGYPGTTLDRVEQDAQTFAEWGVDMLKLDGCYSSGKEQA 150
Query: 202 RG 203
+G
Sbjct: 151 QG 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,027,406
Number of Sequences: 62578
Number of extensions: 316589
Number of successful extensions: 837
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 823
Number of HSP's gapped (non-prelim): 20
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)