Query 022677
Match_columns 293
No_of_seqs 182 out of 1101
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:20:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02424 ketopantoate hydroxym 100.0 7.3E-81 1.6E-85 591.3 28.3 236 58-293 1-236 (332)
2 PF02548 Pantoate_transf: Keto 100.0 8.2E-81 1.8E-85 575.9 21.9 216 77-293 1-216 (261)
3 COG0413 PanB Ketopantoate hydr 100.0 2.4E-78 5.3E-83 555.6 23.6 215 78-293 1-215 (268)
4 TIGR00222 panB 3-methyl-2-oxob 100.0 6.6E-76 1.4E-80 544.7 26.5 214 78-293 1-214 (263)
5 PRK00311 panB 3-methyl-2-oxobu 100.0 1.2E-74 2.5E-79 537.3 26.1 215 78-293 1-215 (264)
6 KOG2949 Ketopantoate hydroxyme 100.0 2.8E-75 6E-80 528.1 20.8 222 72-293 18-239 (306)
7 cd06557 KPHMT-like Ketopantoat 100.0 1.9E-72 4.1E-77 520.1 24.8 212 81-293 1-212 (254)
8 cd06556 ICL_KPHMT Members of t 100.0 2.4E-58 5.1E-63 423.0 23.9 209 82-293 2-210 (240)
9 cd00377 ICL_PEPM Members of th 100.0 3.4E-35 7.5E-40 269.4 17.1 184 84-284 1-206 (243)
10 PRK11320 prpB 2-methylisocitra 100.0 3.8E-33 8.1E-38 262.8 17.6 180 82-278 7-206 (292)
11 TIGR02319 CPEP_Pphonmut carbox 100.0 6.7E-33 1.4E-37 261.4 18.4 179 82-277 6-204 (294)
12 TIGR02317 prpB methylisocitrat 100.0 6.9E-33 1.5E-37 260.3 17.8 179 83-278 4-201 (285)
13 PF13714 PEP_mutase: Phosphoen 100.0 1.6E-32 3.4E-37 252.0 17.9 180 84-281 1-198 (238)
14 COG2513 PrpB PEP phosphonomuta 100.0 1.6E-32 3.5E-37 256.6 17.6 179 81-276 7-204 (289)
15 TIGR02321 Pphn_pyruv_hyd phosp 100.0 5.3E-31 1.2E-35 248.1 18.9 188 82-286 5-218 (290)
16 TIGR02320 PEP_mutase phosphoen 100.0 2.1E-28 4.6E-33 230.0 18.6 180 84-281 1-218 (285)
17 PRK15063 isocitrate lyase; Pro 99.9 1.4E-24 3E-29 212.8 16.2 191 78-285 49-316 (428)
18 TIGR01346 isocit_lyase isocitr 99.3 1.5E-11 3.3E-16 123.6 8.7 106 84-194 51-188 (527)
19 COG2224 AceA Isocitrate lyase 98.8 6.9E-09 1.5E-13 101.7 8.1 189 79-284 49-321 (433)
20 PRK06498 isocitrate lyase; Pro 98.4 7.7E-07 1.7E-11 89.4 9.5 144 78-237 47-264 (531)
21 KOG1260 Isocitrate lyase [Ener 98.3 5.6E-06 1.2E-10 82.3 12.6 162 83-260 56-259 (492)
22 PLN02892 isocitrate lyase 98.2 8.7E-06 1.9E-10 83.1 11.2 167 84-278 70-271 (570)
23 TIGR03151 enACPred_II putative 97.7 0.0044 9.6E-08 59.2 18.2 152 84-281 4-168 (307)
24 PRK07259 dihydroorotate dehydr 97.6 0.0058 1.2E-07 57.5 18.3 166 92-282 13-242 (301)
25 PRK08185 hypothetical protein; 97.6 0.0063 1.4E-07 57.9 17.9 179 84-285 5-209 (283)
26 PRK13585 1-(5-phosphoribosyl)- 97.6 0.0015 3.2E-08 59.2 13.1 156 104-282 37-201 (241)
27 PF00463 ICL: Isocitrate lyase 97.5 0.00062 1.3E-08 69.3 10.2 115 90-220 56-204 (526)
28 cd04740 DHOD_1B_like Dihydroor 97.5 0.013 2.8E-07 54.9 18.4 122 136-282 73-239 (296)
29 TIGR01859 fruc_bis_ald_ fructo 97.5 0.024 5.2E-07 53.8 20.2 176 84-282 8-208 (282)
30 cd02810 DHOD_DHPD_FMN Dihydroo 97.4 0.016 3.5E-07 53.8 18.3 125 135-282 80-251 (289)
31 cd00945 Aldolase_Class_I Class 97.4 0.023 4.9E-07 48.6 17.1 81 103-193 69-151 (201)
32 cd04732 HisA HisA. Phosphorib 97.4 0.004 8.7E-08 55.9 12.8 153 104-281 34-197 (234)
33 PRK06801 hypothetical protein; 97.3 0.027 5.8E-07 53.7 18.4 183 79-283 4-212 (286)
34 PRK06806 fructose-bisphosphate 97.3 0.055 1.2E-06 51.4 20.3 180 79-283 4-209 (281)
35 cd00945 Aldolase_Class_I Class 97.2 0.031 6.7E-07 47.8 16.1 142 105-282 19-180 (201)
36 cd04730 NPD_like 2-Nitropropan 97.2 0.032 7E-07 50.0 16.8 143 96-282 10-164 (236)
37 PF09370 TIM-br_sig_trns: TIM- 97.1 0.0036 7.8E-08 59.2 10.1 100 81-189 4-113 (268)
38 COG2513 PrpB PEP phosphonomuta 97.1 0.016 3.6E-07 55.3 14.6 137 103-262 97-237 (289)
39 TIGR00735 hisF imidazoleglycer 97.1 0.011 2.5E-07 54.5 13.3 162 101-281 31-206 (254)
40 TIGR01037 pyrD_sub1_fam dihydr 97.1 0.034 7.3E-07 52.2 16.6 154 101-282 24-242 (300)
41 TIGR01769 GGGP geranylgeranylg 97.1 0.018 3.9E-07 52.4 14.2 149 104-283 16-184 (205)
42 cd00958 DhnA Class I fructose- 97.1 0.018 4E-07 52.0 13.8 103 168-282 74-187 (235)
43 TIGR03572 WbuZ glycosyl amidat 97.0 0.042 9.2E-07 49.6 15.6 159 104-284 35-207 (232)
44 cd04731 HisF The cyclase subun 97.0 0.018 3.9E-07 52.4 13.0 157 103-281 31-200 (243)
45 TIGR02317 prpB methylisocitrat 97.0 0.035 7.6E-07 52.9 15.3 105 105-215 94-204 (285)
46 PRK08610 fructose-bisphosphate 97.0 0.21 4.6E-06 47.7 20.6 186 79-287 4-215 (286)
47 PRK00748 1-(5-phosphoribosyl)- 96.9 0.023 4.9E-07 51.0 13.1 155 100-281 30-197 (233)
48 PRK07709 fructose-bisphosphate 96.9 0.24 5.2E-06 47.3 20.5 186 79-287 4-215 (285)
49 PRK07998 gatY putative fructos 96.9 0.27 5.8E-06 47.0 20.4 184 79-287 4-211 (283)
50 PRK01130 N-acetylmannosamine-6 96.9 0.068 1.5E-06 48.0 15.7 128 104-281 28-180 (221)
51 cd00947 TBP_aldolase_IIB Tagat 96.8 0.29 6.3E-06 46.5 20.3 178 84-287 5-208 (276)
52 PRK12857 fructose-1,6-bisphosp 96.8 0.36 7.7E-06 46.1 20.8 184 79-287 4-214 (284)
53 COG0826 Collagenase and relate 96.8 0.14 3.1E-06 50.1 18.3 169 91-290 5-180 (347)
54 TIGR00167 cbbA ketose-bisphosp 96.8 0.31 6.8E-06 46.6 20.1 186 79-287 4-218 (288)
55 TIGR00737 nifR3_yhdG putative 96.7 0.028 6.1E-07 53.5 12.5 155 96-281 15-199 (319)
56 PRK07315 fructose-bisphosphate 96.7 0.2 4.4E-06 47.8 18.1 179 79-283 4-211 (293)
57 PRK02083 imidazole glycerol ph 96.7 0.039 8.5E-07 50.7 12.8 159 103-282 34-205 (253)
58 cd04727 pdxS PdxS is a subunit 96.6 0.13 2.7E-06 49.3 16.1 113 84-215 3-119 (283)
59 COG0107 HisF Imidazoleglycerol 96.6 0.054 1.2E-06 50.7 13.2 169 84-280 23-205 (256)
60 cd04743 NPD_PKS 2-Nitropropane 96.5 0.086 1.9E-06 51.2 14.5 114 132-278 34-169 (320)
61 cd00377 ICL_PEPM Members of th 96.4 0.043 9.3E-07 50.8 11.6 133 105-262 90-229 (243)
62 TIGR02320 PEP_mutase phosphoen 96.4 0.072 1.6E-06 50.8 13.1 106 105-214 98-217 (285)
63 PF03437 BtpA: BtpA family; I 96.4 0.18 3.9E-06 47.5 15.4 157 104-285 34-210 (254)
64 PRK07565 dihydroorotate dehydr 96.4 0.15 3.2E-06 49.0 15.2 128 126-281 78-246 (334)
65 COG3010 NanE Putative N-acetyl 96.4 0.065 1.4E-06 49.4 11.9 96 80-192 115-210 (229)
66 TIGR01858 tag_bisphos_ald clas 96.3 0.91 2E-05 43.3 20.2 180 84-287 8-212 (282)
67 PF04131 NanE: Putative N-acet 96.3 0.048 1E-06 49.4 10.6 94 79-191 79-173 (192)
68 PRK12738 kbaY tagatose-bisphos 96.3 1.1 2.4E-05 42.8 20.5 185 79-287 4-214 (286)
69 PRK11320 prpB 2-methylisocitra 96.2 0.088 1.9E-06 50.4 12.8 105 105-215 99-209 (292)
70 PRK07475 hypothetical protein; 96.2 0.14 3E-06 47.4 13.8 146 104-280 70-225 (245)
71 TIGR01949 AroFGH_arch predicte 96.2 0.071 1.5E-06 49.4 11.8 109 159-281 80-199 (258)
72 TIGR00736 nifR3_rel_arch TIM-b 96.2 0.26 5.6E-06 45.7 15.4 120 137-282 54-199 (231)
73 TIGR02319 CPEP_Pphonmut carbox 96.2 0.078 1.7E-06 50.9 12.2 105 104-214 97-207 (294)
74 cd04739 DHOD_like Dihydroorota 96.2 0.54 1.2E-05 45.2 18.1 121 136-281 83-244 (325)
75 PRK10415 tRNA-dihydrouridine s 96.2 0.2 4.3E-06 48.1 14.9 157 96-282 17-202 (321)
76 cd04728 ThiG Thiazole synthase 96.1 0.12 2.6E-06 48.6 12.6 137 104-278 25-179 (248)
77 PRK14024 phosphoribosyl isomer 96.1 0.17 3.6E-06 46.6 13.5 150 104-281 37-197 (241)
78 PRK09195 gatY tagatose-bisphos 96.1 1.4 3E-05 42.2 20.6 184 79-287 4-214 (284)
79 cd02810 DHOD_DHPD_FMN Dihydroo 96.0 0.39 8.4E-06 44.6 15.7 95 91-192 98-197 (289)
80 TIGR02990 ectoine_eutA ectoine 96.0 0.15 3.1E-06 47.4 12.6 161 78-279 46-211 (239)
81 PF13714 PEP_mutase: Phosphoen 95.9 0.034 7.3E-07 51.6 8.2 131 102-262 88-222 (238)
82 TIGR00737 nifR3_yhdG putative 95.9 0.58 1.3E-05 44.6 16.8 124 88-214 59-198 (319)
83 cd06556 ICL_KPHMT Members of t 95.9 0.08 1.7E-06 49.2 10.6 88 105-214 95-197 (240)
84 cd07937 DRE_TIM_PC_TC_5S Pyruv 95.9 0.37 7.9E-06 45.3 15.1 154 103-276 25-194 (275)
85 cd06557 KPHMT-like Ketopantoat 95.9 0.076 1.7E-06 49.9 10.3 90 104-214 96-199 (254)
86 PRK00278 trpC indole-3-glycero 95.9 0.31 6.8E-06 45.5 14.3 136 102-284 73-221 (260)
87 PRK04180 pyridoxal biosynthesi 95.8 0.27 5.9E-06 47.2 14.0 112 83-215 11-128 (293)
88 PLN02274 inosine-5'-monophosph 95.8 0.069 1.5E-06 54.7 10.7 100 82-191 278-380 (505)
89 PRK14042 pyruvate carboxylase 95.8 0.33 7.3E-06 50.8 15.7 157 103-277 30-200 (596)
90 PF05690 ThiG: Thiazole biosyn 95.8 0.12 2.7E-06 48.3 11.1 102 156-283 65-187 (247)
91 TIGR02321 Pphn_pyruv_hyd phosp 95.8 0.19 4.2E-06 48.0 12.7 152 104-259 95-264 (290)
92 cd02801 DUS_like_FMN Dihydrour 95.8 1.2 2.5E-05 39.7 17.1 127 84-214 47-189 (231)
93 PRK00208 thiG thiazole synthas 95.7 0.21 4.6E-06 47.0 12.6 136 104-278 26-179 (250)
94 cd04740 DHOD_1B_like Dihydroor 95.7 1 2.2E-05 42.1 17.3 89 94-190 93-185 (296)
95 cd00331 IGPS Indole-3-glycerol 95.7 0.4 8.7E-06 42.8 13.9 134 104-284 36-182 (217)
96 PRK12737 gatY tagatose-bisphos 95.7 2.1 4.5E-05 41.0 20.3 185 79-287 4-214 (284)
97 cd00408 DHDPS-like Dihydrodipi 95.7 0.15 3.3E-06 47.2 11.5 78 104-194 84-162 (281)
98 TIGR00007 phosphoribosylformim 95.7 0.28 6.1E-06 44.1 12.9 151 104-279 33-194 (230)
99 cd02911 arch_FMN Archeal FMN-b 95.7 0.68 1.5E-05 42.6 15.6 104 151-281 71-198 (233)
100 cd00954 NAL N-Acetylneuraminic 95.7 0.14 3.1E-06 48.0 11.4 78 104-194 88-167 (288)
101 cd02940 DHPD_FMN Dihydropyrimi 95.7 0.61 1.3E-05 44.2 15.6 134 125-282 68-260 (299)
102 PRK12581 oxaloacetate decarbox 95.7 0.53 1.1E-05 48.0 16.0 160 101-277 37-209 (468)
103 cd04722 TIM_phosphate_binding 95.7 0.52 1.1E-05 39.4 13.7 144 104-282 17-178 (200)
104 PRK10550 tRNA-dihydrouridine s 95.6 0.17 3.7E-06 48.6 11.9 161 97-282 9-202 (312)
105 cd04729 NanE N-acetylmannosami 95.6 0.84 1.8E-05 41.0 15.6 129 104-281 32-184 (219)
106 PRK06843 inosine 5-monophospha 95.6 0.13 2.8E-06 51.4 11.2 100 81-191 185-285 (404)
107 PRK00311 panB 3-methyl-2-oxobu 95.5 0.15 3.3E-06 48.2 10.9 94 104-219 99-206 (264)
108 TIGR00674 dapA dihydrodipicoli 95.5 0.092 2E-06 49.2 9.3 77 104-193 85-162 (285)
109 cd00950 DHDPS Dihydrodipicolin 95.5 0.16 3.5E-06 47.2 10.9 78 104-194 87-165 (284)
110 PRK14040 oxaloacetate decarbox 95.5 0.6 1.3E-05 48.9 16.0 155 103-277 31-201 (593)
111 PRK12331 oxaloacetate decarbox 95.4 0.34 7.3E-06 49.0 13.7 155 102-277 29-200 (448)
112 TIGR00343 pyridoxal 5'-phospha 95.4 1.1 2.4E-05 43.1 16.3 113 84-215 5-121 (287)
113 cd02809 alpha_hydroxyacid_oxid 95.4 0.89 1.9E-05 43.0 15.8 134 101-281 83-234 (299)
114 PRK11815 tRNA-dihydrouridine s 95.4 0.21 4.6E-06 48.2 11.7 110 153-281 65-212 (333)
115 COG0821 gcpE 1-hydroxy-2-methy 95.4 0.34 7.4E-06 47.5 13.0 153 108-290 45-212 (361)
116 PRK00366 ispG 4-hydroxy-3-meth 95.4 0.52 1.1E-05 46.5 14.2 153 108-290 51-219 (360)
117 PRK10550 tRNA-dihydrouridine s 95.3 0.61 1.3E-05 44.8 14.6 121 92-216 63-202 (312)
118 PRK09140 2-dehydro-3-deoxy-6-p 95.3 2.1 4.5E-05 38.8 17.9 146 86-282 5-159 (206)
119 TIGR00742 yjbN tRNA dihydrouri 95.3 0.3 6.4E-06 47.1 12.4 109 153-281 55-202 (318)
120 cd02809 alpha_hydroxyacid_oxid 95.3 0.16 3.4E-06 48.1 10.3 97 79-191 159-256 (299)
121 cd04738 DHOD_2_like Dihydrooro 95.3 0.98 2.1E-05 43.4 15.8 169 92-282 50-288 (327)
122 PF04481 DUF561: Protein of un 95.3 0.19 4.1E-06 46.7 10.3 90 95-194 64-155 (242)
123 cd00951 KDGDH 5-dehydro-4-deox 95.3 0.31 6.7E-06 45.9 12.1 96 166-281 17-132 (289)
124 PRK03170 dihydrodipicolinate s 95.3 0.2 4.3E-06 46.9 10.8 78 104-194 88-166 (292)
125 TIGR00612 ispG_gcpE 1-hydroxy- 95.2 0.6 1.3E-05 45.8 14.1 152 108-290 43-210 (346)
126 TIGR00683 nanA N-acetylneurami 95.2 0.24 5.2E-06 46.8 11.3 78 104-194 88-167 (290)
127 PRK11815 tRNA-dihydrouridine s 95.2 0.55 1.2E-05 45.4 13.9 125 88-214 61-211 (333)
128 cd00381 IMPDH IMPDH: The catal 95.2 0.23 5.1E-06 47.8 11.3 100 81-190 123-225 (325)
129 PRK12330 oxaloacetate decarbox 95.2 0.8 1.7E-05 47.1 15.5 153 104-277 32-203 (499)
130 PRK08645 bifunctional homocyst 95.2 0.47 1E-05 49.5 14.2 160 110-282 54-232 (612)
131 TIGR01302 IMP_dehydrog inosine 95.1 0.25 5.4E-06 49.6 11.6 91 91-191 265-356 (450)
132 TIGR00674 dapA dihydrodipicoli 95.1 0.33 7.2E-06 45.4 11.8 96 167-281 16-131 (285)
133 PF03060 NMO: Nitronate monoox 95.1 0.84 1.8E-05 43.9 14.7 162 84-288 4-202 (330)
134 PRK13111 trpA tryptophan synth 95.1 1.7 3.7E-05 40.8 16.4 124 84-212 3-146 (258)
135 PRK00208 thiG thiazole synthas 95.1 0.2 4.4E-06 47.1 10.1 94 79-193 111-206 (250)
136 PRK03170 dihydrodipicolinate s 95.1 0.42 9.1E-06 44.8 12.3 96 167-281 19-134 (292)
137 CHL00162 thiG thiamin biosynth 95.1 0.38 8.3E-06 45.6 11.9 94 163-283 79-197 (267)
138 PRK05458 guanosine 5'-monophos 95.0 0.23 4.9E-06 48.4 10.7 88 93-192 141-231 (326)
139 PRK07028 bifunctional hexulose 95.0 0.93 2E-05 45.0 15.3 135 107-281 24-169 (430)
140 PRK04147 N-acetylneuraminate l 95.0 0.21 4.5E-06 47.0 10.2 78 104-194 91-169 (293)
141 cd00408 DHDPS-like Dihydrodipi 95.0 0.23 5.1E-06 45.9 10.4 96 166-280 14-129 (281)
142 cd08205 RuBisCO_IV_RLP Ribulos 95.0 0.39 8.4E-06 47.3 12.4 126 141-283 118-256 (367)
143 PF04131 NanE: Putative N-acet 95.0 0.87 1.9E-05 41.4 13.4 92 103-215 3-99 (192)
144 COG0042 tRNA-dihydrouridine sy 94.9 0.31 6.6E-06 47.1 11.3 99 167-281 76-205 (323)
145 PRK09282 pyruvate carboxylase 94.9 0.46 1E-05 49.6 13.3 162 96-280 23-202 (592)
146 PRK07535 methyltetrahydrofolat 94.9 1.9 4.2E-05 40.4 16.3 168 79-284 10-198 (261)
147 TIGR00736 nifR3_rel_arch TIM-b 94.9 1 2.3E-05 41.7 14.3 124 106-258 87-219 (231)
148 cd04728 ThiG Thiazole synthase 94.9 0.24 5.1E-06 46.6 10.0 94 79-193 111-206 (248)
149 TIGR02313 HpaI-NOT-DapA 2,4-di 94.9 0.51 1.1E-05 44.6 12.5 97 167-282 18-135 (294)
150 COG0329 DapA Dihydrodipicolina 94.9 0.26 5.6E-06 47.0 10.4 95 167-280 22-136 (299)
151 TIGR02313 HpaI-NOT-DapA 2,4-di 94.8 0.23 5.1E-06 47.0 10.0 78 104-194 87-167 (294)
152 PRK05437 isopentenyl pyrophosp 94.8 1.5 3.3E-05 42.8 15.8 147 102-281 80-268 (352)
153 PRK07534 methionine synthase I 94.8 1 2.2E-05 43.9 14.5 161 110-282 56-240 (336)
154 PRK07226 fructose-bisphosphate 94.8 1.3 2.8E-05 41.3 14.7 119 152-282 73-204 (267)
155 TIGR01303 IMP_DH_rel_1 IMP deh 94.7 0.87 1.9E-05 46.4 14.4 70 102-193 227-296 (475)
156 PRK05567 inosine 5'-monophosph 94.7 0.35 7.5E-06 49.1 11.6 91 91-191 269-360 (486)
157 TIGR00259 thylakoid_BtpA membr 94.7 0.75 1.6E-05 43.4 13.0 156 104-285 33-210 (257)
158 TIGR00742 yjbN tRNA dihydrouri 94.7 1.4 3E-05 42.6 15.1 124 89-214 52-201 (318)
159 TIGR03217 4OH_2_O_val_ald 4-hy 94.7 1.4 2.9E-05 42.9 15.1 148 104-280 29-193 (333)
160 TIGR03151 enACPred_II putative 94.7 0.33 7.1E-06 46.5 10.7 89 83-191 101-190 (307)
161 PRK04147 N-acetylneuraminate l 94.7 0.43 9.4E-06 44.9 11.4 96 167-281 21-137 (293)
162 COG2022 ThiG Uncharacterized e 94.6 0.14 3E-06 48.1 7.7 96 163-284 78-195 (262)
163 cd02801 DUS_like_FMN Dihydrour 94.6 1.2 2.6E-05 39.6 13.6 153 97-281 8-190 (231)
164 PRK08195 4-hyroxy-2-oxovalerat 94.6 0.86 1.9E-05 44.3 13.5 141 104-273 30-186 (337)
165 PRK05286 dihydroorotate dehydr 94.6 4.8 0.0001 39.1 18.6 167 93-282 61-297 (344)
166 COG0352 ThiE Thiamine monophos 94.6 0.59 1.3E-05 42.8 11.6 103 139-282 52-166 (211)
167 PRK07259 dihydroorotate dehydr 94.6 1.2 2.5E-05 42.0 14.0 88 94-190 95-188 (301)
168 PRK01033 imidazole glycerol ph 94.5 0.82 1.8E-05 42.5 12.7 153 104-281 35-203 (258)
169 PRK07807 inosine 5-monophospha 94.5 0.32 6.9E-06 49.6 10.6 89 92-191 268-359 (479)
170 cd00952 CHBPH_aldolase Trans-o 94.4 0.6 1.3E-05 44.6 11.8 97 166-281 25-142 (309)
171 cd00452 KDPG_aldolase KDPG and 94.4 3.3 7E-05 36.5 15.6 138 92-282 5-151 (190)
172 TIGR01306 GMP_reduct_2 guanosi 94.4 0.33 7.2E-06 47.2 10.0 92 81-191 128-227 (321)
173 TIGR01305 GMP_reduct_1 guanosi 94.4 0.32 7E-06 47.7 9.9 70 100-191 107-178 (343)
174 TIGR01949 AroFGH_arch predicte 94.4 0.98 2.1E-05 41.8 12.8 126 105-258 96-226 (258)
175 PF00701 DHDPS: Dihydrodipicol 94.4 0.37 8E-06 45.0 10.1 95 168-281 20-134 (289)
176 PLN02489 homocysteine S-methyl 94.4 2.7 6E-05 40.8 16.4 119 154-283 133-276 (335)
177 TIGR01108 oadA oxaloacetate de 94.3 0.85 1.8E-05 47.6 13.6 154 104-277 26-195 (582)
178 PRK08318 dihydropyrimidine deh 94.3 1.6 3.5E-05 43.2 15.0 132 127-282 70-261 (420)
179 PRK14042 pyruvate carboxylase 94.3 1.9 4.2E-05 45.2 16.0 117 81-214 66-203 (596)
180 PLN02274 inosine-5'-monophosph 94.3 0.94 2E-05 46.5 13.5 69 100-191 248-317 (505)
181 cd00950 DHDPS Dihydrodipicolin 94.2 0.66 1.4E-05 43.1 11.5 96 166-280 17-132 (284)
182 cd02940 DHPD_FMN Dihydropyrimi 94.2 3.1 6.7E-05 39.4 16.1 80 103-189 117-198 (299)
183 cd07944 DRE_TIM_HOA_like 4-hyd 94.2 3.2 6.9E-05 38.9 15.9 148 104-277 25-186 (266)
184 PRK05835 fructose-bisphosphate 94.2 5.9 0.00013 38.4 20.7 185 80-287 4-216 (307)
185 COG0434 SgcQ Predicted TIM-bar 94.2 1.1 2.5E-05 42.2 12.6 157 104-285 39-215 (263)
186 TIGR01037 pyrD_sub1_fam dihydr 94.1 4.5 9.8E-05 37.9 16.9 105 79-191 77-189 (300)
187 PRK02615 thiamine-phosphate py 94.0 2.7 5.7E-05 41.4 15.5 123 110-282 168-302 (347)
188 PF01791 DeoC: DeoC/LacD famil 94.0 0.75 1.6E-05 41.8 11.1 143 108-281 28-200 (236)
189 COG1794 RacX Aspartate racemas 94.0 0.12 2.5E-06 48.1 5.8 50 231-280 54-104 (230)
190 PRK10415 tRNA-dihydrouridine s 94.0 2 4.4E-05 41.3 14.5 108 104-214 82-200 (321)
191 PF00701 DHDPS: Dihydrodipicol 94.0 0.1 2.2E-06 48.7 5.5 78 104-194 88-166 (289)
192 PRK12330 oxaloacetate decarbox 94.0 2.8 6E-05 43.2 16.1 119 81-215 67-207 (499)
193 PRK10200 putative racemase; Pr 93.9 0.13 2.8E-06 47.1 6.0 50 232-281 55-105 (230)
194 cd00564 TMP_TenI Thiamine mono 93.9 3.4 7.4E-05 35.1 14.4 126 108-283 21-159 (196)
195 cd02803 OYE_like_FMN_family Ol 93.9 2.9 6.2E-05 39.5 15.2 101 76-193 128-250 (327)
196 PF05690 ThiG: Thiazole biosyn 93.9 0.45 9.7E-06 44.7 9.4 93 79-191 111-204 (247)
197 PRK08649 inosine 5-monophospha 93.9 0.62 1.4E-05 46.0 11.0 99 83-191 178-285 (368)
198 cd00953 KDG_aldolase KDG (2-ke 93.9 0.37 8E-06 45.2 9.0 101 160-281 10-128 (279)
199 PRK09485 mmuM homocysteine met 93.8 2.4 5.1E-05 40.5 14.5 159 110-283 57-249 (304)
200 cd00952 CHBPH_aldolase Trans-o 93.8 0.3 6.6E-06 46.6 8.4 76 104-192 95-172 (309)
201 PRK07084 fructose-bisphosphate 93.8 7.3 0.00016 38.1 20.2 188 78-287 9-229 (321)
202 cd02803 OYE_like_FMN_family Ol 93.7 0.85 1.8E-05 43.1 11.3 45 238-282 227-289 (327)
203 cd02812 PcrB_like PcrB_like pr 93.7 2.5 5.3E-05 39.1 13.9 151 101-284 14-184 (219)
204 cd00954 NAL N-Acetylneuraminic 93.7 0.62 1.3E-05 43.7 10.3 96 167-281 18-135 (288)
205 cd02911 arch_FMN Archeal FMN-b 93.7 5.6 0.00012 36.6 16.7 145 84-259 65-220 (233)
206 COG0329 DapA Dihydrodipicolina 93.7 0.19 4.2E-06 47.9 6.9 88 94-194 77-169 (299)
207 cd00381 IMPDH IMPDH: The catal 93.7 4 8.6E-05 39.4 15.9 121 91-258 34-162 (325)
208 PLN02417 dihydrodipicolinate s 93.7 0.66 1.4E-05 43.6 10.4 89 105-212 89-178 (280)
209 TIGR02151 IPP_isom_2 isopenten 93.7 2.4 5.2E-05 41.0 14.4 126 101-260 72-211 (333)
210 cd08210 RLP_RrRLP Ribulose bis 93.6 1.1 2.3E-05 44.3 12.1 128 141-284 114-253 (364)
211 PTZ00314 inosine-5'-monophosph 93.6 0.69 1.5E-05 47.3 11.0 101 81-191 270-373 (495)
212 PRK06512 thiamine-phosphate py 93.6 0.95 2E-05 41.5 10.9 123 110-282 37-172 (221)
213 TIGR01305 GMP_reduct_1 guanosi 93.5 0.88 1.9E-05 44.7 11.2 99 81-191 141-241 (343)
214 cd02931 ER_like_FMN Enoate red 93.5 1.7 3.7E-05 42.7 13.4 107 77-194 138-275 (382)
215 CHL00200 trpA tryptophan synth 93.5 6.9 0.00015 36.9 17.5 115 92-212 16-148 (263)
216 PRK01130 N-acetylmannosamine-6 93.5 0.84 1.8E-05 40.9 10.3 97 79-191 105-202 (221)
217 cd00405 PRAI Phosphoribosylant 93.4 3.9 8.5E-05 36.2 14.4 144 96-282 3-160 (203)
218 PF01116 F_bP_aldolase: Fructo 93.4 5.7 0.00012 38.0 16.3 180 84-287 9-217 (287)
219 cd04729 NanE N-acetylmannosami 93.4 0.69 1.5E-05 41.5 9.7 96 80-191 110-206 (219)
220 TIGR03249 KdgD 5-dehydro-4-deo 93.4 1.3 2.7E-05 41.9 11.8 95 167-281 23-137 (296)
221 TIGR00683 nanA N-acetylneurami 93.4 1.2 2.7E-05 42.0 11.7 95 167-280 18-134 (290)
222 PRK14041 oxaloacetate decarbox 93.4 2.6 5.5E-05 43.1 14.6 154 104-277 30-199 (467)
223 cd04736 MDH_FMN Mandelate dehy 93.3 0.86 1.9E-05 45.0 10.9 96 78-191 222-318 (361)
224 COG0646 MetH Methionine syntha 93.2 1.5 3.3E-05 42.5 12.0 179 77-269 30-239 (311)
225 PTZ00314 inosine-5'-monophosph 93.2 1.6 3.4E-05 44.7 12.9 70 100-191 241-310 (495)
226 cd04738 DHOD_2_like Dihydrooro 93.2 3.7 8E-05 39.5 14.8 104 81-192 118-237 (327)
227 cd04734 OYE_like_3_FMN Old yel 93.1 2 4.4E-05 41.6 13.0 106 77-193 129-251 (343)
228 PRK13587 1-(5-phosphoribosyl)- 93.1 3.3 7.1E-05 38.1 13.8 151 103-280 35-198 (234)
229 TIGR00035 asp_race aspartate r 93.1 0.23 5E-06 45.1 6.1 47 235-281 58-105 (229)
230 PRK05096 guanosine 5'-monophos 93.1 0.78 1.7E-05 45.1 10.0 107 110-260 120-243 (346)
231 PRK08649 inosine 5-monophospha 93.1 1.6 3.5E-05 43.1 12.4 73 101-191 143-215 (368)
232 cd02932 OYE_YqiM_FMN Old yello 93.1 5.3 0.00011 38.3 15.7 98 77-192 142-262 (336)
233 cd02932 OYE_YqiM_FMN Old yello 93.1 1.4 3E-05 42.3 11.7 98 172-281 156-297 (336)
234 COG3473 Maleate cis-trans isom 93.0 3 6.4E-05 38.8 13.1 165 75-279 40-209 (238)
235 TIGR01303 IMP_DH_rel_1 IMP deh 93.0 1.2 2.5E-05 45.5 11.6 103 79-192 252-358 (475)
236 PF00290 Trp_syntA: Tryptophan 93.0 5.7 0.00012 37.6 15.3 121 84-213 1-145 (259)
237 PRK03620 5-dehydro-4-deoxygluc 92.9 1.7 3.6E-05 41.3 11.9 95 167-281 25-139 (303)
238 PF01207 Dus: Dihydrouridine s 92.9 0.35 7.7E-06 46.2 7.4 106 156-281 56-190 (309)
239 PRK10558 alpha-dehydro-beta-de 92.9 4.8 0.0001 37.7 14.8 113 84-219 10-125 (256)
240 TIGR00222 panB 3-methyl-2-oxob 92.9 0.96 2.1E-05 42.9 10.1 120 77-219 56-205 (263)
241 PRK08318 dihydropyrimidine deh 92.9 2.6 5.6E-05 41.7 13.7 81 103-190 117-199 (420)
242 TIGR01361 DAHP_synth_Bsub phos 92.9 6.2 0.00013 37.0 15.5 145 79-261 76-231 (260)
243 TIGR02127 pyrF_sub2 orotidine 92.8 1.6 3.5E-05 41.1 11.4 119 156-282 89-220 (261)
244 cd07937 DRE_TIM_PC_TC_5S Pyruv 92.8 3.3 7.1E-05 38.9 13.5 93 107-214 99-198 (275)
245 COG2070 Dioxygenases related t 92.7 2.5 5.5E-05 41.2 13.0 128 127-279 40-189 (336)
246 PLN02417 dihydrodipicolinate s 92.7 0.66 1.4E-05 43.5 8.7 93 167-280 19-131 (280)
247 TIGR01304 IMP_DH_rel_2 IMP deh 92.7 1.3 2.8E-05 43.8 11.1 90 91-191 188-284 (369)
248 PLN02424 ketopantoate hydroxym 92.7 1.5 3.3E-05 42.9 11.3 120 76-216 75-224 (332)
249 cd02811 IDI-2_FMN Isopentenyl- 92.6 9.1 0.0002 36.9 16.7 147 101-281 71-262 (326)
250 PRK09197 fructose-bisphosphate 92.6 7.6 0.00016 38.4 16.1 194 84-287 13-261 (350)
251 PLN02858 fructose-bisphosphate 92.6 15 0.00032 42.4 20.6 185 77-286 1098-1312(1378)
252 cd00958 DhnA Class I fructose- 92.5 4.3 9.3E-05 36.6 13.5 124 105-258 82-213 (235)
253 cd02930 DCR_FMN 2,4-dienoyl-Co 92.5 1.4 3.1E-05 42.6 11.1 44 238-281 223-283 (353)
254 PRK13523 NADPH dehydrogenase N 92.5 2.1 4.5E-05 41.6 12.2 98 173-282 145-283 (337)
255 TIGR00262 trpA tryptophan synt 92.5 7.5 0.00016 36.3 15.4 110 93-212 12-144 (256)
256 TIGR03217 4OH_2_O_val_ald 4-hy 92.4 5.1 0.00011 38.9 14.7 99 100-214 88-194 (333)
257 cd04741 DHOD_1A_like Dihydroor 92.4 7.5 0.00016 36.8 15.6 133 124-282 63-251 (294)
258 PRK07226 fructose-bisphosphate 92.4 4.2 9.2E-05 37.9 13.6 125 105-258 99-230 (267)
259 PF00478 IMPDH: IMP dehydrogen 92.3 1.5 3.2E-05 43.3 10.8 102 80-192 139-241 (352)
260 PF01487 DHquinase_I: Type I 3 92.3 5.3 0.00011 35.9 13.7 153 108-285 19-185 (224)
261 cd04733 OYE_like_2_FMN Old yel 92.2 1.7 3.8E-05 41.7 11.2 99 172-282 151-300 (338)
262 PRK12331 oxaloacetate decarbox 92.1 4.1 9E-05 41.3 14.1 95 106-215 103-204 (448)
263 PF02581 TMP-TENI: Thiamine mo 92.1 1.7 3.8E-05 37.8 10.1 123 110-282 23-157 (180)
264 cd04737 LOX_like_FMN L-Lactate 92.1 1.4 2.9E-05 43.4 10.4 96 78-191 207-305 (351)
265 PF00478 IMPDH: IMP dehydrogen 92.1 2 4.4E-05 42.3 11.5 120 96-260 102-241 (352)
266 cd07944 DRE_TIM_HOA_like 4-hyd 92.0 7 0.00015 36.6 14.7 118 81-214 61-189 (266)
267 TIGR00343 pyridoxal 5'-phospha 92.0 2 4.3E-05 41.3 11.1 84 167-278 18-118 (287)
268 PF02574 S-methyl_trans: Homoc 92.0 2.6 5.7E-05 39.7 12.0 161 110-281 52-247 (305)
269 cd00959 DeoC 2-deoxyribose-5-p 92.0 5.6 0.00012 35.5 13.5 78 105-193 75-153 (203)
270 PRK10128 2-keto-3-deoxy-L-rham 91.8 11 0.00023 35.7 15.8 112 83-217 8-122 (267)
271 cd00951 KDGDH 5-dehydro-4-deox 91.8 1.5 3.3E-05 41.2 10.1 75 105-194 87-162 (289)
272 PRK05692 hydroxymethylglutaryl 91.6 6.7 0.00015 37.2 14.3 119 91-214 72-205 (287)
273 PLN02617 imidazole glycerol ph 91.6 5.7 0.00012 41.3 14.7 164 104-281 272-489 (538)
274 PRK06806 fructose-bisphosphate 91.6 8.8 0.00019 36.5 15.0 114 91-222 74-216 (281)
275 COG0800 Eda 2-keto-3-deoxy-6-p 91.6 1.8 3.9E-05 39.9 9.9 89 167-278 22-110 (211)
276 cd00453 FTBP_aldolase_II Fruct 91.6 15 0.00033 36.2 20.5 191 82-286 3-253 (340)
277 PRK05096 guanosine 5'-monophos 91.6 1.6 3.4E-05 43.0 10.0 102 80-192 141-243 (346)
278 TIGR00284 dihydropteroate synt 91.5 14 0.0003 38.2 17.3 137 109-285 175-321 (499)
279 TIGR01302 IMP_dehydrog inosine 91.5 1.9 4.2E-05 43.3 11.0 69 100-191 224-293 (450)
280 PRK05286 dihydroorotate dehydr 91.5 5.9 0.00013 38.4 14.0 83 103-193 158-247 (344)
281 PRK15063 isocitrate lyase; Pro 91.5 7.3 0.00016 39.5 14.8 144 104-261 166-348 (428)
282 PF00682 HMGL-like: HMGL-like 91.4 6 0.00013 35.6 13.1 143 104-280 19-186 (237)
283 PRK08195 4-hyroxy-2-oxovalerat 91.2 12 0.00027 36.3 15.9 108 91-214 77-195 (337)
284 cd02933 OYE_like_FMN Old yello 91.1 3.7 8E-05 39.8 12.2 45 238-282 240-293 (338)
285 CHL00162 thiG thiamin biosynth 91.1 2.2 4.8E-05 40.6 10.1 94 80-193 126-220 (267)
286 PRK00230 orotidine 5'-phosphat 91.1 12 0.00026 34.2 16.0 138 107-274 75-228 (230)
287 PRK11840 bifunctional sulfur c 91.1 4.5 9.7E-05 39.6 12.5 95 163-283 145-257 (326)
288 PF04551 GcpE: GcpE protein; 91.0 1.1 2.5E-05 44.2 8.5 149 106-290 38-219 (359)
289 TIGR01740 pyrF orotidine 5'-ph 91.0 10 0.00022 34.0 14.2 153 107-289 16-176 (213)
290 PLN02591 tryptophan synthase 91.0 4.5 9.7E-05 37.9 12.1 74 133-212 59-135 (250)
291 PRK03620 5-dehydro-4-deoxygluc 91.0 2 4.4E-05 40.7 10.0 76 104-194 93-169 (303)
292 cd08205 RuBisCO_IV_RLP Ribulos 90.9 14 0.0003 36.5 16.1 125 78-216 115-255 (367)
293 PRK13397 3-deoxy-7-phosphohept 90.9 14 0.00031 34.8 16.5 145 80-262 67-222 (250)
294 cd02933 OYE_like_FMN Old yello 90.9 12 0.00025 36.4 15.3 104 77-193 140-263 (338)
295 TIGR00126 deoC deoxyribose-pho 90.8 5.5 0.00012 36.5 12.3 77 106-193 77-154 (211)
296 TIGR02082 metH 5-methyltetrahy 90.7 4.4 9.6E-05 45.8 13.8 159 110-280 61-259 (1178)
297 TIGR00735 hisF imidazoleglycer 90.7 4.2 9.2E-05 37.5 11.7 90 103-211 159-253 (254)
298 PRK12858 tagatose 1,6-diphosph 90.7 3.4 7.4E-05 40.4 11.5 104 176-284 112-251 (340)
299 COG0284 PyrF Orotidine-5'-phos 90.6 2.8 6E-05 39.2 10.3 127 155-289 64-194 (240)
300 cd04734 OYE_like_3_FMN Old yel 90.5 2.6 5.6E-05 40.9 10.5 43 239-281 228-292 (343)
301 TIGR03249 KdgD 5-dehydro-4-deo 90.5 4.1 8.9E-05 38.4 11.6 76 104-194 91-167 (296)
302 COG2022 ThiG Uncharacterized e 90.5 1.8 4E-05 40.8 8.9 93 80-192 119-212 (262)
303 PRK12595 bifunctional 3-deoxy- 90.4 19 0.00042 35.5 16.7 142 83-262 173-325 (360)
304 TIGR01304 IMP_DH_rel_2 IMP deh 90.4 2.1 4.6E-05 42.4 9.9 129 98-279 54-193 (369)
305 PRK02083 imidazole glycerol ph 90.3 7.5 0.00016 35.6 12.9 89 103-211 157-251 (253)
306 TIGR00693 thiE thiamine-phosph 90.3 7 0.00015 34.0 12.2 123 110-282 24-160 (196)
307 PRK00865 glutamate racemase; P 90.3 0.92 2E-05 42.2 7.0 90 152-281 5-98 (261)
308 cd04733 OYE_like_2_FMN Old yel 90.2 6.5 0.00014 37.8 12.9 104 77-193 137-258 (338)
309 cd03332 LMO_FMN L-Lactate 2-mo 90.2 3.7 8E-05 40.9 11.4 99 77-191 238-337 (383)
310 cd04735 OYE_like_4_FMN Old yel 90.2 4 8.7E-05 39.6 11.5 104 77-193 132-257 (353)
311 PRK14041 oxaloacetate decarbox 90.1 8.6 0.00019 39.3 14.2 94 106-215 102-203 (467)
312 PRK12581 oxaloacetate decarbox 90.1 15 0.00032 37.7 15.8 94 105-215 111-213 (468)
313 cd04724 Tryptophan_synthase_al 90.1 10 0.00023 34.8 13.6 72 135-212 59-133 (242)
314 PRK15452 putative protease; Pr 90.0 24 0.00051 35.8 17.7 158 93-282 4-168 (443)
315 cd02930 DCR_FMN 2,4-dienoyl-Co 90.0 3.9 8.5E-05 39.6 11.3 103 77-192 125-245 (353)
316 PRK13523 NADPH dehydrogenase N 90.0 7.8 0.00017 37.6 13.3 124 77-213 130-280 (337)
317 PRK11197 lldD L-lactate dehydr 90.0 2.7 5.8E-05 41.9 10.2 98 78-191 231-329 (381)
318 TIGR01362 KDO8P_synth 3-deoxy- 89.9 18 0.00039 34.4 16.6 155 79-263 60-225 (258)
319 TIGR01520 FruBisAldo_II_A fruc 89.9 22 0.00048 35.3 17.5 198 87-287 22-269 (357)
320 PRK09282 pyruvate carboxylase 89.9 9.7 0.00021 40.0 14.7 95 104-214 101-203 (592)
321 PLN02535 glycolate oxidase 89.9 4.3 9.3E-05 40.2 11.5 100 77-192 208-308 (364)
322 cd04726 KGPDC_HPS 3-Keto-L-gul 89.8 13 0.00027 32.4 14.0 133 80-259 43-186 (202)
323 PRK05567 inosine 5'-monophosph 89.8 5.6 0.00012 40.4 12.6 69 100-191 228-297 (486)
324 PF01207 Dus: Dihydrouridine s 89.7 1.9 4.1E-05 41.2 8.6 121 92-215 55-190 (309)
325 TIGR02660 nifV_homocitr homoci 89.6 21 0.00045 34.9 16.0 115 92-215 65-192 (365)
326 cd04727 pdxS PdxS is a subunit 89.5 2.9 6.2E-05 40.2 9.6 88 92-192 112-226 (283)
327 PRK13396 3-deoxy-7-phosphohept 89.5 23 0.00051 35.0 16.5 147 78-262 151-309 (352)
328 PRK09283 delta-aminolevulinic 89.4 9.6 0.00021 37.3 13.2 137 140-280 99-271 (323)
329 cd07948 DRE_TIM_HCS Saccharomy 89.2 11 0.00025 35.3 13.4 135 105-277 28-187 (262)
330 PRK06843 inosine 5-monophospha 89.2 4 8.6E-05 41.0 10.8 65 103-190 156-221 (404)
331 cd02811 IDI-2_FMN Isopentenyl- 89.2 5.3 0.00012 38.5 11.4 97 82-191 168-284 (326)
332 PRK10605 N-ethylmaleimide redu 89.1 9.5 0.00021 37.4 13.2 161 77-273 147-338 (362)
333 cd00502 DHQase_I Type I 3-dehy 89.1 17 0.00036 32.8 15.1 149 112-285 24-185 (225)
334 cd00953 KDG_aldolase KDG (2-ke 89.0 3.2 6.9E-05 38.9 9.6 90 91-194 66-161 (279)
335 PF07302 AroM: AroM protein; 89.0 0.91 2E-05 42.0 5.7 172 80-278 15-206 (221)
336 TIGR01740 pyrF orotidine 5'-ph 88.9 10 0.00023 34.0 12.5 144 84-259 42-196 (213)
337 TIGR03849 arch_ComA phosphosul 88.9 3 6.4E-05 39.1 9.1 88 178-275 78-185 (237)
338 PRK00125 pyrF orotidine 5'-pho 88.8 9.6 0.00021 36.3 12.7 131 137-282 75-222 (278)
339 PRK05718 keto-hydroxyglutarate 88.8 4 8.6E-05 37.3 9.7 88 167-278 24-112 (212)
340 COG1954 GlpP Glycerol-3-phosph 88.8 12 0.00027 33.7 12.4 108 141-278 38-148 (181)
341 cd04739 DHOD_like Dihydroorota 88.8 23 0.00051 34.0 16.7 103 81-193 88-197 (325)
342 PF03060 NMO: Nitronate monoox 88.7 4.4 9.5E-05 39.0 10.5 90 83-190 128-218 (330)
343 PLN02495 oxidoreductase, actin 88.7 7.1 0.00015 38.9 12.1 110 125-258 82-213 (385)
344 PRK07807 inosine 5-monophospha 88.7 6.3 0.00014 40.3 12.1 67 102-191 229-296 (479)
345 TIGR01108 oadA oxaloacetate de 88.6 11 0.00025 39.4 14.2 95 105-215 97-199 (582)
346 TIGR00067 glut_race glutamate 88.6 1.5 3.4E-05 40.7 7.1 51 230-280 36-91 (251)
347 TIGR03239 GarL 2-dehydro-3-deo 88.4 22 0.00047 33.2 14.7 111 84-217 3-116 (249)
348 TIGR02708 L_lactate_ox L-lacta 88.3 5.2 0.00011 39.7 10.9 99 77-191 213-312 (367)
349 cd07941 DRE_TIM_LeuA3 Desulfob 88.2 14 0.0003 34.6 13.2 143 104-276 25-197 (273)
350 COG0159 TrpA Tryptophan syntha 88.1 25 0.00054 33.6 18.5 124 83-212 7-151 (265)
351 PRK05437 isopentenyl pyrophosp 88.0 6.7 0.00014 38.4 11.4 97 82-191 176-290 (352)
352 TIGR02129 hisA_euk phosphoribo 88.0 13 0.00028 35.1 12.8 147 103-281 42-208 (253)
353 PRK00915 2-isopropylmalate syn 88.0 15 0.00033 37.7 14.4 137 104-274 31-192 (513)
354 PRK11858 aksA trans-homoaconit 87.9 22 0.00048 35.0 15.0 113 94-215 70-195 (378)
355 PLN02746 hydroxymethylglutaryl 87.7 22 0.00048 35.0 14.7 151 102-280 71-246 (347)
356 COG0821 gcpE 1-hydroxy-2-methy 87.6 1.4 3E-05 43.4 6.2 44 236-279 33-79 (361)
357 PRK12999 pyruvate carboxylase; 87.5 17 0.00037 41.1 15.5 162 103-277 559-737 (1146)
358 TIGR01306 GMP_reduct_2 guanosi 87.5 7.7 0.00017 37.8 11.3 64 105-191 99-165 (321)
359 cd04823 ALAD_PBGS_aspartate_ri 87.3 15 0.00033 35.9 13.1 137 140-280 96-268 (320)
360 TIGR02311 HpaI 2,4-dihydroxyhe 87.3 6.3 0.00014 36.6 10.3 89 83-192 2-92 (249)
361 PRK09250 fructose-bisphosphate 87.2 1.9 4.2E-05 42.4 7.1 83 103-190 221-317 (348)
362 TIGR01521 FruBisAldo_II_B fruc 87.2 33 0.00071 34.0 19.2 186 84-287 8-236 (347)
363 PRK05458 guanosine 5'-monophos 86.9 32 0.0007 33.6 15.4 77 92-191 85-168 (326)
364 PRK15108 biotin synthase; Prov 86.9 11 0.00024 36.7 12.1 113 105-249 85-213 (345)
365 cd02922 FCB2_FMN Flavocytochro 86.9 11 0.00023 37.0 12.1 98 79-191 200-300 (344)
366 PRK08185 hypothetical protein; 86.7 28 0.00061 33.3 14.5 109 91-216 68-206 (283)
367 TIGR02090 LEU1_arch isopropylm 86.6 16 0.00036 35.7 13.2 135 104-276 27-186 (363)
368 PRK07107 inosine 5-monophospha 86.6 7.6 0.00016 40.0 11.2 69 102-191 244-312 (502)
369 cd00946 FBP_aldolase_IIA Class 86.5 35 0.00077 33.7 17.0 134 84-220 8-166 (345)
370 cd00384 ALAD_PBGS Porphobilino 86.5 17 0.00038 35.4 12.9 137 140-280 91-263 (314)
371 PRK10605 N-ethylmaleimide redu 86.4 10 0.00022 37.2 11.7 42 241-282 251-300 (362)
372 PRK14040 oxaloacetate decarbox 86.3 25 0.00055 37.0 15.1 117 80-215 66-205 (593)
373 TIGR01859 fruc_bis_ald_ fructo 86.2 18 0.00038 34.4 12.8 111 92-220 75-214 (282)
374 TIGR00259 thylakoid_BtpA membr 86.2 2.2 4.8E-05 40.3 6.6 48 232-280 20-84 (257)
375 TIGR01182 eda Entner-Doudoroff 86.2 11 0.00024 34.3 11.0 87 167-278 17-105 (204)
376 cd04747 OYE_like_5_FMN Old yel 86.1 11 0.00024 37.1 11.8 44 239-282 235-288 (361)
377 TIGR02151 IPP_isom_2 isopenten 86.1 5.9 0.00013 38.3 9.7 97 82-191 169-283 (333)
378 PRK08227 autoinducer 2 aldolas 86.0 14 0.0003 35.1 11.8 119 108-258 103-225 (264)
379 PRK07475 hypothetical protein; 85.9 1.5 3.3E-05 40.5 5.4 47 233-279 59-106 (245)
380 PF00490 ALAD: Delta-aminolevu 85.8 7.7 0.00017 38.0 10.2 136 140-280 99-273 (324)
381 PRK07107 inosine 5-monophospha 85.6 4.2 9E-05 41.8 8.8 86 96-191 289-381 (502)
382 PRK13399 fructose-1,6-bisphosp 85.4 40 0.00087 33.3 20.5 190 79-287 4-238 (347)
383 COG5564 Predicted TIM-barrel e 85.4 2.4 5.2E-05 39.8 6.3 62 79-140 8-78 (276)
384 PRK06015 keto-hydroxyglutarate 85.3 12 0.00025 34.2 10.7 89 167-278 13-101 (201)
385 PRK00507 deoxyribose-phosphate 85.3 30 0.00066 31.8 15.7 141 84-257 49-206 (221)
386 TIGR01496 DHPS dihydropteroate 85.1 16 0.00034 34.2 11.7 47 167-214 20-81 (257)
387 cd00452 KDPG_aldolase KDPG and 84.9 26 0.00057 30.7 14.6 126 80-260 45-172 (190)
388 PRK08255 salicylyl-CoA 5-hydro 84.8 9.8 0.00021 40.8 11.5 44 239-282 638-695 (765)
389 PRK06552 keto-hydroxyglutarate 84.8 13 0.00028 34.0 10.8 88 168-278 23-113 (213)
390 COG0113 HemB Delta-aminolevuli 84.7 12 0.00025 36.7 10.7 134 128-281 51-198 (330)
391 PRK11858 aksA trans-homoaconit 84.6 20 0.00044 35.2 12.9 135 104-276 31-190 (378)
392 TIGR00977 LeuA_rel 2-isopropyl 84.6 53 0.0011 34.1 16.3 150 104-282 28-205 (526)
393 TIGR02660 nifV_homocitr homoci 84.6 12 0.00026 36.6 11.2 135 104-276 28-187 (365)
394 PRK08673 3-deoxy-7-phosphohept 84.5 43 0.00093 32.9 15.6 144 81-262 146-300 (335)
395 PRK13397 3-deoxy-7-phosphohept 84.5 37 0.0008 32.1 16.3 152 103-289 33-197 (250)
396 PF02679 ComA: (2R)-phospho-3- 84.4 0.94 2E-05 42.5 3.3 87 177-274 90-196 (244)
397 COG0042 tRNA-dihydrouridine sy 84.4 4.5 9.7E-05 39.2 8.0 92 84-193 127-230 (323)
398 TIGR03128 RuMP_HxlA 3-hexulose 84.4 28 0.0006 30.5 14.4 132 110-281 22-165 (206)
399 cd04730 NPD_like 2-Nitropropan 84.3 14 0.00029 33.0 10.6 93 83-192 94-186 (236)
400 cd07948 DRE_TIM_HCS Saccharomy 84.2 37 0.0008 31.8 14.1 125 80-214 53-190 (262)
401 TIGR00677 fadh2_euk methylenet 84.2 39 0.00084 32.1 16.3 192 79-274 46-276 (281)
402 cd04722 TIM_phosphate_binding 84.0 23 0.0005 29.3 13.1 68 105-193 77-145 (200)
403 PF00490 ALAD: Delta-aminolevu 83.9 5.8 0.00013 38.8 8.5 133 127-281 46-195 (324)
404 PRK07709 fructose-bisphosphate 83.9 18 0.0004 34.6 11.8 106 93-215 79-210 (285)
405 TIGR01163 rpe ribulose-phospha 83.8 29 0.00062 30.2 13.1 92 104-212 16-108 (210)
406 PRK00043 thiE thiamine-phospha 83.8 29 0.00062 30.3 15.5 128 105-282 27-168 (212)
407 PRK09490 metH B12-dependent me 83.7 17 0.00037 41.5 13.1 159 110-280 76-275 (1229)
408 PRK11572 copper homeostasis pr 83.5 41 0.00088 31.8 18.8 110 94-219 3-128 (248)
409 PTZ00413 lipoate synthase; Pro 83.5 33 0.00071 34.6 13.7 162 80-258 110-329 (398)
410 cd02931 ER_like_FMN Enoate red 83.3 24 0.00053 34.7 12.8 43 239-281 252-312 (382)
411 PF01177 Asp_Glu_race: Asp/Glu 83.2 1.4 3.1E-05 38.5 3.8 42 240-281 53-96 (216)
412 PRK05692 hydroxymethylglutaryl 83.2 43 0.00093 31.8 15.0 86 182-276 90-201 (287)
413 TIGR00262 trpA tryptophan synt 83.2 11 0.00024 35.2 9.9 21 198-219 75-98 (256)
414 PRK08999 hypothetical protein; 83.2 7.9 0.00017 36.3 9.0 104 137-282 173-288 (312)
415 cd04824 eu_ALAD_PBGS_cysteine_ 83.2 29 0.00062 34.0 12.8 137 140-280 94-269 (320)
416 PRK04180 pyridoxal biosynthesi 83.1 6.9 0.00015 37.8 8.5 88 92-192 121-235 (293)
417 cd08207 RLP_NonPhot Ribulose b 82.9 9.7 0.00021 38.3 9.9 123 141-282 131-268 (406)
418 PRK05198 2-dehydro-3-deoxyphos 82.8 45 0.00098 31.9 16.9 154 80-263 69-233 (264)
419 TIGR01919 hisA-trpF 1-(5-phosp 82.8 40 0.00087 31.2 14.6 149 104-280 36-199 (243)
420 cd00564 TMP_TenI Thiamine mono 82.7 20 0.00043 30.3 10.6 96 79-192 83-179 (196)
421 CHL00200 trpA tryptophan synth 82.7 40 0.00088 31.8 13.5 56 91-161 91-153 (263)
422 PRK00366 ispG 4-hydroxy-3-meth 82.7 3.4 7.4E-05 40.9 6.4 44 236-279 39-85 (360)
423 PRK08508 biotin synthase; Prov 82.7 17 0.00038 34.0 11.1 117 106-255 50-182 (279)
424 PF03437 BtpA: BtpA family; I 82.6 3.8 8.2E-05 38.7 6.5 41 237-277 27-83 (254)
425 PRK07998 gatY putative fructos 82.5 24 0.00051 33.9 11.9 108 91-215 74-206 (283)
426 PF01136 Peptidase_U32: Peptid 82.4 20 0.00044 32.0 11.0 88 173-285 4-95 (233)
427 PRK06552 keto-hydroxyglutarate 82.4 39 0.00085 30.8 18.0 146 86-282 8-163 (213)
428 cd03315 MLE_like Muconate lact 82.3 20 0.00043 32.9 11.1 94 168-279 85-185 (265)
429 TIGR01235 pyruv_carbox pyruvat 82.3 22 0.00047 40.4 13.2 107 164-277 618-735 (1143)
430 PLN02489 homocysteine S-methyl 82.3 38 0.00082 33.0 13.5 161 79-274 160-332 (335)
431 PRK14114 1-(5-phosphoribosyl)- 82.2 42 0.00092 31.1 15.7 153 101-281 31-195 (241)
432 cd00956 Transaldolase_FSA Tran 82.2 15 0.00033 33.3 10.1 93 79-191 89-185 (211)
433 PRK08255 salicylyl-CoA 5-hydro 82.2 34 0.00073 36.8 14.2 100 77-193 539-660 (765)
434 PRK10481 hypothetical protein; 82.1 2.9 6.2E-05 38.8 5.4 171 81-279 19-211 (224)
435 TIGR03326 rubisco_III ribulose 82.1 25 0.00053 35.5 12.4 123 141-282 132-272 (412)
436 PRK13384 delta-aminolevulinic 82.0 18 0.00038 35.5 10.9 137 140-280 101-272 (322)
437 TIGR03572 WbuZ glycosyl amidat 82.0 20 0.00042 32.3 10.7 69 103-190 157-226 (232)
438 TIGR03332 salvage_mtnW 2,3-dik 81.8 12 0.00026 37.7 10.0 124 141-283 127-267 (407)
439 TIGR01093 aroD 3-dehydroquinat 81.8 40 0.00087 30.5 15.5 154 110-285 22-190 (228)
440 PF01791 DeoC: DeoC/LacD famil 81.5 17 0.00038 32.9 10.3 133 102-254 79-223 (236)
441 cd08209 RLP_DK-MTP-1-P-enolase 81.5 23 0.00049 35.5 11.8 124 141-283 112-252 (391)
442 cd03316 MR_like Mandelate race 81.3 21 0.00046 34.1 11.3 94 168-279 139-245 (357)
443 cd04735 OYE_like_4_FMN Old yel 81.3 25 0.00055 34.1 11.9 44 239-282 235-292 (353)
444 PRK13384 delta-aminolevulinic 81.3 16 0.00035 35.8 10.3 136 125-281 48-195 (322)
445 COG2185 Sbm Methylmalonyl-CoA 81.2 36 0.00077 29.7 11.5 29 245-273 108-137 (143)
446 cd04725 OMP_decarboxylase_like 81.1 28 0.00061 31.4 11.5 116 155-282 51-173 (216)
447 PLN02979 glycolate oxidase 81.0 21 0.00046 35.5 11.3 99 77-191 208-307 (366)
448 cd08148 RuBisCO_large Ribulose 80.9 12 0.00027 37.1 9.7 123 143-284 117-256 (366)
449 cd04747 OYE_like_5_FMN Old yel 80.8 26 0.00057 34.5 11.9 130 77-217 132-289 (361)
450 PRK13753 dihydropteroate synth 80.5 28 0.0006 33.4 11.6 90 167-282 22-127 (279)
451 PF02548 Pantoate_transf: Keto 80.5 3.8 8.3E-05 38.9 5.8 47 237-284 92-142 (261)
452 TIGR03586 PseI pseudaminic aci 80.4 14 0.0003 36.1 9.8 112 135-277 74-196 (327)
453 PRK09283 delta-aminolevulinic 80.3 23 0.00049 34.8 11.0 134 126-280 47-192 (323)
454 COG0106 HisA Phosphoribosylfor 80.3 53 0.0012 31.0 14.5 154 104-284 36-201 (241)
455 PRK09490 metH B12-dependent me 80.1 21 0.00047 40.7 12.3 121 136-259 253-404 (1229)
456 PRK07360 FO synthase subunit 2 80.1 20 0.00043 35.1 10.8 129 104-259 99-254 (371)
457 cd02808 GltS_FMN Glutamate syn 80.1 22 0.00047 35.3 11.2 91 92-192 215-315 (392)
458 PLN02493 probable peroxisomal 79.8 24 0.00052 35.1 11.3 99 77-191 209-308 (367)
459 COG1794 RacX Aspartate racemas 79.8 14 0.00031 34.5 9.1 121 141-262 23-198 (230)
460 cd07945 DRE_TIM_CMS Leptospira 79.7 41 0.00089 31.8 12.5 102 104-214 79-197 (280)
461 PRK11840 bifunctional sulfur c 79.7 19 0.00042 35.3 10.4 94 79-193 185-280 (326)
462 cd07943 DRE_TIM_HOA 4-hydroxy- 79.6 51 0.0011 30.4 15.0 109 90-214 73-191 (263)
463 PRK12999 pyruvate carboxylase; 79.6 58 0.0013 37.0 15.4 119 80-214 596-740 (1146)
464 cd04824 eu_ALAD_PBGS_cysteine_ 79.5 12 0.00026 36.6 8.8 135 126-280 39-189 (320)
465 PF09370 TIM-br_sig_trns: TIM- 79.3 35 0.00075 32.7 11.7 100 79-189 138-244 (268)
466 PLN02446 (5-phosphoribosyl)-5- 79.3 59 0.0013 30.9 13.3 149 103-281 47-214 (262)
467 PRK02412 aroD 3-dehydroquinate 79.3 47 0.001 30.8 12.5 153 108-285 37-208 (253)
468 PRK06852 aldolase; Validated 79.1 13 0.00028 36.0 9.0 68 102-190 191-264 (304)
469 TIGR01501 MthylAspMutase methy 79.1 40 0.00086 28.8 11.4 101 154-275 29-134 (134)
470 PRK09427 bifunctional indole-3 79.0 80 0.0017 32.3 15.9 138 95-278 162-310 (454)
471 PRK08645 bifunctional homocyst 79.0 90 0.0019 32.8 16.8 158 78-274 117-286 (612)
472 cd04726 KGPDC_HPS 3-Keto-L-gul 78.8 36 0.00078 29.5 11.1 86 87-191 99-186 (202)
473 COG0502 BioB Biotin synthase a 78.8 21 0.00046 35.1 10.5 119 104-256 92-226 (335)
474 PRK07695 transcriptional regul 78.8 44 0.00095 29.4 11.7 95 79-192 84-178 (201)
475 cd04732 HisA HisA. Phosphorib 78.7 48 0.001 29.5 14.6 143 80-258 61-218 (234)
476 cd00384 ALAD_PBGS Porphobilino 78.5 31 0.00067 33.8 11.3 133 127-280 40-184 (314)
477 cd03174 DRE_TIM_metallolyase D 78.4 51 0.0011 29.7 16.0 110 78-193 51-168 (265)
478 PRK08227 autoinducer 2 aldolas 78.3 13 0.00027 35.4 8.5 88 80-191 125-226 (264)
479 cd04823 ALAD_PBGS_aspartate_ri 78.3 33 0.00072 33.6 11.4 134 127-281 43-190 (320)
480 COG0167 PyrD Dihydroorotate de 78.3 41 0.00089 32.7 12.1 45 238-282 172-249 (310)
481 COG0119 LeuA Isopropylmalate/h 78.2 63 0.0014 32.5 13.8 136 104-274 29-189 (409)
482 PRK07455 keto-hydroxyglutarate 78.2 35 0.00076 30.3 10.9 94 167-284 21-114 (187)
483 PRK12737 gatY tagatose-bisphos 78.2 48 0.001 31.7 12.5 100 99-215 84-209 (284)
484 TIGR01768 GGGP-family geranylg 78.1 58 0.0013 30.2 13.5 146 104-283 19-187 (223)
485 cd08206 RuBisCO_large_I_II_III 78.1 24 0.00052 35.7 10.8 126 141-284 120-263 (414)
486 TIGR02082 metH 5-methyltetrahy 77.6 30 0.00066 39.4 12.5 121 136-259 237-388 (1178)
487 cd07939 DRE_TIM_NifV Streptomy 77.6 59 0.0013 30.0 15.8 114 91-214 61-188 (259)
488 TIGR03699 mena_SCO4550 menaqui 77.5 48 0.001 31.7 12.4 70 178-259 147-234 (340)
489 COG4126 Hydantoin racemase [Am 77.5 2.9 6.2E-05 39.0 3.8 44 238-281 55-98 (230)
490 TIGR03569 NeuB_NnaB N-acetylne 77.5 18 0.00038 35.4 9.5 113 135-278 73-198 (329)
491 PRK13587 1-(5-phosphoribosyl)- 77.5 33 0.00071 31.6 10.8 88 167-280 31-130 (234)
492 TIGR00612 ispG_gcpE 1-hydroxy- 77.3 6.4 0.00014 38.8 6.3 44 236-279 31-77 (346)
493 PRK04208 rbcL ribulose bisopho 77.3 21 0.00045 36.7 10.2 124 142-283 149-290 (468)
494 PF03808 Glyco_tran_WecB: Glyc 77.3 44 0.00095 29.1 11.1 47 234-284 86-135 (172)
495 cd03319 L-Ala-DL-Glu_epimerase 77.3 33 0.00072 32.3 11.1 95 167-279 133-233 (316)
496 PLN02389 biotin synthase 77.2 40 0.00087 33.4 12.0 116 105-248 125-254 (379)
497 PRK05742 nicotinate-nucleotide 77.1 6.1 0.00013 37.6 6.1 41 242-282 199-241 (277)
498 PRK13813 orotidine 5'-phosphat 76.9 53 0.0012 29.1 17.9 132 106-273 74-212 (215)
499 TIGR01182 eda Entner-Doudoroff 76.9 59 0.0013 29.7 13.1 127 80-259 49-176 (204)
500 PF00977 His_biosynth: Histidi 76.9 4.2 9E-05 37.1 4.8 152 104-281 34-198 (229)
No 1
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=100.00 E-value=7.3e-81 Score=591.26 Aligned_cols=236 Identities=86% Similarity=1.337 Sum_probs=226.2
Q ss_pred ccCCCCCCCCCCCCCCCCCCcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCH
Q 022677 58 MSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137 (293)
Q Consensus 58 ~s~~~~~~~~~~~~~~~~~~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl 137 (293)
+|+.|+.++|+.+.++.+.+|+|+.+|+++|++|+||+|+|||||+||+++|++|+|+||||||++|++|||+||.+||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~k~ti~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtl 80 (332)
T PLN02424 1 MSNLPEDTVYGGPKPQNPAQRVTLRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITL 80 (332)
T ss_pred CCCCCcccccCCCCcccCCCCcCHHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCH
Confidence 57788889999887766667899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccc
Q 022677 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGL 217 (293)
Q Consensus 138 ~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGL 217 (293)
|||++|+++|+|++++||+++|||||||+.|++++++||.|+|+++||++||||||.....++|++|+++||||||||||
T Consensus 81 d~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiGL 160 (332)
T PLN02424 81 DEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGL 160 (332)
T ss_pred HHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999323468899999999999999999
Q ss_pred cceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEEEeCCCCCCCceeeeC
Q 022677 218 TPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVSFF 293 (293)
Q Consensus 218 tPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtIGIGaG~~~dGQvLV~ 293 (293)
|||+++++||||+|||+++++.++++||++||+||||+|||||+|++++++||++++|||||||||++|||||||+
T Consensus 161 tPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~la~~It~~l~IPtIGIGAG~~cDGQVLV~ 236 (332)
T PLN02424 161 TPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVPAPVAAAITSALQIPTIGIGAGPFCSGQVLVY 236 (332)
T ss_pred cceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHHHHHHHHHhCCCCEEeecCCCCCCceeEeH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=100.00 E-value=8.2e-81 Score=575.85 Aligned_cols=216 Identities=56% Similarity=0.907 Sum_probs=186.0
Q ss_pred CcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeE
Q 022677 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~v 156 (293)
||+|+.+|++++++|+||+|+|||||++|+++|++|+|+||||||++|+.|||+||.++|+|||++|+++|+|+++++|+
T Consensus 1 kk~t~~~l~~~k~~g~ki~~lTaYD~~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~v 80 (261)
T PF02548_consen 1 KKVTVSDLRKMKQKGEKIVMLTAYDYPSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFV 80 (261)
T ss_dssp ----HHHHHHHHHHT--EEEEE--SHHHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEE
T ss_pred CCccHHHHHHHHhCCCcEEEEecccHHHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHH
Q 022677 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVT 236 (293)
Q Consensus 157 vaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~ 236 (293)
++|||||||+.|++++++||.|++||+|||+||||||.+ ..++|++|+++|||||||+|||||+.+++||||+||||++
T Consensus 81 v~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~~-~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~ 159 (261)
T PF02548_consen 81 VADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGAE-IAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGKTAE 159 (261)
T ss_dssp EEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSGG-GHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CSTSHH
T ss_pred EecCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccchh-HHHHHHHHHHCCCcEEEEecCchhheeccCCceEEecCHH
Confidence 999999999999999999999999999999999999985 5788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEEEeCCCCCCCceeeeC
Q 022677 237 SAVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVSFF 293 (293)
Q Consensus 237 ~a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtIGIGaG~~~dGQvLV~ 293 (293)
++.+++++|++||+||||+|++||||+++++.|+++++|||||||||++|||||||+
T Consensus 160 ~a~~l~~~A~ale~AGaf~ivlE~vp~~la~~It~~l~IPtIGIGaG~~cDGQvLV~ 216 (261)
T PF02548_consen 160 EAEKLLEDAKALEEAGAFAIVLECVPAELAKAITEALSIPTIGIGAGPGCDGQVLVS 216 (261)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESBBHHHHHHHHHHSSS-EEEESS-STSSEEEE-H
T ss_pred HHHHHHHHHHHHHHcCccEEeeecCHHHHHHHHHHhCCCCEEecCCCCCCCceEEeH
Confidence 999999999999999999999999999999999999999999999999999999985
No 3
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=2.4e-78 Score=555.57 Aligned_cols=215 Identities=53% Similarity=0.873 Sum_probs=210.4
Q ss_pred cCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 78 ~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
++|+.+|++++++++||+|+|||||++|++++++|+|+||||||++|+++||++|.+||++||++|+++|+||++++||+
T Consensus 1 ~~t~~~~~~~k~~~~ki~~lTAYD~~~A~~~d~agvd~lLVGDSlgmvv~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv 80 (268)
T COG0413 1 KITTRTLIKMKQEGEKIVMLTAYDYPFAKLFDQAGVDVLLVGDSLGMVVLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVV 80 (268)
T ss_pred CccHHHHHHHHhcCCceEEEeccccHHHhhhhhcCCcEEEEeccHHHHHcCCCCcceecHHHHHHHHHHHHhcCCCeeEE
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHH
Q 022677 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (293)
Q Consensus 158 aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~ 237 (293)
+|||||||+.|++++++||.|+|||+||++||||||.| ..++|++|+++|||||||+|||||+.+++||||+|||++++
T Consensus 81 ~DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG~~-~~~~i~~L~~~gIPV~gHiGLtPQ~v~~~GGykvqGr~~~~ 159 (268)
T COG0413 81 ADLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGGEE-MAETIKRLTERGIPVMGHIGLTPQSVNWLGGYKVQGRTEES 159 (268)
T ss_pred eCCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcCCHH-HHHHHHHHHHcCCceEEEecCChhhhhccCCeeeecCCHHH
Confidence 99999999999999999999999999999999999975 57789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEEEeCCCCCCCceeeeC
Q 022677 238 AVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVSFF 293 (293)
Q Consensus 238 a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtIGIGaG~~~dGQvLV~ 293 (293)
+++++++|+++|+||||+++|||||+++++.||++++|||||||||++|||||||+
T Consensus 160 a~~l~~dA~ale~AGaf~ivlE~Vp~~lA~~IT~~lsiPtIGIGAG~~cDGQvLV~ 215 (268)
T COG0413 160 AEKLLEDAKALEEAGAFALVLECVPAELAKEITEKLSIPTIGIGAGPGCDGQVLVM 215 (268)
T ss_pred HHHHHHHHHHHHhcCceEEEEeccHHHHHHHHHhcCCCCEEeecCCCCCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999996
No 4
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=100.00 E-value=6.6e-76 Score=544.68 Aligned_cols=214 Identities=49% Similarity=0.793 Sum_probs=208.4
Q ss_pred cCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 78 ~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
|+|+.+|+++|++|+||+|+||||++||+++|++|||+|+||||++|+.|||+||.++|+|||++|+++|+|++++|||+
T Consensus 1 ~~t~~~~~~~~~~g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv 80 (263)
T TIGR00222 1 KKTTLSLLQKKKQEEKIVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIV 80 (263)
T ss_pred CCcHHHHHHHHhCCCcEEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHH
Q 022677 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (293)
Q Consensus 158 aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~ 237 (293)
+||||+||+ ++|++++||.|+++++||++||||||.+ ..+.+++++++|||||||+|||||+.+++|||++||||+++
T Consensus 81 ~DmPf~sy~-~~e~a~~na~rl~~eaGa~aVkiEgg~~-~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~ 158 (263)
T TIGR00222 81 TDLPFMSYA-TPEQALKNAARVMQETGANAVKLEGGEW-LVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEA 158 (263)
T ss_pred eCCCcCCCC-CHHHHHHHHHHHHHHhCCeEEEEcCcHh-HHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHH
Confidence 999999997 6999999999999999999999999965 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEEEeCCCCCCCceeeeC
Q 022677 238 AVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVSFF 293 (293)
Q Consensus 238 a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtIGIGaG~~~dGQvLV~ 293 (293)
++++++||++|++||||+||+||+|++++++|++++++||||||||++|||||||+
T Consensus 159 a~~~i~~A~a~e~AGA~~ivlE~vp~~~a~~It~~l~iP~iGIGaG~~~dGQvlV~ 214 (263)
T TIGR00222 159 AKKLLEDALALEEAGAQLLVLECVPVELAAKITEALAIPVIGIGAGNVCDGQILVM 214 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHhCCCCEEeeccCCCCCceeeeH
Confidence 99999999999999999999999999999999999999999999999999999995
No 5
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=100.00 E-value=1.2e-74 Score=537.31 Aligned_cols=215 Identities=54% Similarity=0.913 Sum_probs=209.6
Q ss_pred cCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 78 ~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
++|+.+||++|++++||+|+||||++||+++|++|||+|+||||++|+.||||||+.+|++||++|+++|+|++++|||+
T Consensus 1 ~~t~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vv 80 (264)
T PRK00311 1 RVTISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVV 80 (264)
T ss_pred CCCHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHH
Q 022677 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (293)
Q Consensus 158 aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~ 237 (293)
+|||||||+.|++++++|+.|+++++||++||||||.+ ..+.|++++++|||||||+|||||+++.+|||++||||+++
T Consensus 81 aD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~~-~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~ 159 (264)
T PRK00311 81 ADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGGEE-VAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEA 159 (264)
T ss_pred EeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCcHH-HHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHH
Confidence 99999999999999999999999889999999999964 46789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEEEeCCCCCCCceeeeC
Q 022677 238 AVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVSFF 293 (293)
Q Consensus 238 a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtIGIGaG~~~dGQvLV~ 293 (293)
++++++||++|++||||+||+||+|++++++|++++++||||||||++|||||||+
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~v~~~~~~~i~~~l~iP~igiGaG~~~dgqvlv~ 215 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLECVPAELAKEITEALSIPTIGIGAGPDCDGQVLVW 215 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhCCCCEEEeccCCCCCceeeeH
Confidence 99999999999999999999999999999999999999999999999999999995
No 6
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.8e-75 Score=528.10 Aligned_cols=222 Identities=80% Similarity=1.259 Sum_probs=217.0
Q ss_pred CCCCCCcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc
Q 022677 72 PQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (293)
Q Consensus 72 ~~~~~~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~ 151 (293)
|+++.|++|+.+||++|..|+||+|+|||||++|+|.+.+|+|.+|||||++|+++||++|.+++++||+|||++|+|++
T Consensus 18 ~~n~~k~~Ti~~lRqk~~~g~p~t~~TAYD~~~a~~~~~ag~dv~LVGDSl~Mt~~GhdtTlpiSl~e~~yH~~sV~Rga 97 (306)
T KOG2949|consen 18 PQNSNKRVTITTLRQKHRAGEPITMVTAYDYPSAVHFDTAGIDVCLVGDSLAMTVHGHDTTLPISLEEMLYHCRSVARGA 97 (306)
T ss_pred cccccceeeHHHHHHHHhcCCceEEEEecccchhhhhhhcCCcEEEeccchhheeeccccceeeeHHHHHHHHHHHHccC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccc
Q 022677 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ 231 (293)
Q Consensus 152 ~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vq 231 (293)
++|++++|||||+||.+.+++++||++.||++|+++||+|||...+...+++|+++||||+||+|||||..+.+||||+|
T Consensus 98 ~~~llv~DlPFgtyeS~~sda~knAv~vmk~~g~~~vK~EgGs~~~~~~~~~l~ergipV~gHvGLTPQ~v~~lGGyk~Q 177 (306)
T KOG2949|consen 98 KRPLLVGDLPFGTYESSWSDAVKNAVRVMKEGGMDAVKLEGGSNSRITAAKRLVERGIPVMGHVGLTPQAVSVLGGYKPQ 177 (306)
T ss_pred CCceEEEecCcccccccHHHHHHHHHHHHHhcCCceEEEccCcHHHHHHHHHHHHcCCceeeeccCChhhhhhccCcCcc
Confidence 99999999999999999999999999999999999999999987678899999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEEEeCCCCCCCceeeeC
Q 022677 232 GKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVSFF 293 (293)
Q Consensus 232 Grt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtIGIGaG~~~dGQvLV~ 293 (293)
||+...+.+++|.|.+||++|||.|++||||+.+++.||+.|+||||||||||+|||||||+
T Consensus 178 Gr~~~~a~~l~EtAmqLqk~Gc~svvlECvP~~~A~~iTs~lsiPTIGIGAG~~tsGQvLV~ 239 (306)
T KOG2949|consen 178 GRNIASAVKLVETAMQLQKAGCFSVVLECVPPPVAAAITSALSIPTIGIGAGPFTSGQVLVY 239 (306)
T ss_pred chhHHHHHHHHHHHHHHHhcccceEeeecCChHHHHHHHhccCCcceeeccCCCCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999995
No 7
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=100.00 E-value=1.9e-72 Score=520.05 Aligned_cols=212 Identities=55% Similarity=0.932 Sum_probs=206.2
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC
Q 022677 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (293)
Q Consensus 81 ~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm 160 (293)
+++||++|++++||+|+||||++||+++|++|||+|+||||++|++||||||+.+|++||++|+++|+|++++|||++||
T Consensus 1 ~~~lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~ 80 (254)
T cd06557 1 IPDLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADM 80 (254)
T ss_pred ChhHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHH
Q 022677 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (293)
Q Consensus 161 pfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e 240 (293)
|||||+.|++++++|+.|+++++||++||||||.+ ..+.|++++++|||||||+|||||+++.+|||++||||++++++
T Consensus 81 ~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~~-~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~ 159 (254)
T cd06557 81 PFGSYQTSPEQALRNAARLMKEAGADAVKLEGGAE-VAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAER 159 (254)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcHH-HHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHH
Confidence 99999988999999999999889999999999964 56789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEEEeCCCCCCCceeeeC
Q 022677 241 VVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVSFF 293 (293)
Q Consensus 241 ~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtIGIGaG~~~dGQvLV~ 293 (293)
+++||++|++||||+||+||+|++++++|++++++||||||||++|||||||+
T Consensus 160 ~i~ra~a~~~AGA~~i~lE~v~~~~~~~i~~~v~iP~igiGaG~~~dgqvlv~ 212 (254)
T cd06557 160 LLEDALALEEAGAFALVLECVPAELAKEITEALSIPTIGIGAGPDCDGQVLVW 212 (254)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhCCCCEEEeccCCCCCceeehH
Confidence 99999999999999999999999999999999999999999999999999995
No 8
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=100.00 E-value=2.4e-58 Score=422.97 Aligned_cols=209 Identities=37% Similarity=0.604 Sum_probs=199.4
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCC
Q 022677 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (293)
Q Consensus 82 ~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmp 161 (293)
.+|++++++++||+++||||++||+++|++|||+|+||||++|+.+||||+..+|++||++|+++|+|+++.++|++|+|
T Consensus 2 ~~~~~~~~~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~ 81 (240)
T cd06556 2 WLLQKYKQEKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLP 81 (240)
T ss_pred HhHHHHHhCCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 46888988899999999999999999999999999999999999999999999999999999999999998777999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHH
Q 022677 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241 (293)
Q Consensus 162 fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~ 241 (293)
+|+| .+++++++|+.++++ +||++||||||.+ ..+.++++++++|+||+|++++||+.+++|||+++||+.++++++
T Consensus 82 ~G~g-~~~~~~~~~~~~l~~-aGa~gv~iED~~~-~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~a 158 (240)
T cd06556 82 FGAY-GAPTAAFELAKTFMR-AGAAGVKIEGGEW-HIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQL 158 (240)
T ss_pred CCCC-cCHHHHHHHHHHHHH-cCCcEEEEcCcHH-HHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHH
Confidence 9877 488999999999995 9999999999974 456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEEEeCCCCCCCceeeeC
Q 022677 242 VETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVSFF 293 (293)
Q Consensus 242 l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtIGIGaG~~~dGQvLV~ 293 (293)
|+||++|++||||+||+|++|.+++++|++++++|+++||+|++|||||||+
T Consensus 159 i~Ra~ay~~AGAd~i~~e~~~~e~~~~i~~~~~~P~~~~gag~~~dgq~lv~ 210 (240)
T cd06556 159 IADALAYAPAGADLIVMECVPVELAKQITEALAIPLAGIGAGSGTDGQFLVL 210 (240)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhCCCCEEEEecCcCCCceEEeH
Confidence 9999999999999999999999999999999999999999999999999985
No 9
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=100.00 E-value=3.4e-35 Score=269.43 Aligned_cols=184 Identities=23% Similarity=0.267 Sum_probs=160.2
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCC
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfG 163 (293)
||++|++++||+++|+||++||+++|++|||++++||+..++++||||++.+|++||++|++.|+++++.| +++|+|+|
T Consensus 1 ~r~l~~~~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~P-v~~D~~~G 79 (243)
T cd00377 1 LRALLESGGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLP-VIADADTG 79 (243)
T ss_pred ChhHHhCCCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCC-EEEEcCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999 99999996
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEecc---ccceee----------eec--CCc
Q 022677 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG---LTPQAI----------SVL--GGF 228 (293)
Q Consensus 164 sy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiG---LtPq~~----------~~l--gGf 228 (293)
|+ +++++.+|+.+++ ++|+++|||||+. .+ +.|||.| +.|..+ ..- .+|
T Consensus 80 -~g-~~~~~~~~v~~~~-~~G~~gv~iED~~---~~----------k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~ 143 (243)
T cd00377 80 -YG-NALNVARTVRELE-EAGAAGIHIEDQV---GP----------KKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDF 143 (243)
T ss_pred -CC-CHHHHHHHHHHHH-HcCCEEEEEecCC---CC----------ccccCCCCCeecCHHHHHHHHHHHHHHHhccCCe
Confidence 85 7899999988888 5999999999986 33 5788865 333222 112 378
Q ss_pred ccccCCHHH------HHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHHhcCCCEEEeCCCC
Q 022677 229 RPQGKNVTS------AVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGIGAGP 284 (293)
Q Consensus 229 ~vqGrt~~~------a~e~l~rA~a~eeAGA~~IvlE~vp-~e~a~~It~~l~iPtIGIGaG~ 284 (293)
.+.+|||.. .+++++|+++|++||||++|+|++. .+.+++++++++.|++..-..+
T Consensus 144 ~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~~~ 206 (243)
T cd00377 144 VIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAPDVPLNVNMTPG 206 (243)
T ss_pred EEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecCC
Confidence 888987653 4699999999999999999999986 6888999999999999764433
No 10
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=100.00 E-value=3.8e-33 Score=262.85 Aligned_cols=180 Identities=17% Similarity=0.226 Sum_probs=157.9
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECc-hhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC
Q 022677 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (293)
Q Consensus 82 ~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGd-Sla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm 160 (293)
..||++|++++++++|++||+.|||++|++||+++.++. +++++++|+||.+.+|++||+.++++|++.++.| |++|.
T Consensus 7 ~~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iP-viaD~ 85 (292)
T PRK11320 7 ARFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLP-LLVDI 85 (292)
T ss_pred HHHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCC-EEEEC
Confidence 459999999999999999999999999999999997554 5566899999999999999999999999999999 89999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEecc---ccceee-----------eecC
Q 022677 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG---LTPQAI-----------SVLG 226 (293)
Q Consensus 161 pfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiG---LtPq~~-----------~~lg 226 (293)
+. ||+ +++++.+++.++. ++||.||+|||+. .| +.|||.+ |.|..+ ....
T Consensus 86 d~-GyG-~~~~v~r~V~~~~-~aGaagi~IEDq~---~p----------K~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~ 149 (292)
T PRK11320 86 DT-GFG-GAFNIARTVKSMI-KAGAAAVHIEDQV---GA----------KRCGHRPNKEIVSQEEMVDRIKAAVDARTDP 149 (292)
T ss_pred CC-CCC-CHHHHHHHHHHHH-HcCCeEEEEecCC---Cc----------cccCCCCCCcccCHHHHHHHHHHHHHhccCC
Confidence 97 597 9999999988877 7999999999986 35 6899973 555322 1235
Q ss_pred CcccccCCHHH----HHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHHhcCCCEE
Q 022677 227 GFRPQGKNVTS----AVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTI 278 (293)
Q Consensus 227 Gf~vqGrt~~~----a~e~l~rA~a~eeAGA~~IvlE~vp-~e~a~~It~~l~iPtI 278 (293)
+|.+.+||+.. .+++|+|+++|++||||+||+|++. .+.++++++++++|++
T Consensus 150 d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~ 206 (292)
T PRK11320 150 DFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMTELEMYRRFADAVKVPIL 206 (292)
T ss_pred CeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhcCCCEE
Confidence 79999999874 4799999999999999999999987 6899999999999994
No 11
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=100.00 E-value=6.7e-33 Score=261.36 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=154.5
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEE-CchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC
Q 022677 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (293)
Q Consensus 82 ~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dailv-GdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm 160 (293)
..||++|++++||++||+||+.|||++|++||+++.+ |.+.+++++|+||.+.+|++||+.++++|++.++.| |++|+
T Consensus 6 ~~~r~l~~~~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lP-v~aD~ 84 (294)
T TIGR02319 6 RTFRELMNAPEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVP-VIMDA 84 (294)
T ss_pred HHHHHHhcCCCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCC-EEEEC
Confidence 5699999999999999999999999999999999986 566666789999999999999999999999999999 99999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEecc---ccceee-----------eecC
Q 022677 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG---LTPQAI-----------SVLG 226 (293)
Q Consensus 161 pfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiG---LtPq~~-----------~~lg 226 (293)
+. ||+. +.++.+++.++. ++|+.||+|||+. .| +.|||.+ |.|..+ ....
T Consensus 85 dt-GyG~-~~~v~r~V~~~~-~aGaagi~IEDq~---~p----------K~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~ 148 (294)
T TIGR02319 85 DA-GYGN-AMSVWRATREFE-RVGIVGYHLEDQV---NP----------KRCGHLEGKRLISTEEMTGKIEAAVEAREDE 148 (294)
T ss_pred CC-CCCC-cHHHHHHHHHHH-HcCCeEEEEECCC---Cc----------cccCCCCCccccCHHHHHHHHHHHHHhccCC
Confidence 97 5964 455788877776 7999999999986 34 6899974 555322 1125
Q ss_pred CcccccCCHHH----HHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHHhcCCCE
Q 022677 227 GFRPQGKNVTS----AVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPT 277 (293)
Q Consensus 227 Gf~vqGrt~~~----a~e~l~rA~a~eeAGA~~IvlE~vp-~e~a~~It~~l~iPt 277 (293)
+|.+.+||+.. .+++|+|+++|.+||||+||+|++. .+.+++++++++.|+
T Consensus 149 d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~ 204 (294)
T TIGR02319 149 DFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEIDAPL 204 (294)
T ss_pred CeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhcCCCe
Confidence 79999999864 5799999999999999999999987 688999999999998
No 12
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=100.00 E-value=6.9e-33 Score=260.31 Aligned_cols=179 Identities=17% Similarity=0.197 Sum_probs=156.9
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCC
Q 022677 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (293)
Q Consensus 83 ~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpf 162 (293)
.||++|++++++++|++||+.||+++|++||+++.++.+..+.++||||.+.+|++||+.+++.|++.++.| |++|.+.
T Consensus 4 ~lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iP-viaD~d~ 82 (285)
T TIGR02317 4 AFRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLP-LLVDADT 82 (285)
T ss_pred HHHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCC-EEEECCC
Confidence 599999999999999999999999999999999987765555699999999999999999999999999999 8999997
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEecc---ccceee-----------eecCCc
Q 022677 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG---LTPQAI-----------SVLGGF 228 (293)
Q Consensus 163 Gsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiG---LtPq~~-----------~~lgGf 228 (293)
||+ ++.++.+++.++. ++||.||+|||+. .+ |.|||.+ |.|..+ ....+|
T Consensus 83 -GyG-~~~~v~~tv~~~~-~aG~agi~IEDq~---~p----------K~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~ 146 (285)
T TIGR02317 83 -GFG-EAFNVARTVREME-DAGAAAVHIEDQV---LP----------KRCGHLPGKELVSREEMVDKIAAAVDAKRDEDF 146 (285)
T ss_pred -CCC-CHHHHHHHHHHHH-HcCCeEEEEecCC---Cc----------cccCCCCCccccCHHHHHHHHHHHHHhccCCCE
Confidence 596 5999999988877 7999999999986 34 6899974 555322 112479
Q ss_pred ccccCCHHH----HHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHHhcCCCEE
Q 022677 229 RPQGKNVTS----AVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTI 278 (293)
Q Consensus 229 ~vqGrt~~~----a~e~l~rA~a~eeAGA~~IvlE~vp-~e~a~~It~~l~iPtI 278 (293)
.+.+||+.. .+++|+|+++|.+||||+||+|++. .+.++++++++++|++
T Consensus 147 ~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i~~Pl~ 201 (285)
T TIGR02317 147 VIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEALTSLEEFRQFAKAVKVPLL 201 (285)
T ss_pred EEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 999999874 5799999999999999999999987 6888999999999994
No 13
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=100.00 E-value=1.6e-32 Score=251.95 Aligned_cols=180 Identities=21% Similarity=0.237 Sum_probs=145.0
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCC
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfG 163 (293)
||+||++++|+++|++||+.|||++|++||+++.++....++++|+||.+.+|++||+.+++.|++.++.| |++|++.
T Consensus 1 fr~L~~~~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iP-v~vD~d~- 78 (238)
T PF13714_consen 1 FRQLHEPGKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIP-VIVDADT- 78 (238)
T ss_dssp HHHHHHSSSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSE-EEEE-TT-
T ss_pred ChhhhcCCCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCc-EEEEccc-
Confidence 78899988999999999999999999999999998766656788999999999999999999999999988 9999998
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC-C----------CcHHHHHHHHHcCCcEEEeccccceeeeecCCccccc
Q 022677 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGS-P----------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (293)
Q Consensus 164 sy~~s~e~av~~A~rl~keaGa~gVkiEgg~-~----------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqG 232 (293)
+|+.+++++.+++.++. ++|+.||+|||+. . .....||++.+ .....||.+.+
T Consensus 79 GyG~~~~~v~~tv~~~~-~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~---------------a~~~~~~~I~A 142 (238)
T PF13714_consen 79 GYGNDPENVARTVRELE-RAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVD---------------ARRDPDFVIIA 142 (238)
T ss_dssp TSSSSHHHHHHHHHHHH-HCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHH---------------HHSSTTSEEEE
T ss_pred ccCchhHHHHHHHHHHH-HcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHH---------------hccCCeEEEEE
Confidence 59877999999988887 7999999999982 0 01112222221 01234588888
Q ss_pred CCHH------HHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHHhcCCCEEEeC
Q 022677 233 KNVT------SAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 233 rt~~------~a~e~l~rA~a~eeAGA~~IvlE~vp-~e~a~~It~~l~iPtIGIG 281 (293)
||+. ..+|+|+|+++|.|||||+||+|++. .+.++++++++++|++.+-
T Consensus 143 RTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~v~~ 198 (238)
T PF13714_consen 143 RTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVDGPLNVNP 198 (238)
T ss_dssp EECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHSSEEEEET
T ss_pred eccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 8877 34899999999999999999999998 6778999999999998776
No 14
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-32 Score=256.57 Aligned_cols=179 Identities=20% Similarity=0.239 Sum_probs=156.3
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC
Q 022677 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (293)
Q Consensus 81 ~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm 160 (293)
-..||++|+++.|+++||+||..||++++++||+++.++.+..+.++|+||.+.+|++|+++++++|+++++.| |++|+
T Consensus 7 ~~~fR~l~~~~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lP-v~vD~ 85 (289)
T COG2513 7 GAAFRALHASGDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLP-VLVDI 85 (289)
T ss_pred HHHHHHHHhCCCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCc-eEEec
Confidence 34699999999999999999999999999999999986655555599999999999999999999999999999 88888
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEec---cccceee-----------eecC
Q 022677 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHV---GLTPQAI-----------SVLG 226 (293)
Q Consensus 161 pfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHi---GLtPq~~-----------~~lg 226 (293)
+. ||+. +.++.+|+.++. ++|+.||+|||+. .+ +.|||+ .|.|..+ ....
T Consensus 86 dt-GfG~-~~nvartV~~~~-~aG~agi~iEDq~---~p----------k~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~ 149 (289)
T COG2513 86 DT-GFGE-ALNVARTVRELE-QAGAAGIHIEDQV---GP----------KRCGHLPGKELVSIDEMVDRIKAAVEARRDP 149 (289)
T ss_pred cC-CCCc-HHHHHHHHHHHH-HcCcceeeeeecc---cc----------hhcCCCCCCCcCCHHHHHHHHHHHHHhccCC
Confidence 87 4864 899999987777 6999999999987 44 699996 3666433 1236
Q ss_pred CcccccCCHHHH----HHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHHhcCCC
Q 022677 227 GFRPQGKNVTSA----VKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIP 276 (293)
Q Consensus 227 Gf~vqGrt~~~a----~e~l~rA~a~eeAGA~~IvlE~vp-~e~a~~It~~l~iP 276 (293)
+|.+.+||+... +++|+||++|+|||||+||.|++. .+.++++++++++|
T Consensus 150 ~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~~p 204 (289)
T COG2513 150 DFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVPVP 204 (289)
T ss_pred CeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcCCC
Confidence 899999998764 799999999999999999999998 69999999999944
No 15
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=99.97 E-value=5.3e-31 Score=248.06 Aligned_cols=188 Identities=16% Similarity=0.111 Sum_probs=155.9
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCC
Q 022677 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (293)
Q Consensus 82 ~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmp 161 (293)
+.||++.++++++++|++||+.||+++|++||++|.++.+..++++||||.+.+|++||+.++++|++.++.| |++|++
T Consensus 5 ~~lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lP-v~aD~d 83 (290)
T TIGR02321 5 QALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIP-LIADID 83 (290)
T ss_pred HHHHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCC-EEEECC
Confidence 4699999999999999999999999999999999998765555679999999999999999999999999999 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEec-----cccceee-----------eec
Q 022677 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHV-----GLTPQAI-----------SVL 225 (293)
Q Consensus 162 fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHi-----GLtPq~~-----------~~l 225 (293)
. +|+..+ ++.+|+.++. ++||.||+||||. .| +.|||. .|.|..+ ...
T Consensus 84 ~-GyG~~~-~v~~tV~~~~-~aGvagi~IEDq~---~p----------k~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~ 147 (290)
T TIGR02321 84 T-GFGNAV-NVHYVVPQYE-AAGASAIVMEDKT---FP----------KDTSLRTDGRQELVRIEEFQGKIAAATAARAD 147 (290)
T ss_pred C-CCCCcH-HHHHHHHHHH-HcCCeEEEEeCCC---CC----------cccccccCCCccccCHHHHHHHHHHHHHhCCC
Confidence 7 597555 7888888877 7999999999986 34 578885 2444211 123
Q ss_pred CCcccccCCHHH-----HHHHHHHHHHHHHcCCcEEEecCC-C-HHHHHHHHHhcCC--CEEEe-CCCCCC
Q 022677 226 GGFRPQGKNVTS-----AVKVVETALALQEVGCFSVVLECV-P-PPVAAAATSALQI--PTIGI-GAGPFC 286 (293)
Q Consensus 226 gGf~vqGrt~~~-----a~e~l~rA~a~eeAGA~~IvlE~v-p-~e~a~~It~~l~i--PtIGI-GaG~~~ 286 (293)
.+|.+.+||+.. .+++|+|+++|.+||||+||+|+. . .+.+++++++++. |++.+ |.+|..
T Consensus 148 ~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~ 218 (290)
T TIGR02321 148 RDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLVLVPTAYPQL 218 (290)
T ss_pred CCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCC
Confidence 579999999875 379999999999999999999973 3 7888999999984 77644 344543
No 16
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=99.96 E-value=2.1e-28 Score=229.95 Aligned_cols=180 Identities=14% Similarity=0.084 Sum_probs=151.2
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHc---------CCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCC
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAVHLDSA---------GIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP 154 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAriae~A---------G~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p 154 (293)
||++.++++++++|++||+.||+++|++ |||++.++.+..++++|+||.+.+|++||+.+++.|.++++.|
T Consensus 1 lr~~l~~~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~P 80 (285)
T TIGR02320 1 LRQLLHSKPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKP 80 (285)
T ss_pred ChHHhcCCCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCC
Confidence 5777888899999999999999999999 9999987655545789999999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEecc------ccceee------
Q 022677 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG------LTPQAI------ 222 (293)
Q Consensus 155 ~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiG------LtPq~~------ 222 (293)
|++|.+.| + ++++..+++.++. ++|++||+|||+. .+ ++|||.| +.|..+
T Consensus 81 -v~~D~d~G--g-~~~~v~r~V~~l~-~aGvaGi~iEDq~---~p----------k~cg~~~~~~~~~l~s~ee~~~kI~ 142 (285)
T TIGR02320 81 -IILDGDTG--G-NFEHFRRLVRKLE-RRGVSAVCIEDKL---GL----------KKNSLFGNDVAQPQASVEEFCGKIR 142 (285)
T ss_pred -EEEecCCC--C-CHHHHHHHHHHHH-HcCCeEEEEeccC---CC----------ccccccCCCCcccccCHHHHHHHHH
Confidence 89999987 3 8999999988887 6999999999986 33 6899875 223211
Q ss_pred -----eecCCcccccCCHHH-----HHHHHHHHHHHHHcCCcEEEecC-CC-HHHHHHHHHhcC-----CCEEEeC
Q 022677 223 -----SVLGGFRPQGKNVTS-----AVKVVETALALQEVGCFSVVLEC-VP-PPVAAAATSALQ-----IPTIGIG 281 (293)
Q Consensus 223 -----~~lgGf~vqGrt~~~-----a~e~l~rA~a~eeAGA~~IvlE~-vp-~e~a~~It~~l~-----iPtIGIG 281 (293)
..-++|.+.+||+.. .+++++|+++|++||||+||+|+ .+ .+.+++++++++ +|++.+.
T Consensus 143 Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~ 218 (285)
T TIGR02320 143 AGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVP 218 (285)
T ss_pred HHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEec
Confidence 123568889998764 47999999999999999999997 44 678889999984 5887543
No 17
>PRK15063 isocitrate lyase; Provisional
Probab=99.92 E-value=1.4e-24 Score=212.77 Aligned_cols=191 Identities=15% Similarity=0.159 Sum_probs=155.6
Q ss_pred cCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECc-hhhh----hhccCCCCccCCHHHHHHHHHHHHcccC
Q 022677 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGD-SAAM----VVHGHDTTLPITLEEMLVHCRAVARGAK 152 (293)
Q Consensus 78 ~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGd-Sla~----~~lG~~dt~~vtl~eml~h~raV~Ra~~ 152 (293)
+...+.|+++.++++++..++|||..+|++++++|+++|.++. .+++ ..+||||.+.+++++|..++++|.+++.
T Consensus 49 ~~~a~kLr~lL~~~~~~~~~Ga~d~~~A~q~~~aGf~AIy~SG~~vAa~~~~s~~g~PD~~l~p~~~v~~~v~~I~~a~~ 128 (428)
T PRK15063 49 RRGAEKLWELLHGEPYVNALGALTGNQAVQQVKAGLKAIYLSGWQVAADANLAGQMYPDQSLYPANSVPAVVKRINNALR 128 (428)
T ss_pred HHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHhCCCEEEECHHHHhcCcccccCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 5667789999999999999999999999999999999997654 4444 3799999999999999999999998863
Q ss_pred ------------------CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEe
Q 022677 153 ------------------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGH 214 (293)
Q Consensus 153 ------------------~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GH 214 (293)
.| |++|.+. ||+ ++.++.+++.+++ ++||.||+||||.. .+ |.|||
T Consensus 129 ~~d~~~~~~~~~~~~d~~~P-IiADaDt-GfG-g~~nv~~~vk~~i-eAGaAGIhiEDQ~~--~~----------KkCGH 192 (428)
T PRK15063 129 RADQIQWSEGDKGYIDYFAP-IVADAEA-GFG-GVLNAFELMKAMI-EAGAAGVHFEDQLA--SE----------KKCGH 192 (428)
T ss_pred HhhhHhhhhcccccccCCCC-eEEECCC-CCC-CcHHHHHHHHHHH-HcCCeEEEEeCCCC--Cc----------cccCC
Confidence 57 8888887 486 4556888877776 79999999999962 23 68999
Q ss_pred cc---ccceeee------------ec-CCcccccCCHHH--------------------------------HHHHHHHHH
Q 022677 215 VG---LTPQAIS------------VL-GGFRPQGKNVTS--------------------------------AVKVVETAL 246 (293)
Q Consensus 215 iG---LtPq~~~------------~l-gGf~vqGrt~~~--------------------------------a~e~l~rA~ 246 (293)
.+ |+|..+. .+ ..|.+.+|||+. .+++|+|++
T Consensus 193 ~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~ 272 (428)
T PRK15063 193 MGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGL 272 (428)
T ss_pred CCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccccccccccccccccCCCccccccccccCHHHHHHHHH
Confidence 85 7774331 11 247888898873 469999999
Q ss_pred HHHHcCCcEEEecC-CC-HHHHHHHHHhcCC--C--EEEeCCCCC
Q 022677 247 ALQEVGCFSVVLEC-VP-PPVAAAATSALQI--P--TIGIGAGPF 285 (293)
Q Consensus 247 a~eeAGA~~IvlE~-vp-~e~a~~It~~l~i--P--tIGIGaG~~ 285 (293)
+|.+ |||+||+|+ .| .+.++.+++.++. | ++..|..|.
T Consensus 273 AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~~~~P~~~layn~sPs 316 (428)
T PRK15063 273 AYAP-YADLIWCETSTPDLEEARRFAEAIHAKFPGKLLAYNCSPS 316 (428)
T ss_pred HHhc-CCCEEEeCCCCCCHHHHHHHHHhhcccCccceeecCCCCC
Confidence 9999 999999996 77 5899999999986 8 666665554
No 18
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=99.25 E-value=1.5e-11 Score=123.62 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=85.9
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhc-----cCCCCccCCHHHHHHHHHHHHcc--------
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVH-----GHDTTLPITLEEMLVHCRAVARG-------- 150 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~l-----G~~dt~~vtl~eml~h~raV~Ra-------- 150 (293)
|++..++++++-.++|||..+|...+++ +|.|.++....+..+ +|||-...+++.+...++.|.++
T Consensus 51 l~~~~~~~~~~~tlGAld~~qa~q~~ka-l~aIY~SGwq~Sa~~~~~~e~~PD~s~yp~~tVp~~V~~i~~aq~~hDr~q 129 (527)
T TIGR01346 51 LTQHGDNKTYSNTFGALDPVQASQMAKY-LDAIYLSGWQCSSTANTSNEPGPDLADYPADTVPNKVEHLFNAQLFHDRKQ 129 (527)
T ss_pred HHHhhhcCCceeeccccCHHHHHHHHHH-hhheehhHHHHHhhhcccCCCCCCcccccccccHHHHHHHHHHHHHHHHHH
Confidence 4444456789999999999999999999 999986554444444 99999999999999999999877
Q ss_pred -------------------cCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 022677 151 -------------------AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (293)
Q Consensus 151 -------------------~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~ 194 (293)
.-.| |++|.+. ||+... ++.+++.+++ ++||.||+|||+.
T Consensus 130 ~~~~~~~~~~~r~~~~~~D~~iP-IiaD~Dt-GyG~~~-~v~~~vk~~i-eaGAaGI~IEDq~ 188 (527)
T TIGR01346 130 REARDTSVDNERSKTPYIDYLVP-IVADGDA-GFGGAT-AVFKLQKAFI-ERGAAGVHWEDQL 188 (527)
T ss_pred HHhccccchhhhccccccccccc-eEEECCC-CCCCcH-HHHHHHHHHH-HcCCeEEEEEcCC
Confidence 3345 8899997 486544 4889988877 7999999999984
No 19
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=98.85 E-value=6.9e-09 Score=101.66 Aligned_cols=189 Identities=15% Similarity=0.169 Sum_probs=130.6
Q ss_pred CCHHHHHHhhhC---CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhh---hhcc--CCCCccCCHHHHHHHHHHHHcc
Q 022677 79 VTLTHLRQKHKN---GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM---VVHG--HDTTLPITLEEMLVHCRAVARG 150 (293)
Q Consensus 79 ~t~~~Lr~l~~~---g~pi~m~tayD~~SAriae~AG~DailvGdSla~---~~lG--~~dt~~vtl~eml~h~raV~Ra 150 (293)
.....|.++.+. +..+.-++|||..-|.-.-++|.++|.++.+.-+ ..-| |||-..-+++-.-..+++|-++
T Consensus 49 ~~A~kl~~ll~e~~~~~~~~tlGal~g~qa~Q~~kagl~aiYlSGWqvaa~~n~~~~~~PDqs~Yp~~sVP~~V~rI~~a 128 (433)
T COG2224 49 LGAAKLWELLHELFKEKYVNTLGALTGGQAVQMAKAGIKAIYLSGWQVAADANLAGEMYPDQSLYPANSVPDVVKRINNA 128 (433)
T ss_pred HHHHHHHHHHHHhccccchhccccCCHHHHHHHHHhhhheEEeccceeeccccccCCCCCCcccCccccccHHHHHHHHH
Confidence 344455555544 7888999999999999999999999976544333 2344 8888887777665555555443
Q ss_pred c------------C---------CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCC
Q 022677 151 A------------K---------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGI 209 (293)
Q Consensus 151 ~------------~---------~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GI 209 (293)
. . ..+||+|-+. +|+ ++..+.+-+.+++ |+||.||++|||.. +-
T Consensus 129 l~~aD~~q~~~~~~~~~~~~~Dy~~PIiADada-GfG-g~~~~~~L~K~~I-EaGaagiH~EDQ~a------------~~ 193 (433)
T COG2224 129 LRRADQIQWSEGKGPGDRQAVDYFLPIVADAEA-GFG-GPLNAFELMKAMI-EAGAAGVHFEDQLA------------SE 193 (433)
T ss_pred HHHHHHHHHHhccccccccccccccceeecccc-CCC-chHHHHHHHHHHH-HhCCceeehhhhcc------------cc
Confidence 1 1 1348877776 363 6788888888888 79999999999862 33
Q ss_pred cEEEecc---ccceeeee--------------cCCcccccCCHHHH--------------------------------HH
Q 022677 210 AVMGHVG---LTPQAISV--------------LGGFRPQGKNVTSA--------------------------------VK 240 (293)
Q Consensus 210 pV~GHiG---LtPq~~~~--------------lgGf~vqGrt~~~a--------------------------------~e 240 (293)
+.|||.| |+|..++. .++ .+++|||+++ +.
T Consensus 194 KkCGH~gGkVlVPt~e~i~rL~AaRla~Dvmgv~t-vlvARTDa~aA~Lits~~D~~d~~fi~~~Rt~eG~y~~k~Gie~ 272 (433)
T COG2224 194 KKCGHLGGKVLVPTQEAIRRLNAARLAADVMGVPT-ILVARTDAEAADLITSDVDPSDGEFITGERTSEGFYRTKGGIEQ 272 (433)
T ss_pred cccccCCCeEeccHHHHHHHHHHHHHHHHHhCCCc-eEEEecchhhcccccccCCcccCCccCCCcCCCceeeecCchHH
Confidence 7999987 88854420 122 3445555443 57
Q ss_pred HHHHHHHHHHcCCcEEEecC-CCH-HHHHHHHHhcC--CC--EEEeCCCC
Q 022677 241 VVETALALQEVGCFSVVLEC-VPP-PVAAAATSALQ--IP--TIGIGAGP 284 (293)
Q Consensus 241 ~l~rA~a~eeAGA~~IvlE~-vp~-e~a~~It~~l~--iP--tIGIGaG~ 284 (293)
.|+|+.+|.--| |+|-+|. .|. +.++...+.+. .| .+.++..|
T Consensus 273 aI~r~lA~Apya-Dl~W~ET~~Pdle~ak~Fae~Ih~~~P~~~LaYN~SP 321 (433)
T COG2224 273 AIARGLAYAPYA-DLLWCETSTPDLEEARQFAEAIHAKYPGKLLAYNCSP 321 (433)
T ss_pred HHHHHHhcCccc-ceEEEecCCCCHHHHHHHHHHHHHhCCcceeeecCCC
Confidence 899999999988 9999996 563 77777766653 33 44554444
No 20
>PRK06498 isocitrate lyase; Provisional
Probab=98.45 E-value=7.7e-07 Score=89.43 Aligned_cols=144 Identities=13% Similarity=0.097 Sum_probs=92.0
Q ss_pred cCCHHHHHHhhhC-----CCcEEEEecCCHHHHHHHHHc---CC-----cEEEECc-hhhhh--hcc-CCCCccCCHHHH
Q 022677 78 RVTLTHLRQKHKN-----GEPITMVTAYDYPSAVHLDSA---GI-----DICLVGD-SAAMV--VHG-HDTTLPITLEEM 140 (293)
Q Consensus 78 ~~t~~~Lr~l~~~-----g~pi~m~tayD~~SAriae~A---G~-----DailvGd-Sla~~--~lG-~~dt~~vtl~em 140 (293)
|.|...++++... .+..--++||+..-|.---.+ |+ +.|.+.. -+++. ..| |||-..-+.+-+
T Consensus 47 ~~~a~~~~~~m~~yd~d~~~y~~slGa~~g~~a~Q~~~a~k~~~~~t~~~~iYlSGW~vAa~~n~~g~~PDqS~yp~~sV 126 (531)
T PRK06498 47 KYTAKIMRADMAAYDADSSKYTQSLGCWHGFIAQQKMISIKKHFGTTKRRYLYLSGWMVAALRSEFGPLPDQSMHEKTSV 126 (531)
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhcCCcHHHHHHHHHHHHhccCCCccceEEehhhHHHhhhhccCCCCCcccCccccH
Confidence 5677778887665 456678899999999877777 88 8996543 33332 133 777654443322
Q ss_pred HHHHHHH---------------------Hc--c-----------cC------CCeEEeeCCCCCCCCCHHHHHHHHHHHH
Q 022677 141 LVHCRAV---------------------AR--G-----------AK------RPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (293)
Q Consensus 141 l~h~raV---------------------~R--a-----------~~------~p~vvaDmpfGsy~~s~e~av~~A~rl~ 180 (293)
-..++.| .+ + .. .| |++|... ||+ ++.++.+++.+++
T Consensus 127 P~lv~~i~~~l~~AD~~~~~~lf~~~~~a~~~g~~~~~~~~~~~~d~~~~~~iP-IIADaDt-GfG-~~~nv~r~vk~~i 203 (531)
T PRK06498 127 PALIEELYTFLRQADARELNDLFRELDAAREAGDKAKEAAIQAKIDNFETHVVP-IIADIDA-GFG-NEEATYLLAKKMI 203 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhhccccccccccc-eEEEcCC-CCC-cHHHHHHHHHHHH
Confidence 2211111 12 1 11 35 7777776 374 7888999887766
Q ss_pred HHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEecc---ccceeee------------ec--CCcccccCCHHH
Q 022677 181 KEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG---LTPQAIS------------VL--GGFRPQGKNVTS 237 (293)
Q Consensus 181 keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiG---LtPq~~~------------~l--gGf~vqGrt~~~ 237 (293)
++||.||+|||+.. .+ +.|||.+ |+|..+. .+ ++|.+++||++.
T Consensus 204 -eAGAAgIhIEDQv~--~~----------KkCGHl~GK~lVp~ee~i~KI~AAr~A~d~~G~~D~vIIARTDA~ 264 (531)
T PRK06498 204 -EAGACCIQIENQVS--DE----------KQCGHQDGKVTVPHEDFLAKIRAVRYAFLELGVDDGVIVARTDSL 264 (531)
T ss_pred -HhCCeEEEEecCCC--CC----------CCCCCCCCCEeccHHHHHHHHHHHHHHHHhcCCCCEEEEEecchh
Confidence 79999999999862 23 6888875 6664331 11 357777777654
No 21
>KOG1260 consensus Isocitrate lyase [Energy production and conversion]
Probab=98.35 E-value=5.6e-06 Score=82.31 Aligned_cols=162 Identities=17% Similarity=0.203 Sum_probs=104.9
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEE-ECchhhhhhccC--CCCccCCHH---HHHHHHHHHHcccC----
Q 022677 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGH--DTTLPITLE---EMLVHCRAVARGAK---- 152 (293)
Q Consensus 83 ~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dail-vGdSla~~~lG~--~dt~~vtl~---eml~h~raV~Ra~~---- 152 (293)
.|++-|.+|.+.--++++|..+|....++|.+.++ .|=-++.+..|- ||-..-+++ ++..+......-..
T Consensus 56 llr~~~n~gtvs~t~Ga~dpvq~sq~~r~gl~~iyiSG~~cs~~~~~~~~pD~adyP~dtvP~~v~rif~~q~~h~r~q~ 135 (492)
T KOG1260|consen 56 LLREHHNEGTVSDTLGAKDPVQASQMARAGLSAIYISGWQCSATLSGKLGPDRADYPYDTVPESVERIFKSQLIHDRKQI 135 (492)
T ss_pred HHHHhccCCcccccccccCchhHHHHHHhcCCeEEeechhhhhhhccCCCCccccCCCcCCHHHHHHHHHHhhhcchhhh
Confidence 34555666766558899999999999999999996 555555555444 675555544 44444433322222
Q ss_pred -------------CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEecc---
Q 022677 153 -------------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG--- 216 (293)
Q Consensus 153 -------------~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiG--- 216 (293)
.| |++|-.. || .++..+.+++..++ |+||+||+|||+.. |-+.|||..
T Consensus 136 ~~~~i~~~~~dyl~P-IIaDad~-G~-G~atnv~k~~K~fI-eaGaAGIhleDq~~------------~~k~cgh~sGr~ 199 (492)
T KOG1260|consen 136 EAGSIKAEESDYLIP-IIADADA-GF-GGATNVFKTVKGFI-EAGAAGIHLEDQAC------------GEKKCGHMSGRV 199 (492)
T ss_pred hhccccccccccccc-eeecCCC-CC-chHHHHHHHHHHHH-Hcccceeeeehhhc------------ccccccccCCcE
Confidence 46 6655444 24 25678888888888 69999999999862 227899974
Q ss_pred ccceeeee-------------cCCcccccCCHHHHHHHHH---HHHHHHHcCCcEEEecC
Q 022677 217 LTPQAISV-------------LGGFRPQGKNVTSAVKVVE---TALALQEVGCFSVVLEC 260 (293)
Q Consensus 217 LtPq~~~~-------------lgGf~vqGrt~~~a~e~l~---rA~a~eeAGA~~IvlE~ 260 (293)
++|..++. -.++.+++|||.++.+++. |++....+|.+..=.+.
T Consensus 200 VVPt~ehv~Rl~a~R~~~Dim~sd~iivARTDs~a~~l~tS~iDpRDh~~i~g~~~~~~s 259 (492)
T KOG1260|consen 200 VVPTEEHVRRLKAARLAADIMGADTIIVARTDSRAASLLTSLIDPRDHAFIGGATLSNDS 259 (492)
T ss_pred EecHHHHHHHHHHHHHHHHHhCCCeEEEEeccchhhhhhhccCCchhhhhhhccccchhh
Confidence 77754431 1456677788777654443 56667667665544433
No 22
>PLN02892 isocitrate lyase
Probab=98.22 E-value=8.7e-06 Score=83.11 Aligned_cols=167 Identities=15% Similarity=0.157 Sum_probs=104.0
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhh-----hccCCCCccCCHHHHHHHHHHHHcc--------
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV-----VHGHDTTLPITLEEMLVHCRAVARG-------- 150 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~-----~lG~~dt~~vtl~eml~h~raV~Ra-------- 150 (293)
|++..++|.++--++|.|..-+.-.-+ |.++|.|+.+..+. --=+||-..-+++-+-..++.|-++
T Consensus 70 L~~~~~~~~~~~t~Galdp~Q~~Qm~k-~l~~iYvSGWq~ss~a~t~~e~~PD~adYP~~tVP~~V~ri~~Aq~~hDr~q 148 (570)
T PLN02892 70 LKTHQANGTASRTFGALDPVQVAQMAK-HLDTIYVSGWQCSSTATSTNEPGPDLADYPMDTVPNKVEHLFFAQLYHDRKQ 148 (570)
T ss_pred HHHhhccCCceeeccCCcHHHHHHHHc-cCceEEechhhhcCccccCCCCCCCcccCccccccHHHHHHHHHHHHHHHHH
Confidence 444445678999999999999987666 99999876533322 2237888888877665555554332
Q ss_pred --------------cC----CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEE
Q 022677 151 --------------AK----RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVM 212 (293)
Q Consensus 151 --------------~~----~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~ 212 (293)
++ ..+|++|++- ||+. ..++++++.+++ ++||.||+|||+.. .+ +.|
T Consensus 149 ~~~r~~~~~~~r~~~~~~Dyl~PIiADaEt-GyG~-~~~~~~~vk~~i-eaGAaGIhIEDQ~~--~~----------KkC 213 (570)
T PLN02892 149 REARMSMSREERARTPYVDYLKPIIADGDT-GFGG-TTATVKLCKLFV-ERGAAGVHIEDQSS--VT----------KKC 213 (570)
T ss_pred HHHHhccCHHHhcCCCccccccceeeecCC-CCCc-cHHHHHHHHHHH-HcCCeEEEEECCCC--cc----------ccc
Confidence 22 1238899997 5964 455669988887 79999999999862 23 579
Q ss_pred EeccccceeeeecCCcccccCCHHHHHHHHHHHHHH-HHcCCcEEEecCCCHHHHHHHHHhcC---CCEE
Q 022677 213 GHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALAL-QEVGCFSVVLECVPPPVAAAATSALQ---IPTI 278 (293)
Q Consensus 213 GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~-eeAGA~~IvlE~vp~e~a~~It~~l~---iPtI 278 (293)
||.+ |-.+. +.++..+-|+.++.- ...|.+.+++==....-+..|++.++ -|-|
T Consensus 214 Gh~~----------gk~Lv--p~~e~v~RI~AAR~aad~~G~d~vI~ARTDA~~a~Lits~iD~RDh~FI 271 (570)
T PLN02892 214 GHMG----------GKVLV--ATSEHINRLVAARLQFDVMGVETVLVARTDAVAATLIQSNIDARDHQFI 271 (570)
T ss_pred CCCC----------CCccc--CHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhcccchhhhccccccce
Confidence 9965 11011 122332333333332 34577755544444555566666554 4544
No 23
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=97.67 E-value=0.0044 Score=59.20 Aligned_cols=152 Identities=18% Similarity=0.174 Sum_probs=99.4
Q ss_pred HHHhhhCCCcEE---EEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC
Q 022677 84 LRQKHKNGEPIT---MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (293)
Q Consensus 84 Lr~l~~~g~pi~---m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm 160 (293)
|.+++.-.-||+ |..+-|.--|..+-++|.=-++- ....+.+++-...+.++..++.| +-+++
T Consensus 4 l~~~lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~-------------~~~~~~~~l~~~i~~~~~~t~~p-fgvn~ 69 (307)
T TIGR03151 4 LCDLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIG-------------AGNAPPDVVRKEIRKVKELTDKP-FGVNI 69 (307)
T ss_pred hhHHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceec-------------cccCCHHHHHHHHHHHHHhcCCC-cEEee
Confidence 445555456776 44566776677677776321111 11235777777777777666667 45555
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHH
Q 022677 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (293)
Q Consensus 161 pfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e 240 (293)
.+-. ...++. ++++.+.|+..|-+-.|.. .+.++++.+.|++++..++ +
T Consensus 70 ~~~~--~~~~~~----~~~~~~~~v~~v~~~~g~p--~~~i~~lk~~g~~v~~~v~-----------------s------ 118 (307)
T TIGR03151 70 MLLS--PFVDEL----VDLVIEEKVPVVTTGAGNP--GKYIPRLKENGVKVIPVVA-----------------S------ 118 (307)
T ss_pred ecCC--CCHHHH----HHHHHhCCCCEEEEcCCCc--HHHHHHHHHcCCEEEEEcC-----------------C------
Confidence 4421 122333 3444478999998876653 4578999999999985432 1
Q ss_pred HHHHHHHHHHcCCcEEEecCC---------C-HHHHHHHHHhcCCCEEEeC
Q 022677 241 VVETALALQEVGCFSVVLECV---------P-PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 241 ~l~rA~a~eeAGA~~IvlE~v---------p-~e~a~~It~~l~iPtIGIG 281 (293)
++.++..+++|||.|++++. + -++..++.+.+++|+|+-|
T Consensus 119 -~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaG 168 (307)
T TIGR03151 119 -VALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAG 168 (307)
T ss_pred -HHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEEC
Confidence 34578888999999999653 2 4788999999999998654
No 24
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.64 E-value=0.0058 Score=57.51 Aligned_cols=166 Identities=19% Similarity=0.295 Sum_probs=104.1
Q ss_pred CcEEEEec-CC--HHHHHHHHHcCCcEEEECchhhhhhccCCC---------------CccCCHHHHHHHHHHHHcccCC
Q 022677 92 EPITMVTA-YD--YPSAVHLDSAGIDICLVGDSAAMVVHGHDT---------------TLPITLEEMLVHCRAVARGAKR 153 (293)
Q Consensus 92 ~pi~m~ta-yD--~~SAriae~AG~DailvGdSla~~~lG~~d---------------t~~vtl~eml~h~raV~Ra~~~ 153 (293)
.||.+-.. +| .-..+.++++|+.++.+|.-..--..|+|. -.....++.+.+.+...+..+.
T Consensus 13 nPv~~aag~~~~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~ 92 (301)
T PRK07259 13 NPVMPASGTFGFGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDT 92 (301)
T ss_pred CCcEECCcCCCCCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccCC
Confidence 35554432 44 345666678888888887533223344443 1123467777766665554566
Q ss_pred CeEEeeCCCCCCCCCHHHHHHHHHHHHHHhC-CCEEEe-------CC-CC------CCcHHHHHHHHHc-CCcEEEeccc
Q 022677 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGG-MDAIKL-------EG-GS------PSRITAARGIVEA-GIAVMGHVGL 217 (293)
Q Consensus 154 p~vvaDmpfGsy~~s~e~av~~A~rl~keaG-a~gVki-------Eg-g~------~~~~~~ikal~~~-GIpV~GHiGL 217 (293)
| +++.+- ++ ++++-.+.|.++ +++| +|+|-| .+ |. +...++++++.++ .+|+.-.+.
T Consensus 93 p-~i~si~--g~--~~~~~~~~a~~~-~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~- 165 (301)
T PRK07259 93 P-IIANVA--GS--TEEEYAEVAEKL-SKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT- 165 (301)
T ss_pred c-EEEEec--cC--CHHHHHHHHHHH-hccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC-
Confidence 7 666662 23 678888887775 5788 999977 43 21 1234566767665 677775432
Q ss_pred cceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecC----------------------------CC--HHHHH
Q 022677 218 TPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC----------------------------VP--PPVAA 267 (293)
Q Consensus 218 tPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~----------------------------vp--~e~a~ 267 (293)
| +. .++.+-++.++++|+|+|.+-. .| -+.++
T Consensus 166 -~--------------~~---~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~ 227 (301)
T PRK07259 166 -P--------------NV---TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVY 227 (301)
T ss_pred -C--------------Cc---hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHH
Confidence 1 11 2567788899999999987511 01 26778
Q ss_pred HHHHhcCCCEEEeCC
Q 022677 268 AATSALQIPTIGIGA 282 (293)
Q Consensus 268 ~It~~l~iPtIGIGa 282 (293)
.|.+.+++|+|+.|.
T Consensus 228 ~i~~~~~ipvi~~GG 242 (301)
T PRK07259 228 QVYQAVDIPIIGMGG 242 (301)
T ss_pred HHHHhCCCCEEEECC
Confidence 899999999998775
No 25
>PRK08185 hypothetical protein; Provisional
Probab=97.60 E-value=0.0063 Score=57.94 Aligned_cols=179 Identities=13% Similarity=0.132 Sum_probs=116.1
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEee
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAr----iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaD 159 (293)
|++-.+++--+-..|+||..+++ .||+.+.++|+-.+.......| . ++...++.+++..+.| |+.-
T Consensus 5 L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~--------~-~~~~~~~~~a~~~~vP-V~lH 74 (283)
T PRK08185 5 LKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLG--------D-NFFAYVRERAKRSPVP-FVIH 74 (283)
T ss_pred HHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhcc--------H-HHHHHHHHHHHHCCCC-EEEE
Confidence 55555677788999999999987 4678899999843222211122 2 3677778888888888 7777
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeeecCCccccc
Q 022677 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (293)
Q Consensus 160 mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqG 232 (293)
+.-| . +.+.. .+.+ +.|.++|.+-+... ....+++.....||+|.+=+|.++..+. +...+
T Consensus 75 LDHg-~--~~e~i----~~ai-~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~----~~~~~ 142 (283)
T PRK08185 75 LDHG-A--TIEDV----MRAI-RCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGT----SIEGG 142 (283)
T ss_pred CCCC-C--CHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccc----ccccc
Confidence 7764 2 44544 3456 58999999976531 1224444446789999988886553321 11112
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCcEEEe---------c-----CCCHHHHHHHHHhcCCCEEEeCCCCC
Q 022677 233 KNVTSAVKVVETALALQEV-GCFSVVL---------E-----CVPPPVAAAATSALQIPTIGIGAGPF 285 (293)
Q Consensus 233 rt~~~a~e~l~rA~a~eeA-GA~~Ivl---------E-----~vp~e~a~~It~~l~iPtIGIGaG~~ 285 (293)
.+ +..-.-.+.|+.+.+. |+|.+-+ + .+.-+..+.|.+.+++|+.-+|+-.-
T Consensus 143 ~~-~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~ 209 (283)
T PRK08185 143 VS-EIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSAN 209 (283)
T ss_pred cc-cccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCC
Confidence 11 1111123455666665 9999999 2 23358999999999999998886543
No 26
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.59 E-value=0.0015 Score=59.24 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=93.1
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
.|+.+.+.|+|.+.+=|--.+ .-|+. +....++.+++..+.|+.+ + |+. .|.+++ .+++ ++
T Consensus 37 ~a~~~~~~G~~~l~i~dl~~~-~~~~~--------~~~~~i~~i~~~~~~~l~v-~---GGi-~~~~~~----~~~~-~~ 97 (241)
T PRK13585 37 VAKRWVDAGAETLHLVDLDGA-FEGER--------KNAEAIEKIIEAVGVPVQL-G---GGI-RSAEDA----ASLL-DL 97 (241)
T ss_pred HHHHHHHcCCCEEEEEechhh-hcCCc--------ccHHHHHHHHHHcCCcEEE-c---CCc-CCHHHH----HHHH-Hc
Confidence 466677889999976553221 11222 2255567788888888555 4 566 467766 4556 68
Q ss_pred CCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC-
Q 022677 184 GMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP- 262 (293)
Q Consensus 184 Ga~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp- 262 (293)
||+.|.+-......++.++.+.+. +|+=.+.|--....+...+.|...+.....++.++.++++||+.|++-.+.
T Consensus 98 Ga~~v~iGs~~~~~~~~~~~i~~~----~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~ 173 (241)
T PRK13585 98 GVDRVILGTAAVENPEIVRELSEE----FGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDV 173 (241)
T ss_pred CCCEEEEChHHhhChHHHHHHHHH----hCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecC
Confidence 999998843221123445556553 222112221111111122334332222366788899999999999974431
Q ss_pred --------HHHHHHHHHhcCCCEEEeCC
Q 022677 263 --------PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 263 --------~e~a~~It~~l~iPtIGIGa 282 (293)
-+.++.+++.+++|++..|.
T Consensus 174 ~g~~~g~~~~~i~~i~~~~~iPvia~GG 201 (241)
T PRK13585 174 EGLLEGVNTEPVKELVDSVDIPVIASGG 201 (241)
T ss_pred CCCcCCCCHHHHHHHHHhCCCCEEEeCC
Confidence 37889999999999998774
No 27
>PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4.1.3.1 from EC) [, ] is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. A cysteine, a histidine and a glutamate or aspartate have been found to be important for the enzyme's catalytic activity. Only one cysteine residue is conserved between the sequences of the fungal, plant and bacterial enzymes; it is located in the middle of a conserved hexapeptide. Other enzymes also belong to this family including carboxyvinyl-carboxyphosphonate phosphorylmutase (2.7.8.23 from EC) which catalyses the conversion of 1-carboxyvinyl carboxyphosphonate to 3-(hydrohydroxyphosphoryl) pyruvate carbon dioxide, and phosphoenolpyruvate mutase (5.4.2.9 from EC), which is involved in the biosynthesis of phosphinothricin tripeptide antiobiotics. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1IGW_D 3P0X_B 3EOL_B 3E5B_B 3OQ8_D 3LG3_A 3I4E_D 1F8I_B 1F8M_D 1F61_A ....
Probab=97.50 E-value=0.00062 Score=69.31 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=70.9
Q ss_pred CCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhh----h-ccCCCCccCCHHHHHHHHHHHHccc----------C--
Q 022677 90 NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV----V-HGHDTTLPITLEEMLVHCRAVARGA----------K-- 152 (293)
Q Consensus 90 ~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~----~-lG~~dt~~vtl~eml~h~raV~Ra~----------~-- 152 (293)
++.+....++.|..-..... +|.++|.++....+. + -=|||-..-+++-+-..+++|-++. .
T Consensus 56 ~~~~~~t~g~~~p~~~~q~~-~~l~~iYvSGWq~ss~~s~~~e~~PD~s~YP~~tVP~~V~ri~~aq~~~D~~q~~~~~~ 134 (526)
T PF00463_consen 56 NGYVSHTGGATDPQQVQQMA-KGLEAIYVSGWQCSSDASTSNEPYPDQSDYPYDTVPNKVERIFNAQLRHDRKQWEERLS 134 (526)
T ss_dssp SSSEEEEBBSSHHHHHHHHH-CT-SSEEE-HHHHHHHS-TT-S--SSSS-S-TTHHHHHHHHHHHHHHHHHHHHHHCTCS
T ss_pred cCCcceecccccHHHHHHHH-hcCCeEEeeceeeecccccCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHhccc
Confidence 46788888999988877665 699999876544331 1 2278888888887766666654431 0
Q ss_pred --------------CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEecc--
Q 022677 153 --------------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG-- 216 (293)
Q Consensus 153 --------------~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiG-- 216 (293)
..+||+|-+.| |+ .+..+.+-+..++ |+||.||+||||.. |-+.|||.|
T Consensus 135 ~~~~~r~~~~~~Dyl~PIIADad~G-fG-G~~~v~kL~K~fi-EaGaAgiH~EDQ~~------------~~KKCGH~~GK 199 (526)
T PF00463_consen 135 MTKEERAKTPYIDYLRPIIADADAG-FG-GLTAVMKLTKLFI-EAGAAGIHFEDQLS------------GEKKCGHMGGK 199 (526)
T ss_dssp TTSTTHTTS--S-SS--EEEE-TTT-SS-SHHHHHHHHHHHH-HHT-SEEEEESB-G------------GG-B-STTSBE
T ss_pred ccchhhcccCcccceeeeeeccccC-CC-CHHHHHHHHHHHH-hcCCceechhhccc------------cccceeccCCc
Confidence 12478776663 63 6778888877777 79999999999862 337999986
Q ss_pred -ccce
Q 022677 217 -LTPQ 220 (293)
Q Consensus 217 -LtPq 220 (293)
|+|-
T Consensus 200 VlVPt 204 (526)
T PF00463_consen 200 VLVPT 204 (526)
T ss_dssp EE--H
T ss_pred EEecH
Confidence 6664
No 28
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.49 E-value=0.013 Score=54.88 Aligned_cols=122 Identities=27% Similarity=0.429 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC-------------C-CCcHHHH
Q 022677 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG-------------S-PSRITAA 201 (293)
Q Consensus 136 tl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg-------------~-~~~~~~i 201 (293)
.+++++.+.+...+..+.| +++.+- | .++++..+.|.++ +++|+|+|-|--+ . +...+++
T Consensus 73 g~~~~~~~~~~~~~~~~~p-~ivsi~-g---~~~~~~~~~a~~~-~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv 146 (296)
T cd04740 73 GVEAFLEELLPWLREFGTP-VIASIA-G---STVEEFVEVAEKL-ADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIV 146 (296)
T ss_pred CHHHHHHHHHHHhhcCCCc-EEEEEe-c---CCHHHHHHHHHHH-HHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHH
Confidence 4577777777765555667 555553 2 3577777776665 5789999977211 1 1234567
Q ss_pred HHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecC--------------------
Q 022677 202 RGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC-------------------- 260 (293)
Q Consensus 202 kal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~-------------------- 260 (293)
+++.++ ++|+.--+ .| +. .+..+-++.++++|||+|.+-.
T Consensus 147 ~~vr~~~~~Pv~vKl--~~--------------~~---~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~ 207 (296)
T cd04740 147 KAVKKATDVPVIVKL--TP--------------NV---TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVT 207 (296)
T ss_pred HHHHhccCCCEEEEe--CC--------------Cc---hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCc
Confidence 777776 78887432 22 11 2567778899999999987620
Q ss_pred --C------C--HHHHHHHHHhcCCCEEEeCC
Q 022677 261 --V------P--PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 261 --v------p--~e~a~~It~~l~iPtIGIGa 282 (293)
. | -+.++.+.+.+++|+|+.|.
T Consensus 208 gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GG 239 (296)
T cd04740 208 GGLSGPAIKPIALRMVYQVYKAVEIPIIGVGG 239 (296)
T ss_pred ceecCcccchHHHHHHHHHHHhcCCCEEEECC
Confidence 0 1 16778888999999998764
No 29
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.49 E-value=0.024 Score=53.77 Aligned_cols=176 Identities=11% Similarity=0.139 Sum_probs=110.3
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCeEEe
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVG 158 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAr----iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~-~p~vva 158 (293)
|+..++++--+-..|+||..+++ .+|+.+.++|+--+....-..| .++.+...++.+++..+ .| |+.
T Consensus 8 l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~vp-v~l 79 (282)
T TIGR01859 8 LQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMG-------GYKMAVAMVKTLIERMSIVP-VAL 79 (282)
T ss_pred HHHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccC-------cHHHHHHHHHHHHHHCCCCe-EEE
Confidence 44455667778899999999986 4677799999843221111111 15778888888888887 78 666
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCC-------cHHHHHHHHHcCCcEEEeccccceeeeecCCcccc
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-------RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ 231 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~-------~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vq 231 (293)
-+.-|. +.+.. .+.+ ++|.+.|.+-+.... ...+++.....|++|.+=+|-.+..+.. ..
T Consensus 80 hlDH~~---~~e~i----~~ai-~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~-----~~ 146 (282)
T TIGR01859 80 HLDHGS---SYESC----IKAI-KAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDG-----VD 146 (282)
T ss_pred ECCCCC---CHHHH----HHHH-HcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccc-----cc
Confidence 665442 33322 3456 589999999765321 2233444457899998777754422111 12
Q ss_pred cCCHHHHHHHHHHHHHHHH-cCCcEEEe------------cCCCHHHHHHHHHhcCCCEEEeCC
Q 022677 232 GKNVTSAVKVVETALALQE-VGCFSVVL------------ECVPPPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 232 Grt~~~a~e~l~rA~a~ee-AGA~~Ivl------------E~vp~e~a~~It~~l~iPtIGIGa 282 (293)
| .. ..-.-.++|+.+.+ .|+|.|.+ +.+.-+.++.|.+.+++|+..+|+
T Consensus 147 g-~~-~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGg 208 (282)
T TIGR01859 147 E-KE-AELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGA 208 (282)
T ss_pred c-cc-cccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECC
Confidence 2 00 00012334444444 79999885 223458899999999999999984
No 30
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.45 E-value=0.016 Score=53.83 Aligned_cols=125 Identities=24% Similarity=0.344 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHcc-cCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------------CcHHH
Q 022677 135 ITLEEMLVHCRAVARG-AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------------SRITA 200 (293)
Q Consensus 135 vtl~eml~h~raV~Ra-~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------------~~~~~ 200 (293)
...++.+...+...+. .+.| +++.+- | .++++..+.+.++. +.|+++|-|--+.. ...++
T Consensus 80 ~g~~~~~~~i~~~~~~~~~~p-vi~si~-g---~~~~~~~~~a~~~~-~~G~d~ielN~~cP~~~~~~~~~~~~~~~~ei 153 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQP-LIASVG-G---SSKEDYVELARKIE-RAGAKALELNLSCPNVGGGRQLGQDPEAVANL 153 (289)
T ss_pred cCHHHHHHHHHHHHhccCCCe-EEEEec-c---CCHHHHHHHHHHHH-HhCCCEEEEEcCCCCCCCCcccccCHHHHHHH
Confidence 3577777777776655 4566 555553 2 36788888776665 68999998753321 12345
Q ss_pred HHHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC------------------
Q 022677 201 ARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV------------------ 261 (293)
Q Consensus 201 ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v------------------ 261 (293)
++++.+. ++|+.--++ | +- +.+++.+.+++++++|+|.|.+..-
T Consensus 154 v~~vr~~~~~pv~vKl~--~------------~~---~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~ 216 (289)
T cd02810 154 LKAVKAAVDIPLLVKLS--P------------YF---DLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRG 216 (289)
T ss_pred HHHHHHccCCCEEEEeC--C------------CC---CHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCC
Confidence 6666654 677763322 1 11 2346788888999999999998521
Q ss_pred ----------C--HHHHHHHHHhc--CCCEEEeCC
Q 022677 262 ----------P--PPVAAAATSAL--QIPTIGIGA 282 (293)
Q Consensus 262 ----------p--~e~a~~It~~l--~iPtIGIGa 282 (293)
| -+.++.+.+.+ ++|+|+.|.
T Consensus 217 ~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GG 251 (289)
T cd02810 217 TGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGG 251 (289)
T ss_pred CCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECC
Confidence 0 24578888888 899987663
No 31
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.38 E-value=0.023 Score=48.57 Aligned_cols=81 Identities=26% Similarity=0.188 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc--CCCeEEeeCCCCCCCCCHHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA--KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (293)
Q Consensus 103 ~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~--~~p~vvaDmpfGsy~~s~e~av~~A~rl~ 180 (293)
-.++.+.++|+|++++.-.... .++. ..+++..|.++|++.+ +.|+++-+.|... .++++..+. .++.
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~~~----~~~~---~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~--~~~~~~~~~-~~~~ 138 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINIGS----LKEG---DWEEVLEEIAAVVEAADGGLPLKVILETRGL--KTADEIAKA-ARIA 138 (201)
T ss_pred HHHHHHHHcCCCEEEEeccHHH----HhCC---CHHHHHHHHHHHHHHhcCCceEEEEEECCCC--CCHHHHHHH-HHHH
Confidence 4578888999999987432211 1111 4789999999999984 7898888889754 356665544 4555
Q ss_pred HHhCCCEEEeCCC
Q 022677 181 KEGGMDAIKLEGG 193 (293)
Q Consensus 181 keaGa~gVkiEgg 193 (293)
++.|+++||...+
T Consensus 139 ~~~g~~~iK~~~~ 151 (201)
T cd00945 139 AEAGADFIKTSTG 151 (201)
T ss_pred HHhCCCEEEeCCC
Confidence 6789999999876
No 32
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.37 E-value=0.004 Score=55.88 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=88.3
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
.|+..++.|+|.+.+=|--+. .-|.+. . ....+.+++.++.| +.++ |+. .+++++ .+++ +.
T Consensus 34 ~a~~~~~~g~d~l~v~dl~~~-~~~~~~----~----~~~i~~i~~~~~~p-v~~~---GgI-~~~e~~----~~~~-~~ 94 (234)
T cd04732 34 VAKKWEEAGAKWLHVVDLDGA-KGGEPV----N----LELIEEIVKAVGIP-VQVG---GGI-RSLEDI----ERLL-DL 94 (234)
T ss_pred HHHHHHHcCCCEEEEECCCcc-ccCCCC----C----HHHHHHHHHhcCCC-EEEe---CCc-CCHHHH----HHHH-Hc
Confidence 567778899999976443221 111111 1 44556677777788 4444 455 467776 4667 58
Q ss_pred CCCEEEeCCCCCCcHHHHHHHHHc-CC-cEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC
Q 022677 184 GMDAIKLEGGSPSRITAARGIVEA-GI-AVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV 261 (293)
Q Consensus 184 Ga~gVkiEgg~~~~~~~ikal~~~-GI-pV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v 261 (293)
||+.|-+=.....-+..++.+.+. |- ++.--+.+ + .+.+...|-......+.++.++.++++||+.+.+-.+
T Consensus 95 Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~ 168 (234)
T cd04732 95 GVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDA-K-----DGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDI 168 (234)
T ss_pred CCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEe-e-----CCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEee
Confidence 999998754332223344444442 22 22222211 0 1111111100111235677889999999999987655
Q ss_pred C---------HHHHHHHHHhcCCCEEEeC
Q 022677 262 P---------PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 262 p---------~e~a~~It~~l~iPtIGIG 281 (293)
. -+.++.+.+.+++|++..|
T Consensus 169 ~~~g~~~g~~~~~i~~i~~~~~ipvi~~G 197 (234)
T cd04732 169 SRDGTLSGPNFELYKELAAATGIPVIASG 197 (234)
T ss_pred cCCCccCCCCHHHHHHHHHhcCCCEEEec
Confidence 2 4889999999999999655
No 33
>PRK06801 hypothetical protein; Provisional
Probab=97.32 E-value=0.027 Score=53.72 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=117.4
Q ss_pred CCHHHHHH-hhhCCCcEEEEecCCHHHHHH----HHHcCCcEEE-ECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 022677 79 VTLTHLRQ-KHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (293)
Q Consensus 79 ~t~~~Lr~-l~~~g~pi~m~tayD~~SAri----ae~AG~Dail-vGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~ 152 (293)
++++++.+ -.+++--+-..|+||+.+++. +|+.+.++|+ ++.+.. ....++.+...++..++..+
T Consensus 4 v~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~---------~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK06801 4 ISLANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHF---------KYISLESLVEAVKFEAARHD 74 (286)
T ss_pred CcHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchh---------hcCCHHHHHHHHHHHHHHCC
Confidence 44444443 445666788899999999874 6777999997 433221 12568889999999999998
Q ss_pred CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeeec
Q 022677 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISVL 225 (293)
Q Consensus 153 ~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~l 225 (293)
.| |+.-+.-| . +.+. + .+.+ ++|+++|.+-+... ....+++.....|++|.+=+|-+.+.+...
T Consensus 75 vp-V~lHlDH~-~--~~e~-i---~~Ai-~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v 145 (286)
T PRK06801 75 IP-VVLNLDHG-L--HFEA-V---VRAL-RLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGA 145 (286)
T ss_pred CC-EEEECCCC-C--CHHH-H---HHHH-HhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCc
Confidence 99 77777764 2 3333 3 3456 58999999955421 122344545688999987777555543210
Q ss_pred CCcccccCCHHHHHHHHHHHHHHH-HcCCcEEEe------------cCCCHHHHHHHHHhcCCCEEEeCCC
Q 022677 226 GGFRPQGKNVTSAVKVVETALALQ-EVGCFSVVL------------ECVPPPVAAAATSALQIPTIGIGAG 283 (293)
Q Consensus 226 gGf~vqGrt~~~a~e~l~rA~a~e-eAGA~~Ivl------------E~vp~e~a~~It~~l~iPtIGIGaG 283 (293)
..+........-.+.|+.+. +.|+|.|=+ +.+.-+..+.|.+.+++|+.-+|+.
T Consensus 146 ----~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGS 212 (286)
T PRK06801 146 ----LYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGS 212 (286)
T ss_pred ----ccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCC
Confidence 01110001111224444444 689999988 2244588999999999999888763
No 34
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.31 E-value=0.055 Score=51.42 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=113.7
Q ss_pred CCHHHHHH-hhhCCCcEEEEecCCHHHHH----HHHHcCCcEEE-ECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 022677 79 VTLTHLRQ-KHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (293)
Q Consensus 79 ~t~~~Lr~-l~~~g~pi~m~tayD~~SAr----iae~AG~Dail-vGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~ 152 (293)
+|++++.+ -++++--+-..|+||..+++ .+|+.+.++|+ +..+. .-| ..++.+...++..++..+
T Consensus 4 v~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~----~~~-----~~~~~~~~~~~~~a~~~~ 74 (281)
T PRK06806 4 VQMKELLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVR----LNH-----SPLHLIGPLMVAAAKQAK 74 (281)
T ss_pred CcHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcch----hcc-----CChHHHHHHHHHHHHHCC
Confidence 44555443 44566678899999999986 46778999998 43221 112 345555556667777778
Q ss_pred CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeeec
Q 022677 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISVL 225 (293)
Q Consensus 153 ~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~l 225 (293)
.| |..-+.-| . +.+.+ .+.+ ++|++.|.+-+... ....+++.....|+++-+-+|-.+|.+..
T Consensus 75 vp-v~lHlDH~-~--~~e~i----~~Al-~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~- 144 (281)
T PRK06806 75 VP-VAVHFDHG-M--TFEKI----KEAL-EIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDG- 144 (281)
T ss_pred CC-EEEECCCC-C--CHHHH----HHHH-HcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCC-
Confidence 88 77777764 3 44433 4566 58999999977532 12344455568899998555433343321
Q ss_pred CCcccccCCHHHHHHHHHHHHHHH-HcCCcEEEe----------c--CCCHHHHHHHHHhcCCCEEEeCCC
Q 022677 226 GGFRPQGKNVTSAVKVVETALALQ-EVGCFSVVL----------E--CVPPPVAAAATSALQIPTIGIGAG 283 (293)
Q Consensus 226 gGf~vqGrt~~~a~e~l~rA~a~e-eAGA~~Ivl----------E--~vp~e~a~~It~~l~iPtIGIGaG 283 (293)
-...|.+.. -.+.|+.+. +.|+|.|-+ . .+.-+..+.|.+.+++|+..||+.
T Consensus 145 --~~~~g~s~t----~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~S 209 (281)
T PRK06806 145 --SEDIEMLLT----STTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGS 209 (281)
T ss_pred --cccccceeC----CHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCC
Confidence 112342211 133444443 469999988 2 233588999999999999999943
No 35
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.21 E-value=0.031 Score=47.75 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=88.7
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE-eeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv-aDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
++.+-+.|+|.+.+.- +++..++....+.+.|+++ ++-+. ++ ...+++++.+.+.. +.
T Consensus 19 ~~~~~~~gv~gi~~~g------------------~~i~~~~~~~~~~~~~v~~~v~~~~-~~-~~~~~~~~~a~~a~-~~ 77 (201)
T cd00945 19 CDEAIEYGFAAVCVNP------------------GYVRLAADALAGSDVPVIVVVGFPT-GL-TTTEVKVAEVEEAI-DL 77 (201)
T ss_pred HHHHHHhCCcEEEECH------------------HHHHHHHHHhCCCCCeEEEEecCCC-CC-CcHHHHHHHHHHHH-Hc
Confidence 3445568999998752 6666666555543456443 33333 23 34788888887766 79
Q ss_pred CCCEEEeCCCC--------CCcHHHHHHHHHc---CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcC
Q 022677 184 GMDAIKLEGGS--------PSRITAARGIVEA---GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVG 252 (293)
Q Consensus 184 Ga~gVkiEgg~--------~~~~~~ikal~~~---GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAG 252 (293)
||++|.+.... +...+.++++.++ ++|++-. ..|... .+ .+++.+.++.+++.|
T Consensus 78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy--~~p~~~----------~~---~~~~~~~~~~~~~~g 142 (201)
T cd00945 78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVI--LETRGL----------KT---ADEIAKAARIAAEAG 142 (201)
T ss_pred CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEE--EECCCC----------CC---HHHHHHHHHHHHHhC
Confidence 99999986421 1123445566665 8999865 223221 12 345566677778899
Q ss_pred CcEEEecCC------CHHHHHHHHHhc--CCCEEEeCC
Q 022677 253 CFSVVLECV------PPPVAAAATSAL--QIPTIGIGA 282 (293)
Q Consensus 253 A~~IvlE~v------p~e~a~~It~~l--~iPtIGIGa 282 (293)
+++|=.-.- ..+..+.+.+.+ ++|++..|.
T Consensus 143 ~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg 180 (201)
T cd00945 143 ADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGG 180 (201)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECC
Confidence 999976543 346667787777 568776654
No 36
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.20 E-value=0.032 Score=49.97 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=91.6
Q ss_pred EEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHH
Q 022677 96 MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDT 175 (293)
Q Consensus 96 m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~ 175 (293)
|.+.-|...++.+.++|. +|+-++..++.++.....+.+++..+.| +.+.+=+..++...++-+
T Consensus 10 m~g~~~~~~~~~~~~~G~-------------ig~i~~~~~~~~~~~~~~~~i~~~~~~~-~~v~~i~~~~~~~~~~~~-- 73 (236)
T cd04730 10 MAGVSTPELAAAVSNAGG-------------LGFIGAGYLTPEALRAEIRKIRALTDKP-FGVNLLVPSSNPDFEALL-- 73 (236)
T ss_pred CCCCCCHHHHHHHHhCCC-------------ccccCCCCCCHHHHHHHHHHHHHhcCCC-eEEeEecCCCCcCHHHHH--
Confidence 334458888888888772 2333556678888888888887644344 223322211101223332
Q ss_pred HHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcE
Q 022677 176 AVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFS 255 (293)
Q Consensus 176 A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~ 255 (293)
+..++.|+++|.+-++. ....++.+.+.++++..-+ .+ .+++++++++|+|.
T Consensus 74 --~~~~~~g~d~v~l~~~~--~~~~~~~~~~~~i~~i~~v-----------------~~-------~~~~~~~~~~gad~ 125 (236)
T cd04730 74 --EVALEEGVPVVSFSFGP--PAEVVERLKAAGIKVIPTV-----------------TS-------VEEARKAEAAGADA 125 (236)
T ss_pred --HHHHhCCCCEEEEcCCC--CHHHHHHHHHcCCEEEEeC-----------------CC-------HHHHHHHHHcCCCE
Confidence 34557899999997763 4667788888888775311 11 14567788899999
Q ss_pred EEecCC-----------C-HHHHHHHHHhcCCCEEEeCC
Q 022677 256 VVLECV-----------P-PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 256 IvlE~v-----------p-~e~a~~It~~l~iPtIGIGa 282 (293)
|.+.+. + .+.++.+.+.+++|++..|.
T Consensus 126 i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GG 164 (236)
T cd04730 126 LVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGG 164 (236)
T ss_pred EEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECC
Confidence 998652 2 46788888888999997664
No 37
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=97.13 E-value=0.0036 Score=59.19 Aligned_cols=100 Identities=25% Similarity=0.303 Sum_probs=61.5
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchh---------hhhhccCCCCccCCHHHHHHHHHHHHccc
Q 022677 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSA---------AMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (293)
Q Consensus 81 ~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSl---------a~~~lG~~dt~~vtl~eml~h~raV~Ra~ 151 (293)
++.||++.++++||+-..+=-.+||+.+|+.|+|+|++=.|. -+..|-|-|.+.+.+|.- +.|.-.+
T Consensus 4 l~~l~~~i~~~~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~----~eiLp~v 79 (268)
T PF09370_consen 4 LDRLRAQIKAGKPIIGAGAGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMA----REILPVV 79 (268)
T ss_dssp HHHHHHHHHTT--EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHH----HHHGGG-
T ss_pred HHHHHHHHhCCCceEEEeeccchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHH----Hhhhhhc
Confidence 578999999999999999999999999999999999974332 223556777777766433 4444444
Q ss_pred C-CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 022677 152 K-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (293)
Q Consensus 152 ~-~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVk 189 (293)
+ .|++.+=...--| .+.++-++ -+++.|..||+
T Consensus 80 ~~tPViaGv~atDP~-~~~~~fl~----~lk~~Gf~GV~ 113 (268)
T PF09370_consen 80 KDTPVIAGVCATDPF-RDMDRFLD----ELKELGFSGVQ 113 (268)
T ss_dssp SSS-EEEEE-TT-TT---HHHHHH----HHHHHT-SEEE
T ss_pred cCCCEEEEecCcCCC-CcHHHHHH----HHHHhCCceEE
Confidence 3 4533322222223 45566644 45688999985
No 38
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.016 Score=55.34 Aligned_cols=137 Identities=20% Similarity=0.245 Sum_probs=94.9
Q ss_pred HHHHHHHHcCCcEEEECchhhhhhccC-CCCccCCHHHHHHHHHHHHcccC-CCeEE-eeCCCCCCCCCHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDSAAMVVHGH-DTTLPITLEEMLVHCRAVARGAK-RPLLV-GDLPFGTYESSTNQAVDTAVRI 179 (293)
Q Consensus 103 ~SAriae~AG~DailvGdSla~~~lG~-~dt~~vtl~eml~h~raV~Ra~~-~p~vv-aDmpfGsy~~s~e~av~~A~rl 179 (293)
-+.+.++++|+..|-+-|...----|| +....++.+||....++++.+.+ .+|++ +=+..-.-+ ..+++++-+...
T Consensus 97 rtV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~-~ld~AI~Ra~AY 175 (289)
T COG2513 97 RTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVE-GLDDAIERAQAY 175 (289)
T ss_pred HHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhc-cHHHHHHHHHHH
Confidence 467888999999999999998877787 78899999999999999999875 45555 555543332 378999998776
Q ss_pred HHHhCCCEEEeCCCCCCcHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 022677 180 LKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258 (293)
Q Consensus 180 ~keaGa~gVkiEgg~~~~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~Ivl 258 (293)
. |+|||+|..|+=.. .+.+++++++ -+|+..+ .+. .|+|. +-....|+++|...|..
T Consensus 176 ~-eAGAD~if~~al~~--~e~i~~f~~av~~pl~~N---------~t~----~g~tp------~~~~~~L~~~Gv~~V~~ 233 (289)
T COG2513 176 V-EAGADAIFPEALTD--LEEIRAFAEAVPVPLPAN---------ITE----FGKTP------LLTVAELAELGVKRVSY 233 (289)
T ss_pred H-HcCCcEEccccCCC--HHHHHHHHHhcCCCeeeE---------eec----cCCCC------CcCHHHHHhcCceEEEE
Confidence 5 89999999998542 4556666652 1223322 221 23321 11235667777777776
Q ss_pred cCCC
Q 022677 259 ECVP 262 (293)
Q Consensus 259 E~vp 262 (293)
...+
T Consensus 234 ~~~~ 237 (289)
T COG2513 234 GLTA 237 (289)
T ss_pred CcHH
Confidence 6655
No 39
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.12 E-value=0.011 Score=54.50 Aligned_cols=162 Identities=18% Similarity=0.228 Sum_probs=95.6
Q ss_pred CH-HHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHH
Q 022677 101 DY-PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (293)
Q Consensus 101 D~-~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl 179 (293)
|. -.|+..++.|+|.+.+-|--+.- .... .-+...+.+++.++.| |.++ |+. .|.+++ .++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~-----~~~~----~n~~~i~~i~~~~~~p-v~~~---GGi-~s~~d~----~~~ 92 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASS-----EGRT----TMIDVVERTAETVFIP-LTVG---GGI-KSIEDV----DKL 92 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCccc-----ccCh----hhHHHHHHHHHhcCCC-EEEE---CCC-CCHHHH----HHH
Confidence 54 57888889999999876754431 1111 2245557777777777 6666 566 477777 456
Q ss_pred HHHhCCCEEEeCCCCCCcHHHHHHHHHc-C-CcEEEeccccceeeeecCCccc--ccCCHHHHHHHHHHHHHHHHcCCcE
Q 022677 180 LKEGGMDAIKLEGGSPSRITAARGIVEA-G-IAVMGHVGLTPQAISVLGGFRP--QGKNVTSAVKVVETALALQEVGCFS 255 (293)
Q Consensus 180 ~keaGa~gVkiEgg~~~~~~~ikal~~~-G-IpV~GHiGLtPq~~~~lgGf~v--qGrt~~~a~e~l~rA~a~eeAGA~~ 255 (293)
+ +.|++.|-+=-....-+..++.+.+. | =.++-.+.+..-.....+.|++ .|=.++...+.++.++.++++|++.
T Consensus 93 ~-~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~ 171 (254)
T TIGR00735 93 L-RAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGE 171 (254)
T ss_pred H-HcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCE
Confidence 7 58999997722111224455555542 1 1122222111000000011222 2212223456788889999999999
Q ss_pred EEecCCC---------HHHHHHHHHhcCCCEEEeC
Q 022677 256 VVLECVP---------PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 256 IvlE~vp---------~e~a~~It~~l~iPtIGIG 281 (293)
|.+-.+. -+.++.+.+.+++|+|.-|
T Consensus 172 iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~G 206 (254)
T TIGR00735 172 ILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASG 206 (254)
T ss_pred EEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeC
Confidence 9985444 3889999999999999665
No 40
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.11 E-value=0.034 Score=52.24 Aligned_cols=154 Identities=19% Similarity=0.297 Sum_probs=95.0
Q ss_pred CHHHHHHHHHcCCcEEEECc------------------hhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCC
Q 022677 101 DYPSAVHLDSAGIDICLVGD------------------SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (293)
Q Consensus 101 D~~SAriae~AG~DailvGd------------------Sla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpf 162 (293)
+....+.+.+.|++++.++. .....+.|+++- ..+..+.+.+...+..+.| +++-+-
T Consensus 24 ~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~---g~~~~~~~~~~~~~~~~~p-l~~qi~- 98 (300)
T TIGR01037 24 GVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNP---GVEAFLEELKPVREEFPTP-LIASVY- 98 (300)
T ss_pred CHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCc---CHHHHHHHHHHHhccCCCc-EEEEee-
Confidence 33445556677888888742 122346677765 3566666666555555566 555552
Q ss_pred CCCCCCHHHHHHHHHHHHHHh--CCCEEEeCCCC--------------CCcHHHHHHHHHc-CCcEEEeccccceeeeec
Q 022677 163 GTYESSTNQAVDTAVRILKEG--GMDAIKLEGGS--------------PSRITAARGIVEA-GIAVMGHVGLTPQAISVL 225 (293)
Q Consensus 163 Gsy~~s~e~av~~A~rl~kea--Ga~gVkiEgg~--------------~~~~~~ikal~~~-GIpV~GHiGLtPq~~~~l 225 (293)
+.++++..+.|.++ +++ ++++|-|-=+. +...++++++.+. ++||.-=+.
T Consensus 99 ---g~~~~~~~~~a~~~-~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~--------- 165 (300)
T TIGR01037 99 ---GSSVEEFAEVAEKL-EKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLS--------- 165 (300)
T ss_pred ---cCCHHHHHHHHHHH-HhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECC---------
Confidence 24678887776655 454 48998885332 1234556666654 666652211
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec----C------------------C--C------HHHHHHHHHhcCC
Q 022677 226 GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE----C------------------V--P------PPVAAAATSALQI 275 (293)
Q Consensus 226 gGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE----~------------------v--p------~e~a~~It~~l~i 275 (293)
.+ .++..+-++.++++|+|+|.+- + + | -+.+..+.+.+++
T Consensus 166 -------~~---~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~i 235 (300)
T TIGR01037 166 -------PN---VTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDI 235 (300)
T ss_pred -------CC---hhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCC
Confidence 11 2356778889999999999872 1 0 1 1567788899999
Q ss_pred CEEEeCC
Q 022677 276 PTIGIGA 282 (293)
Q Consensus 276 PtIGIGa 282 (293)
|+|+-|.
T Consensus 236 pvi~~GG 242 (300)
T TIGR01037 236 PIIGVGG 242 (300)
T ss_pred CEEEECC
Confidence 9997664
No 41
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.10 E-value=0.018 Score=52.43 Aligned_cols=149 Identities=21% Similarity=0.247 Sum_probs=94.3
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
.|+.+.++|.|+|++|.|. .++.+.|..-++++++.++.|.+. .|. +. ++. . -
T Consensus 16 ia~~v~~~gtDaI~VGGS~-----------gvt~~~~~~~v~~ik~~~~lPvil--fp~-~~----~~i-------~--~ 68 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSL-----------GIVESNLDQTVKKIKKITNLPVIL--FPG-NV----NGL-------S--R 68 (205)
T ss_pred HHHHHHhcCCCEEEEcCcC-----------CCCHHHHHHHHHHHHhhcCCCEEE--ECC-Cc----ccc-------C--c
Confidence 3567788999999999652 358888888889999888899666 352 33 332 1 3
Q ss_pred CCCEEEeCC------CCCCcHHHHHHH---HHcCCcE--EEeccccceeeeecCCcccccCCH--HHHHHHHHHHHHHHH
Q 022677 184 GMDAIKLEG------GSPSRITAARGI---VEAGIAV--MGHVGLTPQAISVLGGFRPQGKNV--TSAVKVVETALALQE 250 (293)
Q Consensus 184 Ga~gVkiEg------g~~~~~~~ikal---~~~GIpV--~GHiGLtPq~~~~lgGf~vqGrt~--~~a~e~l~rA~a~ee 250 (293)
++|++-+-- -.|..-..++++ .+.|..+ .|.+-++|-.. -++.-..++. ...+++..-|.+-+.
T Consensus 69 ~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~---v~~v~~a~~ip~~~~e~~~~~a~aa~~ 145 (205)
T TIGR01769 69 YADAVFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGA---VGYVGKAREIPYNKPEIAAAYCLAAKY 145 (205)
T ss_pred CCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCc---eeeecCcccCCCCCHHHHHHHHHHHHH
Confidence 578776642 122211222323 3334222 23443444321 1111133332 345778888888899
Q ss_pred cCCcEEEecC-------CCHHHHHHHHHhcCCCEEEeCCC
Q 022677 251 VGCFSVVLEC-------VPPPVAAAATSALQIPTIGIGAG 283 (293)
Q Consensus 251 AGA~~IvlE~-------vp~e~a~~It~~l~iPtIGIGaG 283 (293)
.|+..|++|. ++.+++++|.+.+++|++ +|.|
T Consensus 146 ~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~-vGGG 184 (205)
T TIGR01769 146 FGMKWVYLEAGSGASYPVNPETISLVKKASGIPLI-VGGG 184 (205)
T ss_pred cCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEE-EeCC
Confidence 9999999997 557999999999999998 4444
No 42
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.06 E-value=0.018 Score=51.96 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCC--CC-------CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHH
Q 022677 168 STNQAVDTAVRILKEGGMDAIKLEGG--SP-------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSA 238 (293)
Q Consensus 168 s~e~av~~A~rl~keaGa~gVkiEgg--~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a 238 (293)
+.+.-+..+.+.+ +.||++|.+... .. ....+++...+.|+|++-..-+ .|....+..+
T Consensus 74 ~~~~~~~~v~~a~-~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~-------~g~~~~~~~~---- 141 (235)
T cd00958 74 NDKVLVASVEDAV-RLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP-------RGPAVKNEKD---- 141 (235)
T ss_pred CchhhhcCHHHHH-HCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEec-------cCCcccCccC----
Confidence 3444444455666 689999976542 11 1223333335689999853211 1111112222
Q ss_pred HHHHHH-HHHHHHcCCcEEEecCCC-HHHHHHHHHhcCCCEEEeCC
Q 022677 239 VKVVET-ALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 239 ~e~l~r-A~a~eeAGA~~IvlE~vp-~e~a~~It~~l~iPtIGIGa 282 (293)
.+.+++ ++...++|||.|.+.... .+..+.+++.+++|++.+|+
T Consensus 142 ~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~~~pvv~~GG 187 (235)
T cd00958 142 PDLIAYAARIGAELGADIVKTKYTGDAESFKEVVEGCPVPVVIAGG 187 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhcCCCCEEEeCC
Confidence 245555 888999999999997544 58889999999999988885
No 43
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=96.99 E-value=0.042 Score=49.61 Aligned_cols=159 Identities=18% Similarity=0.223 Sum_probs=91.8
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
.|+..++.|++-+.+-|--+. |.. .... +...+.+++.++.|+ .++ |+. .+.+++ .+++ +.
T Consensus 35 ~a~~~~~~g~~~i~i~dl~~~---~~~--~~~n----~~~~~~i~~~~~~pv-~~~---ggi-~~~~d~----~~~~-~~ 95 (232)
T TIGR03572 35 AARIYNAKGADELIVLDIDAS---KRG--REPL----FELISNLAEECFMPL-TVG---GGI-RSLEDA----KKLL-SL 95 (232)
T ss_pred HHHHHHHcCCCEEEEEeCCCc---ccC--CCCC----HHHHHHHHHhCCCCE-EEE---CCC-CCHHHH----HHHH-Hc
Confidence 467778899998876553321 111 1222 233466667778884 443 444 356666 3445 57
Q ss_pred CCCEEEeCCCCCCcHHHHHHHHHc-CCc-EEEeccccceeeeecCC-ccc--ccCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 022677 184 GMDAIKLEGGSPSRITAARGIVEA-GIA-VMGHVGLTPQAISVLGG-FRP--QGKNVTSAVKVVETALALQEVGCFSVVL 258 (293)
Q Consensus 184 Ga~gVkiEgg~~~~~~~ikal~~~-GIp-V~GHiGLtPq~~~~lgG-f~v--qGrt~~~a~e~l~rA~a~eeAGA~~Ivl 258 (293)
|++.|-+--....-+..++.+.+. |-+ ++-.+.+-... .++ +++ .|-++....+.++.++.++++|++.|++
T Consensus 96 G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i 172 (232)
T TIGR03572 96 GADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKEL---DGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILL 172 (232)
T ss_pred CCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCC---CCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 999987743222234556666553 222 22232211100 011 222 1222222335678889999999999998
Q ss_pred cCCCH---------HHHHHHHHhcCCCEEEeCCCC
Q 022677 259 ECVPP---------PVAAAATSALQIPTIGIGAGP 284 (293)
Q Consensus 259 E~vp~---------e~a~~It~~l~iPtIGIGaG~ 284 (293)
-.+.. +.++.+.+.+++|++..|.=.
T Consensus 173 ~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~ 207 (232)
T TIGR03572 173 NSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAG 207 (232)
T ss_pred eCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCC
Confidence 87542 889999999999999877543
No 44
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.97 E-value=0.018 Score=52.35 Aligned_cols=157 Identities=25% Similarity=0.323 Sum_probs=90.3
Q ss_pred HHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 103 ~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ke 182 (293)
--|+.++++|+|.+.+=|--+. |+. ... -+...+.+++.++.| ++++ |+. .|.+++ .+++ +
T Consensus 31 ~~a~~~~~~G~~~i~i~d~~~~---~~~--~~~----~~~~i~~i~~~~~~p-v~~~---GGI-~s~~d~----~~~l-~ 91 (243)
T cd04731 31 ELAKRYNEQGADELVFLDITAS---SEG--RET----MLDVVERVAEEVFIP-LTVG---GGI-RSLEDA----RRLL-R 91 (243)
T ss_pred HHHHHHHHCCCCEEEEEcCCcc---ccc--Ccc----cHHHHHHHHHhCCCC-EEEe---CCC-CCHHHH----HHHH-H
Confidence 3577888999998765443321 111 111 244556677777788 6666 566 467776 4566 4
Q ss_pred hCCCEEEeCCCCCCcHHHHHHHHHc-CC-cEEEeccccceeeeecCCccc--ccCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 022677 183 GGMDAIKLEGGSPSRITAARGIVEA-GI-AVMGHVGLTPQAISVLGGFRP--QGKNVTSAVKVVETALALQEVGCFSVVL 258 (293)
Q Consensus 183 aGa~gVkiEgg~~~~~~~ikal~~~-GI-pV~GHiGLtPq~~~~lgGf~v--qGrt~~~a~e~l~rA~a~eeAGA~~Ivl 258 (293)
.|+++|-+--....-+...+.+.+. +- .+. +.|.-.. ....++++ .|-.++...+.++.++.++++|++.|.+
T Consensus 92 ~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~--~~ld~k~-~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v 168 (243)
T cd04731 92 AGADKVSINSAAVENPELIREIAKRFGSQCVV--VSIDAKR-RGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILL 168 (243)
T ss_pred cCCceEEECchhhhChHHHHHHHHHcCCCCEE--EEEEeee-cCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEE
Confidence 7899997743322223445555542 10 011 1111000 00001222 2222222345678889999999999888
Q ss_pred cCCC---------HHHHHHHHHhcCCCEEEeC
Q 022677 259 ECVP---------PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 259 E~vp---------~e~a~~It~~l~iPtIGIG 281 (293)
-.+. -+.++.+.+.+++|+|.-|
T Consensus 169 ~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~G 200 (243)
T cd04731 169 TSMDRDGTKKGYDLELIRAVSSAVNIPVIASG 200 (243)
T ss_pred eccCCCCCCCCCCHHHHHHHHhhCCCCEEEeC
Confidence 5544 3889999999999999766
No 45
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.96 E-value=0.035 Score=52.92 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=75.0
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCC-eEE-e--eCCCCCCCCCHHHHHHHHHHH
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRP-LLV-G--DLPFGTYESSTNQAVDTAVRI 179 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt-~~vtl~eml~h~raV~Ra~~~p-~vv-a--DmpfGsy~~s~e~av~~A~rl 179 (293)
.+-.+++|+..|.+-|...--.-|+..+ ..++.+||+...++++.+...+ |++ + |--. . ...+++++-+...
T Consensus 94 v~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~-~--~g~deAI~Ra~ay 170 (285)
T TIGR02317 94 VREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARA-V--EGLDAAIERAKAY 170 (285)
T ss_pred HHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCccc-c--cCHHHHHHHHHHH
Confidence 5667899999999999875434466555 4679999999999998876543 555 4 5432 2 2578999998766
Q ss_pred HHHhCCCEEEeCCCCCCcHHHHHHHHHc-CCcEEEec
Q 022677 180 LKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHV 215 (293)
Q Consensus 180 ~keaGa~gVkiEgg~~~~~~~ikal~~~-GIpV~GHi 215 (293)
. ++|||+|.+|+-. ..+.+++++++ .+|++..+
T Consensus 171 ~-~AGAD~vfi~g~~--~~e~i~~~~~~i~~Pl~~n~ 204 (285)
T TIGR02317 171 V-EAGADMIFPEALT--SLEEFRQFAKAVKVPLLANM 204 (285)
T ss_pred H-HcCCCEEEeCCCC--CHHHHHHHHHhcCCCEEEEe
Confidence 5 7999999999854 24445666553 56776553
No 46
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.96 E-value=0.21 Score=47.72 Aligned_cols=186 Identities=10% Similarity=0.081 Sum_probs=115.0
Q ss_pred CCHHHH-HHhhhCCCcEEEEecCCHHHHH----HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC-
Q 022677 79 VTLTHL-RQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK- 152 (293)
Q Consensus 79 ~t~~~L-r~l~~~g~pi~m~tayD~~SAr----iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~- 152 (293)
++++++ +..++++--+-..|+||..+++ .||+.+.++|+--........| .++.+...++..++..+
T Consensus 4 v~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~-------~~~~~~~~~~~~A~~~~~ 76 (286)
T PRK08610 4 VSMKEMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMS-------GFYTVVKMVEGLMHDLNI 76 (286)
T ss_pred CcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcC-------cHHHHHHHHHHHHHHcCC
Confidence 344444 3444566678899999999985 5678899999832222111111 24556667777776665
Q ss_pred -CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeee
Q 022677 153 -RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISV 224 (293)
Q Consensus 153 -~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~ 224 (293)
.| |+.-+.-| . +.|.. .+.+ +.|..+|.+-+... ....+++..-..|+.|=|=+|-++..+..
T Consensus 77 ~vP-V~lHLDHg-~--~~e~i----~~ai-~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~ 147 (286)
T PRK08610 77 TIP-VAIHLDHG-S--SFEKC----KEAI-DAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDD 147 (286)
T ss_pred CCC-EEEECCCC-C--CHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCC
Confidence 57 77777764 2 45555 4557 58999999976532 23356666678999998888755533211
Q ss_pred cCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec------------CCCHHHHHHHHHhcCCCEEEeCCCCCCC
Q 022677 225 LGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE------------CVPPPVAAAATSALQIPTIGIGAGPFCS 287 (293)
Q Consensus 225 lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE------------~vp~e~a~~It~~l~iPtIGIGaG~~~d 287 (293)
..+-...--+.+++.+.+ ++-|+|+|=+= -+.-+..+.|.+.+++|+ .+-+|+|.+
T Consensus 148 ~~~~~~~yT~peea~~Fv------~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPL-VLHGgSG~~ 215 (286)
T PRK08610 148 VVADGIIYADPKECQELV------EKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPL-VLHGGTGIP 215 (286)
T ss_pred CCCcccccCCHHHHHHHH------HHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCE-EEeCCCCCC
Confidence 000000112334444444 35699987543 233588899999999997 566666654
No 47
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=96.92 E-value=0.023 Score=51.05 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=89.4
Q ss_pred CCHHH-HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHH
Q 022677 100 YDYPS-AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178 (293)
Q Consensus 100 yD~~S-Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~r 178 (293)
.|... |+..++.|+|.+.+-|-= ...-|.+ .. +...+.+++.++.|+ .++ |+. .|.+++ .+
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld-~~~~g~~----~~----~~~i~~i~~~~~~pv-~~~---GGI-~~~ed~----~~ 91 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLD-GAKAGKP----VN----LELIEAIVKAVDIPV-QVG---GGI-RSLETV----EA 91 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCC-ccccCCc----cc----HHHHHHHHHHCCCCE-EEc---CCc-CCHHHH----HH
Confidence 34443 777888999999875531 1112221 11 455567777777884 444 456 577777 35
Q ss_pred HHHHhCCCEEEeCCCCCCcHHHHHHHHHc---CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcE
Q 022677 179 ILKEGGMDAIKLEGGSPSRITAARGIVEA---GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFS 255 (293)
Q Consensus 179 l~keaGa~gVkiEgg~~~~~~~ikal~~~---GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~ 255 (293)
++ +.||+.|-+=-.....+..++.+.+. .|.+ . +-.. .+-+.+.|-......+.++.++.+++.||+.
T Consensus 92 ~~-~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~v--s--id~k----~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ 162 (233)
T PRK00748 92 LL-DAGVSRVIIGTAAVKNPELVKEACKKFPGKIVV--G--LDAR----DGKVATDGWLETSGVTAEDLAKRFEDAGVKA 162 (233)
T ss_pred HH-HcCCCEEEECchHHhCHHHHHHHHHHhCCCcee--e--eecc----CCEEEEccCeecCCCCHHHHHHHHHhcCCCE
Confidence 55 58999986633221123345555553 1222 1 1111 0001112211111235577889999999997
Q ss_pred EEecCCC---------HHHHHHHHHhcCCCEEEeC
Q 022677 256 VVLECVP---------PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 256 IvlE~vp---------~e~a~~It~~l~iPtIGIG 281 (293)
|++-.+. -+.++.+++.+++|+|.-|
T Consensus 163 ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~G 197 (233)
T PRK00748 163 IIYTDISRDGTLSGPNVEATRELAAAVPIPVIASG 197 (233)
T ss_pred EEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeC
Confidence 7766442 4888999999999998654
No 48
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.91 E-value=0.24 Score=47.31 Aligned_cols=186 Identities=10% Similarity=0.079 Sum_probs=114.1
Q ss_pred CCHHHHH-HhhhCCCcEEEEecCCHHHHH----HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC-
Q 022677 79 VTLTHLR-QKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK- 152 (293)
Q Consensus 79 ~t~~~Lr-~l~~~g~pi~m~tayD~~SAr----iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~- 152 (293)
+|++++. .-++++--+-..|+||..+++ .||+.+.++|+--+.... .|- ..++.+...++..++..+
T Consensus 4 v~~~~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~---~~~----~~~~~~~~~~~~~a~~~~~ 76 (285)
T PRK07709 4 VSMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAA---RHM----TGFKTVVAMVKALIEEMNI 76 (285)
T ss_pred CcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchh---hhc----CCHHHHHHHHHHHHHHcCC
Confidence 4454544 444566678889999999985 567779999983222111 110 245566677777777554
Q ss_pred -CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeee
Q 022677 153 -RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISV 224 (293)
Q Consensus 153 -~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~ 224 (293)
.| |+.-+.-| .+.+.. .+.+ ++|..+|.+-+... ....+++..-..|+.|=|=+|-++..+..
T Consensus 77 ~VP-V~lHLDHg---~~~e~i----~~ai-~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~ 147 (285)
T PRK07709 77 TVP-VAIHLDHG---SSFEKC----KEAI-DAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDD 147 (285)
T ss_pred CCc-EEEECCCC---CCHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCC
Confidence 57 77777754 244554 4567 58999999976532 13355666667899998887755433211
Q ss_pred cCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec------------CCCHHHHHHHHHhcCCCEEEeCCCCCCC
Q 022677 225 LGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE------------CVPPPVAAAATSALQIPTIGIGAGPFCS 287 (293)
Q Consensus 225 lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE------------~vp~e~a~~It~~l~iPtIGIGaG~~~d 287 (293)
..+-...--+.++|.+.++ +-|+|++-+= -+.-+..+.|.+++++|+ .+-+|+|.+
T Consensus 148 ~~~~~~~yT~peeA~~Fv~------~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPL-VLHGgSG~~ 215 (285)
T PRK07709 148 VIAEGVIYADPAECKHLVE------ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPL-VLHGGTGIP 215 (285)
T ss_pred cccccccCCCHHHHHHHHH------HhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCE-EEeCCCCCC
Confidence 0000000123344444433 3599988752 233488899999999997 576676654
No 49
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.87 E-value=0.27 Score=46.98 Aligned_cols=184 Identities=10% Similarity=0.122 Sum_probs=113.2
Q ss_pred CCHHHHH-HhhhCCCcEEEEecCCHHHHH----HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCC
Q 022677 79 VTLTHLR-QKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (293)
Q Consensus 79 ~t~~~Lr-~l~~~g~pi~m~tayD~~SAr----iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~ 153 (293)
+|++++. ..++++--+-..|+|+..+++ .||+.+.++|+-..-.... ...++.+...++..++..+.
T Consensus 4 v~~k~ll~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~--------~~g~~~~~~~~~~~A~~~~v 75 (283)
T PRK07998 4 VNGRILLDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQ--------LSGYDYIYEIVKRHADKMDV 75 (283)
T ss_pred CcHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHh--------hCCHHHHHHHHHHHHHHCCC
Confidence 4454444 444566678889999999885 5677899999854222221 23466677788888888888
Q ss_pred CeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeee-c
Q 022677 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISV-L 225 (293)
Q Consensus 154 p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~-l 225 (293)
| |+.-+.-| .+.+.. .+.+ +.|.++|.+-|... ....+++..-..|++|=+=+|-+...+.- .
T Consensus 76 P-V~lHLDH~---~~~e~i----~~Ai-~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~ 146 (283)
T PRK07998 76 P-VSLHLDHG---KTFEDV----KQAV-RAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHV 146 (283)
T ss_pred C-EEEECcCC---CCHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccc
Confidence 8 66666654 244444 3446 58999999954421 12345666678899996666644322210 0
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec-----------CCCHHHHHHHHHhcCCCEEEeCCCCCCC
Q 022677 226 GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE-----------CVPPPVAAAATSALQIPTIGIGAGPFCS 287 (293)
Q Consensus 226 gGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE-----------~vp~e~a~~It~~l~iPtIGIGaG~~~d 287 (293)
.+ ...-.+.+++.+ -+++-|+|++=+= .+.-+..+.|.+.+++|+. +-+|++.+
T Consensus 147 ~~-~~~~T~pe~a~~------Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLV-lHGgSG~~ 211 (283)
T PRK07998 147 SE-ADCKTEPEKVKD------FVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLV-IHGGSGIP 211 (283)
T ss_pred cc-ccccCCHHHHHH------HHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEE-EeCCCCCC
Confidence 00 011123333322 3346789976542 2335899999999999965 66666654
No 50
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.86 E-value=0.068 Score=48.00 Aligned_cols=128 Identities=18% Similarity=0.160 Sum_probs=80.9
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE---eeC---CCCCCCCCHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV---GDL---PFGTYESSTNQAVDTAV 177 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv---aDm---pfGsy~~s~e~av~~A~ 177 (293)
-|+.++++|+..+.++ + ....+.|++.++.|++. -|. ++--| .+.+++
T Consensus 28 ~a~a~~~~G~~~~~~~----------------~----~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~-~~~~~v----- 81 (221)
T PRK01130 28 MALAAVQGGAVGIRAN----------------G----VEDIKAIRAVVDVPIIGIIKRDYPDSEVYIT-PTLKEV----- 81 (221)
T ss_pred HHHHHHHCCCeEEEcC----------------C----HHHHHHHHHhCCCCEEEEEecCCCCCCceEC-CCHHHH-----
Confidence 4666788898777663 1 23446666667889762 242 33223 233443
Q ss_pred HHHHHhCCCEEEeCCCC------CCcHHHHHHHHH-cCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHH
Q 022677 178 RILKEGGMDAIKLEGGS------PSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQE 250 (293)
Q Consensus 178 rl~keaGa~gVkiEgg~------~~~~~~ikal~~-~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~ee 250 (293)
+..+++||+.|-+-... +....+++++.+ .|++++.- ..| .++++.+++
T Consensus 82 ~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~-----------------v~t-------~ee~~~a~~ 137 (221)
T PRK01130 82 DALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMAD-----------------CST-------LEEGLAAQK 137 (221)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEe-----------------CCC-------HHHHHHHHH
Confidence 33457999988763321 334567888888 78887631 123 234567899
Q ss_pred cCCcEEEecC----------CC--HHHHHHHHHhcCCCEEEeC
Q 022677 251 VGCFSVVLEC----------VP--PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 251 AGA~~IvlE~----------vp--~e~a~~It~~l~iPtIGIG 281 (293)
+|+|.+.+.. .+ .+.++.+.+.+++|++..|
T Consensus 138 ~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~G 180 (221)
T PRK01130 138 LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEG 180 (221)
T ss_pred cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEEC
Confidence 9999997631 12 4788999999999999644
No 51
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.83 E-value=0.29 Score=46.54 Aligned_cols=178 Identities=15% Similarity=0.186 Sum_probs=114.6
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCcEEE-ECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEe
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAr----iae~AG~Dail-vGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vva 158 (293)
|+.-.+++--+-..|+||..+++ .||+.+.++|+ +..+. . ....++.+...++..++..+.| |..
T Consensus 5 L~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~-~--------~~~~~~~~~~~~~~~a~~~~VP-V~l 74 (276)
T cd00947 5 LKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGA-I--------KYAGLELLVAMVKAAAERASVP-VAL 74 (276)
T ss_pred HHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcch-h--------hhCCHHHHHHHHHHHHHHCCCC-EEE
Confidence 45555667778999999999987 46788999998 43221 1 1234777888888888888888 666
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccc
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ 231 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vq 231 (293)
-+.-| .+.+.. .+.+ +.|.++|.+-+... ....+++.....||.|=|=+|-++-......+-...
T Consensus 75 HLDH~---~~~~~i----~~ai-~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~ 146 (276)
T cd00947 75 HLDHG---SSFELI----KRAI-RAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGL 146 (276)
T ss_pred ECCCC---CCHHHH----HHHH-HhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccccccc
Confidence 66654 244544 3456 58999999976532 133556666788999987777444222111000000
Q ss_pred cCCHHHHHHHHHHHHHHHH-cCCcEEEec----------CCC---HHHHHHHHHhcCCCEEEeCCCCCCC
Q 022677 232 GKNVTSAVKVVETALALQE-VGCFSVVLE----------CVP---PPVAAAATSALQIPTIGIGAGPFCS 287 (293)
Q Consensus 232 Grt~~~a~e~l~rA~a~ee-AGA~~IvlE----------~vp---~e~a~~It~~l~iPtIGIGaG~~~d 287 (293)
--+.+ .|+.|.+ -|+|+|=+- +-| -++.+.|.+.+++|+. +-+|++++
T Consensus 147 ~T~pe-------~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLV-lHGgSG~~ 208 (276)
T cd00947 147 LTDPE-------EAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLV-LHGGSGIP 208 (276)
T ss_pred CCCHH-------HHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEE-EeCCCCCC
Confidence 11233 3444443 589987632 123 4899999999999995 66666654
No 52
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.81 E-value=0.36 Score=46.11 Aligned_cols=184 Identities=14% Similarity=0.167 Sum_probs=115.0
Q ss_pred CCHHHHHH-hhhCCCcEEEEecCCHHHHH----HHHHcCCcEEE-ECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 022677 79 VTLTHLRQ-KHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (293)
Q Consensus 79 ~t~~~Lr~-l~~~g~pi~m~tayD~~SAr----iae~AG~Dail-vGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~ 152 (293)
+|++++.+ .++++--+-..|+||..+++ .||+.+.++|+ +..+. ... ..++.+...++..++..+
T Consensus 4 v~~k~iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~-~~~--------~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK12857 4 VTVAELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGA-IKY--------AGIEYISAMVRTAAEKAS 74 (284)
T ss_pred CcHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhH-hhh--------CCHHHHHHHHHHHHHHCC
Confidence 44555444 44555678899999999985 56788999998 43222 111 336667777888888888
Q ss_pred CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeeec
Q 022677 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISVL 225 (293)
Q Consensus 153 ~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~l 225 (293)
.| |+.-+.-| . +.|.. .+.+ ++|..+|.+-|... ...++++..-..|+.|=|=+|-++-.+...
T Consensus 75 VP-ValHLDH~-~--~~e~i----~~ai-~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~ 145 (284)
T PRK12857 75 VP-VALHLDHG-T--DFEQV----MKCI-RNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDI 145 (284)
T ss_pred CC-EEEECCCC-C--CHHHH----HHHH-HcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCC
Confidence 88 66666654 2 44443 4556 57999999976531 233556666789999988877554322110
Q ss_pred CCc--ccccCCHHHHHHHHHHHHHHHHcCCcEEEecC------------CCHHHHHHHHHhcCCCEEEeCCCCCCC
Q 022677 226 GGF--RPQGKNVTSAVKVVETALALQEVGCFSVVLEC------------VPPPVAAAATSALQIPTIGIGAGPFCS 287 (293)
Q Consensus 226 gGf--~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~------------vp~e~a~~It~~l~iPtIGIGaG~~~d 287 (293)
... ...--+.+++.+.+ ++-|+|+|=+-- +.-++.+.|.+.+++|+ .+-+|+|++
T Consensus 146 ~~~~~~~~~T~pe~a~~Fv------~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPL-VlHGgSG~~ 214 (284)
T PRK12857 146 TVDEREAAMTDPEEARRFV------EETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPI-VLHGSSGVP 214 (284)
T ss_pred CcccchhhcCCHHHHHHHH------HHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCE-EEeCCCCCC
Confidence 000 00011223333333 345999875431 23489999999999997 576676653
No 53
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.14 Score=50.06 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=112.9
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHH
Q 022677 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTN 170 (293)
Q Consensus 91 g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e 170 (293)
++|..+..+=+...-+.+-++|+|++.+|-. .-...+.. ...|.+|+...++..-..-...+|..++-. . .+..
T Consensus 5 ~~~ell~pag~l~~l~~ai~~GADaVY~G~~-~~~~R~~a--~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~--~-~~~~ 78 (347)
T COG0826 5 GKPELLAPAGNLEDLKAAIAAGADAVYIGEK-EFGLRRRA--LNFSVEDLAEAVELAHSAGKKVYVAVNTLL--H-NDEL 78 (347)
T ss_pred CcceeecCCCCHHHHHHHHHcCCCEEEeCCc-cccccccc--ccCCHHHHHHHHHHHHHcCCeEEEEecccc--c-cchh
Confidence 3455666666677777777899999999976 23344444 568888887777766554444556677664 3 2334
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcC--CcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHH
Q 022677 171 QAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAG--IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALAL 248 (293)
Q Consensus 171 ~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~G--IpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~ 248 (293)
+.+....+.+.+.|+|+|-+-| +-++..+.+.+ +|+. +-+|... .+ .+.++-|
T Consensus 79 ~~~~~~l~~l~e~GvDaviv~D-----pg~i~l~~e~~p~l~ih----~S~q~~v---------~N-------~~~~~f~ 133 (347)
T COG0826 79 ETLERYLDRLVELGVDAVIVAD-----PGLIMLARERGPDLPIH----VSTQANV---------TN-------AETAKFW 133 (347)
T ss_pred hHHHHHHHHHHHcCCCEEEEcC-----HHHHHHHHHhCCCCcEE----EeeeEec---------CC-------HHHHHHH
Confidence 4455556666689999999987 55678788888 7774 2233211 12 3467889
Q ss_pred HHcCCcEEEecC-CCHHHHHHHHHhcC-CCEEEeCCCC---CCCcee
Q 022677 249 QEVGCFSVVLEC-VPPPVAAAATSALQ-IPTIGIGAGP---FCSGQV 290 (293)
Q Consensus 249 eeAGA~~IvlE~-vp~e~a~~It~~l~-iPtIGIGaG~---~~dGQv 290 (293)
.+.|+--++++- ++.+.++.|.++++ +++=.|--|. .|||+-
T Consensus 134 ~~~G~~rvVl~rEls~~ei~~i~~~~~~veiEvfVhGalcia~SgRC 180 (347)
T COG0826 134 KELGAKRVVLPRELSLEEIKEIKEQTPDVEIEVFVHGALCIAYSGRC 180 (347)
T ss_pred HHcCCEEEEeCccCCHHHHHHHHHhCCCceEEEEEecchhhccCchh
Confidence 999998888885 56777788889885 7654444443 455543
No 54
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.78 E-value=0.31 Score=46.57 Aligned_cols=186 Identities=12% Similarity=0.106 Sum_probs=115.7
Q ss_pred CCHHHHH-HhhhCCCcEEEEecCCHHHHH----HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc--
Q 022677 79 VTLTHLR-QKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-- 151 (293)
Q Consensus 79 ~t~~~Lr-~l~~~g~pi~m~tayD~~SAr----iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~-- 151 (293)
++++++. ...+++--+-..|+||+.+++ .||+.+.++|+--...... | ...++.+...++..++..
T Consensus 4 v~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~---~----~~g~~~~~~~~~~~a~~~~~ 76 (288)
T TIGR00167 4 VDVKELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAK---Y----IAGLGAISAMVKAMSEAYPY 76 (288)
T ss_pred ccHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhh---c----cCCHHHHHHHHHHHHHhccC
Confidence 3444444 444566678899999999995 5678899999843222111 1 023777888888888877
Q ss_pred CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeee
Q 022677 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISV 224 (293)
Q Consensus 152 ~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~ 224 (293)
+.| |+.-+.-| . +.|.. .+-+ +.|..+|.+-+... ....+++..-..||.|=|=+|-++.....
T Consensus 77 ~VP-V~lHLDHg-~--~~e~i----~~ai-~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~ 147 (288)
T TIGR00167 77 GVP-VALHLDHG-A--SEEDC----AQAV-KAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDG 147 (288)
T ss_pred CCc-EEEECCCC-C--CHHHH----HHHH-HcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCC
Confidence 778 77777654 2 44444 3456 58999999976532 13345565668899998888755433221
Q ss_pred cCCccc-ccCCHHHHHHHHHHHHHHH-HcCCcEEEecC-------------CCHHHHHHHHHhcCCCEEEeCCCCCCC
Q 022677 225 LGGFRP-QGKNVTSAVKVVETALALQ-EVGCFSVVLEC-------------VPPPVAAAATSALQIPTIGIGAGPFCS 287 (293)
Q Consensus 225 lgGf~v-qGrt~~~a~e~l~rA~a~e-eAGA~~IvlE~-------------vp~e~a~~It~~l~iPtIGIGaG~~~d 287 (293)
.....- ..-|+ -+.|+.|. +-|+|+|=+=- +.-++.+.|.+.+++|+. +-+|++++
T Consensus 148 ~~~~~~~~~~T~------peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLV-lHGgSG~~ 218 (288)
T TIGR00167 148 VSVADESALYTD------PEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLV-LHGGSGIP 218 (288)
T ss_pred cccccccccCCC------HHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEE-EeCCCCCC
Confidence 000000 00111 13444444 46999886431 445899999999999965 66666654
No 55
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.70 E-value=0.028 Score=53.53 Aligned_cols=155 Identities=21% Similarity=0.268 Sum_probs=92.4
Q ss_pred EEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcc-cCCCeEEeeCCCCCCCCCHHHHHH
Q 022677 96 MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG-AKRPLLVGDLPFGTYESSTNQAVD 174 (293)
Q Consensus 96 m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra-~~~p~vvaDmpfGsy~~s~e~av~ 174 (293)
|...-|.+.-+++.+.|.|++.+- .+..-.+-+.+. ....+ .... ...| +++-+- | .++++..+
T Consensus 15 m~~~t~~~fR~l~~~~g~~~~~te-mi~~~~l~~~~~---~~~~~------~~~~~~~~p-~i~ql~-g---~~~~~~~~ 79 (319)
T TIGR00737 15 MAGVTDSPFRRLVAEYGAGLTVCE-MVSSEAIVYDSQ---RTMRL------LDIAEDETP-ISVQLF-G---SDPDTMAE 79 (319)
T ss_pred CCCCCcHHHHHHHHHHCCCEEEEC-CEEEhhhhcCCH---HHHHH------hhcCCccce-EEEEEe-C---CCHHHHHH
Confidence 567789999999999999988763 222222222221 00111 1111 2345 666654 2 46888888
Q ss_pred HHHHHHHHhCCCEEEeCCCCC------------------CcHHHHHHHHH-cCCcEEEeccccceeeeecCCcccccCCH
Q 022677 175 TAVRILKEGGMDAIKLEGGSP------------------SRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNV 235 (293)
Q Consensus 175 ~A~rl~keaGa~gVkiEgg~~------------------~~~~~ikal~~-~GIpV~GHiGLtPq~~~~lgGf~vqGrt~ 235 (293)
.|.++ +++|+|+|.|-.|.. ...++++++.+ .++|+.--+. .|+. .
T Consensus 80 aa~~~-~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir---------~g~~---~-- 144 (319)
T TIGR00737 80 AAKIN-EELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIR---------IGWD---D-- 144 (319)
T ss_pred HHHHH-HhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEE---------cccC---C--
Confidence 77665 579999999965431 11234444433 2455542211 1221 1
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCC--------C--HHHHHHHHHhcCCCEEEeC
Q 022677 236 TSAVKVVETALALQEVGCFSVVLECV--------P--PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 236 ~~a~e~l~rA~a~eeAGA~~IvlE~v--------p--~e~a~~It~~l~iPtIGIG 281 (293)
...++++-++.++++|+|.|.+-+- + -+.++.|.+.+++|+|+-|
T Consensus 145 -~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 199 (319)
T TIGR00737 145 -AHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNG 199 (319)
T ss_pred -CcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeC
Confidence 1124667889999999999988542 2 3678899999999998755
No 56
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.67 E-value=0.2 Score=47.84 Aligned_cols=179 Identities=17% Similarity=0.159 Sum_probs=111.2
Q ss_pred CCHHHHH-HhhhCCCcEEEEecCCHHHHH----HHHHcCCcEEE-ECchhhhhhccCCCCccCCHHHHHHHHHHHHccc-
Q 022677 79 VTLTHLR-QKHKNGEPITMVTAYDYPSAV----HLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA- 151 (293)
Q Consensus 79 ~t~~~Lr-~l~~~g~pi~m~tayD~~SAr----iae~AG~Dail-vGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~- 151 (293)
++++++. +.++++--+-..|+||..+++ .||+.+.++|+ ++.+. .-.+| .++.+...++.+++..
T Consensus 4 v~~~~~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~-~~~~~-------~~~~~~~~~~~~a~~~~ 75 (293)
T PRK07315 4 VSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGA-AKYMG-------GYKVCKNLIENLVESMG 75 (293)
T ss_pred CcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccH-HhhcC-------cHHHHHHHHHHHHHHcC
Confidence 4444444 444556678899999999985 56778999998 43222 21122 2455666677777766
Q ss_pred -CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeee
Q 022677 152 -KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAIS 223 (293)
Q Consensus 152 -~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~ 223 (293)
+.| |+.-+.-|+| +.. .+.+ ++|.+.|.+-+... ....+++.....|++|-+=+|-+.-..
T Consensus 76 ~~vP-V~lHLDH~~~----~~i----~~ai-~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~e- 144 (293)
T PRK07315 76 ITVP-VAIHLDHGHY----EDA----LECI-EVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEE- 144 (293)
T ss_pred CCCc-EEEECCCCCH----HHH----HHHH-HcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcC-
Confidence 557 7777776533 322 3456 58999999976532 122344444568999988877332111
Q ss_pred ecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec--CC--------C---HHHHHHHHHhc-CCCEEEeCCC
Q 022677 224 VLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE--CV--------P---PPVAAAATSAL-QIPTIGIGAG 283 (293)
Q Consensus 224 ~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE--~v--------p---~e~a~~It~~l-~iPtIGIGaG 283 (293)
+. +.|.+. ..-.++|+.+.+.|+|.|=+= .+ | -+..+.|.+.+ ++|+..+|+.
T Consensus 145 ---d~-~~g~s~---~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGS 211 (293)
T PRK07315 145 ---DG-IIGKGE---LAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGS 211 (293)
T ss_pred ---cc-ccCccC---CCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCC
Confidence 11 233321 012344555667899988654 22 2 48899999999 5999999873
No 57
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.66 E-value=0.039 Score=50.69 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=90.8
Q ss_pred HHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 103 ~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ke 182 (293)
..|+..++.|++.+.+=|--+.-. ... .-+...+.|++.++.| +.++ |+. .|.+++ .+++ +
T Consensus 34 ~~a~~~~~~G~~~i~i~dl~~~~~-----~~~----~~~~~i~~i~~~~~ip-v~~~---GGi-~s~~~~----~~~l-~ 94 (253)
T PRK02083 34 ELAKRYNEEGADELVFLDITASSE-----GRD----TMLDVVERVAEQVFIP-LTVG---GGI-RSVEDA----RRLL-R 94 (253)
T ss_pred HHHHHHHHcCCCEEEEEeCCcccc-----cCc----chHHHHHHHHHhCCCC-EEee---CCC-CCHHHH----HHHH-H
Confidence 467778899999997655433110 111 2255667777777788 6666 556 466766 4566 4
Q ss_pred hCCCEEEeCCCCCCcHHHHHHHHHcC--CcEEEeccccceeeeecCCccc--ccCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 022677 183 GGMDAIKLEGGSPSRITAARGIVEAG--IAVMGHVGLTPQAISVLGGFRP--QGKNVTSAVKVVETALALQEVGCFSVVL 258 (293)
Q Consensus 183 aGa~gVkiEgg~~~~~~~ikal~~~G--IpV~GHiGLtPq~~~~lgGf~v--qGrt~~~a~e~l~rA~a~eeAGA~~Ivl 258 (293)
.|+++|-+--.....+..++.+.+.- =.++--+.+-.- ...+.|.+ -|-.+......++.++.++++|++.|.+
T Consensus 95 ~Ga~~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~ 172 (253)
T PRK02083 95 AGADKVSINSAAVANPELISEAADRFGSQCIVVAIDAKRD--PEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILL 172 (253)
T ss_pred cCCCEEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccC--CCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEE
Confidence 89999977432222345556665531 012211211000 00011111 1111111225567778889999998877
Q ss_pred cCCC---------HHHHHHHHHhcCCCEEEeCC
Q 022677 259 ECVP---------PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 259 E~vp---------~e~a~~It~~l~iPtIGIGa 282 (293)
-.+. -++++.+++.+++|+|.-|.
T Consensus 173 ~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GG 205 (253)
T PRK02083 173 TSMDRDGTKNGYDLELTRAVSDAVNVPVIASGG 205 (253)
T ss_pred cCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECC
Confidence 4433 38889999999999997663
No 58
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.63 E-value=0.13 Score=49.30 Aligned_cols=113 Identities=11% Similarity=0.034 Sum_probs=67.5
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCC
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfG 163 (293)
|.++.+.| +.+-+-+.-.|+++|+||.-.+.+=+-+.+-. ...+.|-.-.=..+.++|++.++.| |++=.=-
T Consensus 3 ~~~~~~~g---~~~~v~~~~qa~~ae~aga~~v~~~~~~~~~~---~~~~~v~R~~~~~~I~~Ik~~V~iP-VIGi~K~- 74 (283)
T cd04727 3 FAQMLKGG---VIMDVTNAEQARIAEEAGAVAVMALERVPADI---RAAGGVARMADPKMIKEIMDAVSIP-VMAKVRI- 74 (283)
T ss_pred HHHHhcCC---eEEEeCCHHHHHHHHHcCceEEeeeccCchhh---hhcCCeeecCCHHHHHHHHHhCCCC-eEEeeeh-
Confidence 56676654 56778889999999999998887733332211 1111222222256778899989889 5533222
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCC---cHHHHHHHHHc-CCcEEEec
Q 022677 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS---RITAARGIVEA-GIAVMGHV 215 (293)
Q Consensus 164 sy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~---~~~~ikal~~~-GIpV~GHi 215 (293)
+| ..++ ..+. ++|+|.| |..+. ..++++.+... ++|+|.-+
T Consensus 75 ~~---~~Ea----~~L~-eaGvDiI---DaT~r~rP~~~~~~~iK~~~~~l~MAD~ 119 (283)
T cd04727 75 GH---FVEA----QILE-ALGVDMI---DESEVLTPADEEHHIDKHKFKVPFVCGA 119 (283)
T ss_pred hH---HHHH----HHHH-HcCCCEE---eccCCCCcHHHHHHHHHHHcCCcEEccC
Confidence 23 2333 4455 7999999 44321 23455655553 78888543
No 59
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=96.61 E-value=0.054 Score=50.70 Aligned_cols=169 Identities=21% Similarity=0.286 Sum_probs=111.1
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCC
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfG 163 (293)
|+++..-|.|+ .-|+.=++.|+|=+.-=| ..++..| .+-|++-++++++-.-.||-++ |
T Consensus 23 F~~lrd~GDpV--------elA~~Y~e~GADElvFlD-ItAs~~g--------r~~~~~vv~r~A~~vfiPltVG----G 81 (256)
T COG0107 23 FKNLRDAGDPV--------ELAKRYNEEGADELVFLD-ITASSEG--------RETMLDVVERVAEQVFIPLTVG----G 81 (256)
T ss_pred ccchhhcCChH--------HHHHHHHHcCCCeEEEEe-ccccccc--------chhHHHHHHHHHhhceeeeEec----C
Confidence 56666667774 457777889998775322 1122222 3457788888888888886664 4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeee--ecCCcccc---cCCHHHH
Q 022677 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAIS--VLGGFRPQ---GKNVTSA 238 (293)
Q Consensus 164 sy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~--~lgGf~vq---Grt~~~a 238 (293)
+- .|.|++ .+++ .+|||=|.|--..-..+++|+.+.+.==.-|-=+++-+.+.. ..++|.+. ||.. .-
T Consensus 82 GI-~s~eD~----~~ll-~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~-t~ 154 (256)
T COG0107 82 GI-RSVEDA----RKLL-RAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGRED-TG 154 (256)
T ss_pred Cc-CCHHHH----HHHH-HcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcC-CC
Confidence 55 466666 6788 699999988754333467777776521111222334444432 23345552 3432 34
Q ss_pred HHHHHHHHHHHHcCCcEEEecCCC---------HHHHHHHHHhcCCCEEEe
Q 022677 239 VKVVETALALQEVGCFSVVLECVP---------PPVAAAATSALQIPTIGI 280 (293)
Q Consensus 239 ~e~l~rA~a~eeAGA~~IvlE~vp---------~e~a~~It~~l~iPtIGI 280 (293)
.+++++|+++|+.||-=|+|-++. -++.+.+++.++||+|.=
T Consensus 155 ~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIAS 205 (256)
T COG0107 155 LDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAVNIPVIAS 205 (256)
T ss_pred cCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhCCCCEEec
Confidence 688999999999999999998875 388999999999999943
No 60
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.51 E-value=0.086 Score=51.19 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=74.0
Q ss_pred CccCCHHHHHHHHHHHHcc-cCCCeEEeeCC-CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCC
Q 022677 132 TLPITLEEMLVHCRAVARG-AKRPLLVGDLP-FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGI 209 (293)
Q Consensus 132 t~~vtl~eml~h~raV~Ra-~~~p~vvaDmp-fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GI 209 (293)
....+.+++-...+.++.- ++.| +-+++. |... ...++- .+++.+.++..|-+-+|.. ..++++.+.||
T Consensus 34 ~~~~~~e~l~~~i~~~~~l~tdkP-fGVnl~~~~~~-~~~~~~----l~vi~e~~v~~V~~~~G~P---~~~~~lk~~Gi 104 (320)
T cd04743 34 LALMRGEQVKALLEETAELLGDKP-WGVGILGFVDT-ELRAAQ----LAVVRAIKPTFALIAGGRP---DQARALEAIGI 104 (320)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCC-eEEEEeccCCC-cchHHH----HHHHHhcCCcEEEEcCCCh---HHHHHHHHCCC
Confidence 3445677777777777663 6777 444442 3111 112233 3455578999999988763 23688999999
Q ss_pred cEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCCH----------HHHHHHHHhc------
Q 022677 210 AVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPP----------PVAAAATSAL------ 273 (293)
Q Consensus 210 pV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~----------e~a~~It~~l------ 273 (293)
+|+.|+. | ++.|+.++++|||+|++|+... .+...+.+.+
T Consensus 105 ~v~~~v~-----------------s-------~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~ 160 (320)
T cd04743 105 STYLHVP-----------------S-------PGLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGP 160 (320)
T ss_pred EEEEEeC-----------------C-------HHHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcc
Confidence 9997743 2 3356778899999999986531 2445555544
Q ss_pred ----CCCEE
Q 022677 274 ----QIPTI 278 (293)
Q Consensus 274 ----~iPtI 278 (293)
++|+|
T Consensus 161 ~~~~~iPVi 169 (320)
T cd04743 161 DKAGKIHLL 169 (320)
T ss_pred cccCCccEE
Confidence 79988
No 61
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.44 E-value=0.043 Score=50.78 Aligned_cols=133 Identities=21% Similarity=0.268 Sum_probs=86.7
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCC-CCccCCHHHHHHHHHHHHcccCC--Ce-EEe--eCCCCCCCCCHHHHHHHHHH
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHD-TTLPITLEEMLVHCRAVARGAKR--PL-LVG--DLPFGTYESSTNQAVDTAVR 178 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~-dt~~vtl~eml~h~raV~Ra~~~--p~-vva--DmpfGsy~~s~e~av~~A~r 178 (293)
++...++|++.|.+-|...---.|+- .-..++.+|++...++++.+.+. .| |++ |--..+ ..+.+++++-+..
T Consensus 90 v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~-~~~~~eai~Ra~a 168 (243)
T cd00377 90 VRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAG-EEGLDEAIERAKA 168 (243)
T ss_pred HHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhcc-CCCHHHHHHHHHH
Confidence 45566799999999887643333332 23567999999999999998764 44 444 443222 1368999999877
Q ss_pred HHHHhCCCEEEeCCCCCCcHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEE
Q 022677 179 ILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (293)
Q Consensus 179 l~keaGa~gVkiEgg~~~~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~Iv 257 (293)
.. ++|||+|.+++-. ..+.+++++++ .+|++-. ..++++ .-....+++.|...+.
T Consensus 169 y~-~AGAD~v~v~~~~--~~~~~~~~~~~~~~Pl~~~---------~~~~~~------------~~~~~~l~~lG~~~v~ 224 (243)
T cd00377 169 YA-EAGADGIFVEGLK--DPEEIRAFAEAPDVPLNVN---------MTPGGN------------LLTVAELAELGVRRVS 224 (243)
T ss_pred HH-HcCCCEEEeCCCC--CHHHHHHHHhcCCCCEEEE---------ecCCCC------------CCCHHHHHHCCCeEEE
Confidence 65 7999999999754 24556667654 5666633 122211 1134556777887777
Q ss_pred ecCCC
Q 022677 258 LECVP 262 (293)
Q Consensus 258 lE~vp 262 (293)
...-.
T Consensus 225 ~~~~~ 229 (243)
T cd00377 225 YGLAL 229 (243)
T ss_pred EChHH
Confidence 76543
No 62
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.39 E-value=0.072 Score=50.77 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=69.2
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCC----CccCCHHHHHHHHHHHHcc-cCCCe-EEeeCC--CCCCCCCHHHHHHHH
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDT----TLPITLEEMLVHCRAVARG-AKRPL-LVGDLP--FGTYESSTNQAVDTA 176 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~d----t~~vtl~eml~h~raV~Ra-~~~p~-vvaDmp--fGsy~~s~e~av~~A 176 (293)
.+..+++|+..|.+-|...--.-|+-. ...++.+||+...++++.+ .+..| |++=+. ..+. +.+++++-+
T Consensus 98 V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~--~~~eAi~Ra 175 (285)
T TIGR02320 98 VRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGK--GMEDALKRA 175 (285)
T ss_pred HHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccC--CHHHHHHHH
Confidence 566678999999998976443323221 2468999999999999876 33344 445433 2223 578999997
Q ss_pred HHHHHHhCCCEEEeCCCCCCcHHHHHHHHHc------CCcEEEe
Q 022677 177 VRILKEGGMDAIKLEGGSPSRITAARGIVEA------GIAVMGH 214 (293)
Q Consensus 177 ~rl~keaGa~gVkiEgg~~~~~~~ikal~~~------GIpV~GH 214 (293)
.+.. ++|||+|.++++... .+.++++.+. .+|++..
T Consensus 176 ~ay~-eAGAD~ifv~~~~~~-~~ei~~~~~~~~~~~p~~pl~~~ 217 (285)
T TIGR02320 176 EAYA-EAGADGIMIHSRKKD-PDEILEFARRFRNHYPRTPLVIV 217 (285)
T ss_pred HHHH-HcCCCEEEecCCCCC-HHHHHHHHHHhhhhCCCCCEEEe
Confidence 6655 899999999964322 2233444332 4677743
No 63
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=96.38 E-value=0.18 Score=47.45 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=96.7
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
-|+..+++|+|.|++-.-.-.-. ..+..+.+..-|-.-++.|++..+.| +-+++=+ .+...++. +-+..
T Consensus 34 ea~~l~~~GvDgiiveN~~D~Py--~~~~~~etvaaM~~i~~~v~~~~~~p-~GVnvL~----nd~~aala----iA~A~ 102 (254)
T PF03437_consen 34 EAEALEEGGVDGIIVENMGDVPY--PKRVGPETVAAMARIAREVRREVSVP-VGVNVLR----NDPKAALA----IAAAT 102 (254)
T ss_pred HHHHHHHCCCCEEEEecCCCCCc--cCCCCHHHHHHHHHHHHHHHHhCCCC-EEeeeec----CCCHHHHH----HHHHh
Confidence 58889999999999853222211 11134555667788888888887766 5566554 23345543 34468
Q ss_pred CCCEEEeCCCC---------C--CcHHH---HHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHH
Q 022677 184 GMDAIKLEGGS---------P--SRITA---ARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (293)
Q Consensus 184 Ga~gVkiEgg~---------~--~~~~~---ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~e 249 (293)
|++=|.+|.-. . ...++ .+.| .+.|++++- +.+.+...++ .++- ++..+ .+.+
T Consensus 103 ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l-~a~v~ilaD--V~~kh~~~l~-----~~~~---~~~~~--~a~~ 169 (254)
T PF03437_consen 103 GADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRL-GADVKILAD--VHVKHSSPLA-----TRDL---EEAAK--DAVE 169 (254)
T ss_pred CCCEEEecCEEceecccCccccccHHHHHHHHHHc-CCCeEEEee--echhhcccCC-----CCCH---HHHHH--HHHH
Confidence 99999987421 0 11122 2222 234777653 4555444442 3442 23332 3456
Q ss_pred HcCCcEEEecCC----C--HHHHHHHHHhcCCCEEEeCCCCC
Q 022677 250 EVGCFSVVLECV----P--PPVAAAATSALQIPTIGIGAGPF 285 (293)
Q Consensus 250 eAGA~~IvlE~v----p--~e~a~~It~~l~iPtIGIGaG~~ 285 (293)
..+||+|++-+- | .+.++++.+.+++|++ +|+|-.
T Consensus 170 ~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVl-vGSGvt 210 (254)
T PF03437_consen 170 RGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVL-VGSGVT 210 (254)
T ss_pred hcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEE-EecCCC
Confidence 799999999864 2 4778999999999999 888853
No 64
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.36 E-value=0.15 Score=49.00 Aligned_cols=128 Identities=23% Similarity=0.206 Sum_probs=83.1
Q ss_pred hccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC----------CC
Q 022677 126 VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG----------SP 195 (293)
Q Consensus 126 ~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg----------~~ 195 (293)
+.|+++ ...|+++...+.+.+..+.| +++.+ +| .+.++..+.+.++ +++|+++|-|--+ ..
T Consensus 78 ~~gl~n---~g~d~~~~~i~~~~~~~~~p-vi~sI-~g---~~~~e~~~~a~~~-~~agad~ielN~scpp~~~~~~g~~ 148 (334)
T PRK07565 78 EPAKFY---VGPEEYLELIRRAKEAVDIP-VIASL-NG---SSAGGWVDYARQI-EQAGADALELNIYYLPTDPDISGAE 148 (334)
T ss_pred hhhccC---cCHHHHHHHHHHHHHhcCCc-EEEEe-cc---CCHHHHHHHHHHH-HHcCCCEEEEeCCCCCCCCCCcccc
Confidence 456654 45899999888887766666 67777 22 3567777776664 5789999988211 00
Q ss_pred ---CcHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecC-CC--------
Q 022677 196 ---SRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC-VP-------- 262 (293)
Q Consensus 196 ---~~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~-vp-------- 262 (293)
...++++++.+. .+||..-+. | ++ .++.+-+++++++|||+|.+-. ++
T Consensus 149 ~~~~~~eil~~v~~~~~iPV~vKl~--p-------~~----------~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~ 209 (334)
T PRK07565 149 VEQRYLDILRAVKSAVSIPVAVKLS--P-------YF----------SNLANMAKRLDAAGADGLVLFNRFYQPDIDLET 209 (334)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEeC--C-------Cc----------hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhh
Confidence 123455666553 678875522 2 11 1355668899999999997632 11
Q ss_pred ------------------HHHHHHHHHhcCCCEEEeC
Q 022677 263 ------------------PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 263 ------------------~e~a~~It~~l~iPtIGIG 281 (293)
-+.+..+.+.+++|+||.|
T Consensus 210 ~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~G 246 (334)
T PRK07565 210 LEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATT 246 (334)
T ss_pred cccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEEC
Confidence 1345667788899999876
No 65
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.065 Score=49.41 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=77.1
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEee
Q 022677 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaD 159 (293)
++++|-+..+....|.|--|-..--+..|.++|||+|-+. ..||-+....+.+.=...++.+++ ++ .+|++-
T Consensus 115 ~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTT------LsGYT~~~~~~~~pDf~lvk~l~~-~~-~~vIAE 186 (229)
T COG3010 115 DLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGTT------LSGYTGYTEKPTEPDFQLVKQLSD-AG-CRVIAE 186 (229)
T ss_pred hHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEecc------cccccCCCCCCCCCcHHHHHHHHh-CC-CeEEee
Confidence 7888877777777899999999999999999999998764 578988666666666677788877 54 448887
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 160 mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
|.| .||+++ .+.+ +.||++|-+-+
T Consensus 187 ---Gr~-~tP~~A----k~a~-~~Ga~aVvVGs 210 (229)
T COG3010 187 ---GRY-NTPEQA----KKAI-EIGADAVVVGS 210 (229)
T ss_pred ---CCC-CCHHHH----HHHH-HhCCeEEEECc
Confidence 888 699998 5567 68999998844
No 66
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.35 E-value=0.91 Score=43.34 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=114.8
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEee
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAr----iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaD 159 (293)
|+..++++--+-..|+||..+++ .||+.+.++|+--.-. .+.| ..++.+...++..++..+.| |..-
T Consensus 8 l~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~---~~~~-----~~~~~~~~~~~~~a~~~~VP-ValH 78 (282)
T TIGR01858 8 LQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPG---TFKH-----AGTEYIVALCSAASTTYNMP-LALH 78 (282)
T ss_pred HHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcc---HHhh-----CCHHHHHHHHHHHHHHCCCC-EEEE
Confidence 44455667778899999999987 4678899999832111 1222 34777888889999888888 7777
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeeecCCc--cc
Q 022677 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGF--RP 230 (293)
Q Consensus 160 mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf--~v 230 (293)
|.-| .|.|.. .+.+ ++|..+|.+-+... ....+++..-..||.|=|=+|-++-.+...... ..
T Consensus 79 LDHg---~~~e~i----~~ai-~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~ 150 (282)
T TIGR01858 79 LDHH---ESLDDI----RQKV-HAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDA 150 (282)
T ss_pred CCCC---CCHHHH----HHHH-HcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchh
Confidence 7754 244444 4567 58999999976531 233556666788999988777444222110000 00
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEec-----C----CC---HHHHHHHHHhcCCCEEEeCCCCCCC
Q 022677 231 QGKNVTSAVKVVETALALQEVGCFSVVLE-----C----VP---PPVAAAATSALQIPTIGIGAGPFCS 287 (293)
Q Consensus 231 qGrt~~~a~e~l~rA~a~eeAGA~~IvlE-----~----vp---~e~a~~It~~l~iPtIGIGaG~~~d 287 (293)
.--+.++|.+.++ +-|+|+|=+= + -| -+..+.|.+.+++|+ .+-+|++.+
T Consensus 151 ~~T~peea~~Fv~------~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPL-VlHGgSG~~ 212 (282)
T TIGR01858 151 LYTDPQEAKEFVE------ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPL-VLHGASDVP 212 (282)
T ss_pred ccCCHHHHHHHHH------HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCe-EEecCCCCC
Confidence 0112234444333 5799987532 1 13 489999999999997 466666654
No 67
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.29 E-value=0.048 Score=49.40 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=60.4
Q ss_pred CCHHHHHHh-hhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 79 VTLTHLRQK-HKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 79 ~t~~~Lr~l-~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
.|+.+|-+. |++. .++|--|.++--|+.++++|||+|.+. ..||-.-..=.-.+ +...+.+++. +.| |+
T Consensus 79 ~~l~~li~~i~~~~-~l~MADist~ee~~~A~~~G~D~I~TT------LsGYT~~t~~~~pD-~~lv~~l~~~-~~p-vI 148 (192)
T PF04131_consen 79 ETLEELIREIKEKY-QLVMADISTLEEAINAAELGFDIIGTT------LSGYTPYTKGDGPD-FELVRELVQA-DVP-VI 148 (192)
T ss_dssp S-HHHHHHHHHHCT-SEEEEE-SSHHHHHHHHHTT-SEEE-T------TTTSSTTSTTSSHH-HHHHHHHHHT-TSE-EE
T ss_pred cCHHHHHHHHHHhC-cEEeeecCCHHHHHHHHHcCCCEEEcc------cccCCCCCCCCCCC-HHHHHHHHhC-CCc-Ee
Confidence 677666554 4445 899999999999999999999999874 45664332212122 2334555554 556 88
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 158 aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
+. |.| .+||++ .+.+ +.||.+|-+-
T Consensus 149 aE---Gri-~tpe~a----~~al-~~GA~aVVVG 173 (192)
T PF04131_consen 149 AE---GRI-HTPEQA----AKAL-ELGAHAVVVG 173 (192)
T ss_dssp EE---SS---SHHHH----HHHH-HTT-SEEEE-
T ss_pred ec---CCC-CCHHHH----HHHH-hcCCeEEEEC
Confidence 88 788 699999 5678 6999999873
No 68
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.28 E-value=1.1 Score=42.84 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=115.2
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCCHHHHHH----HHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCC
Q 022677 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (293)
Q Consensus 79 ~t~~~-Lr~l~~~g~pi~m~tayD~~SAri----ae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~ 153 (293)
+|+++ |+..++++--+-..|+||..+++. ||+.+.++|+--..... ....++.+...++..++..+.
T Consensus 4 v~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~--------~~~~~~~~~~~~~~~a~~~~V 75 (286)
T PRK12738 4 ISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTF--------KHIALEEIYALCSAYSTTYNM 75 (286)
T ss_pred CcHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchh--------hhCCHHHHHHHHHHHHHHCCC
Confidence 34444 444556666889999999999874 67889999984211111 124567777788888888888
Q ss_pred CeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeeecC
Q 022677 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISVLG 226 (293)
Q Consensus 154 p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lg 226 (293)
| |..-|.-| .+.+.. .+.+ ++|..+|.+-+... ....+++..-..||.|=|=+|-++..+.-..
T Consensus 76 P-ValHLDHg---~~~e~i----~~ai-~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~ 146 (286)
T PRK12738 76 P-LALHLDHH---ESLDDI----RRKV-HAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMS 146 (286)
T ss_pred C-EEEECCCC---CCHHHH----HHHH-HcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcc
Confidence 8 77777654 245544 4456 58999999976531 2335566667789999877774443221100
Q ss_pred Ccc--cccCCHHHHHHHHHHHHHHHHcCCcEEEecC---------CC---HHHHHHHHHhcCCCEEEeCCCCCCC
Q 022677 227 GFR--PQGKNVTSAVKVVETALALQEVGCFSVVLEC---------VP---PPVAAAATSALQIPTIGIGAGPFCS 287 (293)
Q Consensus 227 Gf~--vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~---------vp---~e~a~~It~~l~iPtIGIGaG~~~d 287 (293)
... ..=-+.++|.+.+ ++-|+|+|=+=- -| =+..+.|.+.+++|+ .+-+|+++.
T Consensus 147 ~~~~~~~~T~peea~~Fv------~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPL-VLHGgSG~~ 214 (286)
T PRK12738 147 VDAESAFLTDPQEAKRFV------ELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPL-VLHGASDVP 214 (286)
T ss_pred cccchhcCCCHHHHHHHH------HHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCE-EEeCCCCCC
Confidence 000 0001223333333 235999886432 23 388999999999997 566666653
No 69
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.25 E-value=0.088 Score=50.42 Aligned_cols=105 Identities=17% Similarity=0.253 Sum_probs=75.3
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCC-ccCCHHHHHHHHHHHHcccC-CCeEE---eeCCCCCCCCCHHHHHHHHHHH
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAK-RPLLV---GDLPFGTYESSTNQAVDTAVRI 179 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt-~~vtl~eml~h~raV~Ra~~-~p~vv---aDmpfGsy~~s~e~av~~A~rl 179 (293)
.+-.+++|+-.|.+-|...--.-|+..+ ..++.+||+...++++.+.. ..|++ .|--. . ...+++++-+.+.
T Consensus 99 V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~-~--~g~deAI~Ra~aY 175 (292)
T PRK11320 99 VKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALA-V--EGLDAAIERAQAY 175 (292)
T ss_pred HHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCccc-c--cCHHHHHHHHHHH
Confidence 5677899999999999875444566544 56799999999999988753 44555 45432 2 2579999998765
Q ss_pred HHHhCCCEEEeCCCCCCcHHHHHHHHH-cCCcEEEec
Q 022677 180 LKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHV 215 (293)
Q Consensus 180 ~keaGa~gVkiEgg~~~~~~~ikal~~-~GIpV~GHi 215 (293)
. ++|||+|.+|+-. ..+.++++++ ...|++..+
T Consensus 176 ~-eAGAD~ifi~~~~--~~~~i~~~~~~~~~Pl~~n~ 209 (292)
T PRK11320 176 V-EAGADMIFPEAMT--ELEMYRRFADAVKVPILANI 209 (292)
T ss_pred H-HcCCCEEEecCCC--CHHHHHHHHHhcCCCEEEEe
Confidence 5 7999999999854 2444666654 366776653
No 70
>PRK07475 hypothetical protein; Provisional
Probab=96.24 E-value=0.14 Score=47.42 Aligned_cols=146 Identities=24% Similarity=0.267 Sum_probs=79.0
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
.|+.++++|+|+|.++=.. +-+..+.+...++.|++. +....+....++...+
T Consensus 70 aa~~L~~~G~d~I~~~Cgt-----------------~~~~~~~l~~~~~VPv~~----------ss~~~v~~l~~~~~~~ 122 (245)
T PRK07475 70 AARELEAEGVRAITTSCGF-----------------LALFQRELAAALGVPVAT----------SSLLQVPLIQALLPAG 122 (245)
T ss_pred HHHHHHHcCCCEEEechHH-----------------HHHHHHHHHHHcCCCEec----------cHHHHHHHHHHhccCC
Confidence 6777889999999875211 122445566667777442 3344444322332111
Q ss_pred CCCEEEeCCCCCCcHHHHHHHHHcCCcE-E---Eeccccceeee--ec-CCcccccCCHHHHHHHHHHHHHHHH--cCCc
Q 022677 184 GMDAIKLEGGSPSRITAARGIVEAGIAV-M---GHVGLTPQAIS--VL-GGFRPQGKNVTSAVKVVETALALQE--VGCF 254 (293)
Q Consensus 184 Ga~gVkiEgg~~~~~~~ikal~~~GIpV-~---GHiGLtPq~~~--~l-gGf~vqGrt~~~a~e~l~rA~a~ee--AGA~ 254 (293)
.-.||---.+.. .. -+.+.++||+. . ...|+--|..- .+ ++ +..+..++..+++.+-++++.+ -||+
T Consensus 123 ~kIGILtt~~t~-l~--~~~l~~~Gi~~~~~~~~~~g~e~~~~~~~~I~~~-~~~~d~~~~~~~l~~~~~~l~~~~~~~d 198 (245)
T PRK07475 123 QKVGILTADASS-LT--PAHLLAVGVPPDTSSLPIAGLEEGGEFRRNILEN-RGELDNEAAEQEVVAAARALLERHPDIG 198 (245)
T ss_pred CeEEEEeCCchh-hh--HHHHHhCCCCCCCccccccCcccchHHHHHHhcc-cccccHHHHHHHHHHHHHHHHhhCCCCC
Confidence 222333333332 22 36788888862 2 22233222211 01 10 0011222223466777777764 4999
Q ss_pred EEEecCCC-HHHHHHHHHhcCCCEEEe
Q 022677 255 SVVLECVP-PPVAAAATSALQIPTIGI 280 (293)
Q Consensus 255 ~IvlE~vp-~e~a~~It~~l~iPtIGI 280 (293)
+|++||.. +..++.+.+.+++|++-+
T Consensus 199 aIvL~CTeLp~~~~~le~~~glPViDs 225 (245)
T PRK07475 199 AIVLECTNMPPYAAAIQRATGLPVFDI 225 (245)
T ss_pred EEEEcCcChHHHHHHHHHhcCCCEEeH
Confidence 99999987 567778888899999853
No 71
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=96.23 E-value=0.071 Score=49.35 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=66.4
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC--CC---CcHHHHHHH----HHcCCcEEEeccccceeeeecCCcc
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG--SP---SRITAARGI----VEAGIAVMGHVGLTPQAISVLGGFR 229 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg--~~---~~~~~ikal----~~~GIpV~GHiGLtPq~~~~lgGf~ 229 (293)
+.|+| ...+...-+..+.+.+ +.||++|++... .. .....++++ .+.|+|+.-++. +. |...
T Consensus 80 ~~~~g-~~~~~~~~~~~v~~al-~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~--~~-----Gvh~ 150 (258)
T TIGR01949 80 STSLS-PDPNDKRIVTTVEDAI-RMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMY--PR-----GPHI 150 (258)
T ss_pred CCCCC-CCCCcceeeeeHHHHH-HCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEe--cc-----Cccc
Confidence 66775 3222223334455667 689999999763 11 111222323 347999986422 21 1111
Q ss_pred cccCCHHHHHHHHHH-HHHHHHcCCcEEEecCCC-HHHHHHHHHhcCCCEEEeC
Q 022677 230 PQGKNVTSAVKVVET-ALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 230 vqGrt~~~a~e~l~r-A~a~eeAGA~~IvlE~vp-~e~a~~It~~l~iPtIGIG 281 (293)
.+ .+ .+.+++ ++...++|||.|...... .+.++.+++..++|+..||
T Consensus 151 ~~-~~----~~~~~~~~~~a~~~GADyikt~~~~~~~~l~~~~~~~~iPVva~G 199 (258)
T TIGR01949 151 DD-RD----PELVAHAARLGAELGADIVKTPYTGDIDSFRDVVKGCPAPVVVAG 199 (258)
T ss_pred cc-cc----HHHHHHHHHHHHHHCCCEEeccCCCCHHHHHHHHHhCCCcEEEec
Confidence 11 22 234555 688899999999998654 5888999998999998875
No 72
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.22 E-value=0.26 Score=45.73 Aligned_cols=120 Identities=12% Similarity=0.092 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC------------------CcH
Q 022677 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP------------------SRI 198 (293)
Q Consensus 137 l~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~------------------~~~ 198 (293)
.+.+-.....+. .+.| +++.+-+ .|+++.++.+..+. + ++++|-|--|.+ ...
T Consensus 54 ~~~i~~e~~~~~--~~~~-vivnv~~----~~~ee~~~~a~~v~-~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~ 124 (231)
T TIGR00736 54 NSYIIEQIKKAE--SRAL-VSVNVRF----VDLEEAYDVLLTIA-E-HADIIEINAHCRQPEITEIGIGQELLKNKELLK 124 (231)
T ss_pred HHHHHHHHHHHh--hcCC-EEEEEec----CCHHHHHHHHHHHh-c-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHH
Confidence 334444555553 3345 7888764 57899988776643 3 799988754321 134
Q ss_pred HHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC-------HHHHHHHHH
Q 022677 199 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP-------PPVAAAATS 271 (293)
Q Consensus 199 ~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp-------~e~a~~It~ 271 (293)
.+++++.+.++||.-=+.+ +-+. .+.++-|++++++|+|+|.+++.- -+.++.|.+
T Consensus 125 ~iv~av~~~~~PVsvKiR~--------------~~~~---~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~ 187 (231)
T TIGR00736 125 EFLTKMKELNKPIFVKIRG--------------NCIP---LDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE 187 (231)
T ss_pred HHHHHHHcCCCcEEEEeCC--------------CCCc---chHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH
Confidence 5667777777887643321 1111 356788999999999999998643 277899999
Q ss_pred hcC-CCEEEeCC
Q 022677 272 ALQ-IPTIGIGA 282 (293)
Q Consensus 272 ~l~-iPtIGIGa 282 (293)
.++ +|+||-|.
T Consensus 188 ~~~~ipIIgNGg 199 (231)
T TIGR00736 188 EFNDKIIIGNNS 199 (231)
T ss_pred hcCCCcEEEECC
Confidence 995 99988763
No 73
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.21 E-value=0.078 Score=50.87 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=74.9
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCC-ccCCHHHHHHHHHHHHcccCC-CeEE---eeCCCCCCCCCHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKR-PLLV---GDLPFGTYESSTNQAVDTAVR 178 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt-~~vtl~eml~h~raV~Ra~~~-p~vv---aDmpfGsy~~s~e~av~~A~r 178 (293)
+.+-.+++|+-.|.+-|...--.-|+-++ ..++.+||+...++++.+... +|++ .|-- ..+ ..+++++-+..
T Consensus 97 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~-~~~--g~deaI~Ra~a 173 (294)
T TIGR02319 97 ATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDAR-ESF--GLDEAIRRSRE 173 (294)
T ss_pred HHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEeccc-ccC--CHHHHHHHHHH
Confidence 35777899999999999865444565555 457999999999999887553 3555 4653 233 57899999876
Q ss_pred HHHHhCCCEEEeCCCCCCcHHHHHHHHHc-CCcEEEe
Q 022677 179 ILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGH 214 (293)
Q Consensus 179 l~keaGa~gVkiEgg~~~~~~~ikal~~~-GIpV~GH 214 (293)
.. ++|||+|.+|+-. ..+.++++++. ..|++.+
T Consensus 174 Y~-eAGAD~ifi~~~~--~~~ei~~~~~~~~~P~~~n 207 (294)
T TIGR02319 174 YV-AAGADCIFLEAML--DVEEMKRVRDEIDAPLLAN 207 (294)
T ss_pred HH-HhCCCEEEecCCC--CHHHHHHHHHhcCCCeeEE
Confidence 55 7999999999843 24446666654 4566554
No 74
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.20 E-value=0.54 Score=45.23 Aligned_cols=121 Identities=25% Similarity=0.237 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC-------------CCcHHHHH
Q 022677 136 TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------------PSRITAAR 202 (293)
Q Consensus 136 tl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~-------------~~~~~~ik 202 (293)
.+|.++...+...+..+.| +++.+ +| .++++-.+.+.+ +++.|+|++-|--+. +...++++
T Consensus 83 g~~~~~~~i~~~~~~~~~p-vi~si-~g---~~~~~~~~~a~~-~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~ 156 (325)
T cd04739 83 GPEEYLELIRRAKRAVSIP-VIASL-NG---VSAGGWVDYARQ-IEEAGADALELNIYALPTDPDISGAEVEQRYLDILR 156 (325)
T ss_pred CHHHHHHHHHHHHhccCCe-EEEEe-CC---CCHHHHHHHHHH-HHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHH
Confidence 5778887777766555566 66666 33 366766666655 557899998664321 01134556
Q ss_pred HHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC-------------------
Q 022677 203 GIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP------------------- 262 (293)
Q Consensus 203 al~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp------------------- 262 (293)
++++. .+||.-= |+|. ..++.+-+++++++|||+|.+-.-.
T Consensus 157 ~v~~~~~iPv~vK--l~p~-----------------~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glS 217 (325)
T cd04739 157 AVKSAVTIPVAVK--LSPF-----------------FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLS 217 (325)
T ss_pred HHHhccCCCEEEE--cCCC-----------------ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcC
Confidence 66543 5677633 2221 1246777888999999999986421
Q ss_pred --------HHHHHHHHHhcCCCEEEeC
Q 022677 263 --------PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 263 --------~e~a~~It~~l~iPtIGIG 281 (293)
-+.+.++.+.+++|+||.|
T Consensus 218 G~~~~~~al~~v~~v~~~~~ipIig~G 244 (325)
T cd04739 218 SPAEIRLPLRWIAILSGRVKASLAASG 244 (325)
T ss_pred CccchhHHHHHHHHHHcccCCCEEEEC
Confidence 1345677888899999877
No 75
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.17 E-value=0.2 Score=48.14 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=90.3
Q ss_pred EEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHH
Q 022677 96 MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDT 175 (293)
Q Consensus 96 m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~ 175 (293)
|.+.=|.+.-+++.+.|.|++.+- .+.+..+-+.+ + ....+....--+.| +++-+ ++.++++..+.
T Consensus 17 M~g~td~~fR~l~~~~g~~~~~te-mvs~~~~~~~~-------~-~~~~~~~~~~~~~~-~~vQl----~g~~~~~~~~a 82 (321)
T PRK10415 17 MAGITDRPFRTLCYEMGAGLTVSE-MMSSNPQVWES-------D-KSRLRMVHIDEPGI-RTVQI----AGSDPKEMADA 82 (321)
T ss_pred CCCCCcHHHHHHHHHHCCCEEEEc-cEEcchhhhcC-------H-hHHHHhccCccCCC-EEEEE----eCCCHHHHHHH
Confidence 447788999999999999887653 12111111110 0 11111111112234 44554 33578888887
Q ss_pred HHHHHHHhCCCEEEeCCCCC------------------CcHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHH
Q 022677 176 AVRILKEGGMDAIKLEGGSP------------------SRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVT 236 (293)
Q Consensus 176 A~rl~keaGa~gVkiEgg~~------------------~~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~ 236 (293)
|..+ ++.|+++|.|--|.+ ....++++++++ ++||---+ -.|+ +.
T Consensus 83 a~~~-~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKi---------R~G~-----~~- 146 (321)
T PRK10415 83 ARIN-VESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKI---------RTGW-----AP- 146 (321)
T ss_pred HHHH-HHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEE---------Eccc-----cC-
Confidence 7554 578999999876642 122333333331 33332111 1122 21
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecCCC----------HHHHHHHHHhcCCCEEEeCC
Q 022677 237 SAVKVVETALALQEVGCFSVVLECVP----------PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 237 ~a~e~l~rA~a~eeAGA~~IvlE~vp----------~e~a~~It~~l~iPtIGIGa 282 (293)
+-.+.++-++.++++|++.|.+.+.. -+.+++|.+++++|+|+-|.
T Consensus 147 ~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGg 202 (321)
T PRK10415 147 EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD 202 (321)
T ss_pred CcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCC
Confidence 12356778888999999999887542 26778999999999998774
No 76
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.10 E-value=0.12 Score=48.62 Aligned_cols=137 Identities=22% Similarity=0.211 Sum_probs=79.6
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
....++.+|++++-|. +---|....+-+.++.+.+. .+. .+.-++- |.| |.+||++.|.-.-+-.
T Consensus 25 ~~~ai~aSg~~ivTva-------~rR~~~~~~~~~~~~~~i~~----~~~-~~lpNTa-G~~--ta~eAv~~a~lare~~ 89 (248)
T cd04728 25 MKEAIEASGAEIVTVA-------LRRVNIGDPGGESFLDLLDK----SGY-TLLPNTA-GCR--TAEEAVRTARLAREAL 89 (248)
T ss_pred HHHHHHHhCCCEEEEE-------EEecccCCCCcchHHhhccc----cCC-EECCCCC-CCC--CHHHHHHHHHHHHHHh
Confidence 3455678899998652 11111111233344443321 111 1223333 444 8999999985444445
Q ss_pred CCCEEEeCC---CCCC---cHHH---HHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCc
Q 022677 184 GMDAIKLEG---GSPS---RITA---ARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCF 254 (293)
Q Consensus 184 Ga~gVkiEg---g~~~---~~~~---ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~ 254 (293)
|-+-||||- .... .... .+.|++.|+.|+--+ ..+ +..|++++++||+
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc----------------~dd-------~~~ar~l~~~G~~ 146 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYC----------------TDD-------PVLAKRLEDAGCA 146 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEe----------------CCC-------HHHHHHHHHcCCC
Confidence 889999993 2211 2233 344455577766321 112 4578999999999
Q ss_pred EEEe--c------CC-CHHHHHHHHHhcCCCEE
Q 022677 255 SVVL--E------CV-PPPVAAAATSALQIPTI 278 (293)
Q Consensus 255 ~Ivl--E------~v-p~e~a~~It~~l~iPtI 278 (293)
+|-. + ++ .++.++.|.+..++|+|
T Consensus 147 ~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI 179 (248)
T cd04728 147 AVMPLGSPIGSGQGLLNPYNLRIIIERADVPVI 179 (248)
T ss_pred EeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEE
Confidence 9943 1 22 36888999998899998
No 77
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.10 E-value=0.17 Score=46.55 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=91.0
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
.|+..++.|+|-+.+=|-=++ .|.++. ....+.|++.+..| +.+| |+. .|.|++ .+++ +.
T Consensus 37 ~a~~~~~~g~~~l~ivDLd~~--~g~~~n--------~~~i~~i~~~~~~p-v~vg---GGi-rs~edv----~~~l-~~ 96 (241)
T PRK14024 37 AALAWQRDGAEWIHLVDLDAA--FGRGSN--------RELLAEVVGKLDVK-VELS---GGI-RDDESL----EAAL-AT 96 (241)
T ss_pred HHHHHHHCCCCEEEEEecccc--CCCCcc--------HHHHHHHHHHcCCC-EEEc---CCC-CCHHHH----HHHH-HC
Confidence 566677899998865463222 243322 45567777777777 6666 667 577777 5667 68
Q ss_pred CCCEEEeCCCC-CCcHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC
Q 022677 184 GMDAIKLEGGS-PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV 261 (293)
Q Consensus 184 Ga~gVkiEgg~-~~~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v 261 (293)
||+-+.+ |.. ..-++.++.+.+. +=.+.- .| |-+ .+.++..|-+. .....++-++.++++|++.|.+-.+
T Consensus 97 Ga~kvvi-Gs~~l~~p~l~~~i~~~~~~~i~v--sl-d~~---~~~v~~~Gw~~-~~~~~~~~~~~l~~~G~~~iiv~~~ 168 (241)
T PRK14024 97 GCARVNI-GTAALENPEWCARVIAEHGDRVAV--GL-DVR---GHTLAARGWTR-DGGDLWEVLERLDSAGCSRYVVTDV 168 (241)
T ss_pred CCCEEEE-CchHhCCHHHHHHHHHHhhhhEEE--EE-EEe---ccEeccCCeee-cCccHHHHHHHHHhcCCCEEEEEee
Confidence 9998866 332 1224455555542 101110 00 111 01112223221 2246788888999999999998877
Q ss_pred C---------HHHHHHHHHhcCCCEEEeC
Q 022677 262 P---------PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 262 p---------~e~a~~It~~l~iPtIGIG 281 (293)
. -++++.+.+.+++|+|.=|
T Consensus 169 ~~~g~~~G~d~~~i~~i~~~~~ipviasG 197 (241)
T PRK14024 169 TKDGTLTGPNLELLREVCARTDAPVVASG 197 (241)
T ss_pred cCCCCccCCCHHHHHHHHhhCCCCEEEeC
Confidence 5 2888999999999999633
No 78
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.10 E-value=1.4 Score=42.18 Aligned_cols=184 Identities=11% Similarity=0.071 Sum_probs=115.9
Q ss_pred CCHHHH-HHhhhCCCcEEEEecCCHHHHHH----HHHcCCcEEE-ECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 022677 79 VTLTHL-RQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (293)
Q Consensus 79 ~t~~~L-r~l~~~g~pi~m~tayD~~SAri----ae~AG~Dail-vGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~ 152 (293)
+|++++ +..++++--+-..|+||..+++. ||+.+.++|+ ++.+. +.| ..++.+...++..++..+
T Consensus 4 v~~k~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~----~~~-----~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK09195 4 VSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGT----FSY-----AGTEYLLAIVSAAAKQYH 74 (284)
T ss_pred CcHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhH----Hhh-----CCHHHHHHHHHHHHHHCC
Confidence 344444 44556666788999999999874 6778999998 43221 222 335677888888888888
Q ss_pred CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeeec
Q 022677 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISVL 225 (293)
Q Consensus 153 ~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~l 225 (293)
.| |+.-+.-| . +.|.. .+.+ ++|..+|.+-+... ....+++..-..|+.|=|=+|-++-.+.-.
T Consensus 75 VP-V~lHLDHg-~--~~e~i----~~Ai-~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~ 145 (284)
T PRK09195 75 HP-LALHLDHH-E--KFDDI----AQKV-RSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDL 145 (284)
T ss_pred CC-EEEECCCC-C--CHHHH----HHHH-HcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCc
Confidence 88 66666654 2 44443 4566 58999999976531 233556666788999987777544222110
Q ss_pred --CCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec-----C-------CCHHHHHHHHHhcCCCEEEeCCCCCCC
Q 022677 226 --GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE-----C-------VPPPVAAAATSALQIPTIGIGAGPFCS 287 (293)
Q Consensus 226 --gGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE-----~-------vp~e~a~~It~~l~iPtIGIGaG~~~d 287 (293)
.+-...--+.+++.+.++ +-|+|++=+= + +.-++.+.|.+.+++|+ .+-+|+|+.
T Consensus 146 ~~~~~~~~~T~peea~~Fv~------~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPL-VLHGgSG~~ 214 (284)
T PRK09195 146 QVDEADALYTDPAQAREFVE------ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPL-VLHGASGLP 214 (284)
T ss_pred ccccccccCCCHHHHHHHHH------HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCe-EEecCCCCC
Confidence 000011123344444443 5689987532 1 22489999999999997 466666653
No 79
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.01 E-value=0.39 Score=44.65 Aligned_cols=95 Identities=21% Similarity=0.171 Sum_probs=58.0
Q ss_pred CCcEEE-EecCCH----HHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCC
Q 022677 91 GEPITM-VTAYDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY 165 (293)
Q Consensus 91 g~pi~m-~tayD~----~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy 165 (293)
+.|+.. +...|. -.|+.++++|+|+|-+--+.-....| .+ ..-..+.+.+.+++|++.++.| |.+-+..+
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~-~~-~~~~~~~~~eiv~~vr~~~~~p-v~vKl~~~-- 172 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGG-RQ-LGQDPEAVANLLKAVKAAVDIP-LLVKLSPY-- 172 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-cc-cccCHHHHHHHHHHHHHccCCC-EEEEeCCC--
Confidence 455543 555443 44777888899999542221111111 11 1224456667778888877777 77777742
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 166 ESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 166 ~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
.+.++..+.+..+. ++|+|+|.+-+
T Consensus 173 -~~~~~~~~~a~~l~-~~Gad~i~~~~ 197 (289)
T cd02810 173 -FDLEDIVELAKAAE-RAGADGLTAIN 197 (289)
T ss_pred -CCHHHHHHHHHHHH-HcCCCEEEEEc
Confidence 35677777766554 79999999864
No 80
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=96.00 E-value=0.15 Score=47.43 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=100.4
Q ss_pred cCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 78 ~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
.+|...|+++.. + .+..-+++...+.+|+|.-|-+.+.+..| .+++....++ ...+.|
T Consensus 46 ~vt~e~L~~m~~--~-------l~~aa~~ll~~a~~dvi~~~cTsgs~~~G--------~~~~~~~i~~--~~~g~p--- 103 (239)
T TIGR02990 46 PTTPENLRKMQP--R-------LTEAAALILPDEELDVVAYSCTSASVVIG--------DDEVTRAINA--AKPGTP--- 103 (239)
T ss_pred CCCHHHHHHHhh--h-------HHHHHHHhcCCCCCCEEEEccchhheecC--------HHHHHHHHHh--cCCCCC---
Confidence 678888888742 1 11222444455899999876666665777 2343333322 122233
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC--CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCH
Q 022677 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNV 235 (293)
Q Consensus 158 aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~--~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~ 235 (293)
. .++..|+-.| +++-|+.=|-+---. +.....++.+.++||.|..+.++.- ..++. +++.+
T Consensus 104 ----~----tt~~~A~~~A---L~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~-----~~~~~-ia~i~ 166 (239)
T TIGR02990 104 ----V----VTPSSAAVDG---LAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGL-----TDDRE-MARIS 166 (239)
T ss_pred ----e----eCHHHHHHHH---HHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCC-----CCCce-eeecC
Confidence 1 3556666544 445588877775421 1133567778999999987654322 11222 45442
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCCC---HHHHHHHHHhcCCCEEE
Q 022677 236 TSAVKVVETALALQEVGCFSVVLECVP---PPVAAAATSALQIPTIG 279 (293)
Q Consensus 236 ~~a~e~l~rA~a~eeAGA~~IvlE~vp---~e~a~~It~~l~iPtIG 279 (293)
-+.+++-++++...+||+||+-|.- -+++..+-+++++|++.
T Consensus 167 --p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVls 211 (239)
T TIGR02990 167 --PDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVT 211 (239)
T ss_pred --HHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEE
Confidence 2355666666778999999999975 49999999999999984
No 81
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=95.94 E-value=0.034 Score=51.64 Aligned_cols=131 Identities=21% Similarity=0.202 Sum_probs=83.7
Q ss_pred HHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCC--CeEEeeCCCCC-CCCCHHHHHHHHHH
Q 022677 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR--PLLVGDLPFGT-YESSTNQAVDTAVR 178 (293)
Q Consensus 102 ~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~--p~vvaDmpfGs-y~~s~e~av~~A~r 178 (293)
+-+.+-.+++|+..|.+-|. ..|++....++.+||+...|+++++... -||++=+.--. .+...+++++-+..
T Consensus 88 ~~tv~~~~~aG~agi~IEDq----~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~a 163 (238)
T PF13714_consen 88 ARTVRELERAGAAGINIEDQ----RCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKA 163 (238)
T ss_dssp HHHHHHHHHCT-SEEEEESB----STTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEeecc----ccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHH
Confidence 34667788999999999999 3456888899999999999999887643 45555444200 12467899998866
Q ss_pred HHHHhCCCEEEeCCCCCCcHHHHHHHH-HcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEE
Q 022677 179 ILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (293)
Q Consensus 179 l~keaGa~gVkiEgg~~~~~~~ikal~-~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~Iv 257 (293)
.. ++|||+|.+|+-.. ..+ +++++ +-+.|++-..+ | .+ -..+.|++.|...+.
T Consensus 164 Y~-eAGAD~ifi~~~~~-~~~-i~~~~~~~~~Pl~v~~~--~-------------~~--------~~~~eL~~lGv~~v~ 217 (238)
T PF13714_consen 164 YA-EAGADMIFIPGLQS-EEE-IERIVKAVDGPLNVNPG--P-------------GT--------LSAEELAELGVKRVS 217 (238)
T ss_dssp HH-HTT-SEEEETTSSS-HHH-HHHHHHHHSSEEEEETT--S-------------SS--------S-HHHHHHTTESEEE
T ss_pred HH-HcCCCEEEeCCCCC-HHH-HHHHHHhcCCCEEEEcC--C-------------CC--------CCHHHHHHCCCcEEE
Confidence 55 79999999998642 233 44443 44566653221 1 01 245667788877777
Q ss_pred ecCCC
Q 022677 258 LECVP 262 (293)
Q Consensus 258 lE~vp 262 (293)
.....
T Consensus 218 ~~~~~ 222 (238)
T PF13714_consen 218 YGNSL 222 (238)
T ss_dssp ETSHH
T ss_pred EcHHH
Confidence 76544
No 82
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.92 E-value=0.58 Score=44.55 Aligned_cols=124 Identities=19% Similarity=0.284 Sum_probs=69.8
Q ss_pred hhCCCcE-EEEecCCH----HHHHHHHHcCCcEE-E-ECchhhhhhc-cCCCCccCCHHHHHHHHHHHHcccCCCeEEee
Q 022677 88 HKNGEPI-TMVTAYDY----PSAVHLDSAGIDIC-L-VGDSAAMVVH-GHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (293)
Q Consensus 88 ~~~g~pi-~m~tayD~----~SAriae~AG~Dai-l-vGdSla~~~l-G~~dt~~vtl~eml~h~raV~Ra~~~p~vvaD 159 (293)
+..+.|+ +-+...|. -.|+.++++|+|.| + .|....-..- |.-+...=..+.+.+-+++|++.++.| |.+-
T Consensus 59 ~~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~p-v~vK 137 (319)
T TIGR00737 59 AEDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIP-VTVK 137 (319)
T ss_pred CCccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCC-EEEE
Confidence 3445666 66676666 45667788999999 4 3432111111 111111114566677888888888888 5554
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC-------CCcHHHHHHHHH-cCCcEEEe
Q 022677 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------PSRITAARGIVE-AGIAVMGH 214 (293)
Q Consensus 160 mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~-------~~~~~~ikal~~-~GIpV~GH 214 (293)
+.- ++..+..+.++.+.+ ++++|++.+.+-+.. ....+.++.+.+ .+|||++.
T Consensus 138 ir~-g~~~~~~~~~~~a~~-l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~n 198 (319)
T TIGR00737 138 IRI-GWDDAHINAVEAARI-AEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGN 198 (319)
T ss_pred EEc-ccCCCcchHHHHHHH-HHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEe
Confidence 432 232233345555544 457999999885421 012344555544 46888764
No 83
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.92 E-value=0.08 Score=49.24 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=60.8
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE--eeCC------------CCCCCCCHH
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV--GDLP------------FGTYESSTN 170 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv--aDmp------------fGsy~~s~e 170 (293)
++-..++|++.|-+-|.. |++...++++++. .+ |+ .|+- +|--..+.+
T Consensus 95 ~~~l~~aGa~gv~iED~~----------------~~~~~i~ai~~a~-i~-ViaRtd~~pq~~~~~gg~~~~~~~~~~~~ 156 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGE----------------WHIETLQMLTAAA-VP-VIAHTGLTPQSVNTSGGDEGQYRGDEAGE 156 (240)
T ss_pred HHHHHHcCCcEEEEcCcH----------------HHHHHHHHHHHcC-Ce-EEEEeCCchhhhhccCCceeeccCHHHHH
Confidence 455667999999887752 6777788886654 44 55 5551 221123466
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHc-CCcEEEe
Q 022677 171 QAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGH 214 (293)
Q Consensus 171 ~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~-GIpV~GH 214 (293)
++++-+..+. ++||++|.+|+-. .+.+++++++ .+|+.|.
T Consensus 157 ~ai~Ra~ay~-~AGAd~i~~e~~~---~e~~~~i~~~~~~P~~~~ 197 (240)
T cd06556 157 QLIADALAYA-PAGADLIVMECVP---VELAKQITEALAIPLAGI 197 (240)
T ss_pred HHHHHHHHHH-HcCCCEEEEcCCC---HHHHHHHHHhCCCCEEEE
Confidence 8888876655 8999999999652 5567777654 8899875
No 84
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=95.92 E-value=0.37 Score=45.26 Aligned_cols=154 Identities=22% Similarity=0.269 Sum_probs=91.5
Q ss_pred HHHHHHHHcCCcEEEECchhh-hhhccCCCCccCCHHHHHHHHHHHHccc-CCCeEE---eeCCCCCCCCCHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLV---GDLPFGTYESSTNQAVDTAV 177 (293)
Q Consensus 103 ~SAriae~AG~DailvGdSla-~~~lG~~dt~~vtl~eml~h~raV~Ra~-~~p~vv---aDmpfGsy~~s~e~av~~A~ 177 (293)
.-|+..+++|+|.|=+|.... .++++|-+..+ ++.+ +.+++.. +.++.. ++--. +|..-|.+..+.-+
T Consensus 25 ~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~--~e~i----~~~~~~~~~~~l~~~~r~~~~~-~~~~~p~~~~~~di 97 (275)
T cd07937 25 PIAEALDEAGFFSLEVWGGATFDVCMRFLNEDP--WERL----RELRKAMPNTPLQMLLRGQNLV-GYRHYPDDVVELFV 97 (275)
T ss_pred HHHHHHHHcCCCEEEccCCcchhhhccccCCCH--HHHH----HHHHHhCCCCceehhccccccc-CccCCCcHHHHHHH
Confidence 357889999999998775332 13455554432 3333 3333322 222222 22111 23223445555556
Q ss_pred HHHHHhCCCEEEeCCCCC---CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCc
Q 022677 178 RILKEGGMDAIKLEGGSP---SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCF 254 (293)
Q Consensus 178 rl~keaGa~gVkiEgg~~---~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~ 254 (293)
+...+.|++.|.+-.... ...+.++.+.+.|..++.++..+- -++. +.+.+++-++++.++||+
T Consensus 98 ~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~-----------~~~~--~~~~~~~~~~~~~~~Ga~ 164 (275)
T cd07937 98 EKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTG-----------SPVH--TLEYYVKLAKELEDMGAD 164 (275)
T ss_pred HHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecC-----------CCCC--CHHHHHHHHHHHHHcCCC
Confidence 666688999999987642 234567778899998887654211 0232 345778888889999999
Q ss_pred EEEec-----CCCH---HHHHHHHHhcCCC
Q 022677 255 SVVLE-----CVPP---PVAAAATSALQIP 276 (293)
Q Consensus 255 ~IvlE-----~vp~---e~a~~It~~l~iP 276 (293)
.|.+- +.|. ++++.+.+++++|
T Consensus 165 ~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~ 194 (275)
T cd07937 165 SICIKDMAGLLTPYAAYELVKALKKEVGLP 194 (275)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHhCCCe
Confidence 99986 2343 5566666777654
No 85
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.86 E-value=0.076 Score=49.87 Aligned_cols=90 Identities=26% Similarity=0.346 Sum_probs=63.6
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeE-----E--eeCCCCCCC---CC---HH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL-----V--GDLPFGTYE---SS---TN 170 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~v-----v--aDmpfGsy~---~s---~e 170 (293)
..|+.+++|+++|-+-|+ +||....+++++ ...|++ . .|.-+|+|- .+ .+
T Consensus 96 a~r~~~~aGa~aVkiEd~----------------~~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~ 158 (254)
T cd06557 96 AARLMKEAGADAVKLEGG----------------AEVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAE 158 (254)
T ss_pred HHHHHHHhCCeEEEEcCc----------------HHHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHHHHH
Confidence 367888899999988775 488888888876 345622 1 344455662 23 46
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHc-CCcEEEe
Q 022677 171 QAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGH 214 (293)
Q Consensus 171 ~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~-GIpV~GH 214 (293)
++++-|..+. ++||++|.+|+=. .+.+++++++ .||+.|=
T Consensus 159 ~~i~ra~a~~-~AGA~~i~lE~v~---~~~~~~i~~~v~iP~igi 199 (254)
T cd06557 159 RLLEDALALE-EAGAFALVLECVP---AELAKEITEALSIPTIGI 199 (254)
T ss_pred HHHHHHHHHH-HCCCCEEEEcCCC---HHHHHHHHHhCCCCEEEe
Confidence 7888876655 8999999999854 3567777654 7899873
No 86
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.86 E-value=0.31 Score=45.51 Aligned_cols=136 Identities=15% Similarity=0.051 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCcEEEE-CchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHH
Q 022677 102 YPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (293)
Q Consensus 102 ~~SAriae~AG~Dailv-GdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ 180 (293)
.-.|+..+++|+++|.+ .|.- -..=+ +...+.|++.++.|++.-| |-.++.|+ ....
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~---------~f~g~----~~~l~~v~~~v~iPvl~kd-----fi~~~~qi----~~a~ 130 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDER---------FFQGS----LEYLRAARAAVSLPVLRKD-----FIIDPYQI----YEAR 130 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccc---------cCCCC----HHHHHHHHHhcCCCEEeee-----ecCCHHHH----HHHH
Confidence 34577788999999965 1110 00001 4555778888899977666 43455554 2334
Q ss_pred HHhCCCEEEeCCCCC---CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEE
Q 022677 181 KEGGMDAIKLEGGSP---SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (293)
Q Consensus 181 keaGa~gVkiEgg~~---~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~Iv 257 (293)
++|||+|-+-.... ....+++...+.|..++ -+. .+.++ ++...++|++.|-
T Consensus 131 -~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~l--------vev---------h~~~E-------~~~A~~~gadiIg 185 (260)
T PRK00278 131 -AAGADAILLIVAALDDEQLKELLDYAHSLGLDVL--------VEV---------HDEEE-------LERALKLGAPLIG 185 (260)
T ss_pred -HcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEE--------EEe---------CCHHH-------HHHHHHcCCCEEE
Confidence 79999999976541 12233333344343332 111 12222 2334478999887
Q ss_pred ecC-------CCHHHHHHHHHhcC--CCEEEeCCCC
Q 022677 258 LEC-------VPPPVAAAATSALQ--IPTIGIGAGP 284 (293)
Q Consensus 258 lE~-------vp~e~a~~It~~l~--iPtIGIGaG~ 284 (293)
+-. +..+....+.+.++ +|+|.+|++.
T Consensus 186 in~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~ 221 (260)
T PRK00278 186 INNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIF 221 (260)
T ss_pred ECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 543 22355677777663 5888888774
No 87
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=95.85 E-value=0.27 Score=47.25 Aligned_cols=112 Identities=14% Similarity=0.084 Sum_probs=64.4
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEE--ECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC
Q 022677 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (293)
Q Consensus 83 ~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dail--vGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm 160 (293)
-|.++.+.| +.+-+-+.-.|+++|++|+|.+. +|=..=-+.-| .+.+-.=..+.++|++.++.| |++=.
T Consensus 11 g~a~m~kgg---vimdv~~~~~a~iae~~g~~~v~~~~~~psd~~~~g-----g~~Rm~~p~~I~aIk~~V~iP-Vigk~ 81 (293)
T PRK04180 11 GFAEMLKGG---VIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAG-----GVARMADPKMIEEIMDAVSIP-VMAKA 81 (293)
T ss_pred HHHHHhcCC---eEEEeCCHHHHHHHHHhChHHHHHccCCCchHhhcC-----CeeecCCHHHHHHHHHhCCCC-eEEee
Confidence 467777655 56777788999999999998873 33111111222 122211245566899999999 44333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCC---cHHHHHHHHHc-CCcEEEec
Q 022677 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS---RITAARGIVEA-GIAVMGHV 215 (293)
Q Consensus 161 pfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~---~~~~ikal~~~-GIpV~GHi 215 (293)
=-| | ..++ +.+.+.|+|.| |..+. ..+.+..+... ++|+|.-+
T Consensus 82 Rig-h---~~Ea-----~~L~~~GvDiI---D~Te~lrpad~~~~~~K~~f~~~fmad~ 128 (293)
T PRK04180 82 RIG-H---FVEA-----QILEALGVDYI---DESEVLTPADEEYHIDKWDFTVPFVCGA 128 (293)
T ss_pred hhh-H---HHHH-----HHHHHcCCCEE---eccCCCCchHHHHHHHHHHcCCCEEccC
Confidence 332 3 2344 44558999999 43321 22344444333 78887543
No 88
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.84 E-value=0.069 Score=54.65 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=64.2
Q ss_pred HHHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCeEEe
Q 022677 82 THLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLVG 158 (293)
Q Consensus 82 ~~Lr~l~~~--g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt-~~vtl~eml~h~raV~Ra~~~p~vva 158 (293)
..++.+++. +.+|++=|+-+.--|+.+.++|+|+|.||-.-+..+-....+ ...+...-++.+..+++..+.| |++
T Consensus 278 ~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vp-VIa 356 (505)
T PLN02274 278 EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVP-VIA 356 (505)
T ss_pred HHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCe-EEE
Confidence 344444332 345555589999999999999999998864333222222111 1112222355677788877777 999
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
| |++ .+.+++ .+.+ ..||++|.+=
T Consensus 357 d---GGI-~~~~di----~kAl-a~GA~~V~vG 380 (505)
T PLN02274 357 D---GGI-SNSGHI----VKAL-TLGASTVMMG 380 (505)
T ss_pred e---CCC-CCHHHH----HHHH-HcCCCEEEEc
Confidence 9 667 467777 4567 5899999983
No 89
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=95.83 E-value=0.33 Score=50.78 Aligned_cols=157 Identities=18% Similarity=0.227 Sum_probs=103.5
Q ss_pred HHHHHHHHcCCcEEEECchhhh-hhccCCCCccCCHHHHHHHHHHHHcccCCCeEE--eeCCCCCCCCCHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV--GDLPFGTYESSTNQAVDTAVRI 179 (293)
Q Consensus 103 ~SAriae~AG~DailvGdSla~-~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv--aDmpfGsy~~s~e~av~~A~rl 179 (293)
+-|...+++|+..+=++.+... ++++|-... +|+. +...|....-++.-++. .+++ +|..-+++.++.-++.
T Consensus 30 ~ia~~~d~~g~~siE~~gGatfd~~~rfl~ed--pwer-l~~~r~~~pnt~lqmL~Rg~N~v--Gy~~~~d~vv~~~v~~ 104 (596)
T PRK14042 30 PICNKMDDVGFWAMEVWGGATFDACLRFLKED--PWSR-LRQLRQALPNTQLSMLLRGQNLL--GYRNYADDVVRAFVKL 104 (596)
T ss_pred HHHHHHHhcCCCEEEeeCCcccceeecccCCC--HHHH-HHHHHHhCCCCceEEEecccccc--ccccCChHHHHHHHHH
Confidence 3577788999999955444433 466766554 3444 44444443334444344 4455 3555568888877787
Q ss_pred HHHhCCCEEEeCCCCCC---cHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEE
Q 022677 180 LKEGGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (293)
Q Consensus 180 ~keaGa~gVkiEgg~~~---~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~I 256 (293)
..+.|++.+.+=|.... ....++++.+.|..+.|-|-+|--. .-..+..++-++.++++||+.|
T Consensus 105 a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp-------------~~t~e~~~~~ak~l~~~Gad~I 171 (596)
T PRK14042 105 AVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSP-------------VHTLDNFLELGKKLAEMGCDSI 171 (596)
T ss_pred HHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCC-------------CCCHHHHHHHHHHHHHcCCCEE
Confidence 77899999999986422 3356788889999888765433211 1134677888999999999999
Q ss_pred EecC-----CC---HHHHHHHHHhcCCCE
Q 022677 257 VLEC-----VP---PPVAAAATSALQIPT 277 (293)
Q Consensus 257 vlE~-----vp---~e~a~~It~~l~iPt 277 (293)
.+-= .| .++.+.|.+++++|+
T Consensus 172 ~IkDtaG~l~P~~v~~lv~alk~~~~ipi 200 (596)
T PRK14042 172 AIKDMAGLLTPTVTVELYAGLKQATGLPV 200 (596)
T ss_pred EeCCcccCCCHHHHHHHHHHHHhhcCCEE
Confidence 9872 34 267777777888774
No 90
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=95.77 E-value=0.12 Score=48.33 Aligned_cols=102 Identities=27% Similarity=0.323 Sum_probs=63.9
Q ss_pred EEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC---CCCC------cHHHHHHHHHcCCcEEEeccccceeeeecC
Q 022677 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG---GSPS------RITAARGIVEAGIAVMGHVGLTPQAISVLG 226 (293)
Q Consensus 156 vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg---g~~~------~~~~ikal~~~GIpV~GHiGLtPq~~~~lg 226 (293)
+.-++- |.+ |.+||++.|.-.-+-.|-+-||||- .... .....+.|++.|..|+-.+-
T Consensus 65 lLPNTa-Gc~--tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~---------- 131 (247)
T PF05690_consen 65 LLPNTA-GCR--TAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCT---------- 131 (247)
T ss_dssp EEEE-T-T-S--SHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-----------
T ss_pred ECCcCC-CCC--CHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCC----------
Confidence 445554 445 8999999985444445899999993 2211 22345667888888885421
Q ss_pred CcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC---------HHHHHHHHHhcCCCEE---EeCCC
Q 022677 227 GFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP---------PPVAAAATSALQIPTI---GIGAG 283 (293)
Q Consensus 227 Gf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp---------~e~a~~It~~l~iPtI---GIGaG 283 (293)
+ + +--|++|+|+||-+|..=+-| .+.++.|.+++++|+| |||.-
T Consensus 132 --------~-D----~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~p 187 (247)
T PF05690_consen 132 --------D-D----PVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTP 187 (247)
T ss_dssp --------S------HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---SH
T ss_pred --------C-C----HHHHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCH
Confidence 1 1 336899999999999876544 5788999999999999 55543
No 91
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.75 E-value=0.19 Score=48.00 Aligned_cols=152 Identities=18% Similarity=0.175 Sum_probs=90.6
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCC-C--CccCCHHHHHHHHHHHHcccC-CCeEE---eeCCCCCCCCCHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHD-T--TLPITLEEMLVHCRAVARGAK-RPLLV---GDLPFGTYESSTNQAVDTA 176 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~-d--t~~vtl~eml~h~raV~Ra~~-~p~vv---aDmpfGsy~~s~e~av~~A 176 (293)
+.+-.+++|+-.|-+-|...--.-|+. + -..++.+||....++++.+.. ..|++ .|.-+.+. ..+++++-+
T Consensus 95 tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~--g~deAI~Ra 172 (290)
T TIGR02321 95 VVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL--GQQEAVRRG 172 (290)
T ss_pred HHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccC--CHHHHHHHH
Confidence 356778999999999997644344543 2 245899999999999887643 34555 46543233 468999997
Q ss_pred HHHHHHhCCCEEEeCCCCCCcHHHHHHHHHc--C-CcEEEeccccce----eeeecCCccc--ccCCHHH-HHHHH-HHH
Q 022677 177 VRILKEGGMDAIKLEGGSPSRITAARGIVEA--G-IAVMGHVGLTPQ----AISVLGGFRP--QGKNVTS-AVKVV-ETA 245 (293)
Q Consensus 177 ~rl~keaGa~gVkiEgg~~~~~~~ikal~~~--G-IpV~GHiGLtPq----~~~~lgGf~v--qGrt~~~-a~e~l-~rA 245 (293)
.... ++|||+|.+|++.. ..+.++++++. + +|++-.-|-+|. ....+|+|.+ .|.+.-. +...+ +-+
T Consensus 173 ~aY~-eAGAD~ifv~~~~~-~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~aa~~a~~~~~ 250 (290)
T TIGR02321 173 QAYE-EAGADAILIHSRQK-TPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRAAVGAVREVF 250 (290)
T ss_pred HHHH-HcCCCEEEecCCCC-CHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHHHHHHHHHHHHHH
Confidence 6655 79999999997521 24445666652 2 577533233342 2234554544 3433222 23333 334
Q ss_pred HHHHHcCCcEEEec
Q 022677 246 LALQEVGCFSVVLE 259 (293)
Q Consensus 246 ~a~eeAGA~~IvlE 259 (293)
..+.+.|-+.=+.+
T Consensus 251 ~~i~~~g~~~~~~~ 264 (290)
T TIGR02321 251 ARIRRDGGIREVDA 264 (290)
T ss_pred HHHHHcCCcccccc
Confidence 55556665433333
No 92
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=95.75 E-value=1.2 Score=39.71 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=72.8
Q ss_pred HHHhhhCCCcE-EEEecCCHH----HHHHHHHcCCcEEE--ECchhhhh-hccCCCCccCCHHHHHHHHHHHHcccCCCe
Q 022677 84 LRQKHKNGEPI-TMVTAYDYP----SAVHLDSAGIDICL--VGDSAAMV-VHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (293)
Q Consensus 84 Lr~l~~~g~pi-~m~tayD~~----SAriae~AG~Dail--vGdSla~~-~lG~~dt~~vtl~eml~h~raV~Ra~~~p~ 155 (293)
+...+..+.|+ +-++..|.- .|+.+.++|+|.|= .|-..... .-+|-....=..+.+.+.+++|++..+.|
T Consensus 47 ~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~- 125 (231)
T cd02801 47 LLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIP- 125 (231)
T ss_pred hhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCC-
Confidence 33444555565 445666654 78888899999994 33211111 11222222235566777788888777756
Q ss_pred EEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC-------CCcHHHHHHHHH-cCCcEEEe
Q 022677 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------PSRITAARGIVE-AGIAVMGH 214 (293)
Q Consensus 156 vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~-------~~~~~~ikal~~-~GIpV~GH 214 (293)
+.+++..| +... +++.+.+.+ +++.|++.|.+-+.. ....+.++.+.+ ..||+++.
T Consensus 126 v~vk~r~~-~~~~-~~~~~~~~~-l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~ 189 (231)
T cd02801 126 VTVKIRLG-WDDE-EETLELAKA-LEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIAN 189 (231)
T ss_pred EEEEEeec-cCCc-hHHHHHHHH-HHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEe
Confidence 67777653 4322 456665544 457899999775531 012344555554 36777754
No 93
>PRK00208 thiG thiazole synthase; Reviewed
Probab=95.74 E-value=0.21 Score=46.98 Aligned_cols=136 Identities=21% Similarity=0.218 Sum_probs=79.0
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
....++.+|++++-|. +---|... +-+.++.+.+. .+.. +.-++- |.+ |.+||++.|.-.-+-.
T Consensus 26 ~~~ai~asg~~ivTva-------lrR~~~~~-~~~~~~~~i~~----~~~~-~lpNTa-G~~--ta~eAv~~a~lare~~ 89 (250)
T PRK00208 26 MQEAIEASGAEIVTVA-------LRRVNLGQ-GGDNLLDLLPP----LGVT-LLPNTA-GCR--TAEEAVRTARLAREAL 89 (250)
T ss_pred HHHHHHHhCCCeEEEE-------EEeecCCC-CcchHHhhccc----cCCE-ECCCCC-CCC--CHHHHHHHHHHHHHHh
Confidence 4566788899999663 11111100 22444444331 1111 222333 444 8999999985444445
Q ss_pred CCCEEEeCC---CCC---CcHHHHH---HHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCc
Q 022677 184 GMDAIKLEG---GSP---SRITAAR---GIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCF 254 (293)
Q Consensus 184 Ga~gVkiEg---g~~---~~~~~ik---al~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~ 254 (293)
|-+-||||- ... .....++ .|++.|..|+--+ ..+ +..|++++++||+
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc----------------~~d-------~~~ak~l~~~G~~ 146 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYC----------------TDD-------PVLAKRLEEAGCA 146 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEe----------------CCC-------HHHHHHHHHcCCC
Confidence 789999993 221 1223333 3444477665221 112 5578999999999
Q ss_pred EEEe--c------CC-CHHHHHHHHHhcCCCEE
Q 022677 255 SVVL--E------CV-PPPVAAAATSALQIPTI 278 (293)
Q Consensus 255 ~Ivl--E------~v-p~e~a~~It~~l~iPtI 278 (293)
+|-. | ++ .++.++.|.+..++|+|
T Consensus 147 ~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVI 179 (250)
T PRK00208 147 AVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVI 179 (250)
T ss_pred EeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEE
Confidence 9943 1 22 26888999998899998
No 94
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.72 E-value=1 Score=42.10 Aligned_cols=89 Identities=22% Similarity=0.257 Sum_probs=52.9
Q ss_pred EEEEecCC----HHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCH
Q 022677 94 ITMVTAYD----YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (293)
Q Consensus 94 i~m~tayD----~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~ 169 (293)
++-++..| .-.|+.++++|+|+|=+--+.-..- +..+...-+.+.+.+.+++|++.++.| |.+-+.. ..
T Consensus 93 ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~-~~g~~~~~~~~~~~eiv~~vr~~~~~P-v~vKl~~-~~---- 165 (296)
T cd04740 93 IASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK-GGGMAFGTDPEAVAEIVKAVKKATDVP-VIVKLTP-NV---- 165 (296)
T ss_pred EEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC-CCcccccCCHHHHHHHHHHHHhccCCC-EEEEeCC-Cc----
Confidence 35555554 4567788899999994422211111 111112235577778888898888778 5555643 22
Q ss_pred HHHHHHHHHHHHHhCCCEEEe
Q 022677 170 NQAVDTAVRILKEGGMDAIKL 190 (293)
Q Consensus 170 e~av~~A~rl~keaGa~gVki 190 (293)
++..+.+..+ +++|+|+|.+
T Consensus 166 ~~~~~~a~~~-~~~G~d~i~~ 185 (296)
T cd04740 166 TDIVEIARAA-EEAGADGLTL 185 (296)
T ss_pred hhHHHHHHHH-HHcCCCEEEE
Confidence 3455555444 4799999976
No 95
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.70 E-value=0.4 Score=42.83 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=75.5
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
.|+..+++|+++|-+=|--... .. + ....+.|++.++.|+++.| |-.+++++ +...++
T Consensus 36 ~A~~~~~~GA~~l~v~~~~~~~-----~g---~----~~~~~~i~~~v~iPi~~~~-----~i~~~~~v-----~~~~~~ 93 (217)
T cd00331 36 IAKAYEKAGAAAISVLTEPKYF-----QG---S----LEDLRAVREAVSLPVLRKD-----FIIDPYQI-----YEARAA 93 (217)
T ss_pred HHHHHHHcCCCEEEEEeCcccc-----CC---C----HHHHHHHHHhcCCCEEECC-----eecCHHHH-----HHHHHc
Confidence 5777889999999543221111 01 1 2455667666788966543 43555554 334479
Q ss_pred CCCEEEeCCCCCCcHHHHHHH----HHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 022677 184 GMDAIKLEGGSPSRITAARGI----VEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (293)
Q Consensus 184 Ga~gVkiEgg~~~~~~~ikal----~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE 259 (293)
||++|.+-. .....+.++.+ ...|+..+ -.. .+ +++++...+.|++.+-+-
T Consensus 94 Gad~v~l~~-~~~~~~~~~~~~~~~~~~g~~~~--------v~v---------~~-------~~e~~~~~~~g~~~i~~t 148 (217)
T cd00331 94 GADAVLLIV-AALDDEQLKELYELARELGMEVL--------VEV---------HD-------EEELERALALGAKIIGIN 148 (217)
T ss_pred CCCEEEEee-ccCCHHHHHHHHHHHHHcCCeEE--------EEE---------CC-------HHHHHHHHHcCCCEEEEe
Confidence 999999732 21111223333 33333331 000 12 223666777899988543
Q ss_pred C-------CCHHHHHHHHHhc--CCCEEEeCCCC
Q 022677 260 C-------VPPPVAAAATSAL--QIPTIGIGAGP 284 (293)
Q Consensus 260 ~-------vp~e~a~~It~~l--~iPtIGIGaG~ 284 (293)
. ..-+..+.+.+.+ ++|++.+|...
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~ 182 (217)
T cd00331 149 NRDLKTFEVDLNTTERLAPLIPKDVILVSESGIS 182 (217)
T ss_pred CCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCC
Confidence 1 2236678888875 58999887764
No 96
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.70 E-value=2.1 Score=40.97 Aligned_cols=185 Identities=12% Similarity=0.097 Sum_probs=114.7
Q ss_pred CCHHHHH-HhhhCCCcEEEEecCCHHHHH----HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCC
Q 022677 79 VTLTHLR-QKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (293)
Q Consensus 79 ~t~~~Lr-~l~~~g~pi~m~tayD~~SAr----iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~ 153 (293)
+|++++. .-++++--+-..|+||..+++ .||+.+.++|+--.-...-. ..++.+...++..++..+.
T Consensus 4 v~~~~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~--------~g~~~~~~~~~~~a~~~~V 75 (284)
T PRK12737 4 ISTKNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSY--------AGTDYIVAIAEVAARKYNI 75 (284)
T ss_pred CcHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhh--------CCHHHHHHHHHHHHHHCCC
Confidence 3444444 444556678889999999987 46778999998322211111 2355667778888888888
Q ss_pred CeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeeecC
Q 022677 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISVLG 226 (293)
Q Consensus 154 p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lg 226 (293)
| |..-+.-| . +.+.. .+.+ +.|..+|.+-+... ....+++..-..|+.|=|=+|-++-.+....
T Consensus 76 P-ValHLDH~-~--~~e~i----~~ai-~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~ 146 (284)
T PRK12737 76 P-LALHLDHH-E--DLDDI----KKKV-RAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLV 146 (284)
T ss_pred C-EEEECCCC-C--CHHHH----HHHH-HcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcc
Confidence 8 66666654 2 44444 4567 58999999976531 2335566667889999777764432221100
Q ss_pred Ccc--cccCCHHHHHHHHHHHHHHHHcCCcEEEecC---------CC---HHHHHHHHHhcCCCEEEeCCCCCCC
Q 022677 227 GFR--PQGKNVTSAVKVVETALALQEVGCFSVVLEC---------VP---PPVAAAATSALQIPTIGIGAGPFCS 287 (293)
Q Consensus 227 Gf~--vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~---------vp---~e~a~~It~~l~iPtIGIGaG~~~d 287 (293)
+.- ..=-+.++|.+.+++ -|+|+|=+=- -| -+..+.|.+.+++|+ .+-+|++++
T Consensus 147 ~~~~~~~~T~peeA~~Fv~~------TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPL-VlHGgSG~~ 214 (284)
T PRK12737 147 VDEKDAMYTNPDAAAEFVER------TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPL-VLHGASGVP 214 (284)
T ss_pred cccccccCCCHHHHHHHHHH------hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCE-EEeCCCCCC
Confidence 000 001233455555444 6999875421 23 488999999999997 577777654
No 97
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.69 E-value=0.15 Score=47.18 Aligned_cols=78 Identities=24% Similarity=0.277 Sum_probs=60.9
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCC-CCCCCHHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfG-sy~~s~e~av~~A~rl~ke 182 (293)
-|+.++++|+|.+++- -|.....+-++++.|.++|+.+++.|+++=|.|.- ++..+++.. .++.+-
T Consensus 84 ~a~~a~~~Gad~v~v~---------pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~----~~L~~~ 150 (281)
T cd00408 84 LARHAEEAGADGVLVV---------PPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETI----ARLAEH 150 (281)
T ss_pred HHHHHHHcCCCEEEEC---------CCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHH----HHHhcC
Confidence 3577889999999884 23344467899999999999999999999999952 466787766 355544
Q ss_pred hCCCEEEeCCCC
Q 022677 183 GGMDAIKLEGGS 194 (293)
Q Consensus 183 aGa~gVkiEgg~ 194 (293)
-.+.|||.+.+.
T Consensus 151 ~~v~giK~s~~d 162 (281)
T cd00408 151 PNIVGIKDSSGD 162 (281)
T ss_pred CCEEEEEeCCCC
Confidence 589999998864
No 98
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=95.69 E-value=0.28 Score=44.07 Aligned_cols=151 Identities=19% Similarity=0.235 Sum_probs=82.5
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
.|+..++.|+|.+.+=| +-....|.+ .. +...+.+++.++.|+.+.+ +. .+.+++ .+++ +.
T Consensus 33 ~a~~~~~~g~~~l~v~d-l~~~~~g~~----~~----~~~i~~i~~~~~~pi~~gg----GI-~~~ed~----~~~~-~~ 93 (230)
T TIGR00007 33 AAKKWEEEGAERIHVVD-LDGAKEGGP----VN----LPVIKKIVRETGVPVQVGG----GI-RSLEDV----EKLL-DL 93 (230)
T ss_pred HHHHHHHcCCCEEEEEe-CCccccCCC----Cc----HHHHHHHHHhcCCCEEEeC----Cc-CCHHHH----HHHH-Hc
Confidence 45666889999997622 222212322 22 3344666666778866644 45 466776 3455 68
Q ss_pred CCCEEEeCCCCCCcHHHHHHH-HHcCC-cEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC
Q 022677 184 GMDAIKLEGGSPSRITAARGI-VEAGI-AVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV 261 (293)
Q Consensus 184 Ga~gVkiEgg~~~~~~~ikal-~~~GI-pV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v 261 (293)
||+.|-+=.....-++.++.+ .+.|. ++.-=+.+ ..+-..+.|..+......++.++.|++.||+.+.+-.+
T Consensus 94 Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~------~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~ 167 (230)
T TIGR00007 94 GVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDA------RGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDI 167 (230)
T ss_pred CCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEE------ECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEee
Confidence 999987643221112233333 33331 12110110 01101223322111135677889999999997774433
Q ss_pred C---------HHHHHHHHHhcCCCEEE
Q 022677 262 P---------PPVAAAATSALQIPTIG 279 (293)
Q Consensus 262 p---------~e~a~~It~~l~iPtIG 279 (293)
. -++++.+.+.+++|++.
T Consensus 168 ~~~g~~~g~~~~~i~~i~~~~~ipvia 194 (230)
T TIGR00007 168 SRDGTLSGPNFELTKELVKAVNVPVIA 194 (230)
T ss_pred cCCCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 2 47889999999999883
No 99
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=95.68 E-value=0.68 Score=42.64 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=65.3
Q ss_pred cCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC------------------CCcHHHHHHHHHcCCcEE
Q 022677 151 AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------------------PSRITAARGIVEAGIAVM 212 (293)
Q Consensus 151 ~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~------------------~~~~~~ikal~~~GIpV~ 212 (293)
.+.| +++.+- +.++++..+.|.++ ++ ++++|.|-=|. +...++++++.+.++||.
T Consensus 71 ~~~p-~~vqi~----g~~~~~~~~aa~~~-~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVs 143 (233)
T cd02911 71 SNVL-VGVNVR----SSSLEPLLNAAALV-AK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVS 143 (233)
T ss_pred cCCe-EEEEec----CCCHHHHHHHHHHH-hh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEE
Confidence 3455 666664 24678877776554 44 46888875442 123456777777788876
Q ss_pred EeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC------HHHHHHHHHhcCCCEEEeC
Q 022677 213 GHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP------PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 213 GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp------~e~a~~It~~l~iPtIGIG 281 (293)
-=+.+ |-+ .+.++-++.++++|+|+|-+.+.. -+.++.+. +++|+||-|
T Consensus 144 vKir~--------------g~~----~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~~ipVIgnG 198 (233)
T cd02911 144 VKIRA--------------GVD----VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--TELFIIGNN 198 (233)
T ss_pred EEEcC--------------CcC----cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--CCCEEEEEC
Confidence 32221 112 346677889999999999887532 25555554 689988655
No 100
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.67 E-value=0.14 Score=48.00 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=60.1
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCeEEeeCCC-CCCCCCHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~-~~p~vvaDmpf-Gsy~~s~e~av~~A~rl~k 181 (293)
-|+.++++|+|++++-- |.....+-+++..|.+.|++++ +.|+++=|.|. .++..+++.. .++.+
T Consensus 88 ~a~~a~~~Gad~v~~~~---------P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~----~~L~~ 154 (288)
T cd00954 88 LAKHAEELGYDAISAIT---------PFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQF----LELFE 154 (288)
T ss_pred HHHHHHHcCCCEEEEeC---------CCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHH----HHHhc
Confidence 46788999999998642 2233356799999999999999 89999999994 5676777655 35554
Q ss_pred HhCCCEEEeCCCC
Q 022677 182 EGGMDAIKLEGGS 194 (293)
Q Consensus 182 eaGa~gVkiEgg~ 194 (293)
--.+.+||-+.+.
T Consensus 155 ~pnivgiK~s~~d 167 (288)
T cd00954 155 IPNVIGVKFTATD 167 (288)
T ss_pred CCCEEEEEeCCCC
Confidence 4578999998775
No 101
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=95.67 E-value=0.61 Score=44.15 Aligned_cols=134 Identities=27% Similarity=0.304 Sum_probs=83.1
Q ss_pred hhccCCCCccCC---HHHHHHHHHHHHccc-CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC------
Q 022677 125 VVHGHDTTLPIT---LEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------ 194 (293)
Q Consensus 125 ~~lG~~dt~~vt---l~eml~h~raV~Ra~-~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~------ 194 (293)
.+.||..++.++ ++..+.+.+...+.. ..|+ ++-+= |+| ++++-++.|.++ ++.|+++|-|-=+.
T Consensus 68 n~~g~~n~e~~s~~~~~~~~~~~~~~~~~~~~~p~-i~si~-G~~--~~~~~~~~a~~~-~~~gad~ielN~sCP~~~~~ 142 (299)
T cd02940 68 GQIGFNNIELISEKPLEYWLKEIRELKKDFPDKIL-IASIM-CEY--NKEDWTELAKLV-EEAGADALELNFSCPHGMPE 142 (299)
T ss_pred hcccccCCccccccCHHHHHHHHHHHHhhCCCCeE-EEEec-CCC--CHHHHHHHHHHH-HhcCCCEEEEECCCCCCCCC
Confidence 466777766544 666666676666654 3564 44332 333 678888877665 56899998773221
Q ss_pred -----------CCcHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec---
Q 022677 195 -----------PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE--- 259 (293)
Q Consensus 195 -----------~~~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE--- 259 (293)
+...++++++.+. .+||.-= |.| . ..++.+.+++++++|||+|.+=
T Consensus 143 ~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vK--l~~--------------~---~~~~~~~a~~~~~~Gadgi~~~Nt~ 203 (299)
T cd02940 143 RGMGAAVGQDPELVEEICRWVREAVKIPVIAK--LTP--------------N---ITDIREIARAAKEGGADGVSAINTV 203 (299)
T ss_pred CCCchhhccCHHHHHHHHHHHHHhcCCCeEEE--CCC--------------C---chhHHHHHHHHHHcCCCEEEEeccc
Confidence 1123445555442 5666522 111 1 1256778888999999999831
Q ss_pred ---------C--------------------C-C--HHHHHHHHHhc--CCCEEEeCC
Q 022677 260 ---------C--------------------V-P--PPVAAAATSAL--QIPTIGIGA 282 (293)
Q Consensus 260 ---------~--------------------v-p--~e~a~~It~~l--~iPtIGIGa 282 (293)
. + | -+.+.++.+.+ ++|+||-|.
T Consensus 204 ~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GG 260 (299)
T cd02940 204 NSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGG 260 (299)
T ss_pred ccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECC
Confidence 0 0 1 37788999999 899998663
No 102
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=95.67 E-value=0.53 Score=48.03 Aligned_cols=160 Identities=15% Similarity=0.182 Sum_probs=99.4
Q ss_pred CHHHHHHHHHcCCcEEEE-CchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCC-CCCCCCCHHHHHHHHHH
Q 022677 101 DYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP-FGTYESSTNQAVDTAVR 178 (293)
Q Consensus 101 D~~SAriae~AG~Dailv-GdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmp-fGsy~~s~e~av~~A~r 178 (293)
-.+-|...+++|++.|=+ |.+-=-++++|-...+ |+.+ ...+....-++.-++.--.- . +|..-+++.++..++
T Consensus 37 ~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edp--werl-r~~r~~~~nt~lqmLlRG~n~v-gy~~ypddvv~~fv~ 112 (468)
T PRK12581 37 MLPVLTILDKIGYYSLECWGGATFDACIRFLNEDP--WERL-RTLKKGLPNTRLQMLLRGQNLL-GYRHYADDIVDKFIS 112 (468)
T ss_pred HHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCH--HHHH-HHHHHhCCCCceeeeecccccc-CccCCcchHHHHHHH
Confidence 345678899999999954 4333345677776653 4443 33333333333333332200 2 344335777777788
Q ss_pred HHHHhCCCEEEeCCCCCC---cHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcE
Q 022677 179 ILKEGGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFS 255 (293)
Q Consensus 179 l~keaGa~gVkiEgg~~~---~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~ 255 (293)
...+.|++.+.+=|.... ....++.+.+.|.-+.+-+..+- .+....+-.++-++.++++||+.
T Consensus 113 ~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~-------------sp~~t~~y~~~~a~~l~~~Gad~ 179 (468)
T PRK12581 113 LSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTT-------------SPVHTLNYYLSLVKELVEMGADS 179 (468)
T ss_pred HHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe-------------CCcCcHHHHHHHHHHHHHcCCCE
Confidence 877899999999986432 34567888899988776544221 11123456777888999999999
Q ss_pred EEecC-----CCH---HHHHHHHHhcCCCE
Q 022677 256 VVLEC-----VPP---PVAAAATSALQIPT 277 (293)
Q Consensus 256 IvlE~-----vp~---e~a~~It~~l~iPt 277 (293)
|.+-= .|. ++.+.|.+..++|+
T Consensus 180 I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi 209 (468)
T PRK12581 180 ICIKDMAGILTPKAAKELVSGIKAMTNLPL 209 (468)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHhccCCeE
Confidence 99872 242 55566666566663
No 103
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.66 E-value=0.52 Score=39.39 Aligned_cols=144 Identities=23% Similarity=0.226 Sum_probs=78.5
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
.++.+.+.|++++-+++..... .+. ..... ...+.+++..+.| +.+++-...+ .+.+.-..+.++++
T Consensus 17 ~~~~~~~~G~~~v~~~~~~~~~-~~~---~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~a~~~~~~ 83 (200)
T cd04722 17 LAKAAAEAGADAIIVGTRSSDP-EEA---ETDDK----EVLKEVAAETDLP-LGVQLAINDA----AAAVDIAAAAARAA 83 (200)
T ss_pred HHHHHHcCCCCEEEEeeEEECc-ccC---CCccc----cHHHHHHhhcCCc-EEEEEccCCc----hhhhhHHHHHHHHc
Confidence 4556677899999877533221 110 01100 2344555566777 4444433222 22222112445689
Q ss_pred CCCEEEeCCCCCC----cHHHHHHHHHc--CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEE
Q 022677 184 GMDAIKLEGGSPS----RITAARGIVEA--GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (293)
Q Consensus 184 Ga~gVkiEgg~~~----~~~~ikal~~~--GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~Iv 257 (293)
|+++|.+-+.... ....++++.+. ++++.-=+ .+ . ++ ..+ + .+.+.|++.|.
T Consensus 84 g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~--~~-----~--------~~--~~~----~-~~~~~g~d~i~ 141 (200)
T cd04722 84 GADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKL--SP-----T--------GE--LAA----A-AAEEAGVDEVG 141 (200)
T ss_pred CCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEE--CC-----C--------Cc--cch----h-hHHHcCCCEEE
Confidence 9999999876521 34566777765 66665221 11 1 00 000 0 17889999998
Q ss_pred ecCCCH------------HHHHHHHHhcCCCEEEeCC
Q 022677 258 LECVPP------------PVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 258 lE~vp~------------e~a~~It~~l~iPtIGIGa 282 (293)
+..... ...+.+.+..++|++..|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GG 178 (200)
T cd04722 142 LGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGG 178 (200)
T ss_pred EcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECC
Confidence 865321 3455666778899998663
No 104
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.63 E-value=0.17 Score=48.58 Aligned_cols=161 Identities=22% Similarity=0.188 Sum_probs=92.0
Q ss_pred EecCCHHHHHHHHHcC-CcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHH
Q 022677 97 VTAYDYPSAVHLDSAG-IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDT 175 (293)
Q Consensus 97 ~tayD~~SAriae~AG-~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~ 175 (293)
-+.=|.+.=+++.+.| +|.+.+.- +.+..+-+.+.....+.+++.+ ....-...| +++-+- +.++++..+.
T Consensus 9 ag~td~~fR~l~~~~g~~~~~~tem-vs~~~~~~~~~~~~~~~~~~~~--~~~~~~e~p-~~vQl~----g~~p~~~~~a 80 (312)
T PRK10550 9 EGVLDSLVRELLTEVNDYDLCITEF-LRVVDQLLPVKVFHRLCPELHN--ASRTPSGTL-VRIQLL----GQYPQWLAEN 80 (312)
T ss_pred CCCcCHHHHHHHHHhCCCCEEEeCC-EEechhcccchhHHHHhHHhcc--cCCCCCCCc-EEEEec----cCCHHHHHHH
Confidence 3455777777777777 78887742 2111111221110011111100 001122355 555543 3578888888
Q ss_pred HHHHHHHhCCCEEEeCCCCC------------------CcHHHHHHHHHc---CCcEEEeccccceeeeecCCcccccCC
Q 022677 176 AVRILKEGGMDAIKLEGGSP------------------SRITAARGIVEA---GIAVMGHVGLTPQAISVLGGFRPQGKN 234 (293)
Q Consensus 176 A~rl~keaGa~gVkiEgg~~------------------~~~~~ikal~~~---GIpV~GHiGLtPq~~~~lgGf~vqGrt 234 (293)
|.++. +.|.++|.|--|.+ ....+++++.++ ++||.--+.+ |+ +
T Consensus 81 A~~~~-~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~---------g~-----~ 145 (312)
T PRK10550 81 AARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL---------GW-----D 145 (312)
T ss_pred HHHHH-HcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC---------CC-----C
Confidence 87765 68999999986531 122444555442 3566533221 22 1
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecC---------CC--HHHHHHHHHhcCCCEEEeCC
Q 022677 235 VTSAVKVVETALALQEVGCFSVVLEC---------VP--PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 235 ~~~a~e~l~rA~a~eeAGA~~IvlE~---------vp--~e~a~~It~~l~iPtIGIGa 282 (293)
+.++.++-++.++++|+++|.+-+ .+ -+.++.|.+.+++|+||=|.
T Consensus 146 --~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGd 202 (312)
T PRK10550 146 --SGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGE 202 (312)
T ss_pred --CchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCC
Confidence 113467889999999999999954 11 36789999999999987663
No 105
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.61 E-value=0.84 Score=40.96 Aligned_cols=129 Identities=20% Similarity=0.197 Sum_probs=77.8
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE---eeCCCCCC--CCCHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV---GDLPFGTY--ESSTNQAVDTAVR 178 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv---aDmpfGsy--~~s~e~av~~A~r 178 (293)
.|+.+.++|+.++-++ ++ ...+.|++.++.|++. -|++-... +.+.+++ +
T Consensus 32 ~a~~~~~~G~~~~~~~----------------~~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~-----~ 86 (219)
T cd04729 32 MALAAVQGGAVGIRAN----------------GV----EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEV-----D 86 (219)
T ss_pred HHHHHHHCCCeEEEcC----------------CH----HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHH-----H
Confidence 4666778888765432 11 2335555557788652 35431111 1123333 3
Q ss_pred HHHHhCCCEEEeCCCC------CCcHHHHHHHHHcC-CcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHc
Q 022677 179 ILKEGGMDAIKLEGGS------PSRITAARGIVEAG-IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEV 251 (293)
Q Consensus 179 l~keaGa~gVkiEgg~------~~~~~~ikal~~~G-IpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeA 251 (293)
...++||+.|-+-... +...+.++++.+.| ++++.- -.|. ++++..+++
T Consensus 87 ~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~-----------------v~t~-------~ea~~a~~~ 142 (219)
T cd04729 87 ALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMAD-----------------ISTL-------EEALNAAKL 142 (219)
T ss_pred HHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEE-----------------CCCH-------HHHHHHHHc
Confidence 3447999998873211 13567788888888 777621 0232 245777889
Q ss_pred CCcEEEecC-----------CC-HHHHHHHHHhcCCCEEEeC
Q 022677 252 GCFSVVLEC-----------VP-PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 252 GA~~IvlE~-----------vp-~e~a~~It~~l~iPtIGIG 281 (293)
|+|.+.++. .+ -+.++.+.+.+++|++..|
T Consensus 143 G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~G 184 (219)
T cd04729 143 GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEG 184 (219)
T ss_pred CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeC
Confidence 999997641 12 3788999999999999655
No 106
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.60 E-value=0.13 Score=51.45 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=65.6
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccC-CCCccCCHHHHHHHHHHHHcccCCCeEEee
Q 022677 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGH-DTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (293)
Q Consensus 81 ~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~-~dt~~vtl~eml~h~raV~Ra~~~p~vvaD 159 (293)
++.+++.+ .+.+|++-++-++-.|+.+.++|+|+|.+|-..+..+-+- .++..++--..+..++.+++..+.| |++|
T Consensus 185 v~~ik~~~-p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vp-VIAd 262 (404)
T PRK06843 185 VKKIKTKY-PNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNIC-IIAD 262 (404)
T ss_pred HHHHHhhC-CCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCe-EEEe
Confidence 44444433 2355777799999999999999999999875443321111 0111223223455566777777777 8999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 160 mpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
|++ .++++++ +.+ ..||++|.+=
T Consensus 263 ---GGI-~~~~Di~----KAL-alGA~aVmvG 285 (404)
T PRK06843 263 ---GGI-RFSGDVV----KAI-AAGADSVMIG 285 (404)
T ss_pred ---CCC-CCHHHHH----HHH-HcCCCEEEEc
Confidence 777 5778884 567 5899999984
No 107
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=95.52 E-value=0.15 Score=48.16 Aligned_cols=94 Identities=22% Similarity=0.334 Sum_probs=65.9
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeE-----E--eeCCCCCCC---CC---HH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL-----V--GDLPFGTYE---SS---TN 170 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~v-----v--aDmpfGsy~---~s---~e 170 (293)
..|+.+++|+++|-+-|+ +||....+++++ .+.|++ . .|.-+|+|- .+ .+
T Consensus 99 a~r~~~~aGa~aVkiEdg----------------~~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~ 161 (264)
T PRK00311 99 AGRLMKEAGAHAVKLEGG----------------EEVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAE 161 (264)
T ss_pred HHHHHHHhCCeEEEEcCc----------------HHHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCHHHHH
Confidence 467888899999988764 488888888875 456742 1 333345562 22 45
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHc-CCcEEEeccccc
Q 022677 171 QAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTP 219 (293)
Q Consensus 171 ~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~-GIpV~GHiGLtP 219 (293)
++++.|..+. ++||++|.+|+=. .+.+++++++ .||+.| ||=-|
T Consensus 162 ~~i~ra~a~~-eAGA~~i~lE~v~---~~~~~~i~~~l~iP~ig-iGaG~ 206 (264)
T PRK00311 162 KLLEDAKALE-EAGAFALVLECVP---AELAKEITEALSIPTIG-IGAGP 206 (264)
T ss_pred HHHHHHHHHH-HCCCCEEEEcCCC---HHHHHHHHHhCCCCEEE-eccCC
Confidence 7888876654 8999999999853 4567778654 799998 66444
No 108
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.49 E-value=0.092 Score=49.16 Aligned_cols=77 Identities=22% Similarity=0.217 Sum_probs=59.1
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCC-CCCCCCHHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpf-Gsy~~s~e~av~~A~rl~ke 182 (293)
-|+.++++|+|++++. -|.....+-++++.|.+.|+++++.|+++-|.|. -++..+++.. .++.+.
T Consensus 85 ~a~~a~~~Gad~v~v~---------pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l----~~L~~~ 151 (285)
T TIGR00674 85 LTKFAEDVGADGFLVV---------TPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETV----KRLAEE 151 (285)
T ss_pred HHHHHHHcCCCEEEEc---------CCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHH----HHHHcC
Confidence 4688889999999874 2444455779999999999999999999999994 4576777655 356654
Q ss_pred hCCCEEEeCCC
Q 022677 183 GGMDAIKLEGG 193 (293)
Q Consensus 183 aGa~gVkiEgg 193 (293)
-.+.+||-..+
T Consensus 152 ~~v~giK~s~~ 162 (285)
T TIGR00674 152 PNIVAIKEATG 162 (285)
T ss_pred CCEEEEEeCCC
Confidence 57889995544
No 109
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.49 E-value=0.16 Score=47.22 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=60.1
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCC-CCCCCCHHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpf-Gsy~~s~e~av~~A~rl~ke 182 (293)
-|+.++++|+|.+++. .|.....+-++++.|.+.|+.+++.|+++-|.|. .++..|++.. .++.+.
T Consensus 87 ~a~~a~~~G~d~v~~~---------~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~----~~L~~~ 153 (284)
T cd00950 87 LTKRAEKAGADAALVV---------TPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETV----LRLAEH 153 (284)
T ss_pred HHHHHHHcCCCEEEEc---------ccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHH----HHHhcC
Confidence 4678889999999875 3444455679999999999999999999999994 4565777755 356655
Q ss_pred hCCCEEEeCCCC
Q 022677 183 GGMDAIKLEGGS 194 (293)
Q Consensus 183 aGa~gVkiEgg~ 194 (293)
-.+.+||-..+.
T Consensus 154 p~v~giK~s~~~ 165 (284)
T cd00950 154 PNIVGIKEATGD 165 (284)
T ss_pred CCEEEEEECCCC
Confidence 679999976543
No 110
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=95.45 E-value=0.6 Score=48.86 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCcEEEECch-hhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCC----CCCCCCCHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDS-AAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP----FGTYESSTNQAVDTAV 177 (293)
Q Consensus 103 ~SAriae~AG~DailvGdS-la~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmp----fGsy~~s~e~av~~A~ 177 (293)
.-|...+++|++.|=++.+ ---+++.| ..+=+|+.+ |.+++..++..+..=++ . +|..-++++++.-+
T Consensus 31 ~ia~~ld~~G~~siE~~GGatf~~~~~~--~~e~p~e~l----r~l~~~~~~~~lqml~Rg~n~v-g~~~ypddvv~~~v 103 (593)
T PRK14040 31 PIAAKLDKVGYWSLESWGGATFDACIRF--LGEDPWERL----RELKKAMPNTPQQMLLRGQNLL-GYRHYADDVVERFV 103 (593)
T ss_pred HHHHHHHHcCCCEEEecCCcchhhhccc--cCCCHHHHH----HHHHHhCCCCeEEEEecCccee-ccccCcHHHHHHHH
Confidence 3678889999999955311 11122222 233334433 55555444443322112 2 35333678888777
Q ss_pred HHHHHhCCCEEEeCCCCCC---cHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCc
Q 022677 178 RILKEGGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCF 254 (293)
Q Consensus 178 rl~keaGa~gVkiEgg~~~---~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~ 254 (293)
+...+.|++.+.|-|.... ....++.+.+.|..+.|-+.+|- . .....+.+++-++.++++||+
T Consensus 104 ~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~-----~--------p~~~~~~~~~~a~~l~~~Gad 170 (593)
T PRK14040 104 ERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTT-----S--------PVHTLQTWVDLAKQLEDMGVD 170 (593)
T ss_pred HHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEee-----C--------CccCHHHHHHHHHHHHHcCCC
Confidence 7777899999999986432 33567888899998877554321 0 011345677888899999999
Q ss_pred EEEec-----CCCH---HHHHHHHHhcCCCE
Q 022677 255 SVVLE-----CVPP---PVAAAATSALQIPT 277 (293)
Q Consensus 255 ~IvlE-----~vp~---e~a~~It~~l~iPt 277 (293)
.|.+- +.|. ++.+.+.+++++|+
T Consensus 171 ~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi 201 (593)
T PRK14040 171 SLCIKDMAGLLKPYAAYELVSRIKKRVDVPL 201 (593)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHHhcCCeE
Confidence 99987 2342 66677777777774
No 111
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.44 E-value=0.34 Score=49.01 Aligned_cols=155 Identities=21% Similarity=0.228 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCcEEEECchhh-hhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE-----eeCCCCCCCCCHHHHHHH
Q 022677 102 YPSAVHLDSAGIDICLVGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-----GDLPFGTYESSTNQAVDT 175 (293)
Q Consensus 102 ~~SAriae~AG~DailvGdSla-~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv-----aDmpfGsy~~s~e~av~~ 175 (293)
-.-|...+++|++.|=++.... .+++.|-+.. ++ |.+ +.+++..+...+. .++. +|..-++++++.
T Consensus 29 l~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~--p~-e~l---~~l~~~~~~~~l~~l~r~~N~~--G~~~~pddvv~~ 100 (448)
T PRK12331 29 LPILEKLDNAGYHSLEMWGGATFDACLRFLNED--PW-ERL---RKIRKAVKKTKLQMLLRGQNLL--GYRNYADDVVES 100 (448)
T ss_pred HHHHHHHHHcCCCEEEecCCccchhhhccCCCC--HH-HHH---HHHHHhCCCCEEEEEecccccc--ccccCchhhHHH
Confidence 3467788999999995432211 1233333332 33 333 3444433322222 2222 354445666665
Q ss_pred HHHHHHHhCCCEEEeCCCCC---CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcC
Q 022677 176 AVRILKEGGMDAIKLEGGSP---SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVG 252 (293)
Q Consensus 176 A~rl~keaGa~gVkiEgg~~---~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAG 252 (293)
-++...+.|++.|.+-+... ...+.++.+.+.|..+.+.+..+- +- +. ..+.+++-++.++++|
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~------~p-----~~--~~~~~~~~a~~l~~~G 167 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT------SP-----VH--TIDYFVKLAKEMQEMG 167 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec------CC-----CC--CHHHHHHHHHHHHHcC
Confidence 55655589999999998642 234567778899988877654221 10 11 3456788889999999
Q ss_pred CcEEEecC-----CCH---HHHHHHHHhcCCCE
Q 022677 253 CFSVVLEC-----VPP---PVAAAATSALQIPT 277 (293)
Q Consensus 253 A~~IvlE~-----vp~---e~a~~It~~l~iPt 277 (293)
|+.|.+-= .|. ++++.+.+++++|+
T Consensus 168 ad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi 200 (448)
T PRK12331 168 ADSICIKDMAGILTPYVAYELVKRIKEAVTVPL 200 (448)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 99999872 242 66777777777774
No 112
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=95.42 E-value=1.1 Score=43.06 Aligned_cols=113 Identities=14% Similarity=0.089 Sum_probs=65.3
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCC
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfG 163 (293)
|.++.+.| +.+-+-+.-.|+++|+||.-++..=.-+-+-. .-.+.|..-.=..+.++|.+.++.| |++=.=-|
T Consensus 5 ~a~~~kgg---vimdv~~~eqa~iae~aga~avm~le~~p~d~---r~~ggv~R~~~p~~I~~I~~~V~iP-Vig~~kig 77 (287)
T TIGR00343 5 LAQMLKGG---VIMDVVNPEQAKIAEEAGAVAVMALERVPADI---RASGGVARMSDPKMIKEIMDAVSIP-VMAKVRIG 77 (287)
T ss_pred HHHHhcCC---eEEEeCCHHHHHHHHHcCceEEEeeccCchhh---HhcCCeeecCCHHHHHHHHHhCCCC-EEEEeecc
Confidence 66776654 56777888999999999998887522221110 0001111111145668899999999 55433332
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCC---cHHHHHHHHH-cCCcEEEec
Q 022677 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS---RITAARGIVE-AGIAVMGHV 215 (293)
Q Consensus 164 sy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~---~~~~ikal~~-~GIpV~GHi 215 (293)
| ..++ +.+.+.|+|.| |..+. ..+.+..+.. -++|+|.-+
T Consensus 78 -h---~~Ea-----~~L~~~GvDiI---DeTe~lrPade~~~~~K~~f~vpfmad~ 121 (287)
T TIGR00343 78 -H---FVEA-----QILEALGVDYI---DESEVLTPADWTFHIDKKKFKVPFVCGA 121 (287)
T ss_pred -H---HHHH-----HHHHHcCCCEE---EccCCCCcHHHHHHHHHHHcCCCEEccC
Confidence 3 2444 44558999999 44321 2244444433 278887654
No 113
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.42 E-value=0.89 Score=43.01 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=84.1
Q ss_pred CHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHH
Q 022677 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (293)
Q Consensus 101 D~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ 180 (293)
+...|+.++++|..+++.+-+ ..+++++... .+.|+.+ .+ |+++ +++...+.+ +.+
T Consensus 83 ~~~la~aa~~~g~~~~~~~~~------------~~~~~~i~~~-------~~~~~~~-ql-~~~~--~~~~~~~~i-~~~ 138 (299)
T cd02809 83 ELATARAAAAAGIPFTLSTVS------------TTSLEEVAAA-------APGPRWF-QL-YVPR--DREITEDLL-RRA 138 (299)
T ss_pred HHHHHHHHHHcCCCEEecCCC------------cCCHHHHHHh-------cCCCeEE-EE-eecC--CHHHHHHHH-HHH
Confidence 458899999999977765322 1256666432 2356433 33 1222 455555443 445
Q ss_pred HHhCCCEEEeCCCCC-----CcHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCc
Q 022677 181 KEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCF 254 (293)
Q Consensus 181 keaGa~gVkiEgg~~-----~~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~ 254 (293)
++.|+++|-+--+.. ...+.++++.+. ++||.-.. + .+ .+.|+.++++|+|
T Consensus 139 ~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~--------------v--~s-------~~~a~~a~~~G~d 195 (299)
T cd02809 139 EAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKG--------------I--LT-------PEDALRAVDAGAD 195 (299)
T ss_pred HHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEee--------------c--CC-------HHHHHHHHHCCCC
Confidence 578999988865442 123677888875 78876321 0 12 3568899999999
Q ss_pred EEEecC---------CC-HHHHHHHHHhcC--CCEEEeC
Q 022677 255 SVVLEC---------VP-PPVAAAATSALQ--IPTIGIG 281 (293)
Q Consensus 255 ~IvlE~---------vp-~e~a~~It~~l~--iPtIGIG 281 (293)
+|.+.. +| -+....+.+.++ +|+|+-|
T Consensus 196 ~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~G 234 (299)
T cd02809 196 GIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDG 234 (299)
T ss_pred EEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeC
Confidence 999843 44 477888888884 8976543
No 114
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=95.40 E-value=0.21 Score=48.23 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=70.7
Q ss_pred CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC------------------CcHHHHHHHHHc-CCcEEE
Q 022677 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP------------------SRITAARGIVEA-GIAVMG 213 (293)
Q Consensus 153 ~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~------------------~~~~~ikal~~~-GIpV~G 213 (293)
.| +++-+- +.++++..+.|.+ +++.|+|+|.|-.|.+ ...++++++.++ ++||--
T Consensus 65 ~p-~~vQl~----g~~p~~~~~aA~~-~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsv 138 (333)
T PRK11815 65 HP-VALQLG----GSDPADLAEAAKL-AEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTV 138 (333)
T ss_pred Cc-EEEEEe----CCCHHHHHHHHHH-HHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEE
Confidence 45 666654 2578888877755 4578999998876531 123556666553 566653
Q ss_pred eccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC---------------C---HHHHHHHHHhc-C
Q 022677 214 HVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV---------------P---PPVAAAATSAL-Q 274 (293)
Q Consensus 214 HiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v---------------p---~e~a~~It~~l-~ 274 (293)
-+. ..+. + .+...++++-++.++++|+++|.+.+- | -+.++.+.+.+ +
T Consensus 139 KiR-----~g~~------~--~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~ 205 (333)
T PRK11815 139 KHR-----IGID------D--QDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPH 205 (333)
T ss_pred EEE-----eeeC------C--CcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCC
Confidence 321 1111 1 112356778889999999999998641 1 36778888886 8
Q ss_pred CCEEEeC
Q 022677 275 IPTIGIG 281 (293)
Q Consensus 275 iPtIGIG 281 (293)
+|+|+-|
T Consensus 206 iPVI~nG 212 (333)
T PRK11815 206 LTIEING 212 (333)
T ss_pred CeEEEEC
Confidence 9998765
No 115
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=95.40 E-value=0.34 Score=47.51 Aligned_cols=153 Identities=23% Similarity=0.335 Sum_probs=103.2
Q ss_pred HHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCE
Q 022677 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDA 187 (293)
Q Consensus 108 ae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~g 187 (293)
++++|+|++-+. ++-.|-.+.++.|++-.+.| +++|+=| .| .-+ .+.. +.|++.
T Consensus 45 L~~aG~dIVRvt---------------v~~~e~A~A~~~Ik~~~~vP-LVaDiHf-~~----rla----~~~~-~~g~~k 98 (361)
T COG0821 45 LERAGCDIVRVT---------------VPDMEAAEALKEIKQRLNVP-LVADIHF-DY----RLA----LEAA-ECGVDK 98 (361)
T ss_pred HHHcCCCEEEEe---------------cCCHHHHHHHHHHHHhCCCC-EEEEeec-cH----HHH----HHhh-hcCcce
Confidence 457788887553 22234455667788888889 9999998 36 334 3455 689999
Q ss_pred EEeCCCC----CCcHHHHHHHHHcCCcEEEeccccceeee--ecCCcccccCCHH-HHHHHHHHHHHHHHcCCcEEEecC
Q 022677 188 IKLEGGS----PSRITAARGIVEAGIAVMGHVGLTPQAIS--VLGGFRPQGKNVT-SAVKVVETALALQEVGCFSVVLEC 260 (293)
Q Consensus 188 VkiEgg~----~~~~~~ikal~~~GIpV~GHiGLtPq~~~--~lgGf~vqGrt~~-~a~e~l~rA~a~eeAGA~~IvlE~ 260 (293)
+.|--|- +...+++++..+.|||+= ||++--+-. .+. +..+.|.+ -.+.+++.++-+++.|=+=+.+-+
T Consensus 99 ~RINPGNig~~~~v~~vVe~Ak~~g~piR--IGVN~GSLek~~~~--ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~ 174 (361)
T COG0821 99 VRINPGNIGFKDRVREVVEAAKDKGIPIR--IGVNAGSLEKRLLE--KYGGPTPEALVESALEHAELLEELGFDDIKVSV 174 (361)
T ss_pred EEECCcccCcHHHHHHHHHHHHHcCCCEE--EecccCchhHHHHH--HhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 9998762 345688999999999985 454432211 010 11134544 347899999999999998877764
Q ss_pred ----CCH--HHHHHHHHhcCCCEE-Ee-CCCCCCCcee
Q 022677 261 ----VPP--PVAAAATSALQIPTI-GI-GAGPFCSGQV 290 (293)
Q Consensus 261 ----vp~--e~a~~It~~l~iPtI-GI-GaG~~~dGQv 290 (293)
+.. +.-+.++++++-|+= |+ =||.+.+|-|
T Consensus 175 K~Sdv~~~v~aYr~lA~~~dyPLHLGvTEAG~~~~G~V 212 (361)
T COG0821 175 KASDVQLMVAAYRLLAKRCDYPLHLGVTEAGMGFKGIV 212 (361)
T ss_pred EcCCHHHHHHHHHHHHHhcCCCcccceecccCccccee
Confidence 222 566778899998864 33 3788777754
No 116
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=95.35 E-value=0.52 Score=46.49 Aligned_cols=153 Identities=22% Similarity=0.322 Sum_probs=104.9
Q ss_pred HHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCE
Q 022677 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDA 187 (293)
Q Consensus 108 ae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~g 187 (293)
+++||+|++-+. ++=.+-....+.|++..+.| +++|+=| .| .-|+ ..+ +.|++.
T Consensus 51 L~~aGceiVRva---------------v~~~~~a~al~~I~~~~~iP-lvADIHF-d~----~lAl----~a~-~~G~~~ 104 (360)
T PRK00366 51 LARAGCEIVRVA---------------VPDMEAAAALPEIKKQLPVP-LVADIHF-DY----RLAL----AAA-EAGADA 104 (360)
T ss_pred HHHcCCCEEEEc---------------cCCHHHHHhHHHHHHcCCCC-EEEecCC-CH----HHHH----HHH-HhCCCE
Confidence 568899998653 22224456678888889988 9999999 56 4453 456 689999
Q ss_pred EEeCCCC-----CCcHHHHHHHHHcCCcEEEeccccceeeeecCCc-ccccC-CHH-HHHHHHHHHHHHHHcCCcEEEec
Q 022677 188 IKLEGGS-----PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGF-RPQGK-NVT-SAVKVVETALALQEVGCFSVVLE 259 (293)
Q Consensus 188 VkiEgg~-----~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf-~vqGr-t~~-~a~e~l~rA~a~eeAGA~~IvlE 259 (293)
+.|--|- +...+++++..+.|||.= ||++.-+... .+ ...|. |.+ -.+.+++.++.+++-|=+=|++-
T Consensus 105 iRINPGNig~~~~~v~~vv~~ak~~~ipIR--IGvN~GSL~~--~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS 180 (360)
T PRK00366 105 LRINPGNIGKRDERVREVVEAAKDYGIPIR--IGVNAGSLEK--DLLEKYGEPTPEALVESALRHAKILEELGFDDIKIS 180 (360)
T ss_pred EEECCCCCCchHHHHHHHHHHHHHCCCCEE--EecCCccChH--HHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 9998663 235578888899999974 4544432210 00 01233 443 34789999999999999999887
Q ss_pred C----CCH--HHHHHHHHhcCCCEE-Ee-CCCCCCCcee
Q 022677 260 C----VPP--PVAAAATSALQIPTI-GI-GAGPFCSGQV 290 (293)
Q Consensus 260 ~----vp~--e~a~~It~~l~iPtI-GI-GaG~~~dGQv 290 (293)
+ ++. +.-+.++++.+-|+= |+ =||.+.+|-|
T Consensus 181 ~KsS~v~~~i~ayrlla~~~dyPLHlGvTEAG~~~~G~i 219 (360)
T PRK00366 181 VKASDVQDLIAAYRLLAKRCDYPLHLGVTEAGMGFKGTV 219 (360)
T ss_pred EEcCCHHHHHHHHHHHHhcCCCCceecccCCCCCCCcee
Confidence 4 332 666778899999964 33 3788888764
No 117
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.35 E-value=0.61 Score=44.83 Aligned_cols=121 Identities=16% Similarity=0.147 Sum_probs=72.3
Q ss_pred CcE-EEEecCCH----HHHHHHHHcCCcEE-E-ECchhhh-hhccCCCCccCCHHHHHHHHHHHHcccC--CCeEEeeCC
Q 022677 92 EPI-TMVTAYDY----PSAVHLDSAGIDIC-L-VGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLP 161 (293)
Q Consensus 92 ~pi-~m~tayD~----~SAriae~AG~Dai-l-vGdSla~-~~lG~~dt~~vtl~eml~h~raV~Ra~~--~p~vvaDmp 161 (293)
.|+ +-+..-|. -.|+.+++.|+|.| + .|=.... +..|.-+...-..+.+.+-+++|+++++ .| |.+=+.
T Consensus 63 ~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~p-VsvKiR 141 (312)
T PRK10550 63 TLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLP-VTVKVR 141 (312)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcc-eEEEEE
Confidence 444 44555552 35778889999999 3 3332211 1333332333445566777888888774 56 667766
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC----C----cHHHHHHHHH-cCCcEEEecc
Q 022677 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP----S----RITAARGIVE-AGIAVMGHVG 216 (293)
Q Consensus 162 fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~----~----~~~~ikal~~-~GIpV~GHiG 216 (293)
.| + .+.++.++.+.. ++++|++.+.+-+... . -++.++++.+ .+|||+|.=+
T Consensus 142 ~g-~-~~~~~~~~~a~~-l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGd 202 (312)
T PRK10550 142 LG-W-DSGERKFEIADA-VQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGE 202 (312)
T ss_pred CC-C-CCchHHHHHHHH-HHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCC
Confidence 54 5 244556666554 5689999999976421 0 1344565654 4799998633
No 118
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.35 E-value=2.1 Score=38.79 Aligned_cols=146 Identities=21% Similarity=0.211 Sum_probs=93.6
Q ss_pred HhhhCCCcEEEEecCCHHH----HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCC
Q 022677 86 QKHKNGEPITMVTAYDYPS----AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (293)
Q Consensus 86 ~l~~~g~pi~m~tayD~~S----Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmp 161 (293)
+...+.+.+.++...|.-- +..+-+.|+.++=+...-. +-....+.+++..+.++++ +
T Consensus 5 ~~l~~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~---------------~~~~~i~~l~~~~~~~~~i---G 66 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSP---------------DPFDSIAALVKALGDRALI---G 66 (206)
T ss_pred hHHHhCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCc---------------cHHHHHHHHHHHcCCCcEE---e
Confidence 3344455667777766543 4445567999996542211 1123566677666555443 3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHH
Q 022677 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241 (293)
Q Consensus 162 fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~ 241 (293)
-|+. .+.+++ ...+ ++||+.+..=.-. .+++++..+.|+++. .| ..|.++
T Consensus 67 aGTV-~~~~~~----~~a~-~aGA~fivsp~~~---~~v~~~~~~~~~~~~------------~G-----~~t~~E---- 116 (206)
T PRK09140 67 AGTV-LSPEQV----DRLA-DAGGRLIVTPNTD---PEVIRRAVALGMVVM------------PG-----VATPTE---- 116 (206)
T ss_pred EEec-CCHHHH----HHHH-HcCCCEEECCCCC---HHHHHHHHHCCCcEE------------cc-----cCCHHH----
Confidence 3677 678877 2334 7999999884432 667787888888865 11 244333
Q ss_pred HHHHHHHHHcCCcEEEe---cCCCHHHHHHHHHhc--CCCEEEeCC
Q 022677 242 VETALALQEVGCFSVVL---ECVPPPVAAAATSAL--QIPTIGIGA 282 (293)
Q Consensus 242 l~rA~a~eeAGA~~Ivl---E~vp~e~a~~It~~l--~iPtIGIGa 282 (293)
+....++|||.|-+ +.+..+.++.+.+.+ ++|++.||+
T Consensus 117 ---~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipvvaiGG 159 (206)
T PRK09140 117 ---AFAALRAGAQALKLFPASQLGPAGIKALRAVLPPDVPVFAVGG 159 (206)
T ss_pred ---HHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeEEEECC
Confidence 34445699999976 556678889999988 399999994
No 119
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.32 E-value=0.3 Score=47.15 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=71.5
Q ss_pred CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC------------------CcHHHHHHHHHc-CCcEEE
Q 022677 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP------------------SRITAARGIVEA-GIAVMG 213 (293)
Q Consensus 153 ~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~------------------~~~~~ikal~~~-GIpV~G 213 (293)
.| +++-+- +.++++..+.|.. +++.|+++|.|--|.+ ....+++++.++ ++||.-
T Consensus 55 ~p-~~vQl~----g~~p~~~~~aA~~-~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsv 128 (318)
T TIGR00742 55 SP-VALQLG----GSDPNDLAKCAKI-AEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTV 128 (318)
T ss_pred Cc-EEEEEc----cCCHHHHHHHHHH-HHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEE
Confidence 45 555543 3578888777655 5578999999876631 134556666553 566653
Q ss_pred eccccceeeeecCCcccccCC-HHHHHHHHHHHHHHHHcCCcEEEecCCC-----------------H-HHHHHHHHhc-
Q 022677 214 HVGLTPQAISVLGGFRPQGKN-VTSAVKVVETALALQEVGCFSVVLECVP-----------------P-PVAAAATSAL- 273 (293)
Q Consensus 214 HiGLtPq~~~~lgGf~vqGrt-~~~a~e~l~rA~a~eeAGA~~IvlE~vp-----------------~-e~a~~It~~l- 273 (293)
=+. .|-+ .+..+++++-++.++++|+++|-+.+=+ . +.+.++.+.+
T Consensus 129 KiR--------------~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~ 194 (318)
T TIGR00742 129 KHR--------------IGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP 194 (318)
T ss_pred EEe--------------cCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC
Confidence 322 1211 1244678889999999999999988632 1 4567788888
Q ss_pred CCCEEEeC
Q 022677 274 QIPTIGIG 281 (293)
Q Consensus 274 ~iPtIGIG 281 (293)
++|+||=|
T Consensus 195 ~ipVi~NG 202 (318)
T TIGR00742 195 HLTIEING 202 (318)
T ss_pred CCcEEEEC
Confidence 79998754
No 120
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.30 E-value=0.16 Score=48.08 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=64.4
Q ss_pred CCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 79 VTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 79 ~t~~~Lr~l~~~-g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
.+.+.++.+++. +.|+++-.+-+.-.|+.++++|+|+|.++...+.. .|++..+++-+....+.+.. +.| |+
T Consensus 159 ~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~----~~~g~~~~~~l~~i~~~~~~--~ip-vi 231 (299)
T cd02809 159 LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQ----LDGAPATIDALPEIVAAVGG--RIE-VL 231 (299)
T ss_pred CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCC----CCCCcCHHHHHHHHHHHhcC--CCe-EE
Confidence 455667776654 57888888888889999999999999876443321 13444455444333333321 356 78
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 158 aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
+| |+. .+.++++ +.+ ..||++|.+-
T Consensus 232 a~---GGI-~~~~d~~----kal-~lGAd~V~ig 256 (299)
T cd02809 232 LD---GGI-RRGTDVL----KAL-ALGADAVLIG 256 (299)
T ss_pred Ee---CCC-CCHHHHH----HHH-HcCCCEEEEc
Confidence 88 677 4777774 566 4899999984
No 121
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=95.28 E-value=0.98 Score=43.40 Aligned_cols=169 Identities=15% Similarity=0.161 Sum_probs=89.3
Q ss_pred CcEEEEecCC--HHHHHHHHHcCCcEEEECchhhhh-hccCCCC-----------------ccCCHHHHHHHHHHHHccc
Q 022677 92 EPITMVTAYD--YPSAVHLDSAGIDICLVGDSAAMV-VHGHDTT-----------------LPITLEEMLVHCRAVARGA 151 (293)
Q Consensus 92 ~pi~m~tayD--~~SAriae~AG~DailvGdSla~~-~lG~~dt-----------------~~vtl~eml~h~raV~Ra~ 151 (293)
.||..-..+| .-..+.+.++|+.++.++. +..- ..|++.. .....+.++...+.... .
T Consensus 50 nPi~~AsG~~~~~~~~~~~~~~G~Gavv~kt-it~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~-~ 127 (327)
T cd04738 50 NPVGLAAGFDKNAEAIDALLALGFGFVEVGT-VTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRP-R 127 (327)
T ss_pred CCCEeCcCCCCCHHHHHHHHHCCCcEEEEec-cCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhcc-C
Confidence 3554433344 2223334578888888763 3221 2232210 02336777766665433 4
Q ss_pred CCCeEEeeCCCCCC---CCCHHHHHHHHHHHHHHhCCCEEEeCCCCC------------CcHHHHHHHHHc------CCc
Q 022677 152 KRPLLVGDLPFGTY---ESSTNQAVDTAVRILKEGGMDAIKLEGGSP------------SRITAARGIVEA------GIA 210 (293)
Q Consensus 152 ~~p~vvaDmpfGsy---~~s~e~av~~A~rl~keaGa~gVkiEgg~~------------~~~~~ikal~~~------GIp 210 (293)
+.| +++.+-..++ +.+.++-++.+.++- .+++++-|.=+.. ...++++++.+. .+|
T Consensus 128 ~~p-livsi~g~~~~~~~~~~~d~~~~~~~~~--~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~P 204 (327)
T cd04738 128 GGP-LGVNIGKNKDTPLEDAVEDYVIGVRKLG--PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVP 204 (327)
T ss_pred CCe-EEEEEeCCCCCcccccHHHHHHHHHHHH--hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCC
Confidence 556 6666632111 223455544433322 2378876643221 123455555442 266
Q ss_pred EEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC-------------------------C--H
Q 022677 211 VMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-------------------------P--P 263 (293)
Q Consensus 211 V~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v-------------------------p--~ 263 (293)
+.-= |.|. -+ .+++.+-+++++++|||+|.+-.- | -
T Consensus 205 v~vK--l~~~------------~~---~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l 267 (327)
T cd04738 205 LLVK--IAPD------------LS---DEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERST 267 (327)
T ss_pred eEEE--eCCC------------CC---HHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHH
Confidence 6532 2121 11 245677788999999999997531 1 2
Q ss_pred HHHHHHHHhc--CCCEEEeCC
Q 022677 264 PVAAAATSAL--QIPTIGIGA 282 (293)
Q Consensus 264 e~a~~It~~l--~iPtIGIGa 282 (293)
+.++.+.+.+ ++|+||.|.
T Consensus 268 ~~v~~l~~~~~~~ipIi~~GG 288 (327)
T cd04738 268 EVLRELYKLTGGKIPIIGVGG 288 (327)
T ss_pred HHHHHHHHHhCCCCcEEEECC
Confidence 6778888888 799998774
No 122
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=95.27 E-value=0.19 Score=46.74 Aligned_cols=90 Identities=26% Similarity=0.254 Sum_probs=78.1
Q ss_pred EEEecCCHHHHHHHHHcCCcEEEECc--hhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHH
Q 022677 95 TMVTAYDYPSAVHLDSAGIDICLVGD--SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQA 172 (293)
Q Consensus 95 ~m~tayD~~SAriae~AG~DailvGd--Sla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~a 172 (293)
+++.+-|.-.=--+-+||.|+|=+|. |+ |+.+...+.+|.+.-++..+.-.|..++.+-.|.- ...++=
T Consensus 64 ICVSaVep~~f~~aV~AGAdliEIGNfDsF------Y~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHi---L~ld~Q 134 (242)
T PF04481_consen 64 ICVSAVEPELFVAAVKAGADLIEIGNFDSF------YAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHI---LPLDQQ 134 (242)
T ss_pred eEeecCCHHHHHHHHHhCCCEEEecchHHH------HhcCCeecHHHHHHHHHHHHHhCCCCceEEecCcc---ccHHHH
Confidence 67788888777778899999998883 55 88889999999999999999999988899999972 567888
Q ss_pred HHHHHHHHHHhCCCEEEeCCCC
Q 022677 173 VDTAVRILKEGGMDAIKLEGGS 194 (293)
Q Consensus 173 v~~A~rl~keaGa~gVkiEgg~ 194 (293)
++-|.++. +.|+|.|+-|||.
T Consensus 135 v~LA~~L~-~~GaDiIQTEGgt 155 (242)
T PF04481_consen 135 VQLAEDLV-KAGADIIQTEGGT 155 (242)
T ss_pred HHHHHHHH-HhCCcEEEcCCCC
Confidence 88999987 6999999999985
No 123
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.26 E-value=0.31 Score=45.92 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------CcHHHHHHHHH---cCCcEEEeccccceeeeecCCcccccCC
Q 022677 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGSP--------SRITAARGIVE---AGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (293)
Q Consensus 166 ~~s~e~av~~A~rl~keaGa~gVkiEgg~~--------~~~~~ikal~~---~GIpV~GHiGLtPq~~~~lgGf~vqGrt 234 (293)
..+.+..-+.+-+++ +.|++||-+-|... +...+++..++ ..+||+.|++
T Consensus 17 ~iD~~~l~~l~~~l~-~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~------------------ 77 (289)
T cd00951 17 SFDEDAYRAHVEWLL-SYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG------------------ 77 (289)
T ss_pred CcCHHHHHHHHHHHH-HcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC------------------
Confidence 355555555555555 78999999988631 12233343333 3478886644
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHHhcCCCEEEeC
Q 022677 235 VTSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSALQIPTIGIG 281 (293)
Q Consensus 235 ~~~a~e~l~rA~a~eeAGA~~IvlE~v----p--~e~---a~~It~~l~iPtIGIG 281 (293)
. ...+.++.++.++++|||++++-.. + +++ .+.|.+.+++|++.+-
T Consensus 78 ~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 78 Y-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 1 2357788999999999999987532 1 233 3457788899999874
No 124
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.26 E-value=0.2 Score=46.93 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=59.5
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCC-CCCCCCHHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpf-Gsy~~s~e~av~~A~rl~ke 182 (293)
-|+.++++|+|++++. .|.....+-++++.|.++|+++++.|+++-|.|. .++..|++.. .++.+-
T Consensus 88 ~a~~a~~~G~d~v~~~---------pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~----~~L~~~ 154 (292)
T PRK03170 88 LTKFAEKAGADGALVV---------TPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETV----ARLAEH 154 (292)
T ss_pred HHHHHHHcCCCEEEEC---------CCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHH----HHHHcC
Confidence 4688899999999874 3444455779999999999999999999999994 3566777644 355544
Q ss_pred hCCCEEEeCCCC
Q 022677 183 GGMDAIKLEGGS 194 (293)
Q Consensus 183 aGa~gVkiEgg~ 194 (293)
-.+.|+|-..+.
T Consensus 155 p~v~giK~s~~d 166 (292)
T PRK03170 155 PNIVGIKEATGD 166 (292)
T ss_pred CCEEEEEECCCC
Confidence 578999976553
No 125
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=95.24 E-value=0.6 Score=45.83 Aligned_cols=152 Identities=24% Similarity=0.355 Sum_probs=104.9
Q ss_pred HHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCE
Q 022677 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDA 187 (293)
Q Consensus 108 ae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~g 187 (293)
++++|||++-+. ++=.+-....+.|++..+.| +++|+=| .| ..| ...+ +.|++.
T Consensus 43 L~~aGceiVRva---------------vp~~~~A~al~~I~~~~~iP-lVADIHF-d~----~lA----l~a~-~~g~dk 96 (346)
T TIGR00612 43 LEEAGCDIVRVT---------------VPDRESAAAFEAIKEGTNVP-LVADIHF-DY----RLA----ALAM-AKGVAK 96 (346)
T ss_pred HHHcCCCEEEEc---------------CCCHHHHHhHHHHHhCCCCC-EEEeeCC-Cc----HHH----HHHH-HhccCe
Confidence 567899998653 22224456678889999999 9999999 57 234 3345 589999
Q ss_pred EEeCCC----CCCcHHHHHHHHHcCCcEEEeccccceeee--ecCCccccc-CCHH-HHHHHHHHHHHHHHcCCcEEEec
Q 022677 188 IKLEGG----SPSRITAARGIVEAGIAVMGHVGLTPQAIS--VLGGFRPQG-KNVT-SAVKVVETALALQEVGCFSVVLE 259 (293)
Q Consensus 188 VkiEgg----~~~~~~~ikal~~~GIpV~GHiGLtPq~~~--~lgGf~vqG-rt~~-~a~e~l~rA~a~eeAGA~~IvlE 259 (293)
+.|--| .+...+++++..+.|||.= ||++.-+.. .+. -.| .|.+ -.+.+++.++-+++.|=+=|++-
T Consensus 97 iRINPGNig~~e~v~~vv~~ak~~~ipIR--IGVN~GSL~~~~~~---kyg~~t~eamveSAl~~v~~le~~~F~diviS 171 (346)
T TIGR00612 97 VRINPGNIGFRERVRDVVEKARDHGKAMR--IGVNHGSLERRLLE---KYGDATAEAMVQSALEEAAILEKLGFRNVVLS 171 (346)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCcHHHHH---HcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 999866 2346688888999999985 454443221 111 123 3443 34789999999999999988877
Q ss_pred C----CCH--HHHHHHHHhcCCCEE-Ee-CCCCCCCcee
Q 022677 260 C----VPP--PVAAAATSALQIPTI-GI-GAGPFCSGQV 290 (293)
Q Consensus 260 ~----vp~--e~a~~It~~l~iPtI-GI-GaG~~~dGQv 290 (293)
+ ++. +.-+.++++.+-|+= |+ =||.+.+|-|
T Consensus 172 ~KsSdv~~~i~ayr~la~~~dyPLHlGVTEAG~~~~G~I 210 (346)
T TIGR00612 172 MKASDVAETVAAYRLLAERSDYPLHLGVTEAGMGVKGIV 210 (346)
T ss_pred EEcCCHHHHHHHHHHHHhhCCCCceeccccCCCCCCchh
Confidence 4 332 666778899998864 33 3787777754
No 126
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.22 E-value=0.24 Score=46.78 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=59.6
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCeEEeeCCC-CCCCCCHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~-~~p~vvaDmpf-Gsy~~s~e~av~~A~rl~k 181 (293)
-|+.++++|+|.+++. -|.-...+-++++.|.+.|++++ +.|+++=|.|. .++..+++.. .++.+
T Consensus 88 la~~a~~~Gad~v~v~---------~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i----~~L~~ 154 (290)
T TIGR00683 88 LGKYATELGYDCLSAV---------TPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQF----GELYK 154 (290)
T ss_pred HHHHHHHhCCCEEEEe---------CCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHH----HHHhc
Confidence 3578889999999874 23344557799999999999887 79999999993 4566776655 35555
Q ss_pred HhCCCEEEeCCCC
Q 022677 182 EGGMDAIKLEGGS 194 (293)
Q Consensus 182 eaGa~gVkiEgg~ 194 (293)
.-.+.|||-..+.
T Consensus 155 ~pnv~giK~s~~d 167 (290)
T TIGR00683 155 NPKVLGVKFTAGD 167 (290)
T ss_pred CCCEEEEEeCCCC
Confidence 4679999998764
No 127
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=95.20 E-value=0.55 Score=45.36 Aligned_cols=125 Identities=15% Similarity=0.119 Sum_probs=72.0
Q ss_pred hhCCCcE-EEEecCCH----HHHHHHHHcCCcEE-E-ECchhhhh-hccCCCCccCCHHHHHHHHHHHHcccCCCeEEee
Q 022677 88 HKNGEPI-TMVTAYDY----PSAVHLDSAGIDIC-L-VGDSAAMV-VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (293)
Q Consensus 88 ~~~g~pi-~m~tayD~----~SAriae~AG~Dai-l-vGdSla~~-~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaD 159 (293)
.....|+ +-+..-|. -.|+.++++|+|.| + .|-....+ .-||-....-..+.+...++++++.++.|+ .+=
T Consensus 61 ~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pV-svK 139 (333)
T PRK11815 61 DPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPV-TVK 139 (333)
T ss_pred CCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCce-EEE
Confidence 3334444 44444443 45777888999999 4 44333322 233333334455666777888888777774 432
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHHhCCCEEEeCCCC------C---------CcHHHHHHHHHc--CCcEEEe
Q 022677 160 LPFGTY-ESSTNQAVDTAVRILKEGGMDAIKLEGGS------P---------SRITAARGIVEA--GIAVMGH 214 (293)
Q Consensus 160 mpfGsy-~~s~e~av~~A~rl~keaGa~gVkiEgg~------~---------~~~~~ikal~~~--GIpV~GH 214 (293)
+-.|.. +.+.+++++.+..+ +++|++++.+-+.. . ...+.++.+.+. .|||++.
T Consensus 140 iR~g~~~~~t~~~~~~~~~~l-~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~n 211 (333)
T PRK11815 140 HRIGIDDQDSYEFLCDFVDTV-AEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEIN 211 (333)
T ss_pred EEeeeCCCcCHHHHHHHHHHH-HHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEE
Confidence 222111 13455666665554 57999999986421 0 124567777764 6999875
No 128
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.18 E-value=0.23 Score=47.84 Aligned_cols=100 Identities=21% Similarity=0.241 Sum_probs=61.7
Q ss_pred HHHHHHhhhCC--CcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCC-CCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 81 LTHLRQKHKNG--EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHD-TTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 81 ~~~Lr~l~~~g--~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~-dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
++.++++++.. -|+.+-|+-+.-.|+.+.++|+|+|.+|-+-+..+.+.. .....+.-..+..+...++..+.| |+
T Consensus 123 ~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vp-VI 201 (325)
T cd00381 123 IEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVP-VI 201 (325)
T ss_pred HHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCc-EE
Confidence 33445544433 344445899999999999999999988532222111111 112233334455556666656677 77
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEe
Q 022677 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (293)
Q Consensus 158 aDmpfGsy~~s~e~av~~A~rl~keaGa~gVki 190 (293)
+| |+. .+..++ .+.+ +.||++|.+
T Consensus 202 A~---GGI-~~~~di----~kAl-a~GA~~Vmi 225 (325)
T cd00381 202 AD---GGI-RTSGDI----VKAL-AAGADAVML 225 (325)
T ss_pred ec---CCC-CCHHHH----HHHH-HcCCCEEEe
Confidence 77 777 567777 3566 589999998
No 129
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.17 E-value=0.8 Score=47.08 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=95.9
Q ss_pred HHHHHHHcCCcEEEECchh-hhhhccCCCCccCCHHHHHHHHHHHHcccCCCeE---E--eeCCCCCCCCCHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSA-AMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL---V--GDLPFGTYESSTNQAVDTAV 177 (293)
Q Consensus 104 SAriae~AG~DailvGdSl-a~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~v---v--aDmpfGsy~~s~e~av~~A~ 177 (293)
-|...+++|++.|=+|... =-+++.|-+.. +|+.+ +.+++..++..+ . .+++ +|..-++++++.-+
T Consensus 32 ia~~ld~~G~~siE~~GGatfd~~~rfl~Ed--pwerl----r~lr~~~~nt~lqmL~Rg~N~v--Gy~~y~ddvv~~fv 103 (499)
T PRK12330 32 ACEDIDNAGYWSVECWGGATFDACIRFLNED--PWERL----RTFRKLMPNSRLQMLLRGQNLL--GYRHYEDEVVDRFV 103 (499)
T ss_pred HHHHHHhcCCCEEEecCCcchhhhhcccCCC--HHHHH----HHHHHhCCCCeEEEEEcccccC--CccCcchhHHHHHH
Confidence 5778899999999655222 12345554443 24333 444444333322 2 2333 35555678888777
Q ss_pred HHHHHhCCCEEEeCCCCCC---cHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCc
Q 022677 178 RILKEGGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCF 254 (293)
Q Consensus 178 rl~keaGa~gVkiEgg~~~---~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~ 254 (293)
+...+.|++.+.|=|.... ....++++.++|..+.+-+..|= + .....+..++-++.++++||+
T Consensus 104 ~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~-------s------p~~t~e~~~~~a~~l~~~Gad 170 (499)
T PRK12330 104 EKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTV-------S------PIHTVEGFVEQAKRLLDMGAD 170 (499)
T ss_pred HHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEec-------C------CCCCHHHHHHHHHHHHHcCCC
Confidence 7766899999999987532 34567778888887766554311 0 011456788889999999999
Q ss_pred EEEecC-----CCH---HHHHHHHHhc--CCCE
Q 022677 255 SVVLEC-----VPP---PVAAAATSAL--QIPT 277 (293)
Q Consensus 255 ~IvlE~-----vp~---e~a~~It~~l--~iPt 277 (293)
.|-+-= .|. ++.+.|.+++ ++|+
T Consensus 171 ~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI 203 (499)
T PRK12330 171 SICIKDMAALLKPQPAYDIVKGIKEACGEDTRI 203 (499)
T ss_pred EEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeE
Confidence 999872 242 5666777777 4664
No 130
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=95.16 E-value=0.47 Score=49.53 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=90.0
Q ss_pred HcCCcEEEECchhhhhhccCCCCc-cCCHHHHHHHHHHHHccc--CCCeEEeeC-CCCCC---C-CCHHHHHHH---HHH
Q 022677 110 SAGIDICLVGDSAAMVVHGHDTTL-PITLEEMLVHCRAVARGA--KRPLLVGDL-PFGTY---E-SSTNQAVDT---AVR 178 (293)
Q Consensus 110 ~AG~DailvGdSla~~~lG~~dt~-~vtl~eml~h~raV~Ra~--~~p~vvaDm-pfGsy---~-~s~e~av~~---A~r 178 (293)
+||+|+|.+ .+..++..++...+ .-..+++...+-.++|.+ ..++|.+++ |+|.| + .+.++..+. -++
T Consensus 54 ~AGAdvi~T-nTy~as~~~l~~~g~~~~~~~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~~~~~~~~~~~~~~~~~~~ 132 (612)
T PRK08645 54 EAGADVIQT-NTFGANRIKLKRYGLEDKVKEINRAAVRLAREAAGDDVYVAGTIGPIGGRGPLGDISLEEIRREFREQID 132 (612)
T ss_pred HhCCCEEec-CcccccHHHHHhcCchHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 578998776 34444322222211 112567766655555543 246788999 66655 2 245554332 234
Q ss_pred HHHHhCCCEEEeCCCCC--CcHHHHHHHHHcC-CcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcE
Q 022677 179 ILKEGGMDAIKLEGGSP--SRITAARGIVEAG-IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFS 255 (293)
Q Consensus 179 l~keaGa~gVkiEgg~~--~~~~~ikal~~~G-IpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~ 255 (293)
.+.++|+|.+-+|-... +...+++++.+.+ +|++-=+ +.. .+|...-|.+.+++.+.+ .+.|+++
T Consensus 133 ~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~~Sf--~~~----~~g~l~~G~~~~~~~~~~------~~~~~~a 200 (612)
T PRK08645 133 ALLEEGVDGLLLETFYDLEELLLALEAAREKTDLPIIAQV--AFH----EDGVTQNGTSLEEALKEL------VAAGADV 200 (612)
T ss_pred HHHhcCCCEEEEEccCCHHHHHHHHHHHHHhCCCcEEEEE--EEC----CCCeeCCCCCHHHHHHHH------HhCCCCE
Confidence 44479999999997542 2334566666665 8887432 221 223444565544443333 3578999
Q ss_pred EEecCCC-HH----HHHHHHHhcCCCEEEeCC
Q 022677 256 VVLECVP-PP----VAAAATSALQIPTIGIGA 282 (293)
Q Consensus 256 IvlE~vp-~e----~a~~It~~l~iPtIGIGa 282 (293)
+-+-|.. ++ +++.+....++|++..-.
T Consensus 201 vGiNC~~~p~~~~~~l~~l~~~~~~pl~vypN 232 (612)
T PRK08645 201 VGLNCGLGPYHMLEALERIPIPENAPLSAYPN 232 (612)
T ss_pred EEecCCCCHHHHHHHHHHHHhccCceEEEEEC
Confidence 9999984 43 333444445678886544
No 131
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.12 E-value=0.25 Score=49.63 Aligned_cols=91 Identities=20% Similarity=0.179 Sum_probs=61.5
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccC-CCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCH
Q 022677 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGH-DTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (293)
Q Consensus 91 g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~-~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~ 169 (293)
.-|+.+=|+-+.-.|+.+-++|+|+|-||=+.+..+..- -+...++--..+..+..+++..+.| |++| |+. .++
T Consensus 265 ~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vp-viad---GGi-~~~ 339 (450)
T TIGR01302 265 DLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIP-VIAD---GGI-RYS 339 (450)
T ss_pred CCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCe-EEEe---CCC-CCH
Confidence 355555599999999999999999998873332221110 0111223335566777777767777 8899 777 467
Q ss_pred HHHHHHHHHHHHHhCCCEEEeC
Q 022677 170 NQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 170 e~av~~A~rl~keaGa~gVkiE 191 (293)
.++ .+.+ +.||++|.+=
T Consensus 340 ~di----~kAl-a~GA~~V~~G 356 (450)
T TIGR01302 340 GDI----VKAL-AAGADAVMLG 356 (450)
T ss_pred HHH----HHHH-HcCCCEEEEC
Confidence 777 3567 6899999984
No 132
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.11 E-value=0.33 Score=45.43 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------CcHHHHHHHHH---cCCcEEEeccccceeeeecCCcccccCCH
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP--------SRITAARGIVE---AGIAVMGHVGLTPQAISVLGGFRPQGKNV 235 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~--------~~~~~ikal~~---~GIpV~GHiGLtPq~~~~lgGf~vqGrt~ 235 (293)
.+.+...+.+.+++ +.|++||-+=|... +...+++..++ ..+||+.|++ .
T Consensus 16 iD~~~~~~~i~~l~-~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~------------------~ 76 (285)
T TIGR00674 16 VDFAALEKLIDFQI-ENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG------------------S 76 (285)
T ss_pred cCHHHHHHHHHHHH-HcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC------------------C
Confidence 45555555555555 68999999877521 12233333332 2367776543 2
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHHhcCCCEEEeC
Q 022677 236 TSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSALQIPTIGIG 281 (293)
Q Consensus 236 ~~a~e~l~rA~a~eeAGA~~IvlE~v----p--~e~---a~~It~~l~iPtIGIG 281 (293)
...++.++.|+..+++|||++++-.. | +++ .+.|++++++|++-.-
T Consensus 77 ~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn 131 (285)
T TIGR00674 77 NATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYN 131 (285)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 24578999999999999999987643 2 344 4557888899998664
No 133
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=95.08 E-value=0.84 Score=43.92 Aligned_cols=162 Identities=20% Similarity=0.193 Sum_probs=89.2
Q ss_pred HHHhhhCCCcEEEE---ecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC
Q 022677 84 LRQKHKNGEPITMV---TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (293)
Q Consensus 84 Lr~l~~~g~pi~m~---tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm 160 (293)
|-+++.-.-||+.- .+-+.-.|..+.+||.=-++ .....+.+++-...+.++..++.| +.+++
T Consensus 4 ~t~~lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l-------------~~~~~~~~~l~~~i~~~~~~t~~p-fgvnl 69 (330)
T PF03060_consen 4 LTELLGIKYPIIQAPMGGISTPELAAAVSNAGGLGFL-------------GAGGLTPEQLREEIRKIRALTDKP-FGVNL 69 (330)
T ss_dssp HHHHHT-SSSEEE---TTTSSHHHHHHHHHTTSBEEE-------------ECTTSSHHHHHHHHHHHHHH-SS--EEEEE
T ss_pred HHHHhCCCcCEEcCCCCCCChHHHHHHHHhCCCEeec-------------cccccChHHHHHHHHHHHhhcccc-ccccc
Confidence 44555445566532 33344444444555532111 123455678877778888778777 56676
Q ss_pred CCCCCCCCHHHH--------HHHHHHHHHHhC--------------CCEEEeCCCCCCcHHHHHHHHHcCCcEEEecccc
Q 022677 161 PFGTYESSTNQA--------VDTAVRILKEGG--------------MDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLT 218 (293)
Q Consensus 161 pfGsy~~s~e~a--------v~~A~rl~keaG--------------a~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLt 218 (293)
.+. . .+.... -....++..+.| ++.|.+-.|.. ..+.++++.+.||+++..++
T Consensus 70 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p-~~~~i~~l~~~gi~v~~~v~-- 144 (330)
T PF03060_consen 70 FLP-P-PDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLP-PPEVIERLHAAGIKVIPQVT-- 144 (330)
T ss_dssp ETT-S-TTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC--HHHHHHHHHTT-EEEEEES--
T ss_pred ccc-C-cccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccc-hHHHHHHHHHcCCccccccC--
Confidence 652 3 222222 111122222334 44888876653 25678889999999985432
Q ss_pred ceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC----------C--HHHHHHHHHhcCCCEEEeCCCCCC
Q 022677 219 PQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV----------P--PPVAAAATSALQIPTIGIGAGPFC 286 (293)
Q Consensus 219 Pq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v----------p--~e~a~~It~~l~iPtIGIGaG~~~ 286 (293)
| ++.|+..+++|+|+|++|+. . ..+...+.+.+++|+|. ||.=+
T Consensus 145 ---------------s-------~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPVia--AGGI~ 200 (330)
T PF03060_consen 145 ---------------S-------VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIA--AGGIA 200 (330)
T ss_dssp ---------------S-------HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEE--ESS--
T ss_pred ---------------C-------HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEE--ecCcC
Confidence 2 45678889999999999964 1 36778899999999984 44444
Q ss_pred Cc
Q 022677 287 SG 288 (293)
Q Consensus 287 dG 288 (293)
||
T Consensus 201 dg 202 (330)
T PF03060_consen 201 DG 202 (330)
T ss_dssp SH
T ss_pred CH
Confidence 44
No 134
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=95.07 E-value=1.7 Score=40.80 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=70.4
Q ss_pred HHHhhhCCC--cEEEEecC--CHHH----HHHHHHcCCcEEEECchh---------hhhhccCCCCccCCHHHHHHHHHH
Q 022677 84 LRQKHKNGE--PITMVTAY--DYPS----AVHLDSAGIDICLVGDSA---------AMVVHGHDTTLPITLEEMLVHCRA 146 (293)
Q Consensus 84 Lr~l~~~g~--pi~m~tay--D~~S----Ariae~AG~DailvGdSl---------a~~~lG~~dt~~vtl~eml~h~ra 146 (293)
|++++++++ .+.-+|+= |..+ ++..++.|+|+|=+|--. ...+.-..=-..+++++.+..++.
T Consensus 3 ~~~~~~~~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~ 82 (258)
T PRK13111 3 FAALKAEGRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVRE 82 (258)
T ss_pred hHHHHhcCCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444444444 44555553 3322 455677899999665332 111100000133688899999999
Q ss_pred HH-cccCCCeEEeeCCCCCCCCCHHH-HHHHHHHHHHHhCCCEEEeCCCC-CCcHHHHHHHHHcCCcEE
Q 022677 147 VA-RGAKRPLLVGDLPFGTYESSTNQ-AVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (293)
Q Consensus 147 V~-Ra~~~p~vvaDmpfGsy~~s~e~-av~~A~rl~keaGa~gVkiEgg~-~~~~~~ikal~~~GIpV~ 212 (293)
++ +..+.|++. | +|-...-+ .++.-.+..+++|++|+-+=|=. ++..+.++++.+.|+...
T Consensus 83 ~r~~~~~~p~vl--m---~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 83 IREKDPTIPIVL--M---TYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred HHhcCCCCCEEE--E---ecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEE
Confidence 98 556677542 2 23111111 33333556678999999997732 224466677788888876
No 135
>PRK00208 thiG thiazole synthase; Reviewed
Probab=95.07 E-value=0.2 Score=47.13 Aligned_cols=94 Identities=23% Similarity=0.237 Sum_probs=63.9
Q ss_pred CCHHHHHHhhhCCCcEEE-EecCCHHHHHHHHHcCCcEEEE-CchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeE
Q 022677 79 VTLTHLRQKHKNGEPITM-VTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (293)
Q Consensus 79 ~t~~~Lr~l~~~g~pi~m-~tayD~~SAriae~AG~Dailv-GdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~v 156 (293)
-|++.-+.+.++| ..++ .++=|...|+-++++|+|++.. |.-.| .-.|..+ .|++ +.|++..+.| |
T Consensus 111 ~tv~aa~~L~~~G-f~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIG-sg~gi~~------~~~i---~~i~e~~~vp-V 178 (250)
T PRK00208 111 ETLKAAEILVKEG-FVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIG-SGLGLLN------PYNL---RIIIEQADVP-V 178 (250)
T ss_pred HHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCC-CCCCCCC------HHHH---HHHHHhcCCe-E
Confidence 4566666666555 5678 7889999999999999999964 32222 2234333 4444 4455545667 8
Q ss_pred EeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 022677 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (293)
Q Consensus 157 vaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg 193 (293)
++| |+. .+++++ .+.+ |.|+++|-+-.+
T Consensus 179 Ive---aGI-~tpeda----~~Am-elGAdgVlV~SA 206 (250)
T PRK00208 179 IVD---AGI-GTPSDA----AQAM-ELGADAVLLNTA 206 (250)
T ss_pred EEe---CCC-CCHHHH----HHHH-HcCCCEEEEChH
Confidence 888 566 478888 4567 699999988654
No 136
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.06 E-value=0.42 Score=44.76 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------CcHHHHHHHH---HcCCcEEEeccccceeeeecCCcccccCCH
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP--------SRITAARGIV---EAGIAVMGHVGLTPQAISVLGGFRPQGKNV 235 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~--------~~~~~ikal~---~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~ 235 (293)
.+.+..-+.+ +.+.+.|++|+-+=|... +...+++..+ +..+|++.|++ .
T Consensus 19 iD~~~l~~~i-~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~------------------~ 79 (292)
T PRK03170 19 VDFAALRKLV-DYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG------------------S 79 (292)
T ss_pred cCHHHHHHHH-HHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC------------------C
Confidence 4555444444 444478999999877531 1122333232 22477776644 1
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCC-----C-HHHH---HHHHHhcCCCEEEeC
Q 022677 236 TSAVKVVETALALQEVGCFSVVLECV-----P-PPVA---AAATSALQIPTIGIG 281 (293)
Q Consensus 236 ~~a~e~l~rA~a~eeAGA~~IvlE~v-----p-~e~a---~~It~~l~iPtIGIG 281 (293)
....+.++.|+.++++|+|++++-.. + +++. +.|++.+++|++-.-
T Consensus 80 ~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn 134 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 23478899999999999999998432 1 3444 446778889999663
No 137
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=95.06 E-value=0.38 Score=45.60 Aligned_cols=94 Identities=26% Similarity=0.314 Sum_probs=65.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHh-------CCCEEEeCC---CCC------CcHHHHHHHHHcCCcEEEeccccceeeeecC
Q 022677 163 GTYESSTNQAVDTAVRILKEG-------GMDAIKLEG---GSP------SRITAARGIVEAGIAVMGHVGLTPQAISVLG 226 (293)
Q Consensus 163 Gsy~~s~e~av~~A~rl~kea-------Ga~gVkiEg---g~~------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lg 226 (293)
|.| |.+||++.| ++-+|. |-+-||||- ... ......+.|++.|..|+-.+-
T Consensus 79 Gc~--tA~EAv~~A-~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~---------- 145 (267)
T CHL00162 79 GCQ--TAEEAIRMA-FLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYIN---------- 145 (267)
T ss_pred CCC--CHHHHHHHH-HHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCC----------
Confidence 455 899999997 444454 478999993 221 123445667888888874321
Q ss_pred CcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC---------HHHHHHHHHhcCCCEEEeCCC
Q 022677 227 GFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP---------PPVAAAATSALQIPTIGIGAG 283 (293)
Q Consensus 227 Gf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp---------~e~a~~It~~l~iPtIGIGaG 283 (293)
+ + .--|++++++||-+|..=+-| +..++.|.++.++|+| ++||
T Consensus 146 --------~-D----~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVi-vdAG 197 (267)
T CHL00162 146 --------A-D----PMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVI-IDAG 197 (267)
T ss_pred --------C-C----HHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEE-EeCC
Confidence 1 1 336899999999999865443 5788999999999998 4444
No 138
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.04 E-value=0.23 Score=48.37 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=56.3
Q ss_pred cEEEE-ecCCHHHHHHHHHcCCcEEEECchhhhhhcc-CCCCcc-CCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCH
Q 022677 93 PITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHG-HDTTLP-ITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (293)
Q Consensus 93 pi~m~-tayD~~SAriae~AG~DailvGdSla~~~lG-~~dt~~-vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~ 169 (293)
++++. ++=+.-.|+.+.++|+|++.+|-.-+..+.- ...... -+| .+..++.+++..+.| |++| |+. .++
T Consensus 141 ~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w--~l~ai~~~~~~~~ip-VIAd---GGI-~~~ 213 (326)
T PRK05458 141 TFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGW--QLAALRWCAKAARKP-IIAD---GGI-RTH 213 (326)
T ss_pred CeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCcc--HHHHHHHHHHHcCCC-EEEe---CCC-CCH
Confidence 45555 6889999999999999999988555432100 000001 111 233344455555677 8899 777 577
Q ss_pred HHHHHHHHHHHHHhCCCEEEeCC
Q 022677 170 NQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 170 e~av~~A~rl~keaGa~gVkiEg 192 (293)
.+++ +.+ +.||++|.+-+
T Consensus 214 ~Di~----KaL-a~GA~aV~vG~ 231 (326)
T PRK05458 214 GDIA----KSI-RFGATMVMIGS 231 (326)
T ss_pred HHHH----HHH-HhCCCEEEech
Confidence 8874 566 57999998854
No 139
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=95.03 E-value=0.93 Score=45.03 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=86.3
Q ss_pred HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 022677 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (293)
Q Consensus 107 iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~ 186 (293)
.+.+.|+|.|=+|... ...+-...++.+++..+.++++.|+-+-.. ++.- ++...+.|++
T Consensus 24 ~~~~~Gv~~ie~g~p~-------------~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~---g~~~----v~~a~~aGAd 83 (430)
T PRK07028 24 EAVAGGADWIEAGTPL-------------IKSEGMNAIRTLRKNFPDHTIVADMKTMDT---GAIE----VEMAAKAGAD 83 (430)
T ss_pred HHHhcCCcEEEeCCHH-------------HHHhhHHHHHHHHHHCCCCEEEEEeeeccc---hHHH----HHHHHHcCCC
Confidence 3344799999654211 113336777888887777889999776433 2222 2344579999
Q ss_pred EEEeCCCCC--CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC---
Q 022677 187 AIKLEGGSP--SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV--- 261 (293)
Q Consensus 187 gVkiEgg~~--~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v--- 261 (293)
+|.+-+... .....++.+.+.|+++.--+ ++|. | .+++++.+.+.|+|.|.+...
T Consensus 84 gV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~-~s~~-------------t------~~e~~~~a~~~GaD~I~~~pg~~~ 143 (430)
T PRK07028 84 IVCILGLADDSTIEDAVRAARKYGVRLMADL-INVP-------------D------PVKRAVELEELGVDYINVHVGIDQ 143 (430)
T ss_pred EEEEecCCChHHHHHHHHHHHHcCCEEEEEe-cCCC-------------C------HHHHHHHHHhcCCCEEEEEeccch
Confidence 999865432 12356677788898876210 1221 1 134578888899999975521
Q ss_pred ----C--HHHHHHHHHhcCCCEEEeC
Q 022677 262 ----P--PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 262 ----p--~e~a~~It~~l~iPtIGIG 281 (293)
+ .+.++.+.+.+++|+..+|
T Consensus 144 ~~~~~~~~~~l~~l~~~~~iPI~a~G 169 (430)
T PRK07028 144 QMLGKDPLELLKEVSEEVSIPIAVAG 169 (430)
T ss_pred hhcCCChHHHHHHHHhhCCCcEEEEC
Confidence 1 3677888888899998877
No 140
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.03 E-value=0.21 Score=47.02 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=59.8
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCC-CCCCCCHHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpf-Gsy~~s~e~av~~A~rl~ke 182 (293)
-|+.++++|+|++++-- |--...+-++++.|.+.|+++++.|+++-|.|. .++..+++.. .++.+.
T Consensus 91 ~a~~a~~~Gad~v~v~~---------P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l----~~L~~~ 157 (293)
T PRK04147 91 LAKYATELGYDAISAVT---------PFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQF----NELFTL 157 (293)
T ss_pred HHHHHHHcCCCEEEEeC---------CcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHH----HHHhcC
Confidence 46888999999998642 223344679999999999999999999999994 3566777655 355544
Q ss_pred hCCCEEEeCCCC
Q 022677 183 GGMDAIKLEGGS 194 (293)
Q Consensus 183 aGa~gVkiEgg~ 194 (293)
-.+.|||...+.
T Consensus 158 pnvvgiK~s~~d 169 (293)
T PRK04147 158 PKVIGVKQTAGD 169 (293)
T ss_pred CCEEEEEeCCCC
Confidence 589999998765
No 141
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.03 E-value=0.23 Score=45.93 Aligned_cols=96 Identities=22% Similarity=0.287 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEeCCCC--------CCcHHHHHHHHH---cCCcEEEeccccceeeeecCCcccccCC
Q 022677 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (293)
Q Consensus 166 ~~s~e~av~~A~rl~keaGa~gVkiEgg~--------~~~~~~ikal~~---~GIpV~GHiGLtPq~~~~lgGf~vqGrt 234 (293)
+.+.+...+.+..++ +.|++||-+=|.. ++...+++...+ ..+|++.|++
T Consensus 14 ~iD~~~~~~~i~~l~-~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~------------------ 74 (281)
T cd00408 14 EVDLDALRRLVEFLI-EAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG------------------ 74 (281)
T ss_pred CcCHHHHHHHHHHHH-HcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC------------------
Confidence 345555555544444 6899999988752 112233443333 2477776654
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCC-----C-HHH---HHHHHHhcCCCEEEe
Q 022677 235 VTSAVKVVETALALQEVGCFSVVLECV-----P-PPV---AAAATSALQIPTIGI 280 (293)
Q Consensus 235 ~~~a~e~l~rA~a~eeAGA~~IvlE~v-----p-~e~---a~~It~~l~iPtIGI 280 (293)
.....+.++.++..+++|||++++-.. + +++ .+.|.+.+++|++-.
T Consensus 75 ~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iY 129 (281)
T cd00408 75 ANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILY 129 (281)
T ss_pred CccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 113357899999999999999998543 1 233 355777889999965
No 142
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=95.02 E-value=0.39 Score=47.26 Aligned_cols=126 Identities=18% Similarity=0.095 Sum_probs=76.9
Q ss_pred HHHHHHHHcccCCCeEEe-eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC----C----cHHHHHHHHHcCCcE
Q 022677 141 LVHCRAVARGAKRPLLVG-DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP----S----RITAARGIVEAGIAV 211 (293)
Q Consensus 141 l~h~raV~Ra~~~p~vva-DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~----~----~~~~ikal~~~GIpV 211 (293)
+.=.|.+...-++|++.. =-|.+ +.|+++..+.+.+++ ++|+|+||.-+... . ....++...+.--..
T Consensus 118 i~g~R~~~gv~~rPli~Ti~kp~~--gld~~~la~~~~~l~-~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~ 194 (367)
T cd08205 118 IEGLRRLLGVHDRPLLGTIIKPSI--GLSPEELAELAYELA-LGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEE 194 (367)
T ss_pred chhHHHHhCCCCCCeeeeeeCCCC--CCCHHHHHHHHHHHH-hcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHh
Confidence 344577777778887663 22443 458999999999988 69999999866421 1 111111111100000
Q ss_pred EEeccccceeeeecCCccc-c-cCCHHHHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHHhcCCCEEEeCCC
Q 022677 212 MGHVGLTPQAISVLGGFRP-Q-GKNVTSAVKVVETALALQEVGCFSVVLECVP--PPVAAAATSALQIPTIGIGAG 283 (293)
Q Consensus 212 ~GHiGLtPq~~~~lgGf~v-q-Grt~~~a~e~l~rA~a~eeAGA~~IvlE~vp--~e~a~~It~~l~iPtIGIGaG 283 (293)
.|+-++ . +-|. ..+|++++++..+++||+++.+-.+. -...+.+.+.-++|+.+-=++
T Consensus 195 -------------TG~~~~y~~nit~-~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~~~~lpi~~H~a~ 256 (367)
T cd08205 195 -------------TGRKTLYAPNITG-DPDELRRRADRAVEAGANALLINPNLVGLDALRALAEDPDLPIMAHPAF 256 (367)
T ss_pred -------------hCCcceEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHhcCCCeEEEccCc
Confidence 011000 1 1122 23899999999999999999987665 234456666668999876666
No 143
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=94.95 E-value=0.87 Score=41.39 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE-eeCCCCCCCCCHHHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 103 ~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv-aDmpfGsy~~s~e~av~~A~rl~k 181 (293)
-.|+.++..|.-.|-.. | ..+.++|+..++.|.+- .--.|..++.-..-+++.+..++
T Consensus 3 ~mA~Aa~~gGA~giR~~--------~------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~- 61 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRAN--------G------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALA- 61 (192)
T ss_dssp HHHHHHHHCT-SEEEEE--------S------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHH-
T ss_pred HHHHHHHHCCceEEEcC--------C------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHH-
Confidence 36888899999999542 1 67889999999999554 22223333333344666667888
Q ss_pred HhCCCEEEeCCCC----CCcHHHHHHHHHcCCcEEEec
Q 022677 182 EGGMDAIKLEGGS----PSRITAARGIVEAGIAVMGHV 215 (293)
Q Consensus 182 eaGa~gVkiEgg~----~~~~~~ikal~~~GIpV~GHi 215 (293)
++|++.|-|..-. +...++++.+.+.+..+|+-+
T Consensus 62 ~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADi 99 (192)
T PF04131_consen 62 EAGADIIALDATDRPRPETLEELIREIKEKYQLVMADI 99 (192)
T ss_dssp HCT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-
T ss_pred HcCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeec
Confidence 6999999997643 225678888999998888765
No 144
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.94 E-value=0.31 Score=47.14 Aligned_cols=99 Identities=23% Similarity=0.243 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCC------------------CCcHHHHHHHHHcC--CcEEEeccccceeeeecC
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGS------------------PSRITAARGIVEAG--IAVMGHVGLTPQAISVLG 226 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~------------------~~~~~~ikal~~~G--IpV~GHiGLtPq~~~~lg 226 (293)
.+++...++|.. +.+-|++.|.|--|. +.+..+++++.++. |||.-=+.
T Consensus 76 sdp~~l~eaA~~-~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiR---------- 144 (323)
T COG0042 76 SDPELLAEAAKI-AEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIR---------- 144 (323)
T ss_pred CCHHHHHHHHHH-HHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEe----------
Confidence 567767666655 557889999998764 12446777777766 88863322
Q ss_pred CcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC----------HHHHHHHHHhcC-CCEEEeC
Q 022677 227 GFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP----------PPVAAAATSALQ-IPTIGIG 281 (293)
Q Consensus 227 Gf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp----------~e~a~~It~~l~-iPtIGIG 281 (293)
.|-++.+ ....+-++.++++||++|.|-+=. -+.++.+.+.++ +|+|+=|
T Consensus 145 ----lG~d~~~-~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NG 205 (323)
T COG0042 145 ----LGWDDDD-ILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANG 205 (323)
T ss_pred ----cccCccc-ccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCC
Confidence 2333333 346678999999999999998754 267899999999 8988644
No 145
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=94.92 E-value=0.46 Score=49.62 Aligned_cols=162 Identities=22% Similarity=0.242 Sum_probs=97.5
Q ss_pred EEecCCHHHHHHHHHcCCcEEEECch-hhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEee------CCCCCCCCC
Q 022677 96 MVTAYDYPSAVHLDSAGIDICLVGDS-AAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD------LPFGTYESS 168 (293)
Q Consensus 96 m~tayD~~SAriae~AG~DailvGdS-la~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaD------mpfGsy~~s 168 (293)
+.+..-..-|...+++|++.|=++.. --.+++.|-+. +-.+..+.+++..++..+.+= ..|..|
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~e------dp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~y--- 93 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNE------DPWERLRKLKKALPNTPLQMLLRGQNLVGYRHY--- 93 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCc------cHHHHHHHHHHhCCCCEEEEEeccccccccccc---
Confidence 33444445677889999999955422 12233444333 223444556555443323321 233344
Q ss_pred HHHHHHHHHHHHHHhCCCEEEeCCCCCC---cHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHH
Q 022677 169 TNQAVDTAVRILKEGGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETA 245 (293)
Q Consensus 169 ~e~av~~A~rl~keaGa~gVkiEgg~~~---~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA 245 (293)
++++++.-++...+.|++.+.+-+.... ....++.+.+.|..+.+-+..+- +- + ...+..++-+
T Consensus 94 pd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~------~p-----~--~t~~~~~~~a 160 (592)
T PRK09282 94 PDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTT------SP-----V--HTIEKYVELA 160 (592)
T ss_pred cchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEecc------CC-----C--CCHHHHHHHH
Confidence 5666666566666799999999987532 33456777888988876653221 00 1 1356778889
Q ss_pred HHHHHcCCcEEEec-----CCCH---HHHHHHHHhcCCCEEEe
Q 022677 246 LALQEVGCFSVVLE-----CVPP---PVAAAATSALQIPTIGI 280 (293)
Q Consensus 246 ~a~eeAGA~~IvlE-----~vp~---e~a~~It~~l~iPtIGI 280 (293)
+++.++||+.|.+- +.|. ++.+.+.+++++| |+|
T Consensus 161 ~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~p-i~~ 202 (592)
T PRK09282 161 KELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLP-VQL 202 (592)
T ss_pred HHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCe-EEE
Confidence 99999999999987 2342 5666777777766 354
No 146
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=94.92 E-value=1.9 Score=40.42 Aligned_cols=168 Identities=16% Similarity=0.097 Sum_probs=96.8
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHH--HHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeE
Q 022677 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHL--DSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (293)
Q Consensus 79 ~t~~~Lr~l~~~g~pi~m~tayD~~SAria--e~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~v 156 (293)
.|-+.|++..+.+. ||..-.+.. .++|+|+|=+|-. .+..-..+.|...++.+...++.| +
T Consensus 10 ~~~~~~~~~~~~~d-------~~~i~~~A~~~~~~GAdiIDVg~~---------~~~~eE~~r~~~~v~~l~~~~~~p-l 72 (261)
T PRK07535 10 GTRKSIAEAIEAKD-------AAFIQKLALKQAEAGADYLDVNAG---------TAVEEEPETMEWLVETVQEVVDVP-L 72 (261)
T ss_pred hhhHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCEEEECCC---------CCchhHHHHHHHHHHHHHHhCCCC-E
Confidence 44566777766654 344444433 3679999988733 123344677888888887767777 7
Q ss_pred EeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC-CCcHHHHHHHHHcCCcEEE-eccccceeeeecCCcccccCC
Q 022677 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMG-HVGLTPQAISVLGGFRPQGKN 234 (293)
Q Consensus 157 vaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~-~~~~~~ikal~~~GIpV~G-HiGLtPq~~~~lgGf~vqGrt 234 (293)
+.|... .++++.|.+.++ |++.||==.+. +......+.+.+.|.|++. |.. .. | .-+|
T Consensus 73 sIDT~~-------~~v~eaaL~~~~--G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~-------~~-g---~P~t 132 (261)
T PRK07535 73 CIDSPN-------PAAIEAGLKVAK--GPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMD-------DT-G---IPKD 132 (261)
T ss_pred EEeCCC-------HHHHHHHHHhCC--CCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecC-------CC-C---CCCC
Confidence 889553 346665555552 88888743332 2234555667788999996 421 00 0 1123
Q ss_pred HH-HHHHHHHHHHHHHHcCC---cEEEecCCC------------HHHHHHHHHhc-CCCEEEeCCCC
Q 022677 235 VT-SAVKVVETALALQEVGC---FSVVLECVP------------PPVAAAATSAL-QIPTIGIGAGP 284 (293)
Q Consensus 235 ~~-~a~e~l~rA~a~eeAGA---~~IvlE~vp------------~e~a~~It~~l-~iPtIGIGaG~ 284 (293)
.+ ..+.+-+....+.++|- +.++=+++- -+.++.+.+.+ +.|+. +|-++
T Consensus 133 ~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l-~G~Sn 198 (261)
T PRK07535 133 AEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTT-CGLSN 198 (261)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEE-EEeCC
Confidence 32 23344445566779999 444433321 13345565666 68876 44443
No 147
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=94.91 E-value=1 Score=41.74 Aligned_cols=124 Identities=14% Similarity=0.200 Sum_probs=73.4
Q ss_pred HHHHHcCCcEEE--ECchhh-hhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHH
Q 022677 106 VHLDSAGIDICL--VGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 106 riae~AG~Dail--vGdSla-~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ke 182 (293)
..+++ ++|+|= .|=... ++..|+-....-..+.+...+++|+. .+.| |.+=|.-| + +.++.++.|.++. +
T Consensus 87 ~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~P-VsvKiR~~-~--~~~~~~~~a~~l~-~ 159 (231)
T TIGR00736 87 LTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKP-IFVKIRGN-C--IPLDELIDALNLV-D 159 (231)
T ss_pred HHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCc-EEEEeCCC-C--CcchHHHHHHHHH-H
Confidence 44444 788883 332221 11223322233355566667777764 4677 77777753 3 2345666665654 7
Q ss_pred hCCCEEEeCCCCC----CcHHHHHHHHHc--CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEE
Q 022677 183 GGMDAIKLEGGSP----SRITAARGIVEA--GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (293)
Q Consensus 183 aGa~gVkiEgg~~----~~~~~ikal~~~--GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~I 256 (293)
+|+++|.+..... -....++.+.++ .||+.|.=|+ +| .++|+++.++|||+|
T Consensus 160 aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI---------------~s-------~eda~e~l~~GAd~V 217 (231)
T TIGR00736 160 DGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSI---------------DD-------IESAKEMLKAGADFV 217 (231)
T ss_pred cCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCc---------------CC-------HHHHHHHHHhCCCeE
Confidence 9999999975432 135677888776 4999985221 34 345566666799998
Q ss_pred Ee
Q 022677 257 VL 258 (293)
Q Consensus 257 vl 258 (293)
-+
T Consensus 218 mv 219 (231)
T TIGR00736 218 SV 219 (231)
T ss_pred EE
Confidence 64
No 148
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.91 E-value=0.24 Score=46.63 Aligned_cols=94 Identities=22% Similarity=0.215 Sum_probs=65.0
Q ss_pred CCHHHHHHhhhCCCcEEE-EecCCHHHHHHHHHcCCcEEEE-CchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeE
Q 022677 79 VTLTHLRQKHKNGEPITM-VTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (293)
Q Consensus 79 ~t~~~Lr~l~~~g~pi~m-~tayD~~SAriae~AG~Dailv-GdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~v 156 (293)
-|++.-+.+.++| ..++ .++=|...|+-++++|++++.. |.-.+ .-.|..+ .|++. .|++..+.| |
T Consensus 111 ~tv~aa~~L~~~G-f~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIG-sg~Gi~~------~~~I~---~I~e~~~vp-V 178 (248)
T cd04728 111 ETLKAAEILVKEG-FTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIG-SGQGLLN------PYNLR---IIIERADVP-V 178 (248)
T ss_pred HHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCC-CCCCCCC------HHHHH---HHHHhCCCc-E
Confidence 4666667776655 4677 7888999999999999999964 33332 2234322 55554 444445667 8
Q ss_pred EeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 022677 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (293)
Q Consensus 157 vaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg 193 (293)
++| |+. .+++++ .+.+ |.|+++|-+-.+
T Consensus 179 I~e---gGI-~tpeda----~~Am-elGAdgVlV~SA 206 (248)
T cd04728 179 IVD---AGI-GTPSDA----AQAM-ELGADAVLLNTA 206 (248)
T ss_pred EEe---CCC-CCHHHH----HHHH-HcCCCEEEEChH
Confidence 888 667 478888 4567 699999988654
No 149
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=94.88 E-value=0.51 Score=44.64 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------CcHHHHHHH---HHcCCcEEEeccccceeeeecCCcccccCCH
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP--------SRITAARGI---VEAGIAVMGHVGLTPQAISVLGGFRPQGKNV 235 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~--------~~~~~ikal---~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~ 235 (293)
.+.+...+.+ +.+.+.|++|+-+-|... +...+++.. ++..+||+.|+| .
T Consensus 18 iD~~~l~~lv-~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~------------------~ 78 (294)
T TIGR02313 18 IDEEALRELI-EFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG------------------A 78 (294)
T ss_pred cCHHHHHHHH-HHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC------------------c
Confidence 3455454444 444478999999987531 122333333 344488887755 1
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHHhc-CCCEEEeCC
Q 022677 236 TSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSAL-QIPTIGIGA 282 (293)
Q Consensus 236 ~~a~e~l~rA~a~eeAGA~~IvlE~v----p--~e~---a~~It~~l-~iPtIGIGa 282 (293)
...++.++.++..+++|||++++-.. | +++ .+.|++.+ ++|++-.-.
T Consensus 79 ~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~ 135 (294)
T TIGR02313 79 LNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNI 135 (294)
T ss_pred chHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeC
Confidence 23467899999999999999998754 1 234 34578888 899997743
No 150
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.85 E-value=0.26 Score=47.04 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------CcHHHHHHH---HHcCCcEEEeccccceeeeecCCcccccCCH
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP--------SRITAARGI---VEAGIAVMGHVGLTPQAISVLGGFRPQGKNV 235 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~--------~~~~~ikal---~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~ 235 (293)
.|.+...+. ++.+.+.|++||-+=|... +...+++.. +.--+||..++| .
T Consensus 22 vD~~a~~~l-v~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g------------------~ 82 (299)
T COG0329 22 VDEEALRRL-VEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG------------------S 82 (299)
T ss_pred cCHHHHHHH-HHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC------------------C
Confidence 455544444 4444479999999988631 112222322 333377776644 2
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCCC------HH---HHHHHHHhcCCCEEEe
Q 022677 236 TSAVKVVETALALQEVGCFSVVLECVP------PP---VAAAATSALQIPTIGI 280 (293)
Q Consensus 236 ~~a~e~l~rA~a~eeAGA~~IvlE~vp------~e---~a~~It~~l~iPtIGI 280 (293)
...++.++.++..+++|+|++++=... ++ =.+.|.+++++|+|-.
T Consensus 83 ~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilY 136 (299)
T COG0329 83 NSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILY 136 (299)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEE
Confidence 234788999999999999999876432 23 3467889999998854
No 151
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=94.84 E-value=0.23 Score=46.96 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=60.3
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCeEEeeCCC-CCCCCCHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~-~~p~vvaDmpf-Gsy~~s~e~av~~A~rl~k 181 (293)
-|+.++++|+|++++. -|-....+-++++.|.+.|++++ +.|+++=|.|. -++..+++.. .++.+
T Consensus 87 ~a~~A~~~Gad~v~v~---------pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l----~~L~~ 153 (294)
T TIGR02313 87 LTKFAEEAGADAAMVI---------VPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTM----ARLRK 153 (294)
T ss_pred HHHHHHHcCCCEEEEc---------CccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHH----HHHHh
Confidence 4588899999999875 34444557799999999999999 89999999994 2466676655 35654
Q ss_pred H-hCCCEEEeCCCC
Q 022677 182 E-GGMDAIKLEGGS 194 (293)
Q Consensus 182 e-aGa~gVkiEgg~ 194 (293)
+ -.+.|||-..+.
T Consensus 154 ~~pnv~giK~ss~d 167 (294)
T TIGR02313 154 DCPNIVGAKESNKD 167 (294)
T ss_pred hCCCEEEEEeCCCC
Confidence 2 689999998765
No 152
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=94.82 E-value=1.5 Score=42.82 Aligned_cols=147 Identities=23% Similarity=0.254 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCC-CCCHHHHHHHHHHHH
Q 022677 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY-ESSTNQAVDTAVRIL 180 (293)
Q Consensus 102 ~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy-~~s~e~av~~A~rl~ 180 (293)
.--|+.++++|+.+.+ |+- ++ ++.+. +.....+.|++.++.-++++++.-... +.++++..+ +++++
T Consensus 80 ~~La~~a~~~G~~~~~-Gs~-~~---~~~~~------~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~-~~~~~ 147 (352)
T PRK05437 80 RKLAEAAEELGIAMGV-GSQ-RA---ALKDP------ELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQR-AVEMI 147 (352)
T ss_pred HHHHHHHHHcCCCeEe-ccc-Hh---hccCh------hhHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHH-HHHhc
Confidence 4567788999977654 432 11 23322 234444566666644446666643222 224555533 34545
Q ss_pred HHhCCCEEEeCC---------CCCC--cHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHH
Q 022677 181 KEGGMDAIKLEG---------GSPS--RITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALAL 248 (293)
Q Consensus 181 keaGa~gVkiEg---------g~~~--~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~ 248 (293)
++.+..+++.- .... ..+.++++++. ++||.-.. .|+ |.+ .+.|+.+
T Consensus 148 -~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~----------~g~---g~s-------~~~a~~l 206 (352)
T PRK05437 148 -EADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKE----------VGF---GIS-------KETAKRL 206 (352)
T ss_pred -CCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEe----------CCC---CCc-------HHHHHHH
Confidence 34455555511 1110 12567888876 89998431 111 333 5678899
Q ss_pred HHcCCcEEEecC---------------------------CC-HHHHHHHHHh-cCCCEEEeC
Q 022677 249 QEVGCFSVVLEC---------------------------VP-PPVAAAATSA-LQIPTIGIG 281 (293)
Q Consensus 249 eeAGA~~IvlE~---------------------------vp-~e~a~~It~~-l~iPtIGIG 281 (293)
+++|+|+|.+-+ +| .+.+..+.+. .++|+|+-|
T Consensus 207 ~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~G 268 (352)
T PRK05437 207 ADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASG 268 (352)
T ss_pred HHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEEC
Confidence 999999999833 34 2455556666 488988544
No 153
>PRK07534 methionine synthase I; Validated
Probab=94.79 E-value=1 Score=43.88 Aligned_cols=161 Identities=20% Similarity=0.204 Sum_probs=88.2
Q ss_pred HcCCcEEEECchhhhh--hccCCCCccCCHHHHHHHHHHHHccc----C-CCeEEeeCC-CCCCC-----CCHHHHHHH-
Q 022677 110 SAGIDICLVGDSAAMV--VHGHDTTLPITLEEMLVHCRAVARGA----K-RPLLVGDLP-FGTYE-----SSTNQAVDT- 175 (293)
Q Consensus 110 ~AG~DailvGdSla~~--~lG~~dt~~vtl~eml~h~raV~Ra~----~-~p~vvaDmp-fGsy~-----~s~e~av~~- 175 (293)
+||+|+|.+ .+..+. .|+... ..-.++++...+-.++|.+ . ..+|.++|+ +|.|- .+.+++.+.
T Consensus 56 ~AGAdiI~T-nTy~as~~~l~~~~-~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~~~~~e~~~~~ 133 (336)
T PRK07534 56 DAGSDIILT-NSFGGTAARLKLHD-AQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGALTHALAVEAF 133 (336)
T ss_pred HhcCCEEEe-cCcccCHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCCCCHHHHHHHH
Confidence 578999985 455443 333222 1112455544444433322 2 367779984 45431 244443322
Q ss_pred --HHHHHHHhCCCEEEeCCCCC--CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHc
Q 022677 176 --AVRILKEGGMDAIKLEGGSP--SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEV 251 (293)
Q Consensus 176 --A~rl~keaGa~gVkiEgg~~--~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeA 251 (293)
-++.+.++|||.+-+|=-.. +...+++++.+.++|++-.+-+. .+|...-|-+.+++.+.++. ..+
T Consensus 134 ~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~~~Pv~vSft~~------~~g~l~~G~~~~~~~~~~~~----~~~ 203 (336)
T PRK07534 134 HEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLAGMPWCGTMSFD------TAGRTMMGLTPADLADLVEK----LGE 203 (336)
T ss_pred HHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCeEEEEEEEC------CCCeeCCCCcHHHHHHHHHh----cCC
Confidence 23334478999999996532 23456677777899998664331 23444556665554444432 133
Q ss_pred CCcEEEecCCC-HH-HHHHHHH----hcCCCEEEeCC
Q 022677 252 GCFSVVLECVP-PP-VAAAATS----ALQIPTIGIGA 282 (293)
Q Consensus 252 GA~~IvlE~vp-~e-~a~~It~----~l~iPtIGIGa 282 (293)
+.++|-+=|.. ++ +.+.+.+ ..++|++..-.
T Consensus 204 ~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPN 240 (336)
T PRK07534 204 PPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGN 240 (336)
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 55999999995 43 4344333 33578775543
No 154
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=94.77 E-value=1.3 Score=41.28 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=67.5
Q ss_pred CCCeEE-ee--CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC--CCC-------CcHHHHHHHHHcCCcEEEeccccc
Q 022677 152 KRPLLV-GD--LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG--GSP-------SRITAARGIVEAGIAVMGHVGLTP 219 (293)
Q Consensus 152 ~~p~vv-aD--mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg--g~~-------~~~~~ikal~~~GIpV~GHiGLtP 219 (293)
+.++++ .| .+|+..+.+ +.-+..+.+.+ +.||++|.+-- +.. ....+.+...+.|+|+..+.. |
T Consensus 73 ~~~l~~~i~~~~~~~~~~~~-~~~~~~ve~A~-~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~--~ 148 (267)
T PRK07226 73 DVGLIVHLSASTSLSPDPND-KVLVGTVEEAI-KLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMY--P 148 (267)
T ss_pred CCcEEEEEcCCCCCCCCCCc-ceeeecHHHHH-HcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEe--c
Confidence 445444 44 555433222 33334445566 68999888752 211 111222323457999986531 1
Q ss_pred eeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHHhcCCCEEEeCC
Q 022677 220 QAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 220 q~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp-~e~a~~It~~l~iPtIGIGa 282 (293)
.|...-.+.+ .+++.+.++...++|||.|=..-.+ .+..+.+.+..++|+..+|+
T Consensus 149 -----~g~~~e~~~~---~~~i~~a~~~a~e~GAD~vKt~~~~~~~~l~~~~~~~~ipV~a~GG 204 (267)
T PRK07226 149 -----RGPGIKNEYD---PEVVAHAARVAAELGADIVKTNYTGDPESFREVVEGCPVPVVIAGG 204 (267)
T ss_pred -----CCCccCCCcc---HHHHHHHHHHHHHHCCCEEeeCCCCCHHHHHHHHHhCCCCEEEEeC
Confidence 1111001112 2344555678889999999887444 57888888888899998884
No 155
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.74 E-value=0.87 Score=46.40 Aligned_cols=70 Identities=29% Similarity=0.384 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 022677 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 102 ~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~k 181 (293)
.--+...-++|+|+|.+ |+. +|++ ..+ +...+.|+..-+.-+|++| +..+.|.+ ..++
T Consensus 227 ~~ra~~Lv~aGVd~i~~-D~a----~g~~----~~~---~~~i~~i~~~~~~~~vi~g-----~~~t~~~~----~~l~- 284 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVI-DTA----HGHQ----VKM---ISAIKAVRALDLGVPIVAG-----NVVSAEGV----RDLL- 284 (475)
T ss_pred HHHHHHHHHhCCCEEEE-eCC----CCCc----HHH---HHHHHHHHHHCCCCeEEEe-----ccCCHHHH----HHHH-
Confidence 34455555689999988 554 5666 233 4445566554433336662 33566766 4566
Q ss_pred HhCCCEEEeCCC
Q 022677 182 EGGMDAIKLEGG 193 (293)
Q Consensus 182 eaGa~gVkiEgg 193 (293)
++|||+|++-+|
T Consensus 285 ~~G~d~i~vg~g 296 (475)
T TIGR01303 285 EAGANIIKVGVG 296 (475)
T ss_pred HhCCCEEEECCc
Confidence 699999997665
No 156
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.74 E-value=0.35 Score=49.05 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=63.5
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccC-CCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCH
Q 022677 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGH-DTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (293)
Q Consensus 91 g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~-~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~ 169 (293)
+-|+.+=++-++-.|+.+.++|+|+|-+|-+-+..+.+- -+.-.++--+.+..++..++..+.| |++| |++ .++
T Consensus 269 ~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~-viad---GGi-~~~ 343 (486)
T PRK05567 269 DVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIP-VIAD---GGI-RYS 343 (486)
T ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCe-EEEc---CCC-CCH
Confidence 458888899999999999999999998875433221111 1122244445666666666655666 8899 777 577
Q ss_pred HHHHHHHHHHHHHhCCCEEEeC
Q 022677 170 NQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 170 e~av~~A~rl~keaGa~gVkiE 191 (293)
.+++ +.+ +.||++|.+=
T Consensus 344 ~di~----kAl-a~GA~~v~~G 360 (486)
T PRK05567 344 GDIA----KAL-AAGASAVMLG 360 (486)
T ss_pred HHHH----HHH-HhCCCEEEEC
Confidence 8874 456 5899999984
No 157
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=94.71 E-value=0.75 Score=43.44 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=92.8
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
-|+..+++|+|.|++-.-..+=. ..+..+.|..-|-.-+++|++..+.| +-+++=. .+...++. +-+.+
T Consensus 33 ea~~l~~~GvD~viveN~~d~P~--~~~~~p~tva~m~~i~~~v~~~~~~p-~GvnvL~----nd~~aal~----iA~a~ 101 (257)
T TIGR00259 33 DAMALEEGGVDAVMFENFFDAPF--LKEVDPETVAAMAVIAGQLKSDVSIP-LGINVLR----NDAVAALA----IAMAV 101 (257)
T ss_pred HHHHHHhCCCCEEEEecCCCCCC--cCCCCHHHHHHHHHHHHHHHHhcCCC-eeeeeec----CCCHHHHH----HHHHh
Confidence 57889999999999853222111 11455666778888889999999888 5566554 23345543 34568
Q ss_pred CCCEEEeCCC---------C-----CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHH
Q 022677 184 GMDAIKLEGG---------S-----PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (293)
Q Consensus 184 Ga~gVkiEgg---------~-----~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~e 249 (293)
|++-|..|.- . .+.....++|. ..|++++-+ .+.+...+ -.++- -+.++...
T Consensus 102 ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~-~~v~i~adV--~~kh~~~l-----~~~~~------~e~a~~~~ 167 (257)
T TIGR00259 102 GAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLG-SEVKILADI--VVKHAVHL-----GNRDL------ESIALDTV 167 (257)
T ss_pred CCCEEEEccEeeeEecccccccccHHHHHHHHHHcC-CCcEEEece--eecccCcC-----CCCCH------HHHHHHHH
Confidence 9999988631 0 01122223333 456666543 33222222 12332 23455544
Q ss_pred HcC-CcEEEecCC------CHHHHHHHHHhc-CCCEEEeCCCCC
Q 022677 250 EVG-CFSVVLECV------PPPVAAAATSAL-QIPTIGIGAGPF 285 (293)
Q Consensus 250 eAG-A~~IvlE~v------p~e~a~~It~~l-~iPtIGIGaG~~ 285 (293)
+-| ||+|.+-+. ..+.++.+.+.. ++|++ +|+|-.
T Consensus 168 ~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvl-lggGvt 210 (257)
T TIGR00259 168 ERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVL-AGSGVN 210 (257)
T ss_pred HhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEE-EECCCC
Confidence 555 999999873 247778887655 58975 888754
No 158
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.71 E-value=1.4 Score=42.59 Aligned_cols=124 Identities=14% Similarity=0.097 Sum_probs=74.1
Q ss_pred hCCCcE-EEEecCCH----HHHHHHHHcCCcEE-E-ECchhhhh-hccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC
Q 022677 89 KNGEPI-TMVTAYDY----PSAVHLDSAGIDIC-L-VGDSAAMV-VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (293)
Q Consensus 89 ~~g~pi-~m~tayD~----~SAriae~AG~Dai-l-vGdSla~~-~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm 160 (293)
....|+ +-+..-|. -.|+++++.|+|.| + .|=....+ .-|+-....-..+.+..-+++|+++++.| |++=+
T Consensus 52 ~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~P-VsvKi 130 (318)
T TIGR00742 52 PEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIP-VTVKH 130 (318)
T ss_pred CCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCC-eEEEE
Confidence 344454 33444443 35677888899998 3 44333322 22333444445666777888888888888 66655
Q ss_pred CCCCCC-CCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------C--------cHHHHHHHHH-c-CCcEEEe
Q 022677 161 PFGTYE-SSTNQAVDTAVRILKEGGMDAIKLEGGSP-------S--------RITAARGIVE-A-GIAVMGH 214 (293)
Q Consensus 161 pfGsy~-~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~--------~~~~ikal~~-~-GIpV~GH 214 (293)
--|-.. .+.+++++.+.. ++++|++.|-+.+... . ....++++.+ . .|||+|.
T Consensus 131 R~g~~~~~~~~~~~~~~~~-l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~N 201 (318)
T TIGR00742 131 RIGIDPLDSYEFLCDFVEI-VSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEIN 201 (318)
T ss_pred ecCCCCcchHHHHHHHHHH-HHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEE
Confidence 543111 234666666554 4579999999887531 0 1344666655 3 6999986
No 159
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=94.70 E-value=1.4 Score=42.90 Aligned_cols=148 Identities=20% Similarity=0.271 Sum_probs=85.1
Q ss_pred HHHHHHHcCCcEEEE--Cchhhhh--hccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLV--GDSAAMV--VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (293)
Q Consensus 104 SAriae~AG~Dailv--GdSla~~--~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl 179 (293)
-++..+++|+|.|=+ ||.++.. ..|++-.. +++.+....+.+ .. ..+.+.=+| | . .+.++ + +.
T Consensus 29 ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~--~~e~i~~~~~~~-~~--~~~~~ll~p-g-~-~~~~d-l----~~ 95 (333)
T TIGR03217 29 IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHT--DLEYIEAAADVV-KR--AKVAVLLLP-G-I-GTVHD-L----KA 95 (333)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCccccCCCCCCC--hHHHHHHHHHhC-CC--CEEEEEecc-C-c-cCHHH-H----HH
Confidence 356689999999955 4444433 33544332 344333322222 21 222222234 2 2 13333 2 23
Q ss_pred HHHhCCCEEEeCCCCC---CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEE
Q 022677 180 LKEGGMDAIKLEGGSP---SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (293)
Q Consensus 180 ~keaGa~gVkiEgg~~---~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~I 256 (293)
..+.|++.|.+-.... ...+.++.+.+.|..+++.+--. + +. .-+++++.++.++++||+.|
T Consensus 96 a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s---------~----~~--~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 96 AYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMS---------H----MT--PPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred HHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcc---------c----CC--CHHHHHHHHHHHHhcCCCEE
Confidence 3368999999875432 24567788889999998653211 1 12 23678899999999999999
Q ss_pred Eec-----CCCH---HHHHHHHHhcC--CCEEEe
Q 022677 257 VLE-----CVPP---PVAAAATSALQ--IPTIGI 280 (293)
Q Consensus 257 vlE-----~vp~---e~a~~It~~l~--iPtIGI 280 (293)
.+- ..|. +.++.+.+.++ +| |||
T Consensus 161 ~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~-ig~ 193 (333)
T TIGR03217 161 YIVDSAGAMLPDDVRDRVRALKAVLKPETQ-VGF 193 (333)
T ss_pred EEccCCCCCCHHHHHHHHHHHHHhCCCCce-EEE
Confidence 987 2353 45566666665 54 354
No 160
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=94.69 E-value=0.33 Score=46.49 Aligned_cols=89 Identities=17% Similarity=0.256 Sum_probs=57.0
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEE-CchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCC
Q 022677 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (293)
Q Consensus 83 ~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dailv-GdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmp 161 (293)
.++.+++.|. .++.++.+.-.|+.++++|+|+|.+ |- ..-||.. ..+. ....+.|++.++.| |+++
T Consensus 101 ~i~~lk~~g~-~v~~~v~s~~~a~~a~~~GaD~Ivv~g~----eagGh~g--~~~~---~~ll~~v~~~~~iP-viaa-- 167 (307)
T TIGR03151 101 YIPRLKENGV-KVIPVVASVALAKRMEKAGADAVIAEGM----ESGGHIG--ELTT---MALVPQVVDAVSIP-VIAA-- 167 (307)
T ss_pred HHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEEECc----ccCCCCC--CCcH---HHHHHHHHHHhCCC-EEEE--
Confidence 3455555554 5678899999999999999999974 42 1223321 1111 33445566667788 6666
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 162 fGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
|+. .+.+++ .+.+ +.||++|.+=
T Consensus 168 -GGI-~~~~~~----~~al-~~GA~gV~iG 190 (307)
T TIGR03151 168 -GGI-ADGRGM----AAAF-ALGAEAVQMG 190 (307)
T ss_pred -CCC-CCHHHH----HHHH-HcCCCEeecc
Confidence 556 355655 3456 4899999873
No 161
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.68 E-value=0.43 Score=44.88 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHH-hCCCEEEeCCCCC--------CcHHHHHHH---HHcCCcEEEeccccceeeeecCCcccccCC
Q 022677 167 SSTNQAVDTAVRILKE-GGMDAIKLEGGSP--------SRITAARGI---VEAGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (293)
Q Consensus 167 ~s~e~av~~A~rl~ke-aGa~gVkiEgg~~--------~~~~~ikal---~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt 234 (293)
.+.+..-+.+-.++ + .|++||-+-|... +...+++.. ++..+||+.++|
T Consensus 21 iD~~~~~~li~~l~-~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg------------------ 81 (293)
T PRK04147 21 IDEQGLRRLVRFNI-EKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG------------------ 81 (293)
T ss_pred cCHHHHHHHHHHHH-hcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC------------------
Confidence 34554544444444 7 8999999988521 112223322 233477776644
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCC-----C-HHH---HHHHHHhcCCCEEEeC
Q 022677 235 VTSAVKVVETALALQEVGCFSVVLECV-----P-PPV---AAAATSALQIPTIGIG 281 (293)
Q Consensus 235 ~~~a~e~l~rA~a~eeAGA~~IvlE~v-----p-~e~---a~~It~~l~iPtIGIG 281 (293)
....+++++.++.++++|||++++-.. + +++ .+.|.+.+++|++.+-
T Consensus 82 ~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn 137 (293)
T PRK04147 82 SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYN 137 (293)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 114478899999999999999997643 1 233 4557788899999874
No 162
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=94.64 E-value=0.14 Score=48.09 Aligned_cols=96 Identities=30% Similarity=0.404 Sum_probs=66.0
Q ss_pred CCCCCCHHHHHHHHHHHHH-HhCCCEEEeCC---CCCC------cHHHHHHHHHcCCcEEEeccccceeeeecCCccccc
Q 022677 163 GTYESSTNQAVDTAVRILK-EGGMDAIKLEG---GSPS------RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (293)
Q Consensus 163 Gsy~~s~e~av~~A~rl~k-eaGa~gVkiEg---g~~~------~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqG 232 (293)
|.| |.|||+++| |+-+ ..+-+-||||- .... .....+-|++.|..|+-.+
T Consensus 78 Gc~--taeEAv~tA-rlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~----------------- 137 (262)
T COG2022 78 GCR--TAEEAVRTA-RLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYT----------------- 137 (262)
T ss_pred ccC--CHHHHHHHH-HHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeecc-----------------
Confidence 555 899999998 4444 45789999993 3221 2233455677777776431
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEecCCC---------HHHHHHHHHhcCCCEE---EeCCCC
Q 022677 233 KNVTSAVKVVETALALQEVGCFSVVLECVP---------PPVAAAATSALQIPTI---GIGAGP 284 (293)
Q Consensus 233 rt~~~a~e~l~rA~a~eeAGA~~IvlE~vp---------~e~a~~It~~l~iPtI---GIGaG~ 284 (293)
+++ .--|++|+|+||-+|..=+-| .+-++.|.++.++|+| |||.=+
T Consensus 138 -~dD-----~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pS 195 (262)
T COG2022 138 -TDD-----PVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPS 195 (262)
T ss_pred -CCC-----HHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChh
Confidence 111 226899999999999865544 4778999999999999 676644
No 163
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=94.63 E-value=1.2 Score=39.62 Aligned_cols=153 Identities=26% Similarity=0.302 Sum_probs=84.8
Q ss_pred EecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCeEEeeCCCCCCCCCHHHHHHH
Q 022677 97 VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLVGDLPFGTYESSTNQAVDT 175 (293)
Q Consensus 97 ~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~R-a~~~p~vvaDmpfGsy~~s~e~av~~ 175 (293)
.+.=|.+.=+++.+.|+|.+.+---.+...+. .+. .+ . +...+ ..+.| +++-+.- .++++..+.
T Consensus 8 ~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~-~~~-----~~-~---~~~~~~~~~~p-~~~qi~g----~~~~~~~~a 72 (231)
T cd02801 8 VGVTDLPFRLLCRRYGADLVYTEMISAKALLR-GNR-----KR-L---RLLTRNPEERP-LIVQLGG----SDPETLAEA 72 (231)
T ss_pred CCCcCHHHHHHHHHHCCCEEEecCEEEhhhhh-cCH-----HH-H---HhhccCccCCC-EEEEEcC----CCHHHHHHH
Confidence 34455666666667778888764222111111 111 00 0 11111 23344 5555541 357777777
Q ss_pred HHHHHHHhCCCEEEeCCCCC------------------CcHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHH
Q 022677 176 AVRILKEGGMDAIKLEGGSP------------------SRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVT 236 (293)
Q Consensus 176 A~rl~keaGa~gVkiEgg~~------------------~~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~ 236 (293)
|.++. ++|+++|+|-.|.. ...++++++.+. ++|+.--+. .|-+.+
T Consensus 73 a~~~~-~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r--------------~~~~~~ 137 (231)
T cd02801 73 AKIVE-ELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIR--------------LGWDDE 137 (231)
T ss_pred HHHHH-hcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEe--------------eccCCc
Confidence 76655 78999999974431 123555656542 233331111 111111
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecCC--------C--HHHHHHHHHhcCCCEEEeC
Q 022677 237 SAVKVVETALALQEVGCFSVVLECV--------P--PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 237 ~a~e~l~rA~a~eeAGA~~IvlE~v--------p--~e~a~~It~~l~iPtIGIG 281 (293)
+++++-++.++++|++.|.+-+. + -+.++.+.+.+++|+++-|
T Consensus 138 --~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~G 190 (231)
T cd02801 138 --EETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANG 190 (231)
T ss_pred --hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeC
Confidence 57788889999999999954321 2 3667889999999999755
No 164
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=94.60 E-value=0.86 Score=44.28 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=83.9
Q ss_pred HHHHHHHcCCcEEEEC--chhhhhhc--cCCCCccCCHHHHHHHHHHHHcccCCCeEE-eeCCCCCCCCCHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVG--DSAAMVVH--GHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVR 178 (293)
Q Consensus 104 SAriae~AG~DailvG--dSla~~~l--G~~dt~~vtl~eml~h~raV~Ra~~~p~vv-aDmpfGsy~~s~e~av~~A~r 178 (293)
-++.++++|+|.|=+| |.++..++ |++... =.|.+..++.....++ +.+ .+ | | + .+.++. .+
T Consensus 30 i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~---~~e~i~~~~~~~~~~~--~~~ll~-p-g-~-~~~~dl----~~ 96 (337)
T PRK08195 30 IARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT---DEEYIEAAAEVVKQAK--IAALLL-P-G-I-GTVDDL----KM 96 (337)
T ss_pred HHHHHHHcCCCEEEeecCCCCCCccccCCCCCCC---HHHHHHHHHHhCCCCE--EEEEec-c-C-c-ccHHHH----HH
Confidence 4567899999999654 44444333 554433 3455555543333232 222 33 3 2 2 134332 23
Q ss_pred HHHHhCCCEEEeCCCCC---CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcE
Q 022677 179 ILKEGGMDAIKLEGGSP---SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFS 255 (293)
Q Consensus 179 l~keaGa~gVkiEgg~~---~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~ 255 (293)
.. +.|++.|.+-.... ...+.++.+.+.|..+++.+--. .+. +-+++++.++.++++||+.
T Consensus 97 a~-~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a-------------~~~--~~e~l~~~a~~~~~~Ga~~ 160 (337)
T PRK08195 97 AY-DAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS-------------HMA--PPEKLAEQAKLMESYGAQC 160 (337)
T ss_pred HH-HcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec-------------cCC--CHHHHHHHHHHHHhCCCCE
Confidence 33 68999988875432 24467788889999988653211 122 3467888899999999999
Q ss_pred EEec-----CCCH---HHHHHHHHhc
Q 022677 256 VVLE-----CVPP---PVAAAATSAL 273 (293)
Q Consensus 256 IvlE-----~vp~---e~a~~It~~l 273 (293)
|.+- ..|. +..+.+.+++
T Consensus 161 i~i~DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 161 VYVVDSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 9976 2343 4455666666
No 165
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.58 E-value=4.8 Score=39.06 Aligned_cols=167 Identities=16% Similarity=0.195 Sum_probs=94.2
Q ss_pred cEEEEecCC--HHHHHHHHHcCCcEEEECchhhhh-hccCCCC--------------c---cCCHHHHHHHHHHHHcccC
Q 022677 93 PITMVTAYD--YPSAVHLDSAGIDICLVGDSAAMV-VHGHDTT--------------L---PITLEEMLVHCRAVARGAK 152 (293)
Q Consensus 93 pi~m~tayD--~~SAriae~AG~DailvGdSla~~-~lG~~dt--------------~---~vtl~eml~h~raV~Ra~~ 152 (293)
||.+-...| .-..+.++++|+.++.++. +.-- .-|.+.. . ....|.++.+.+... .+
T Consensus 61 Pi~~AsG~~~~~~~~~~~~~~G~Gavv~kt-vt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~--~~ 137 (344)
T PRK05286 61 PVGLAAGFDKNGEAIDALGALGFGFVEVGT-VTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAY--RG 137 (344)
T ss_pred CCEECCCCCCChHHHHHHHHcCCCEEEeCC-cCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhc--CC
Confidence 554333333 3344556778888888774 2221 2333211 0 223677777776643 45
Q ss_pred CCeEEeeCCC---CCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC------------CcHHHHHHHHHc-C-----CcE
Q 022677 153 RPLLVGDLPF---GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP------------SRITAARGIVEA-G-----IAV 211 (293)
Q Consensus 153 ~p~vvaDmpf---Gsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~------------~~~~~ikal~~~-G-----IpV 211 (293)
.| |++.+-- ...+.+.++-.+.+.++- + ++|++-+.=+.. ...++++++.++ + +||
T Consensus 138 ~p-vivsI~~~~~~~~~~~~~d~~~~~~~~~-~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV 214 (344)
T PRK05286 138 IP-LGINIGKNKDTPLEDAVDDYLICLEKLY-P-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPL 214 (344)
T ss_pred Cc-EEEEEecCCCCCcccCHHHHHHHHHHHH-h-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCce
Confidence 66 5555521 122346777766655542 3 588876642211 123455555442 3 677
Q ss_pred EEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC---------------------------HH
Q 022677 212 MGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP---------------------------PP 264 (293)
Q Consensus 212 ~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp---------------------------~e 264 (293)
.-= |.|. -+ .+++.+-|++++++|+|+|.+-.-. -+
T Consensus 215 ~vK--lsp~------------~~---~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~ 277 (344)
T PRK05286 215 LVK--IAPD------------LS---DEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTE 277 (344)
T ss_pred EEE--eCCC------------CC---HHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHH
Confidence 632 2221 12 2357788899999999999986521 13
Q ss_pred HHHHHHHhc--CCCEEEeCC
Q 022677 265 VAAAATSAL--QIPTIGIGA 282 (293)
Q Consensus 265 ~a~~It~~l--~iPtIGIGa 282 (293)
.++.+.+++ ++|+||.|.
T Consensus 278 ~v~~l~~~~~~~ipIig~GG 297 (344)
T PRK05286 278 VIRRLYKELGGRLPIIGVGG 297 (344)
T ss_pred HHHHHHHHhCCCCCEEEECC
Confidence 677888888 799998763
No 166
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=94.56 E-value=0.59 Score=42.84 Aligned_cols=103 Identities=25% Similarity=0.293 Sum_probs=67.8
Q ss_pred HHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEecccc
Q 022677 139 EMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLT 218 (293)
Q Consensus 139 eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLt 218 (293)
+....++.+|+..+.+|++-| + .+-| .+.|||||+|......... .++ .
T Consensus 52 ~~a~~~~~lc~~~~v~liINd-----~---~dlA--------~~~~AdGVHlGq~D~~~~~-ar~-------~------- 100 (211)
T COG0352 52 ALAEKLRALCQKYGVPLIIND-----R---VDLA--------LAVGADGVHLGQDDMPLAE-ARE-------L------- 100 (211)
T ss_pred HHHHHHHHHHHHhCCeEEecC-----c---HHHH--------HhCCCCEEEcCCcccchHH-HHH-------h-------
Confidence 556788999999999988755 2 2333 2689999999654321222 221 1
Q ss_pred ceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec---------CCC---HHHHHHHHHhcCCCEEEeCC
Q 022677 219 PQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE---------CVP---PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 219 Pq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE---------~vp---~e~a~~It~~l~iPtIGIGa 282 (293)
++..+..|.+..+ ++.++..++.|+|-|++= ..| .+..+.+.+..++|++.||+
T Consensus 101 ------~~~~~iIG~S~h~----~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGG 166 (211)
T COG0352 101 ------LGPGLIIGLSTHD----LEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGG 166 (211)
T ss_pred ------cCCCCEEEeecCC----HHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcC
Confidence 2233445554332 556777788899999862 222 37778888888899999996
No 167
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.56 E-value=1.2 Score=41.98 Aligned_cols=88 Identities=25% Similarity=0.217 Sum_probs=52.2
Q ss_pred EEEEecCCH----HHHHHHHHcC-CcEEEECchhhhhhc-cCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCC
Q 022677 94 ITMVTAYDY----PSAVHLDSAG-IDICLVGDSAAMVVH-GHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES 167 (293)
Q Consensus 94 i~m~tayD~----~SAriae~AG-~DailvGdSla~~~l-G~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~ 167 (293)
++-++.+|. -.|+.++++| +|.|=+--|.-.... |+... -..+.+.+.+++|++.++.| |.+-+.. +.
T Consensus 95 i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~--~~~~~~~eiv~~vr~~~~~p-v~vKl~~-~~-- 168 (301)
T PRK07259 95 IANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFG--TDPELAYEVVKAVKEVVKVP-VIVKLTP-NV-- 168 (301)
T ss_pred EEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccc--cCHHHHHHHHHHHHHhcCCC-EEEEcCC-Cc--
Confidence 344555543 3477778888 999933111112222 22211 24567778888888888777 7777763 22
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEe
Q 022677 168 STNQAVDTAVRILKEGGMDAIKL 190 (293)
Q Consensus 168 s~e~av~~A~rl~keaGa~gVki 190 (293)
++..+.+.++ +++|+|+|-+
T Consensus 169 --~~~~~~a~~l-~~~G~d~i~~ 188 (301)
T PRK07259 169 --TDIVEIAKAA-EEAGADGLSL 188 (301)
T ss_pred --hhHHHHHHHH-HHcCCCEEEE
Confidence 4555555554 4799999865
No 168
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.53 E-value=0.82 Score=42.49 Aligned_cols=153 Identities=18% Similarity=0.204 Sum_probs=87.6
Q ss_pred HHHHHHHcCCcEEEECchhhh-hhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~-~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ke 182 (293)
.|+..++.|+|-+.+-|--+. ...| ..+...+.+++.+..|+ .++ |+. .+.+++ .+++ +
T Consensus 35 ~a~~~~~~g~~~l~i~Dl~~~~~~~~----------~n~~~i~~i~~~~~~pv-~~g---GGi-~s~~d~----~~l~-~ 94 (258)
T PRK01033 35 AVRIFNEKEVDELIVLDIDASKRGSE----------PNYELIENLASECFMPL-CYG---GGI-KTLEQA----KKIF-S 94 (258)
T ss_pred HHHHHHHcCCCEEEEEECCCCcCCCc----------ccHHHHHHHHHhCCCCE-EEC---CCC-CCHHHH----HHHH-H
Confidence 367788899999987674322 1111 12444466777677784 444 345 466665 4556 6
Q ss_pred hCCCEEEeCCCCCCcHHHHHHHHHc-C---CcEEEeccccceeeeecCCcccc--cCCHHHHHHHHHHHHHHHHcCCcEE
Q 022677 183 GGMDAIKLEGGSPSRITAARGIVEA-G---IAVMGHVGLTPQAISVLGGFRPQ--GKNVTSAVKVVETALALQEVGCFSV 256 (293)
Q Consensus 183 aGa~gVkiEgg~~~~~~~ikal~~~-G---IpV~GHiGLtPq~~~~lgGf~vq--Grt~~~a~e~l~rA~a~eeAGA~~I 256 (293)
.|++.|-+--.....+..++.+.+. | |.+- |-... ...+.|++. |=.+..-...++-++.+++.|++.+
T Consensus 95 ~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vs----iD~k~-g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~i 169 (258)
T PRK01033 95 LGVEKVSINTAALEDPDLITEAAERFGSQSVVVS----IDVKK-NLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEI 169 (258)
T ss_pred CCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEE----EEEec-CCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEE
Confidence 7999987732221224455555542 1 2111 11110 001112322 1111111245677888899999999
Q ss_pred EecCCC---------HHHHHHHHHhcCCCEEEeC
Q 022677 257 VLECVP---------PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 257 vlE~vp---------~e~a~~It~~l~iPtIGIG 281 (293)
++-.+. -+.++.+++.+++|+|.=|
T Consensus 170 i~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasG 203 (258)
T PRK01033 170 LLNSIDRDGTMKGYDLELLKSFRNALKIPLIALG 203 (258)
T ss_pred EEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeC
Confidence 988665 3888999999999998554
No 169
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.48 E-value=0.32 Score=49.56 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=62.4
Q ss_pred CcEEEE-ecCCHHHHHHHHHcCCcEEEECchhhh--hhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCC
Q 022677 92 EPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAM--VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (293)
Q Consensus 92 ~pi~m~-tayD~~SAriae~AG~DailvGdSla~--~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s 168 (293)
...+|. |+=.+-.|+-+.++|+|+|-||=..|. +..+|-.-+ ++.=..++.|...++..+.| |++| |+. .+
T Consensus 268 ~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~-~p~~~av~~~~~~~~~~~~~-via~---ggi-~~ 341 (479)
T PRK07807 268 GVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVG-RPQFSAVLECAAAARELGAH-VWAD---GGV-RH 341 (479)
T ss_pred CCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCc-hhHHHHHHHHHHHHHhcCCc-EEec---CCC-CC
Confidence 345666 999999999999999999986643332 233433322 24445567777777777777 9999 777 46
Q ss_pred HHHHHHHHHHHHHHhCCCEEEeC
Q 022677 169 TNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 169 ~e~av~~A~rl~keaGa~gVkiE 191 (293)
+.++ .+.+ +.||++|.+-
T Consensus 342 ~~~~----~~al-~~ga~~v~~g 359 (479)
T PRK07807 342 PRDV----ALAL-AAGASNVMIG 359 (479)
T ss_pred HHHH----HHHH-HcCCCeeecc
Confidence 7777 4567 5899999884
No 170
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.41 E-value=0.6 Score=44.57 Aligned_cols=97 Identities=12% Similarity=0.141 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------CcHHHHHHH---HHcCCcEEEeccccceeeeecCCcccccCC
Q 022677 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGSP--------SRITAARGI---VEAGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (293)
Q Consensus 166 ~~s~e~av~~A~rl~keaGa~gVkiEgg~~--------~~~~~ikal---~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt 234 (293)
+.+.+..-+.+-.++ +.|++||-+-|... +...+++.. ++..+||+.|++
T Consensus 25 ~iD~~~l~~lv~~li-~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~------------------ 85 (309)
T cd00952 25 TVDLDETARLVERLI-AAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT------------------ 85 (309)
T ss_pred CcCHHHHHHHHHHHH-HcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec------------------
Confidence 456666666666666 69999999988531 122233322 344488887654
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHHhc-CCCEEEeC
Q 022677 235 VTSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSAL-QIPTIGIG 281 (293)
Q Consensus 235 ~~~a~e~l~rA~a~eeAGA~~IvlE~v----p--~e~---a~~It~~l-~iPtIGIG 281 (293)
.....++++.++..+++|||++.+-.. + +++ .+.|++.. ++|++-+-
T Consensus 86 ~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn 142 (309)
T cd00952 86 TLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYA 142 (309)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEc
Confidence 113468899999999999999987643 2 333 35578888 69999763
No 171
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.39 E-value=3.3 Score=36.51 Aligned_cols=138 Identities=20% Similarity=0.201 Sum_probs=83.7
Q ss_pred CcEEEEecCCHHH----HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCC
Q 022677 92 EPITMVTAYDYPS----AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES 167 (293)
Q Consensus 92 ~pi~m~tayD~~S----Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~ 167 (293)
+.+..+...|... ++.+.++|++++-+..+- . ......+.+++..+...+.+ |+- .
T Consensus 5 ~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~---------~------~~~~~i~~l~~~~~~~~iGa----g~v-~ 64 (190)
T cd00452 5 PLVAVLRGDDAEDALALAEALIEGGIRAIEITLRT---------P------GALEAIRALRKEFPEALIGA----GTV-L 64 (190)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---------h------hHHHHHHHHHHHCCCCEEEE----EeC-C
Confidence 3456666666654 455667899999764221 1 12234566666555332332 233 3
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCccccc-CCHHHHHHHHHHHH
Q 022677 168 STNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG-KNVTSAVKVVETAL 246 (293)
Q Consensus 168 s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqG-rt~~~a~e~l~rA~ 246 (293)
+.+++ -..+ +.|+++|.+-+.. .+++++..+.|++++ .| .|. ++++
T Consensus 65 ~~~~~----~~a~-~~Ga~~i~~p~~~---~~~~~~~~~~~~~~i------------------~gv~t~-------~e~~ 111 (190)
T cd00452 65 TPEQA----DAAI-AAGAQFIVSPGLD---PEVVKAANRAGIPLL------------------PGVATP-------TEIM 111 (190)
T ss_pred CHHHH----HHHH-HcCCCEEEcCCCC---HHHHHHHHHcCCcEE------------------CCcCCH-------HHHH
Confidence 55655 2334 6899999875433 566777777787775 12 243 3444
Q ss_pred HHHHcCCcEEEec-CCC--HHHHHHHHHhcC-CCEEEeCC
Q 022677 247 ALQEVGCFSVVLE-CVP--PPVAAAATSALQ-IPTIGIGA 282 (293)
Q Consensus 247 a~eeAGA~~IvlE-~vp--~e~a~~It~~l~-iPtIGIGa 282 (293)
...++|||.|-+- +-+ .+..+.+.+.++ +|++.+|.
T Consensus 112 ~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a~GG 151 (190)
T cd00452 112 QALELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMPTGG 151 (190)
T ss_pred HHHHCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEEeCC
Confidence 4567999999653 333 577888888774 99999985
No 172
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.38 E-value=0.33 Score=47.16 Aligned_cols=92 Identities=18% Similarity=0.319 Sum_probs=58.0
Q ss_pred HHHHHHhhhCCCcEEEE-ecCCHHHHHHHHHcCCcEEEECchhhhhh-------ccCCCCccCCHHHHHHHHHHHHcccC
Q 022677 81 LTHLRQKHKNGEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVV-------HGHDTTLPITLEEMLVHCRAVARGAK 152 (293)
Q Consensus 81 ~~~Lr~l~~~g~pi~m~-tayD~~SAriae~AG~DailvGdSla~~~-------lG~~dt~~vtl~eml~h~raV~Ra~~ 152 (293)
++.+++.+ +.|+++. ++-++-.|+.+.++|+|.|.||-..+..+ .|+++- .+.....++.+.+
T Consensus 128 i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~-------~l~ai~ev~~a~~ 198 (321)
T TIGR01306 128 IKHIKTHL--PDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGW-------QLAALRWCAKAAR 198 (321)
T ss_pred HHHHHHhC--CCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCch-------HHHHHHHHHHhcC
Confidence 44444433 3464444 48899999999999999999874333322 233321 1334455555555
Q ss_pred CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 153 ~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
.| |++| |+. .+..+++ +.+ ..||++|.+=
T Consensus 199 ~p-VIad---GGI-r~~~Di~----KAL-a~GAd~Vmig 227 (321)
T TIGR01306 199 KP-IIAD---GGI-RTHGDIA----KSI-RFGASMVMIG 227 (321)
T ss_pred Ce-EEEE---CCc-CcHHHHH----HHH-HcCCCEEeec
Confidence 66 9999 555 3445663 556 4799999884
No 173
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.38 E-value=0.32 Score=47.71 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHc--CCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHH
Q 022677 100 YDYPSAVHLDSA--GIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (293)
Q Consensus 100 yD~~SAriae~A--G~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~ 177 (293)
-|+-.+..+-++ |.|+|.+ |+. +||... ++...+.|++..+.++|++ |+- .++|.+ .
T Consensus 107 ~d~er~~~L~~a~~~~d~ivi-D~A----hGhs~~-------~i~~ik~ir~~~p~~~via----GNV-~T~e~a----~ 165 (343)
T TIGR01305 107 NDLEKMTSILEAVPQLKFICL-DVA----NGYSEH-------FVEFVKLVREAFPEHTIMA----GNV-VTGEMV----E 165 (343)
T ss_pred HHHHHHHHHHhcCCCCCEEEE-ECC----CCcHHH-------HHHHHHHHHhhCCCCeEEE----ecc-cCHHHH----H
Confidence 555566655566 5999998 654 676554 3667777877777777775 344 466777 4
Q ss_pred HHHHHhCCCEEEeC
Q 022677 178 RILKEGGMDAIKLE 191 (293)
Q Consensus 178 rl~keaGa~gVkiE 191 (293)
+++ ++|||+||+-
T Consensus 166 ~Li-~aGAD~ikVg 178 (343)
T TIGR01305 166 ELI-LSGADIVKVG 178 (343)
T ss_pred HHH-HcCCCEEEEc
Confidence 567 6999999976
No 174
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=94.38 E-value=0.98 Score=41.78 Aligned_cols=126 Identities=21% Similarity=0.175 Sum_probs=72.3
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC-CCC---CCCCCHHHHHHHHHHHH
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL-PFG---TYESSTNQAVDTAVRIL 180 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm-pfG---sy~~s~e~av~~A~rl~ 180 (293)
++-+-+.|+|.+-+-+..+. ++. -.+-+.+..++.+|+..+.||++ +. +.| ++ .+.++ ++.+.+..
T Consensus 96 v~~al~~Ga~~v~~~~~~g~------~~~-~~~~~~~~~i~~~~~~~g~~liv-~~~~~Gvh~~~-~~~~~-~~~~~~~a 165 (258)
T TIGR01949 96 VEDAIRMGADAVSIHVNVGS------DTE-WEQIRDLGMIAEICDDWGVPLLA-MMYPRGPHIDD-RDPEL-VAHAARLG 165 (258)
T ss_pred HHHHHHCCCCEEEEEEecCC------chH-HHHHHHHHHHHHHHHHcCCCEEE-EEeccCccccc-ccHHH-HHHHHHHH
Confidence 44555789998865444321 111 01112344444555556788766 22 211 12 24443 44434555
Q ss_pred HHhCCCEEEeCCCCCCcHHHHHHHHH-cCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 022677 181 KEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258 (293)
Q Consensus 181 keaGa~gVkiEgg~~~~~~~ikal~~-~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~Ivl 258 (293)
.+.|||-||+.... -.+.++.+++ ..+||+. .| |-+.+..+++++....+.++||+++-+
T Consensus 166 ~~~GADyikt~~~~--~~~~l~~~~~~~~iPVva-----------~G-----Gi~~~~~~~~~~~i~~~~~aGa~Gia~ 226 (258)
T TIGR01949 166 AELGADIVKTPYTG--DIDSFRDVVKGCPAPVVV-----------AG-----GPKTNSDREFLQMIKDAMEAGAAGVAV 226 (258)
T ss_pred HHHCCCEEeccCCC--CHHHHHHHHHhCCCcEEE-----------ec-----CCCCCCHHHHHHHHHHHHHcCCcEEeh
Confidence 57999999997432 2455666765 5788863 23 333334567788888889999998764
No 175
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.37 E-value=0.37 Score=45.02 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCCC--------CcHHHHHHH---HHcCCcEEEeccccceeeeecCCcccccCCHH
Q 022677 168 STNQAVDTAVRILKEGGMDAIKLEGGSP--------SRITAARGI---VEAGIAVMGHVGLTPQAISVLGGFRPQGKNVT 236 (293)
Q Consensus 168 s~e~av~~A~rl~keaGa~gVkiEgg~~--------~~~~~ikal---~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~ 236 (293)
+.+...+++ +.+-+.|++++-+=|... +...+++.. ....+||+.++| ..
T Consensus 20 d~~~~~~~i-~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~------------------~~ 80 (289)
T PF00701_consen 20 DEDALKRLI-DFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG------------------AN 80 (289)
T ss_dssp -HHHHHHHH-HHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE------------------SS
T ss_pred CHHHHHHHH-HHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc------------------ch
Confidence 444444454 444478999999987521 111222222 234577876644 11
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecCC-----C-H---HHHHHHHHhcCCCEEEeC
Q 022677 237 SAVKVVETALALQEVGCFSVVLECV-----P-P---PVAAAATSALQIPTIGIG 281 (293)
Q Consensus 237 ~a~e~l~rA~a~eeAGA~~IvlE~v-----p-~---e~a~~It~~l~iPtIGIG 281 (293)
..+++++.++.++++|||++++-.. + + +-.+.|++..++|++-.-
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEE
Confidence 3578899999999999999986532 2 2 334667788899998543
No 176
>PLN02489 homocysteine S-methyltransferase
Probab=94.36 E-value=2.7 Score=40.78 Aligned_cols=119 Identities=16% Similarity=0.221 Sum_probs=69.2
Q ss_pred CeEEeeCC-CC-----------CCC--CCHHHHHHHH---HHHHHHhCCCEEEeCCCCC--CcHHHHHHHHHcC--CcEE
Q 022677 154 PLLVGDLP-FG-----------TYE--SSTNQAVDTA---VRILKEGGMDAIKLEGGSP--SRITAARGIVEAG--IAVM 212 (293)
Q Consensus 154 p~vvaDmp-fG-----------sy~--~s~e~av~~A---~rl~keaGa~gVkiEgg~~--~~~~~ikal~~~G--IpV~ 212 (293)
.+|.++++ +| .|+ .+.++..+.= ++.+.++|+|.+-+|=-.. +...+++++.+.+ +|++
T Consensus 133 ~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~ 212 (335)
T PLN02489 133 ILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAW 212 (335)
T ss_pred cEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEE
Confidence 56778885 33 343 4556655442 2233379999999996432 2335566666664 6765
Q ss_pred EeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCCH----HHHHHHHHhcCCCEEEeCCC
Q 022677 213 GHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPP----PVAAAATSALQIPTIGIGAG 283 (293)
Q Consensus 213 GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~----e~a~~It~~l~iPtIGIGaG 283 (293)
--+- - ..+|...-|.+.+++.+.++ +..++++|=+=|..+ ++++.+...+++|++..-.+
T Consensus 213 iS~t--~----~~~~~l~~G~~~~~~~~~~~-----~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~vyPNa 276 (335)
T PLN02489 213 ISFN--S----KDGVNVVSGDSLLECASIAD-----SCKKVVAVGINCTPPRFIHGLILSIRKVTSKPIVVYPNS 276 (335)
T ss_pred EEEE--e----CCCCccCCCCcHHHHHHHHH-----hcCCceEEEecCCCHHHHHHHHHHHHhhcCCcEEEECCC
Confidence 3321 1 12333345555444433332 124788888999874 45666667778898876553
No 177
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=94.35 E-value=0.85 Score=47.64 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=91.2
Q ss_pred HHHHHHHcCCcEEEECc-hhhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCeEE-eeC--CCCCCCCCHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLV-GDL--PFGTYESSTNQAVDTAVR 178 (293)
Q Consensus 104 SAriae~AG~DailvGd-Sla~~~lG~~dt~~vtl~eml~h~raV~Ra~~-~p~vv-aDm--pfGsy~~s~e~av~~A~r 178 (293)
-|...+++|++.|=+|. +--.+++.|-+-. +| |.+ +.+++..+ .++.. .-. .. +|..-++++++.-++
T Consensus 26 ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~--~~-e~l---~~l~~~~~~~~l~~L~Rg~N~~-G~~~ypddvv~~~v~ 98 (582)
T TIGR01108 26 IAEKLDDVGYWSLEVWGGATFDACIRFLNED--PW-ERL---RELKKALPNTPLQMLLRGQNLL-GYRHYADDVVERFVK 98 (582)
T ss_pred HHHHHHHcCCCEEEecCCcccccccccCCCC--HH-HHH---HHHHHhCCCCEEEEEEcccccc-ccccCchhhHHHHHH
Confidence 57778999999995542 1111222322222 23 333 44444333 23222 111 12 354446777776666
Q ss_pred HHHHhCCCEEEeCCCCC---CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcE
Q 022677 179 ILKEGGMDAIKLEGGSP---SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFS 255 (293)
Q Consensus 179 l~keaGa~gVkiEgg~~---~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~ 255 (293)
...+.|++.+.+-+... .....++.+.+.|..+.+-+..+- .+ + ...+.+++-+++++++||+.
T Consensus 99 ~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~-----~p------~--~~~~~~~~~~~~~~~~Gad~ 165 (582)
T TIGR01108 99 KAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT-----SP------V--HTLETYLDLAEELLEMGVDS 165 (582)
T ss_pred HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc-----CC------C--CCHHHHHHHHHHHHHcCCCE
Confidence 66689999999987642 234556777889998886543111 00 0 13467788888999999999
Q ss_pred EEecC-----CCH---HHHHHHHHhcCCCE
Q 022677 256 VVLEC-----VPP---PVAAAATSALQIPT 277 (293)
Q Consensus 256 IvlE~-----vp~---e~a~~It~~l~iPt 277 (293)
|.+-= .|. ++.+.|.+++++|+
T Consensus 166 I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi 195 (582)
T TIGR01108 166 ICIKDMAGILTPKAAYELVSALKKRFGLPV 195 (582)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHhCCCce
Confidence 99872 342 56677777777773
No 178
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=94.32 E-value=1.6 Score=43.16 Aligned_cols=132 Identities=27% Similarity=0.307 Sum_probs=77.8
Q ss_pred ccCCCCccCC---HHHHHHHHHHHHccc-CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC--------
Q 022677 127 HGHDTTLPIT---LEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------- 194 (293)
Q Consensus 127 lG~~dt~~vt---l~eml~h~raV~Ra~-~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~-------- 194 (293)
.|+++++.++ +++.+.+.+.+.+.. ..| +++-+ +|+ .++++..+.|.. +++.|+|+|-|-=+.
T Consensus 70 ~g~~n~~~~s~~~~~~~~~~~~~~~~~~~~~p-~i~si-~g~--~~~~~~~~~a~~-~~~~g~d~ielN~scP~~~~~~~ 144 (420)
T PRK08318 70 IGFNNIELITDRPLEVNLREIRRVKRDYPDRA-LIASI-MVE--CNEEEWKEIAPL-VEETGADGIELNFGCPHGMSERG 144 (420)
T ss_pred ccccCcccccccCHHHHHHHHHHHHhhCCCce-EEEEe-ccC--CCHHHHHHHHHH-HHhcCCCEEEEeCCCCCCccccC
Confidence 5777776544 566666666665444 355 55554 232 156766666655 567899998873211
Q ss_pred ---------CCcHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEe------
Q 022677 195 ---------PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL------ 258 (293)
Q Consensus 195 ---------~~~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~Ivl------ 258 (293)
+...++++++.+. .|||.-= |.| +. .++.+-|++++++|||+|.+
T Consensus 145 ~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vK--l~p--------------~~---~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (420)
T PRK08318 145 MGSAVGQVPELVEMYTRWVKRGSRLPVIVK--LTP--------------NI---TDIREPARAAKRGGADAVSLINTINS 205 (420)
T ss_pred CcccccCCHHHHHHHHHHHHhccCCcEEEE--cCC--------------Cc---ccHHHHHHHHHHCCCCEEEEecccCc
Confidence 1123445555443 4666532 222 11 13566788999999999993
Q ss_pred ------c------------------CCC-----HHHHHHHHHhc---CCCEEEeCC
Q 022677 259 ------E------------------CVP-----PPVAAAATSAL---QIPTIGIGA 282 (293)
Q Consensus 259 ------E------------------~vp-----~e~a~~It~~l---~iPtIGIGa 282 (293)
| +.+ -+.++.+.+.+ ++|+||.|.
T Consensus 206 ~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GG 261 (420)
T PRK08318 206 ITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGG 261 (420)
T ss_pred cccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecC
Confidence 1 111 16667888877 799998773
No 179
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.28 E-value=1.9 Score=45.24 Aligned_cols=117 Identities=19% Similarity=0.214 Sum_probs=76.1
Q ss_pred HHHHHHhhhCCCcEEEEe----c---CCHH------HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHH
Q 022677 81 LTHLRQKHKNGEPITMVT----A---YDYP------SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (293)
Q Consensus 81 ~~~Lr~l~~~g~pi~m~t----a---yD~~------SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV 147 (293)
+..||+.. .+.|+.|+. . .-|+ ..+.+-+.|+|++-+.|++ -.++-|..+.+.+
T Consensus 66 l~~~r~~~-pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~l------------nd~~n~~~~i~~~ 132 (596)
T PRK14042 66 LRQLRQAL-PNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDAL------------NDARNLKVAIDAI 132 (596)
T ss_pred HHHHHHhC-CCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccC------------cchHHHHHHHHHH
Confidence 44455543 456777766 2 2223 5677778899999999987 2456677788888
Q ss_pred HcccCCCeEE--eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHHc-CCcEEEe
Q 022677 148 ARGAKRPLLV--GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (293)
Q Consensus 148 ~Ra~~~p~vv--aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~~-GIpV~GH 214 (293)
++.-... .. +-+- |+--+++..++.+.++. +.|++.|.|-|-.. .+..++++|.++ ++|+--|
T Consensus 133 k~~G~~~-~~~i~yt~--sp~~t~e~~~~~ak~l~-~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H 203 (596)
T PRK14042 133 KSHKKHA-QGAICYTT--SPVHTLDNFLELGKKLA-EMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLH 203 (596)
T ss_pred HHcCCEE-EEEEEecC--CCCCCHHHHHHHHHHHH-HcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEE
Confidence 7643211 11 1232 44457888888887766 79999999999532 233556666543 6887776
No 180
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.26 E-value=0.94 Score=46.47 Aligned_cols=69 Identities=22% Similarity=0.404 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCeEEeeCCCCCCCCCHHHHHHHHHH
Q 022677 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVR 178 (293)
Q Consensus 100 yD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~-~p~vvaDmpfGsy~~s~e~av~~A~r 178 (293)
.|.--+..+-++|+|+|.+ |+. +|+. . .++...+.|++..+ .+++.+|.- +.+++ .+
T Consensus 248 ~~~~r~~~l~~ag~d~i~i-D~~----~g~~------~-~~~~~i~~ik~~~p~~~vi~g~v~------t~e~a----~~ 305 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVL-DSS----QGDS------I-YQLEMIKYIKKTYPELDVIGGNVV------TMYQA----QN 305 (505)
T ss_pred cHHHHHHHHHHcCCCEEEE-eCC----CCCc------H-HHHHHHHHHHHhCCCCcEEEecCC------CHHHH----HH
Confidence 5567788888999999998 652 3332 2 22444566666555 443345653 45776 45
Q ss_pred HHHHhCCCEEEeC
Q 022677 179 ILKEGGMDAIKLE 191 (293)
Q Consensus 179 l~keaGa~gVkiE 191 (293)
++ ++|||+|++-
T Consensus 306 a~-~aGaD~i~vg 317 (505)
T PLN02274 306 LI-QAGVDGLRVG 317 (505)
T ss_pred HH-HcCcCEEEEC
Confidence 66 6999999984
No 181
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.24 E-value=0.66 Score=43.13 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------CcHHHHHHHH---HcCCcEEEeccccceeeeecCCcccccCC
Q 022677 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGSP--------SRITAARGIV---EAGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (293)
Q Consensus 166 ~~s~e~av~~A~rl~keaGa~gVkiEgg~~--------~~~~~ikal~---~~GIpV~GHiGLtPq~~~~lgGf~vqGrt 234 (293)
+.+.+...+.+..++ +.|++++-+-|... +...+++... ...+|++.+++
T Consensus 17 ~iD~~~~~~~i~~l~-~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~------------------ 77 (284)
T cd00950 17 SVDFDALERLIEFQI-ENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG------------------ 77 (284)
T ss_pred CcCHHHHHHHHHHHH-HcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC------------------
Confidence 345665655555555 78999999887531 1122333332 22466665543
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCC-----C-HHH---HHHHHHhcCCCEEEe
Q 022677 235 VTSAVKVVETALALQEVGCFSVVLECV-----P-PPV---AAAATSALQIPTIGI 280 (293)
Q Consensus 235 ~~~a~e~l~rA~a~eeAGA~~IvlE~v-----p-~e~---a~~It~~l~iPtIGI 280 (293)
....++.++.|+..+++|||++++--. + +++ .+.|++..++|++-.
T Consensus 78 ~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lY 132 (284)
T cd00950 78 SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILY 132 (284)
T ss_pred CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 123468899999999999999887633 1 233 345778888999955
No 182
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.23 E-value=3.1 Score=39.35 Aligned_cols=80 Identities=24% Similarity=0.249 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCcEEEECchhhhh--hccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDSAAMV--VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (293)
Q Consensus 103 ~SAriae~AG~DailvGdSla~~--~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ 180 (293)
-.|+.++++|+|+|=+-=|.-+. .-|+-....-..+.+..-+++|++.++.| |.+=|.- .+ ++..+.+.. +
T Consensus 117 ~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~P-v~vKl~~-~~----~~~~~~a~~-~ 189 (299)
T cd02940 117 ELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIP-VIAKLTP-NI----TDIREIARA-A 189 (299)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCC-eEEECCC-Cc----hhHHHHHHH-H
Confidence 45677788899998432122111 11111111123456677788888888888 5555553 23 233333334 4
Q ss_pred HHhCCCEEE
Q 022677 181 KEGGMDAIK 189 (293)
Q Consensus 181 keaGa~gVk 189 (293)
+++|+++|-
T Consensus 190 ~~~Gadgi~ 198 (299)
T cd02940 190 KEGGADGVS 198 (299)
T ss_pred HHcCCCEEE
Confidence 579999996
No 183
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=94.20 E-value=3.2 Score=38.87 Aligned_cols=148 Identities=16% Similarity=0.080 Sum_probs=83.0
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE-eeCCCCCCCCCHHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv-aDmpfGsy~~s~e~av~~A~rl~ke 182 (293)
-|+.++++|+|.|=+|.-.+....++..+...+.+.+.. +....+ .+.++.+ ++.. .+ +.+ .+ +...+
T Consensus 25 ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~-~~~~~~~~~~~~--~~--~~~-~l----~~a~~ 93 (266)
T cd07944 25 IYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRR-LLGDSK-GNTKIAVMVDYG--ND--DID-LL----EPASG 93 (266)
T ss_pred HHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHH-HHhhhc-cCCEEEEEECCC--CC--CHH-HH----HHHhc
Confidence 467789999999988743322222223333334443332 222221 1233222 3322 22 223 32 33447
Q ss_pred hCCCEEEeCCCCCC---cHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 022677 183 GGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (293)
Q Consensus 183 aGa~gVkiEgg~~~---~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE 259 (293)
.|++.|.+-..... ..+.++.+.+.|+.|+..+- .. | +. ..+.+++-++.+.++|++.|.+-
T Consensus 94 ~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~----~a-----~----~~--~~~~~~~~~~~~~~~g~~~i~l~ 158 (266)
T cd07944 94 SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLM----AI-----S----GY--SDEELLELLELVNEIKPDVFYIV 158 (266)
T ss_pred CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEE----ee-----c----CC--CHHHHHHHHHHHHhCCCCEEEEe
Confidence 89999998765432 34567777889998885522 11 1 11 34567778888889999999987
Q ss_pred -----CCCH---HHHHHHHHhcC--CCE
Q 022677 260 -----CVPP---PVAAAATSALQ--IPT 277 (293)
Q Consensus 260 -----~vp~---e~a~~It~~l~--iPt 277 (293)
..|. ++.+.+.+.++ +|+
T Consensus 159 DT~G~~~P~~v~~lv~~l~~~~~~~~~i 186 (266)
T cd07944 159 DSFGSMYPEDIKRIISLLRSNLDKDIKL 186 (266)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCceE
Confidence 2343 45555656665 553
No 184
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=94.18 E-value=5.9 Score=38.45 Aligned_cols=185 Identities=10% Similarity=0.097 Sum_probs=113.2
Q ss_pred CHHHH-HHhhhCCCcEEEEecCCHHHHH----HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC-C
Q 022677 80 TLTHL-RQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-R 153 (293)
Q Consensus 80 t~~~L-r~l~~~g~pi~m~tayD~~SAr----iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~-~ 153 (293)
|++++ +..++++--+-..|+||..+++ .||+.+.++|+--+....- ...++.+...++..++-++ .
T Consensus 4 ~~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~--------~~g~~~~~~~~~~~a~~~~~V 75 (307)
T PRK05835 4 KGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIK--------YMGIDMAVGMVKIMCERYPHI 75 (307)
T ss_pred CHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHh--------hCChHHHHHHHHHHHHhcCCC
Confidence 34443 4455666678899999999886 4677899999843222221 2345667777777777775 6
Q ss_pred CeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeeecC
Q 022677 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISVLG 226 (293)
Q Consensus 154 p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lg 226 (293)
| |+.-+.-| .+.|.. .+.+ ++|.++|.+-|... ....+++..-..|+.|=|=+|-++-.+.
T Consensus 76 P-ValHLDHg---~~~e~i----~~ai-~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed--- 143 (307)
T PRK05835 76 P-VALHLDHG---TTFESC----EKAV-KAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIED--- 143 (307)
T ss_pred e-EEEECCCC---CCHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccC---
Confidence 7 77777764 244544 3556 58999999976531 2335566667899999888885543221
Q ss_pred CcccccCCHHHHHHHHHHHHHHH-HcCCcEEEec-----------CCC---HHHHHHHHHhcCCCEEEeCCCCCCC
Q 022677 227 GFRPQGKNVTSAVKVVETALALQ-EVGCFSVVLE-----------CVP---PPVAAAATSALQIPTIGIGAGPFCS 287 (293)
Q Consensus 227 Gf~vqGrt~~~a~e~l~rA~a~e-eAGA~~IvlE-----------~vp---~e~a~~It~~l~iPtIGIGaG~~~d 287 (293)
+...... +..-.--+.|+.+. +-|+|+|=+= .-| -+..+.|.+.+++|+ .+-+|++..
T Consensus 144 ~~~~~~~--~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPL-VLHGgSGip 216 (307)
T PRK05835 144 NISVDEK--DAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPL-VLHGASAIP 216 (307)
T ss_pred Ccccccc--cccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCE-EEeCCCCCc
Confidence 1111110 00000012334443 3599986432 223 388899999999997 566666653
No 185
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=94.16 E-value=1.1 Score=42.19 Aligned_cols=157 Identities=19% Similarity=0.232 Sum_probs=92.6
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
-|+..|++|+|++++-.-.-.= =+++-.+.|..-|-..++.|.|-+..| +-.++=. .+...+ ..+-...
T Consensus 39 dA~~leegG~DavivEN~gD~P--f~k~v~~~tvaaMa~iv~~v~r~v~iP-vGvNVLr----Nd~vaA----~~IA~a~ 107 (263)
T COG0434 39 DAAALEEGGVDAVIVENYGDAP--FLKDVGPETVAAMAVIVREVVREVSIP-VGVNVLR----NDAVAA----LAIAYAV 107 (263)
T ss_pred HHHHHHhCCCcEEEEeccCCCC--CCCCCChHHHHHHHHHHHHHHHhcccc-ceeeeec----cccHHH----HHHHHhc
Confidence 4677899999999874111000 034667788889999999999999888 4444332 122333 2333468
Q ss_pred CCCEEEeC--------------CCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHH
Q 022677 184 GMDAIKLE--------------GGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (293)
Q Consensus 184 Ga~gVkiE--------------gg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~e 249 (293)
||+-|..+ |...+.....+.|. .+|++..-+- +.+...+ .-++- ++++++ .++
T Consensus 108 gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~-~~v~vlADv~--VKHa~~l-----~~~~~---~~~v~d--tve 174 (263)
T COG0434 108 GADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG-SRVKVLADVH--VKHAVHL-----GNRSL---EEAVKD--TVE 174 (263)
T ss_pred CCCEEEEEeeeceEecccceecchHHHHHHHHHhcc-CCcEEEeecc--hhccccc-----CCcCH---HHHHHH--HHH
Confidence 99988743 22212222222233 5677765432 2221112 11232 233332 255
Q ss_pred HcCCcEEEecCC-----C-HHHHHHHHHhcCCCEEEeCCCCC
Q 022677 250 EVGCFSVVLECV-----P-PPVAAAATSALQIPTIGIGAGPF 285 (293)
Q Consensus 250 eAGA~~IvlE~v-----p-~e~a~~It~~l~iPtIGIGaG~~ 285 (293)
..+||++.+-+- | .+.++.+.+..+.|++ +|+|-.
T Consensus 175 r~~aDaVI~tG~~TG~~~d~~el~~a~~~~~~pvl-vGSGv~ 215 (263)
T COG0434 175 RGLADAVIVTGSRTGSPPDLEELKLAKEAVDTPVL-VGSGVN 215 (263)
T ss_pred ccCCCEEEEecccCCCCCCHHHHHHHHhccCCCEE-EecCCC
Confidence 678899999863 2 4788999999999999 666643
No 186
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.11 E-value=4.5 Score=37.93 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=61.6
Q ss_pred CCHHHHHHhhhC-CCcE-EEEecCCH----HHHHHHHHcC--CcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcc
Q 022677 79 VTLTHLRQKHKN-GEPI-TMVTAYDY----PSAVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG 150 (293)
Q Consensus 79 ~t~~~Lr~l~~~-g~pi-~m~tayD~----~SAriae~AG--~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra 150 (293)
..++.++...+. +.|+ +-+...|. -.|+.+++++ +|.+-+--+.-.. -|+.+...-..+.+.+.+++|++.
T Consensus 77 ~~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~-~~~g~~l~~~~~~~~eiv~~vr~~ 155 (300)
T TIGR01037 77 AFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV-KGGGIAIGQDPELSADVVKAVKDK 155 (300)
T ss_pred HHHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCC-CCCccccccCHHHHHHHHHHHHHh
Confidence 345555543322 3343 44455552 3466677663 8988542222121 234443344667778888889888
Q ss_pred cCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 151 AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 151 ~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
++.| |.+-+.- +.++..+.+.+ ++++|+|+|.+-
T Consensus 156 ~~~p-v~vKi~~-----~~~~~~~~a~~-l~~~G~d~i~v~ 189 (300)
T TIGR01037 156 TDVP-VFAKLSP-----NVTDITEIAKA-AEEAGADGLTLI 189 (300)
T ss_pred cCCC-EEEECCC-----ChhhHHHHHHH-HHHcCCCEEEEE
Confidence 8777 7788762 23456666555 457999999874
No 187
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=94.02 E-value=2.7 Score=41.36 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=74.5
Q ss_pred HcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 022677 110 SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (293)
Q Consensus 110 ~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVk 189 (293)
++|++++..- ..+...-.+.++....+.+|+..+.+|++-|- ++ +..+.|++||+
T Consensus 168 ~~Gv~~VQLR---------~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND~--------vd--------lAl~~~aDGVH 222 (347)
T PRK02615 168 KGGVTLVQYR---------DKTADDRQRLEEAKKLKELCHRYGALFIVNDR--------VD--------IALAVDADGVH 222 (347)
T ss_pred HcCCCEEEEC---------CCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCh--------HH--------HHHHcCCCEEE
Confidence 4577776543 33333345566677788888888888777761 22 22357999999
Q ss_pred eCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec----------
Q 022677 190 LEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE---------- 259 (293)
Q Consensus 190 iEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE---------- 259 (293)
+. +........+ + .. |-.++.|.+... ++.++...+.|||.|++=
T Consensus 223 Lg-q~dl~~~~aR---~----ll-------------g~~~iIG~S~Hs----~~e~~~A~~~GaDYI~lGPvf~T~tKp~ 277 (347)
T PRK02615 223 LG-QEDLPLAVAR---Q----LL-------------GPEKIIGRSTTN----PEEMAKAIAEGADYIGVGPVFPTPTKPG 277 (347)
T ss_pred eC-hhhcCHHHHH---H----hc-------------CCCCEEEEecCC----HHHHHHHHHcCCCEEEECCCcCCCCCCC
Confidence 94 3321112111 1 11 112334554333 234455567899999862
Q ss_pred --CCCHHHHHHHHHhcCCCEEEeCC
Q 022677 260 --CVPPPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 260 --~vp~e~a~~It~~l~iPtIGIGa 282 (293)
.+..+..+.+.+..++|++.||+
T Consensus 278 ~~~~Gle~l~~~~~~~~iPv~AiGG 302 (347)
T PRK02615 278 KAPAGLEYLKYAAKEAPIPWFAIGG 302 (347)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEECC
Confidence 11247789999999999999985
No 188
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=94.01 E-value=0.75 Score=41.83 Aligned_cols=143 Identities=17% Similarity=0.137 Sum_probs=86.2
Q ss_pred HHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCeEEeeCCCCCCCCCHHHH-----HHHHHHHHH
Q 022677 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQA-----VDTAVRILK 181 (293)
Q Consensus 108 ae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~-~p~vvaDmpfGsy~~s~e~a-----v~~A~rl~k 181 (293)
+-+.|++.+++-=. ++.+++....+.+ ..-++.++|+|++. .+.- +.++.+.+
T Consensus 28 a~~~~~~av~v~p~------------------~~~~~~~~~~~~~~~~~~vi~fp~g~~~--~~~k~~~~~~~~ve~A~- 86 (236)
T PF01791_consen 28 AIEYGFDAVCVTPG------------------YVKPAAELLAGSGVKVGLVIGFPFGTST--TEPKGYDQIVAEVEEAI- 86 (236)
T ss_dssp HHHHTSSEEEEEGG------------------GHHHHHHHSTTSTSEEEEEESTTTSSST--HHHHTCEEEHHHHHHHH-
T ss_pred HHHhCCCEEEECHH------------------HHHHHHHHhhccccccceEEEeCCCCCc--cccccccchHHHHHHHH-
Confidence 44569999987311 1444444444421 23477999998773 3444 56666766
Q ss_pred HhCCCEEEeCCC-------C-----CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHH
Q 022677 182 EGGMDAIKLEGG-------S-----PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (293)
Q Consensus 182 eaGa~gVkiEgg-------~-----~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~e 249 (293)
+.||++|++=-. . +.+..+++...+.|+|++-..-+++ ..+.++. +.+.+..-++...
T Consensus 87 ~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~--------~~~~~~~--~~~~I~~a~ria~ 156 (236)
T PF01791_consen 87 RLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRG--------EEVADEK--KPDLIARAARIAA 156 (236)
T ss_dssp HTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECH--------HHBSSTT--HHHHHHHHHHHHH
T ss_pred HcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCc--------hhhcccc--cHHHHHHHHHHHH
Confidence 689999987521 1 1123444444577999987611111 1111222 4456777788889
Q ss_pred HcCCcEEEecCC-------C-HHHHHHHHHhcCCC----EEEeC
Q 022677 250 EVGCFSVVLECV-------P-PPVAAAATSALQIP----TIGIG 281 (293)
Q Consensus 250 eAGA~~IvlE~v-------p-~e~a~~It~~l~iP----tIGIG 281 (293)
++|||.|=.+-. . .+.++.+++..++| +..=|
T Consensus 157 e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sG 200 (236)
T PF01791_consen 157 ELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASG 200 (236)
T ss_dssp HTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEES
T ss_pred HhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeC
Confidence 999999998876 3 47888888888999 66444
No 189
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=94.00 E-value=0.12 Score=48.13 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=43.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHHhcCCCEEEe
Q 022677 231 QGKNVTSAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGI 280 (293)
Q Consensus 231 qGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp-~e~a~~It~~l~iPtIGI 280 (293)
.|+-++.++.+++.|+.|+++||+.|++.|=+ +.++..|-+.+++|++.|
T Consensus 54 ~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhI 104 (230)
T COG1794 54 AGEWDEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHI 104 (230)
T ss_pred cCccccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehH
Confidence 45556667889999999999999999999976 799999999999999976
No 190
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=93.99 E-value=2 Score=41.28 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=64.5
Q ss_pred HHHHHHHcCCcEEE--ECchhhh-hhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICL--VGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (293)
Q Consensus 104 SAriae~AG~Dail--vGdSla~-~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ 180 (293)
.|+++++.|+|.|= .|=.... +..|.-+...-..+.+...+++|+.+++.| |.+=+-- ++..+.++.++.+.++
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~p-v~vKiR~-G~~~~~~~~~~~a~~l- 158 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVP-VTLKIRT-GWAPEHRNCVEIAQLA- 158 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCc-eEEEEEc-cccCCcchHHHHHHHH-
Confidence 46777788999994 4422221 233333333344566777788888888777 4433332 2433445666666554
Q ss_pred HHhCCCEEEeCCCCC-------CcHHHHHHHHH-cCCcEEEe
Q 022677 181 KEGGMDAIKLEGGSP-------SRITAARGIVE-AGIAVMGH 214 (293)
Q Consensus 181 keaGa~gVkiEgg~~-------~~~~~ikal~~-~GIpV~GH 214 (293)
++.|++.|-+.+... -..+.++.+.+ .+|||.|.
T Consensus 159 e~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~n 200 (321)
T PRK10415 159 EDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIAN 200 (321)
T ss_pred HHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEe
Confidence 579999998876420 12345555554 57999875
No 191
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=93.96 E-value=0.1 Score=48.70 Aligned_cols=78 Identities=26% Similarity=0.266 Sum_probs=60.0
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCC-CCCCCCCHHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP-FGTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmp-fGsy~~s~e~av~~A~rl~ke 182 (293)
-|+.++++|+|.+++. -|-....+-++++.|.+.|+.+++.|+++=|.| ..++..|++.. .++.+-
T Consensus 88 ~a~~a~~~Gad~v~v~---------~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l----~~L~~~ 154 (289)
T PF00701_consen 88 LARHAQDAGADAVLVI---------PPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETL----ARLAKI 154 (289)
T ss_dssp HHHHHHHTT-SEEEEE---------ESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHH----HHHHTS
T ss_pred HHHHHhhcCceEEEEe---------ccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHH----HHHhcC
Confidence 4788899999999874 234456789999999999999999999999999 44565667655 456655
Q ss_pred hCCCEEEeCCCC
Q 022677 183 GGMDAIKLEGGS 194 (293)
Q Consensus 183 aGa~gVkiEgg~ 194 (293)
-.+.|+|-..+.
T Consensus 155 ~nv~giK~s~~~ 166 (289)
T PF00701_consen 155 PNVVGIKDSSGD 166 (289)
T ss_dssp TTEEEEEESSSB
T ss_pred CcEEEEEcCchh
Confidence 579999987764
No 192
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.96 E-value=2.8 Score=43.22 Aligned_cols=119 Identities=20% Similarity=0.244 Sum_probs=77.9
Q ss_pred HHHHHHhhhCCCcEEEEe---------cCC----HHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHH
Q 022677 81 LTHLRQKHKNGEPITMVT---------AYD----YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (293)
Q Consensus 81 ~~~Lr~l~~~g~pi~m~t---------ayD----~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV 147 (293)
++.|++.. .+.+|.|+. .|. -..-+.+-++|+|++-+.|++.=. +-|....++|
T Consensus 67 lr~lr~~~-~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv------------~nl~~ai~~v 133 (499)
T PRK12330 67 LRTFRKLM-PNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP------------RNLEHAMKAV 133 (499)
T ss_pred HHHHHHhC-CCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChH------------HHHHHHHHHH
Confidence 44566554 456777776 122 224556667899999998887432 6667777777
Q ss_pred HcccCCCeEEeeCCC-CCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHHc---CCcEEEec
Q 022677 148 ARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA---GIAVMGHV 215 (293)
Q Consensus 148 ~Ra~~~p~vvaDmpf-Gsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~~---GIpV~GHi 215 (293)
.++-... .+.+-| +|..-+++..++.|.++. +.||+.|.|-|-.. .+..++++|.++ ++|+--|.
T Consensus 134 k~ag~~~--~~~i~yt~sp~~t~e~~~~~a~~l~-~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~ 207 (499)
T PRK12330 134 KKVGKHA--QGTICYTVSPIHTVEGFVEQAKRLL-DMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHC 207 (499)
T ss_pred HHhCCeE--EEEEEEecCCCCCHHHHHHHHHHHH-HcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 7654322 122211 134458999999888876 79999999999532 244667777765 58888774
No 193
>PRK10200 putative racemase; Provisional
Probab=93.93 E-value=0.13 Score=47.14 Aligned_cols=50 Identities=30% Similarity=0.313 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHHhcCCCEEEeC
Q 022677 232 GKNVTSAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 232 Grt~~~a~e~l~rA~a~eeAGA~~IvlE~vp-~e~a~~It~~l~iPtIGIG 281 (293)
+..+.-...+++.++.|+++||+.|++.|-+ +-....+.+++++|+++|-
T Consensus 55 ~~~~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iPii~ii 105 (230)
T PRK10200 55 GEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIA 105 (230)
T ss_pred CCcchHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCCEeehH
Confidence 3444456789999999999999999999988 5678899999999999863
No 194
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=93.91 E-value=3.4 Score=35.10 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=70.1
Q ss_pred HHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCE
Q 022677 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDA 187 (293)
Q Consensus 108 ae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~g 187 (293)
+.++|++.+.+-+ .|.....+.+.+..++..+...+.++++-| + .++..+.|+++
T Consensus 21 l~~~g~~~i~lr~---------~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~-----~-----------~~~a~~~g~~~ 75 (196)
T cd00564 21 ALKGGVTLVQLRE---------KDLSARELLELARALRELCRKYGVPLIIND-----R-----------VDLALAVGADG 75 (196)
T ss_pred HHhcCCCEEEEeC---------CCCCHHHHHHHHHHHHHHHHHhCCeEEEeC-----h-----------HHHHHHcCCCE
Confidence 4456888886532 122222333344445555554556655432 1 12334689999
Q ss_pred EEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC------
Q 022677 188 IKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV------ 261 (293)
Q Consensus 188 VkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v------ 261 (293)
++++.... ....++.+...+..+- + -..|. ++++.+.++|+|.|++-.+
T Consensus 76 vh~~~~~~-~~~~~~~~~~~~~~~g----~-------------~~~t~-------~~~~~~~~~g~d~i~~~~~~~~~~~ 130 (196)
T cd00564 76 VHLGQDDL-PVAEARALLGPDLIIG----V-------------STHSL-------EEALRAEELGADYVGFGPVFPTPTK 130 (196)
T ss_pred EecCcccC-CHHHHHHHcCCCCEEE----e-------------eCCCH-------HHHHHHhhcCCCEEEECCccCCCCC
Confidence 99997542 2222333332222221 0 01232 4566777899999987422
Q ss_pred -----C--HHHHHHHHHhcCCCEEEeCCC
Q 022677 262 -----P--PPVAAAATSALQIPTIGIGAG 283 (293)
Q Consensus 262 -----p--~e~a~~It~~l~iPtIGIGaG 283 (293)
| .+.++.+.+..++|++..|+=
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~pv~a~GGi 159 (196)
T cd00564 131 PGAGPPLGLELLREIAELVEIPVVAIGGI 159 (196)
T ss_pred CCCCCCCCHHHHHHHHHhCCCCEEEECCC
Confidence 2 377788888889999988843
No 195
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.90 E-value=2.9 Score=39.49 Aligned_cols=101 Identities=22% Similarity=0.233 Sum_probs=62.7
Q ss_pred CCcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEE-CchhhhhhccC-------CCCcc------CC----H
Q 022677 76 NQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGH-------DTTLP------IT----L 137 (293)
Q Consensus 76 ~~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dailv-GdSla~~~lG~-------~dt~~------vt----l 137 (293)
.+..|..++.+..+.= .-.|+.+.++|||.|=+ + .+|| |.++. =+ +
T Consensus 128 ~~~mt~~ei~~~i~~~----------~~aA~~a~~aGfDgveih~------~~gyL~~qFlsp~~n~R~d~yGgs~enr~ 191 (327)
T cd02803 128 PREMTKEEIEQIIEDF----------AAAARRAKEAGFDGVEIHG------AHGYLLSQFLSPYTNKRTDEYGGSLENRA 191 (327)
T ss_pred CCcCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEcc------hhhhHHHHhcCccccCCCcccCCCHHHHH
Confidence 4678888888876531 13788899999999943 2 1232 11111 12 2
Q ss_pred HHHHHHHHHHHcccCCC-eEEeeCCCCCC---CCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 022677 138 EEMLVHCRAVARGAKRP-LLVGDLPFGTY---ESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (293)
Q Consensus 138 ~eml~h~raV~Ra~~~p-~vvaDmpfGsy---~~s~e~av~~A~rl~keaGa~gVkiEgg 193 (293)
..+++.+++|++.++.- .|.+++.-..+ +.+.+++++.+.++. +.|++.|.+-++
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~-~~G~d~i~vs~g 250 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALE-EAGVDALHVSGG 250 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHH-HcCCCEEEeCCC
Confidence 33467778888877432 25566653221 136788888876665 789999987654
No 196
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=93.90 E-value=0.45 Score=44.69 Aligned_cols=93 Identities=23% Similarity=0.233 Sum_probs=59.6
Q ss_pred CCHHHHHHhhhCCCcEEEE-ecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 79 VTLTHLRQKHKNGEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 79 ~t~~~Lr~l~~~g~pi~m~-tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
-|++.=+.|.++| ..++| +.-|...|+-++++||.++.--.|-..+-+|..+. +..+.|+...+.| |+
T Consensus 111 etl~Aae~Lv~eG-F~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~---------~~l~~i~~~~~vP-vI 179 (247)
T PF05690_consen 111 ETLKAAEILVKEG-FVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNP---------YNLRIIIERADVP-VI 179 (247)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SSTH---------HHHHHHHHHGSSS-BE
T ss_pred HHHHHHHHHHHCC-CEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCCCH---------HHHHHHHHhcCCc-EE
Confidence 3555556677766 45666 55788999999999999998555655566776664 4456666666888 88
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 158 aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
+|-+.| ++.++. ..| |.|+|+|-+-
T Consensus 180 vDAGiG----~pSdaa----~AM-ElG~daVLvN 204 (247)
T PF05690_consen 180 VDAGIG----TPSDAA----QAM-ELGADAVLVN 204 (247)
T ss_dssp EES-------SHHHHH----HHH-HTT-SEEEES
T ss_pred EeCCCC----CHHHHH----HHH-HcCCceeehh
Confidence 897765 456773 467 7999999886
No 197
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.88 E-value=0.62 Score=45.97 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=58.3
Q ss_pred HHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccC-CCCccCCHHHHHHHHHHHHcc-------cCC
Q 022677 83 HLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGH-DTTLPITLEEMLVHCRAVARG-------AKR 153 (293)
Q Consensus 83 ~Lr~l~~-~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~-~dt~~vtl~eml~h~raV~Ra-------~~~ 153 (293)
++.+..+ .+-|++.=++.++-.|+-+.++|+|+|.+|-.-+..+-+- ..+..++.-..+..+...++. .+.
T Consensus 178 ~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~v 257 (368)
T PRK08649 178 NLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYV 257 (368)
T ss_pred HHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCC
Confidence 3444333 3456544489999999988899999999985443321111 011124433344444443321 135
Q ss_pred CeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 154 p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
| |++| |++ .+..+.+ +.+ ..||++|.+=
T Consensus 258 p-VIAd---GGI-~~~~dia----kAl-alGAd~Vm~G 285 (368)
T PRK08649 258 H-VIAD---GGI-GTSGDIA----KAI-ACGADAVMLG 285 (368)
T ss_pred e-EEEe---CCC-CCHHHHH----HHH-HcCCCeeccc
Confidence 6 9999 667 4566663 456 5899999883
No 198
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.87 E-value=0.37 Score=45.22 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=61.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccc
Q 022677 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP--------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ 231 (293)
Q Consensus 160 mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~--------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vq 231 (293)
+||-....+.+..-+.+-+++ +.|++||-+=|... +...+++..++..-+++.|+|
T Consensus 10 TPf~~g~iD~~~~~~li~~l~-~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg--------------- 73 (279)
T cd00953 10 TPFTGNKIDKEKFKKHCENLI-SKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVG--------------- 73 (279)
T ss_pred cCcCCCCcCHHHHHHHHHHHH-HcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeC---------------
Confidence 555443456666666665555 79999999988531 122334433332223443332
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEe--cC--C-C-H-HHH---HHHHHhcCCCEEEeC
Q 022677 232 GKNVTSAVKVVETALALQEVGCFSVVL--EC--V-P-P-PVA---AAATSALQIPTIGIG 281 (293)
Q Consensus 232 Grt~~~a~e~l~rA~a~eeAGA~~Ivl--E~--v-p-~-e~a---~~It~~l~iPtIGIG 281 (293)
. ....++++.|+..+++|||++++ +- . + + ++. +.|.+ ++|++-.-
T Consensus 74 -~--~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn 128 (279)
T cd00953 74 -S--LNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYN 128 (279)
T ss_pred -c--CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEe
Confidence 1 13478899999999999999997 32 2 2 2 343 34556 89998663
No 199
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=93.82 E-value=2.4 Score=40.47 Aligned_cols=159 Identities=20% Similarity=0.288 Sum_probs=86.3
Q ss_pred HcCCcEEEECchhhhh-----hccCCCCccCCHHHHHHHHHHHHc----ccC--CCeEEeeCC-CCC-----------CC
Q 022677 110 SAGIDICLVGDSAAMV-----VHGHDTTLPITLEEMLVHCRAVAR----GAK--RPLLVGDLP-FGT-----------YE 166 (293)
Q Consensus 110 ~AG~DailvGdSla~~-----~lG~~dt~~vtl~eml~h~raV~R----a~~--~p~vvaDmp-fGs-----------y~ 166 (293)
+||+|+|.+ .+.++. .+|++.- .++++...+-.++| ... ..+|.++++ +|. |.
T Consensus 57 ~AGadiI~T-nTy~a~~~~l~~~g~~~~---~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~~~~y~g~~~ 132 (304)
T PRK09485 57 RAGADCAIT-ASYQATFQGFAARGLSEA---EAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLADGSEYRGDYG 132 (304)
T ss_pred HhCCCEEEe-eccccCHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCCCCCCCCCCC
Confidence 568888765 344333 3454311 13444433333322 221 267779984 442 34
Q ss_pred CCHHHHHHH---HHHHHHHhCCCEEEeCCCCC--CcHHHHHHHHHc--CCcEEEeccccceeeeecCCcccccCCHHHHH
Q 022677 167 SSTNQAVDT---AVRILKEGGMDAIKLEGGSP--SRITAARGIVEA--GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAV 239 (293)
Q Consensus 167 ~s~e~av~~---A~rl~keaGa~gVkiEgg~~--~~~~~ikal~~~--GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~ 239 (293)
.+.++..+. -++.+.++|+|.+-+|--.. +...+++++.+. ++|++.-+-+. .+|...-|.+.+++.
T Consensus 133 ~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~~------~~g~l~~G~~~~~~~ 206 (304)
T PRK09485 133 LSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTLR------DGTHISDGTPLAEAA 206 (304)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEeC------CCCcCCCCCCHHHHH
Confidence 456665443 13344479999999996542 233445555545 89998654321 234444566544443
Q ss_pred HHHHHHHHHHHcCCcEEEecCCCH----HHHHHHHHhcCCCEEEeCCC
Q 022677 240 KVVETALALQEVGCFSVVLECVPP----PVAAAATSALQIPTIGIGAG 283 (293)
Q Consensus 240 e~l~rA~a~eeAGA~~IvlE~vp~----e~a~~It~~l~iPtIGIGaG 283 (293)
+.++ +..++++|-+=|..+ +..+.+.+.++.|++..-.+
T Consensus 207 ~~l~-----~~~~~~~iGiNC~~p~~~~~~l~~~~~~~~~pl~~~PNa 249 (304)
T PRK09485 207 ALLA-----ASPQVVAVGVNCTAPELVTAAIAALRAVTDKPLVVYPNS 249 (304)
T ss_pred HHHh-----cCCCceEEEecCCCHHHHHHHHHHHHhccCCcEEEECCC
Confidence 3332 123578888999864 34445555567887766543
No 200
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.78 E-value=0.3 Score=46.56 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=57.8
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCeEEeeCCC-CCCCCCHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~-~~p~vvaDmpf-Gsy~~s~e~av~~A~rl~k 181 (293)
-|+.++++|+|++++-- |.-...+-++++.|.+.|++++ +.|+++=|.|. -++..+++.. .++.+
T Consensus 95 ~a~~A~~~Gad~vlv~~---------P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l----~~L~~ 161 (309)
T cd00952 95 RTRALLDLGADGTMLGR---------PMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAW----AELAQ 161 (309)
T ss_pred HHHHHHHhCCCEEEECC---------CcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHH----HHHhc
Confidence 46888999999998742 3334456799999999999999 59999999993 2455666544 45654
Q ss_pred HhCCCEEEeCC
Q 022677 182 EGGMDAIKLEG 192 (293)
Q Consensus 182 eaGa~gVkiEg 192 (293)
--++.|||-.+
T Consensus 162 ~pnivgiKdss 172 (309)
T cd00952 162 IPQVVAAKYLG 172 (309)
T ss_pred CCCEEEEEecC
Confidence 45899999987
No 201
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=93.76 E-value=7.3 Score=38.07 Aligned_cols=188 Identities=13% Similarity=0.104 Sum_probs=112.2
Q ss_pred cCCHHHHHH-hhhCCCcEEEEecCCHHHHHH----HHHcCCcEEE-ECchhhhhhccCCCCccCCHHHHHHHHHHHHccc
Q 022677 78 RVTLTHLRQ-KHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (293)
Q Consensus 78 ~~t~~~Lr~-l~~~g~pi~m~tayD~~SAri----ae~AG~Dail-vGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~ 151 (293)
-++++++.+ -++++--+-..|+|+..+++. ||+.+.++|+ +..+. ....|.. .+..|...++..++..
T Consensus 9 lv~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~-~~~~g~~-----~~~~~~~~~~~~a~~a 82 (321)
T PRK07084 9 LVNTREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGA-RKYANAT-----LLRYMAQGAVEYAKEL 82 (321)
T ss_pred ccCHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhH-HhhCCch-----HHHHHHHHHHHHHHHc
Confidence 355555544 445566788899999999874 6777999998 43332 1112211 1455665556666544
Q ss_pred --CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceee
Q 022677 152 --KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAI 222 (293)
Q Consensus 152 --~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~ 222 (293)
+.| |+.-+.-| .+.|.. .+.+ ++|..+|.+-+... ....+++..-..|+.|=|=+|-++..+
T Consensus 83 ~~~VP-V~lHLDHg---~~~e~i----~~ai-~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~e 153 (321)
T PRK07084 83 GCPIP-IVLHLDHG---DSFELC----KDCI-DSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVE 153 (321)
T ss_pred CCCCc-EEEECCCC---CCHHHH----HHHH-HcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCcc
Confidence 567 66666653 345544 4567 58999999976531 233566777789999988887544322
Q ss_pred eecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec-----------------CCCHHHHHHHHHhc-CCCEEEeCCCC
Q 022677 223 SVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE-----------------CVPPPVAAAATSAL-QIPTIGIGAGP 284 (293)
Q Consensus 223 ~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE-----------------~vp~e~a~~It~~l-~iPtIGIGaG~ 284 (293)
.-..+-...--+.++|.+.+++ -|+|++=+- -+.-+..+.|.+.+ ++|+ .+-+|+
T Consensus 154 d~~~~~~~~~T~peeA~~Fv~~------TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPL-VLHGgS 226 (321)
T PRK07084 154 DEVSAEHHTYTQPEEVEDFVKK------TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPI-VLHGSS 226 (321)
T ss_pred CCccCcccccCCHHHHHHHHHH------hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCE-EEeCCC
Confidence 1110000001123444444433 688877431 12348899999999 6996 566677
Q ss_pred CCC
Q 022677 285 FCS 287 (293)
Q Consensus 285 ~~d 287 (293)
+++
T Consensus 227 g~~ 229 (321)
T PRK07084 227 SVP 229 (321)
T ss_pred CCc
Confidence 554
No 202
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.75 E-value=0.85 Score=43.08 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEec------C------------CCHHHHHHHHHhcCCCEEEeCC
Q 022677 238 AVKVVETALALQEVGCFSVVLE------C------------VPPPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 238 a~e~l~rA~a~eeAGA~~IvlE------~------------vp~e~a~~It~~l~iPtIGIGa 282 (293)
.++.++-++.++++|+|.|-+- . ...+.++.|.+.+++|+++-|.
T Consensus 227 ~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Gg 289 (327)
T cd02803 227 LEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGG 289 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCC
Confidence 3567888889999999999531 1 1126788999999999987653
No 203
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=93.73 E-value=2.5 Score=39.06 Aligned_cols=151 Identities=25% Similarity=0.311 Sum_probs=88.5
Q ss_pred CHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHH
Q 022677 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (293)
Q Consensus 101 D~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ 180 (293)
|.-.++++++.|.|+|++|.|.+. . -++|+.+...+++++ +.|.+. .| |+ +++.
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v--------~-~~~~~~~~~ik~~~~--~~Pvil--fp-~~----~~~i-------- 67 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGV--------S-STLDNVVRLIKRIRR--PVPVIL--FP-SN----PEAV-------- 67 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccch--------h-hhHHHHHHHHHHhcC--CCCEEE--eC-CC----cccc--------
Confidence 344678888899999999966533 2 367788877777766 566443 22 12 2222
Q ss_pred HHhCCCEEEeCC------CCCCcHHHHHHHHHcCCcEEEe----ccccceeeeec-C----CcccccCCHHHHHHHHHHH
Q 022677 181 KEGGMDAIKLEG------GSPSRITAARGIVEAGIAVMGH----VGLTPQAISVL-G----GFRPQGKNVTSAVKVVETA 245 (293)
Q Consensus 181 keaGa~gVkiEg------g~~~~~~~ikal~~~GIpV~GH----iGLtPq~~~~l-g----Gf~vqGrt~~~a~e~l~rA 245 (293)
.-|||++-+-- -.|..-..++++ |..++ ..+.|.-.-.+ + ++.-..++....+++..-|
T Consensus 68 -~~~aDa~l~~svlns~n~~~i~g~~~~~~-----~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA 141 (219)
T cd02812 68 -SPGADAYLFPSVLNSGDPYWIIGAQAEAA-----PEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYA 141 (219)
T ss_pred -CcCCCEEEEEeeecCCCchHHHHHHHHHH-----HHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHH
Confidence 13577776542 111111112212 22222 12233211000 0 1111334444567888899
Q ss_pred HHHHHcCCcEEEecC----CCHHHHHHHHHhc-CCCEEEeCCCC
Q 022677 246 LALQEVGCFSVVLEC----VPPPVAAAATSAL-QIPTIGIGAGP 284 (293)
Q Consensus 246 ~a~eeAGA~~IvlE~----vp~e~a~~It~~l-~iPtIGIGaG~ 284 (293)
++-+.-|--.+++|. ++.++++.+.+.+ ++|++ +|.|=
T Consensus 142 ~aae~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~~pl~-vGGGI 184 (219)
T cd02812 142 LAAEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLI-VGGGI 184 (219)
T ss_pred HHHHHcCCeEEEeCCCCCcCCHHHHHHHHHhcCCCCEE-EeCCC
Confidence 999999988999993 3478999999999 99999 57664
No 204
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=93.73 E-value=0.62 Score=43.73 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHh-CCCEEEeCCCCC--------CcHHHHHHHHH---cCCcEEEeccccceeeeecCCcccccCC
Q 022677 167 SSTNQAVDTAVRILKEG-GMDAIKLEGGSP--------SRITAARGIVE---AGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (293)
Q Consensus 167 ~s~e~av~~A~rl~kea-Ga~gVkiEgg~~--------~~~~~ikal~~---~GIpV~GHiGLtPq~~~~lgGf~vqGrt 234 (293)
.+.+...+.+..++ +. |++||-+-|... +...+++..++ ..+|++.++|
T Consensus 18 iD~~~~~~~i~~l~-~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~------------------ 78 (288)
T cd00954 18 INEDVLRAIVDYLI-EKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG------------------ 78 (288)
T ss_pred CCHHHHHHHHHHHH-hcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC------------------
Confidence 45665666655555 68 999999988531 12233333332 2366665533
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHHhc-CCCEEEeC
Q 022677 235 VTSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSAL-QIPTIGIG 281 (293)
Q Consensus 235 ~~~a~e~l~rA~a~eeAGA~~IvlE~v----p--~e~---a~~It~~l-~iPtIGIG 281 (293)
....+++++.++..+++|||++++=.. | +++ .+.|++.+ ++|++..-
T Consensus 79 ~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn 135 (288)
T cd00954 79 SLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYH 135 (288)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 124568899999999999999985322 2 344 34578889 89999763
No 205
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=93.72 E-value=5.6 Score=36.61 Aligned_cols=145 Identities=16% Similarity=0.226 Sum_probs=80.4
Q ss_pred HHHhhhCCCcE-EEEecCCHH----HHHHHHHcCCcEE-E-ECchhh-hhhccCCCCccCCHHHHHHHHHHHHcccCCCe
Q 022677 84 LRQKHKNGEPI-TMVTAYDYP----SAVHLDSAGIDIC-L-VGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (293)
Q Consensus 84 Lr~l~~~g~pi-~m~tayD~~----SAriae~AG~Dai-l-vGdSla-~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~ 155 (293)
++.++..+.|+ +-+...|.- .|+.+++ ++|+| + .|=... ++..|.-....-..+.+.+.+++|++ ++.|
T Consensus 65 ~~~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~p- 141 (233)
T cd02911 65 IKALKDSNVLVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVP- 141 (233)
T ss_pred HHHhhccCCeEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCC-
Confidence 33343334443 334444443 3455555 35777 3 442221 22334433334456677777888876 5677
Q ss_pred EEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC---CcHHHHHHHHHcCCcEEEeccccceeeeecCCccccc
Q 022677 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP---SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (293)
Q Consensus 156 vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~---~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqG 232 (293)
|.+=+.-| + + ++.++.+.. ++++|++++++..+.. .-...++.+. .+|||+|.=|+
T Consensus 142 VsvKir~g-~--~-~~~~~la~~-l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGgI--------------- 200 (233)
T cd02911 142 VSVKIRAG-V--D-VDDEELARL-IEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGNNSV--------------- 200 (233)
T ss_pred EEEEEcCC-c--C-cCHHHHHHH-HHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEECCc---------------
Confidence 66666643 4 2 455555544 5589999999976532 1234556554 57898875221
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEec
Q 022677 233 KNVTSAVKVVETALALQEVGCFSVVLE 259 (293)
Q Consensus 233 rt~~~a~e~l~rA~a~eeAGA~~IvlE 259 (293)
.|. ++++++.+.|||+|.+=
T Consensus 201 ~s~-------eda~~~l~~GaD~VmiG 220 (233)
T cd02911 201 TTI-------ESAKEMFSYGADMVSVA 220 (233)
T ss_pred CCH-------HHHHHHHHcCCCEEEEc
Confidence 343 34555556799998763
No 206
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.70 E-value=0.19 Score=47.87 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=63.9
Q ss_pred EEEEecCCH----HHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCC-CCCCC
Q 022677 94 ITMVTAYDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESS 168 (293)
Q Consensus 94 i~m~tayD~----~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfG-sy~~s 168 (293)
|+-.++.+. --|+.+++.|+|.+++- =|.-..-+.+++..|-++|+++++.|+++=+.|.- ++..+
T Consensus 77 iaG~g~~~t~eai~lak~a~~~Gad~il~v---------~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~ 147 (299)
T COG0329 77 IAGVGSNSTAEAIELAKHAEKLGADGILVV---------PPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLS 147 (299)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCEEEEe---------CCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCC
Confidence 334555543 34688999999999853 24445667899999999999999999999999942 23334
Q ss_pred HHHHHHHHHHHHHHhCCCEEEeCCCC
Q 022677 169 TNQAVDTAVRILKEGGMDAIKLEGGS 194 (293)
Q Consensus 169 ~e~av~~A~rl~keaGa~gVkiEgg~ 194 (293)
+|.. .++.+-..+.|||-..|.
T Consensus 148 ~e~i----~~la~~~nivgiKd~~gd 169 (299)
T COG0329 148 PETI----ARLAEHPNIVGVKDSSGD 169 (299)
T ss_pred HHHH----HHHhcCCCEEEEEeCCcC
Confidence 4444 566654589999999876
No 207
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.69 E-value=4 Score=39.43 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=71.7
Q ss_pred CCcEE---EEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCC
Q 022677 91 GEPIT---MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES 167 (293)
Q Consensus 91 g~pi~---m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~ 167 (293)
+-||+ |-++-|...|..+.++|-=-++.+ ..+.++.....+.++ +...+.+- +| .
T Consensus 34 ~~Piv~apM~~vt~~~ma~ava~~GglGvi~~--------------~~~~~~~~~~i~~vk---~~l~v~~~--~~-~-- 91 (325)
T cd00381 34 NIPLVSAPMDTVTESEMAIAMARLGGIGVIHR--------------NMSIEEQAEEVRKVK---GRLLVGAA--VG-T-- 91 (325)
T ss_pred CCCEEecCCCcCCcHHHHHHHHHCCCEEEEeC--------------CCCHHHHHHHHHHhc---cCceEEEe--cC-C--
Confidence 45664 346778888887777774333332 124577766666664 22222233 32 2
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeC--CCC-CCcHHHHHHHHHcC--CcEEEeccccceeeeecCCcccccCCHHHHHHHH
Q 022677 168 STNQAVDTAVRILKEGGMDAIKLE--GGS-PSRITAARGIVEAG--IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVV 242 (293)
Q Consensus 168 s~e~av~~A~rl~keaGa~gVkiE--gg~-~~~~~~ikal~~~G--IpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l 242 (293)
+ ++..+.+..++ ++|++.|-+. .|. +...+.++++.+.+ +|++.. ..-| .
T Consensus 92 ~-~~~~~~~~~l~-eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G----------------~v~t-------~ 146 (325)
T cd00381 92 R-EDDKERAEALV-EAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAG----------------NVVT-------A 146 (325)
T ss_pred C-hhHHHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEEC----------------CCCC-------H
Confidence 2 33455556777 5899987763 222 22356788888876 777621 0112 4
Q ss_pred HHHHHHHHcCCcEEEe
Q 022677 243 ETALALQEVGCFSVVL 258 (293)
Q Consensus 243 ~rA~a~eeAGA~~Ivl 258 (293)
+.|+.++++|||.|.+
T Consensus 147 ~~A~~l~~aGaD~I~v 162 (325)
T cd00381 147 EAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 5678888999999997
No 208
>PLN02417 dihydrodipicolinate synthase
Probab=93.68 E-value=0.66 Score=43.56 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=62.4
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCC-CCCCCCHHHHHHHHHHHHHHh
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpf-Gsy~~s~e~av~~A~rl~kea 183 (293)
|+.++++|+|++++-- |.-...+-++++.|-+.|++.+ |+++=|.|. -++..+++.. .++.+.-
T Consensus 89 a~~a~~~Gadav~~~~---------P~y~~~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l----~~l~~~p 153 (280)
T PLN02417 89 TEQGFAVGMHAALHIN---------PYYGKTSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVI----FKIAQHP 153 (280)
T ss_pred HHHHHHcCCCEEEEcC---------CccCCCCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHH----HHHhcCC
Confidence 5678899999998742 3334457799999999999975 988899994 4566777654 3555546
Q ss_pred CCCEEEeCCCCCCcHHHHHHHHHcCCcEE
Q 022677 184 GMDAIKLEGGSPSRITAARGIVEAGIAVM 212 (293)
Q Consensus 184 Ga~gVkiEgg~~~~~~~ikal~~~GIpV~ 212 (293)
.+.|||-..+. .. +.++...++.|+
T Consensus 154 ni~giKdss~~---~~-~~~~~~~~~~v~ 178 (280)
T PLN02417 154 NFAGVKECTGN---DR-VKQYTEKGILLW 178 (280)
T ss_pred CEEEEEeCCCc---HH-HHHHhcCCeEEE
Confidence 78999987654 22 233444466665
No 209
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=93.67 E-value=2.4 Score=41.00 Aligned_cols=126 Identities=20% Similarity=0.253 Sum_probs=69.8
Q ss_pred CHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHc-ccCCCeEEeeCCCCCC-CCCHHHHHHHHHH
Q 022677 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLVGDLPFGTY-ESSTNQAVDTAVR 178 (293)
Q Consensus 101 D~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~R-a~~~p~vvaDmpfGsy-~~s~e~av~~A~r 178 (293)
...-|+.+.++|+.+. +|+ .++ ++.|. |....-+.+++ ..+.| +++.+.-... +.+.+ .++.+++
T Consensus 72 n~~La~~a~~~g~~~~-~Gs-~~~---~~~~~------~~~~~~~~vr~~~~~~p-~i~nl~~~~~~~~~~~-~~~~~i~ 138 (333)
T TIGR02151 72 NRNLARAARELGIPMG-VGS-QRA---ALKDP------ETADTFEVVREEAPNGP-LIANIGAPQLVEGGPE-EAQEAID 138 (333)
T ss_pred HHHHHHHHHHcCCCeE-EcC-chh---hccCh------hhHhHHHHHHHhCCCCc-EEeecCchhhccccHH-HHHHHHH
Confidence 3445678889998766 453 222 34433 22333355555 45667 5565542111 11123 3444566
Q ss_pred HHHHhCCCEEEeC---------CCCCC--cHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHH
Q 022677 179 ILKEGGMDAIKLE---------GGSPS--RITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (293)
Q Consensus 179 l~keaGa~gVkiE---------gg~~~--~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~ 246 (293)
++ ++.+..+++. +.... ..+.++.+++. .+||.-.. .|+ |. ..+.|+
T Consensus 139 ~i-~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~----------~g~---g~-------~~~~a~ 197 (333)
T TIGR02151 139 MI-EADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKE----------VGF---GI-------SKEVAK 197 (333)
T ss_pred Hh-cCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEe----------cCC---CC-------CHHHHH
Confidence 66 4666666663 11110 12567888876 89998431 111 22 257889
Q ss_pred HHHHcCCcEEEecC
Q 022677 247 ALQEVGCFSVVLEC 260 (293)
Q Consensus 247 a~eeAGA~~IvlE~ 260 (293)
.++++|+|+|.+-+
T Consensus 198 ~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 198 LLADAGVSAIDVAG 211 (333)
T ss_pred HHHHcCCCEEEECC
Confidence 99999999999865
No 210
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=93.64 E-value=1.1 Score=44.31 Aligned_cols=128 Identities=20% Similarity=0.180 Sum_probs=79.1
Q ss_pred HHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC----C-----CcHHHHHHHHHcCCcE
Q 022677 141 LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----P-----SRITAARGIVEAGIAV 211 (293)
Q Consensus 141 l~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~----~-----~~~~~ikal~~~GIpV 211 (293)
+.=.|.+...-++|++. -+.--. +.|+++..+.+.++. .+|+|.||--... . +.....+++.++. ..
T Consensus 114 i~g~R~~lgv~~rPl~~-tiiKP~-GL~~~~~a~~~~~~~-~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~-~e 189 (364)
T cd08210 114 IAGLRALLGIPERPLLC-SALKPQ-GLSAAELAELAYAFA-LGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEAN-AE 189 (364)
T ss_pred hHHHHHHhCCCCCceEE-EEeccc-cCCHHHHHHHHHHHH-hcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHH-hh
Confidence 34457777777889554 333333 679999999999998 5999999876431 1 1111111111111 01
Q ss_pred EEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCCH--HHHHHHHHhcC-CCEEEeCCCC
Q 022677 212 MGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPP--PVAAAATSALQ-IPTIGIGAGP 284 (293)
Q Consensus 212 ~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~--e~a~~It~~l~-iPtIGIGaG~ 284 (293)
.|. +.- | ..+-|. ...++++||+..+++||+++.+--+.. ...+.++++.+ +|+..-=|+.
T Consensus 190 TG~------~~~----y-~~Nita-~~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aHra~~ 253 (364)
T cd08210 190 TGG------RTL----Y-APNVTG-PPTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELAEDFDFLPILAHPAFA 253 (364)
T ss_pred cCC------cce----E-EEecCC-CHHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHHhcCCCcEEEEccccc
Confidence 111 000 0 012222 245999999999999999999987763 56678888888 8988774443
No 211
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.58 E-value=0.69 Score=47.27 Aligned_cols=101 Identities=18% Similarity=0.213 Sum_probs=64.5
Q ss_pred HHHHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCC-CCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 81 LTHLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHD-TTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 81 ~~~Lr~l~~~--g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~-dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
+..++++++. +-+|..=|+-+.-.|+.+.++|+|+|.+|=+.+..+.... ....++--..+..+..+++..+.| ++
T Consensus 270 ~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~-vI 348 (495)
T PTZ00314 270 IDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVP-CI 348 (495)
T ss_pred HHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCe-EE
Confidence 3455555443 2344444899999999999999999987633332211100 001122234566777777777777 88
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 158 aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
+| |++ .++.+++ +.+ +.||++|.+=
T Consensus 349 ad---GGi-~~~~di~----kAl-a~GA~~Vm~G 373 (495)
T PTZ00314 349 AD---GGI-KNSGDIC----KAL-ALGADCVMLG 373 (495)
T ss_pred ec---CCC-CCHHHHH----HHH-HcCCCEEEEC
Confidence 88 777 5777774 456 5899999984
No 212
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=93.55 E-value=0.95 Score=41.45 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=69.4
Q ss_pred HcC-CcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEE
Q 022677 110 SAG-IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAI 188 (293)
Q Consensus 110 ~AG-~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gV 188 (293)
+.| +++|..-+ .+...-.+.++...++.+++..+.+|++-| + . ++..+.|++||
T Consensus 37 ~~G~v~~vQlR~---------K~l~~~~~~~~a~~l~~l~~~~gv~liINd-----~---~--------dlA~~~~adGV 91 (221)
T PRK06512 37 QGGDVASVILPQ---------YGLDEATFQKQAEKLVPVIQEAGAAALIAG-----D---S--------RIAGRVKADGL 91 (221)
T ss_pred cCCCccEEEEeC---------CCCCHHHHHHHHHHHHHHHHHhCCEEEEeC-----H---H--------HHHHHhCCCEE
Confidence 447 57776542 222223445556777777887788877765 1 2 23346799999
Q ss_pred EeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCC-HHHHHHHHHHHHHHHHcCCcEEEecCC------
Q 022677 189 KLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKN-VTSAVKVVETALALQEVGCFSVVLECV------ 261 (293)
Q Consensus 189 kiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt-~~~a~e~l~rA~a~eeAGA~~IvlE~v------ 261 (293)
+|-........ +.+ . ++..++.|-+ .....+ +...++.|||-|.+=.+
T Consensus 92 HLg~~d~~~~~----~r~----~-------------~~~~~iiG~s~~~s~~~----a~~A~~~gaDYv~~Gpv~t~tK~ 146 (221)
T PRK06512 92 HIEGNLAALAE----AIE----K-------------HAPKMIVGFGNLRDRHG----AMEIGELRPDYLFFGKLGADNKP 146 (221)
T ss_pred EECccccCHHH----HHH----h-------------cCCCCEEEecCCCCHHH----HHHhhhcCCCEEEECCCCCCCCC
Confidence 99632211112 221 1 1112234432 111112 22245799999987322
Q ss_pred ---C--HHHHHHHHHhcCCCEEEeCC
Q 022677 262 ---P--PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 262 ---p--~e~a~~It~~l~iPtIGIGa 282 (293)
| .+..+++++.+++|++.||+
T Consensus 147 ~~~p~gl~~l~~~~~~~~iPvvAIGG 172 (221)
T PRK06512 147 EAHPRNLSLAEWWAEMIEIPCIVQAG 172 (221)
T ss_pred CCCCCChHHHHHHHHhCCCCEEEEeC
Confidence 2 36778889999999999994
No 213
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.53 E-value=0.88 Score=44.71 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=65.6
Q ss_pred HHHHHHhhhCCCcEEEE-ecCCHHHHHHHHHcCCcEEEECchhhhhhcc-CCCCccCCHHHHHHHHHHHHcccCCCeEEe
Q 022677 81 LTHLRQKHKNGEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHG-HDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (293)
Q Consensus 81 ~~~Lr~l~~~g~pi~m~-tayD~~SAriae~AG~DailvGdSla~~~lG-~~dt~~vtl~eml~h~raV~Ra~~~p~vva 158 (293)
++.||+.+ +.+.++- |+-++--|+.+.++|+|+|.||=..+..+-+ .-++..++.=..+..|...++....| |++
T Consensus 141 ik~ir~~~--p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~-VIa 217 (343)
T TIGR01305 141 VKLVREAF--PEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGH-IIS 217 (343)
T ss_pred HHHHHhhC--CCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCe-EEE
Confidence 44444443 2345555 5999999999999999999988444444333 23334445556677777777776777 999
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
| |+.. +..+.+ +.+ ..||++|.+=
T Consensus 218 D---GGIr-~~gDI~----KAL-A~GAd~VMlG 241 (343)
T TIGR01305 218 D---GGCT-CPGDVA----KAF-GAGADFVMLG 241 (343)
T ss_pred c---CCcC-chhHHH----HHH-HcCCCEEEEC
Confidence 9 5553 334442 445 5899999985
No 214
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=93.51 E-value=1.7 Score=42.74 Aligned_cols=107 Identities=18% Similarity=0.138 Sum_probs=60.4
Q ss_pred CcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEE-EECch---hhhhhcc-----CCCCccCCHH----HHHHH
Q 022677 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVGDS---AAMVVHG-----HDTTLPITLE----EMLVH 143 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dai-lvGdS---la~~~lG-----~~dt~~vtl~----eml~h 143 (293)
+.+|..++.+..++= .-.|+.+.+||||.| +-+.. +-.-.|- -.|--.=+++ -.++.
T Consensus 138 ~~mt~~eI~~ii~~f----------~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~ei 207 (382)
T cd02931 138 RELTTEEVETFVGKF----------GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEI 207 (382)
T ss_pred CcCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHH
Confidence 568888888766531 127889999999999 43311 1111000 0110011333 34677
Q ss_pred HHHHHcccCCCeEE-eeC--------------C---CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC
Q 022677 144 CRAVARGAKRPLLV-GDL--------------P---FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS 194 (293)
Q Consensus 144 ~raV~Ra~~~p~vv-aDm--------------p---fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~ 194 (293)
+++|++.++.-|.+ .=+ | +..-+.+.+++++-+.++ ++.|+|.|.+-+|.
T Consensus 208 i~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l-~~~gvD~l~vs~g~ 275 (382)
T cd02931 208 VEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKIL-EEAGYDALDVDAGS 275 (382)
T ss_pred HHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHH-HHhCCCEEEeCCCC
Confidence 77888777544322 211 0 111123688888887665 47899999998653
No 215
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=93.47 E-value=6.9 Score=36.89 Aligned_cols=115 Identities=18% Similarity=0.190 Sum_probs=70.1
Q ss_pred CcEEEEecCC--H----HHHHHHHHcCCcEEEECch----hh-----hhhccCCCCccCCHHHHHHHHHHHHcccCCCeE
Q 022677 92 EPITMVTAYD--Y----PSAVHLDSAGIDICLVGDS----AA-----MVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (293)
Q Consensus 92 ~pi~m~tayD--~----~SAriae~AG~DailvGdS----la-----~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~v 156 (293)
..+.-+|+=| . --++..+++|+|+|=+|-- ++ ..+.-..=-..+++++.+..++.+++..+.|++
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~v 95 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIV 95 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE
Confidence 4566667654 2 2255677889999955521 11 000000002347888999999999877667743
Q ss_pred EeeCCCCCCCCCH-H-HHHHHHHHHHHHhCCCEEEeCCCC-CCcHHHHHHHHHcCCcEE
Q 022677 157 VGDLPFGTYESST-N-QAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (293)
Q Consensus 157 vaDmpfGsy~~s~-e-~av~~A~rl~keaGa~gVkiEgg~-~~~~~~ikal~~~GIpV~ 212 (293)
. .+| .|+ - ..+++-.+..+++|+++|-+=|=. ++..+..+.+.+.||...
T Consensus 96 l-----m~Y-~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I 148 (263)
T CHL00200 96 I-----FTY-YNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELI 148 (263)
T ss_pred E-----Eec-ccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Confidence 2 234 233 1 133444555678999999998843 234567778889998876
No 216
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.46 E-value=0.84 Score=40.95 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=58.8
Q ss_pred CCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 79 VTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 79 ~t~~~Lr~l~~~-g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
.++..+.+..++ ....+++.+.+.--++.++++|+|++.++- .|+..............++.++..++.| ++
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~------~g~t~~~~~~~~~~~~~i~~i~~~~~iP-vi 177 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTL------SGYTEETKKPEEPDFALLKELLKAVGCP-VI 177 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCC------ceeecCCCCCCCcCHHHHHHHHHhCCCC-EE
Confidence 455555554444 344566788888888999999999986531 1222111011111244556676666778 55
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 158 aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
+. |+. .+++++ .+++ +.|+++|-+=
T Consensus 178 a~---GGI-~t~~~~----~~~l-~~GadgV~iG 202 (221)
T PRK01130 178 AE---GRI-NTPEQA----KKAL-ELGAHAVVVG 202 (221)
T ss_pred EE---CCC-CCHHHH----HHHH-HCCCCEEEEc
Confidence 54 455 467776 4566 5899999874
No 217
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=93.44 E-value=3.9 Score=36.19 Aligned_cols=144 Identities=14% Similarity=0.118 Sum_probs=78.3
Q ss_pred EEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcc-cCCCeEEeeCCCCCCCCCHHHHHH
Q 022677 96 MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG-AKRPLLVGDLPFGTYESSTNQAVD 174 (293)
Q Consensus 96 m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra-~~~p~vvaDmpfGsy~~s~e~av~ 174 (293)
.++-.+.-.++.+.++|+|++-.=. --.+...++.++...-.+.+.+. ...+ |++| .++++.
T Consensus 3 iCGi~~~ed~~~a~~~Gvd~ig~i~-------~~~s~R~v~~~~a~~l~~~~~~~~~~V~-v~vn-------~~~~~i-- 65 (203)
T cd00405 3 ICGITTLEDALAAAEAGADAIGFIF-------APKSPRYVSPEQAREIVAALPPFVKRVG-VFVN-------EDLEEI-- 65 (203)
T ss_pred ECCCCCHHHHHHHHHcCCCEEEEec-------CCCCCCCCCHHHHHHHHHhCCCCCcEEE-EEeC-------CCHHHH--
Confidence 3455667788999999999994311 11355566666655433333221 2222 2222 234555
Q ss_pred HHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHH-cCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCC
Q 022677 175 TAVRILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGC 253 (293)
Q Consensus 175 ~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~-~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA 253 (293)
.++.++.|+++|+|.+.. ....++.+.+ .|.+++ ++.+-+.....++ .++ .+.||
T Consensus 66 --~~ia~~~~~d~Vqlhg~e--~~~~~~~l~~~~~~~~i----------------~~i~~~~~~~~~~---~~~-~~~~a 121 (203)
T cd00405 66 --LEIAEELGLDVVQLHGDE--SPEYCAQLRARLGLPVI----------------KAIRVKDEEDLEK---AAA-YAGEV 121 (203)
T ss_pred --HHHHHhcCCCEEEECCCC--CHHHHHHHHhhcCCcEE----------------EEEecCChhhHHH---hhh-ccccC
Confidence 345567899999998753 2334565654 244433 1122221111111 222 34799
Q ss_pred cEEEecCCCH------------HHHHHHHHhcCCCEEEeCC
Q 022677 254 FSVVLECVPP------------PVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 254 ~~IvlE~vp~------------e~a~~It~~l~iPtIGIGa 282 (293)
|.++++.-.. +..+.+. .++|++.+|.
T Consensus 122 D~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGG 160 (203)
T cd00405 122 DAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGG 160 (203)
T ss_pred CEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECC
Confidence 9999997421 3444444 5789998773
No 218
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=93.43 E-value=5.7 Score=37.97 Aligned_cols=180 Identities=16% Similarity=0.190 Sum_probs=109.5
Q ss_pred HHHhhhCCCcEEEEecCCHHHHH----HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEee
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAr----iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaD 159 (293)
|++-.+++--+-..|+||..+++ .||+.+.++|+--.....-.+ +++.+...++..++..+.| |..-
T Consensus 9 l~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~--------~~~~~~~~~~~~a~~~~vP-ValH 79 (287)
T PF01116_consen 9 LKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYM--------GLEYLAAMVKAAAEEASVP-VALH 79 (287)
T ss_dssp HHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHH--------HHHHHHHHHHHHHHHSTSE-EEEE
T ss_pred HHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhh--------hHHHHHHHHHHHHHHcCCC-EEee
Confidence 34444567778999999999986 567889999973222222122 5777788889999989888 5555
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeeecCC-cc-c
Q 022677 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISVLGG-FR-P 230 (293)
Q Consensus 160 mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgG-f~-v 230 (293)
+.-| . +.+.. .+.+ +.|.++|.+-+... ...++++.....|+.|=|=+|-+...+..... .. -
T Consensus 80 LDH~-~--~~e~i----~~ai-~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~ 151 (287)
T PF01116_consen 80 LDHG-K--DFEDI----KRAI-DAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETE 151 (287)
T ss_dssp EEEE----SHHHH----HHHH-HHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-T
T ss_pred cccC-C--CHHHH----HHHH-HhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCcccccccc
Confidence 5543 2 34443 4556 47999999976542 13356666678899999888855433211100 00 0
Q ss_pred ccCCHHHHHHHHHHHHHH-HHcCCcEEEe---------cC--CC---HHHHHHHHHhc-CCCEEEeCCCCCCC
Q 022677 231 QGKNVTSAVKVVETALAL-QEVGCFSVVL---------EC--VP---PPVAAAATSAL-QIPTIGIGAGPFCS 287 (293)
Q Consensus 231 qGrt~~~a~e~l~rA~a~-eeAGA~~Ivl---------E~--vp---~e~a~~It~~l-~iPtIGIGaG~~~d 287 (293)
.--|+ -+.|+.+ ++-|+|+|=+ .. -| -+..+.|.+.+ ++|+. +-+|++..
T Consensus 152 ~~~Td------P~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLV-lHGgSG~~ 217 (287)
T PF01116_consen 152 SLYTD------PEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLV-LHGGSGLP 217 (287)
T ss_dssp TCSSS------HHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEE-ESSCTTS-
T ss_pred ccccC------HHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEE-EECCCCCC
Confidence 11121 1233333 5789999864 23 34 48999999999 99965 66666653
No 219
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.41 E-value=0.69 Score=41.49 Aligned_cols=96 Identities=22% Similarity=0.271 Sum_probs=58.0
Q ss_pred CHHHHH-HhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEe
Q 022677 80 TLTHLR-QKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (293)
Q Consensus 80 t~~~Lr-~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vva 158 (293)
++..+. ..++.+...+++++.+.--+..++++|+|.+.++ ..|+.+...-+....+...+.++...+.| +++
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~------~~g~t~~~~~~~~~~~~~l~~i~~~~~ip-via 182 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTT------LSGYTEETAKTEDPDFELLKELRKALGIP-VIA 182 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEcc------CccccccccCCCCCCHHHHHHHHHhcCCC-EEE
Confidence 444444 4444454667888999889999999999998653 11221111001111234566676666778 555
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
. |+. .+++++ .+++ +.|+++|-+=
T Consensus 183 ~---GGI-~~~~~~----~~~l-~~GadgV~vG 206 (219)
T cd04729 183 E---GRI-NSPEQA----AKAL-ELGADAVVVG 206 (219)
T ss_pred e---CCC-CCHHHH----HHHH-HCCCCEEEEc
Confidence 4 445 356666 4566 5899999874
No 220
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=93.40 E-value=1.3 Score=41.90 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------CcHHHHHHHH---HcCCcEEEeccccceeeeecCCcccccCCH
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP--------SRITAARGIV---EAGIAVMGHVGLTPQAISVLGGFRPQGKNV 235 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~--------~~~~~ikal~---~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~ 235 (293)
.+.+..-+.+-.++ +.|++|+-+=|... +...+++... +..+||+.|+| .
T Consensus 23 iD~~~l~~li~~l~-~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~----------------~-- 83 (296)
T TIGR03249 23 FDEAAYRENIEWLL-GYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG----------------G-- 83 (296)
T ss_pred cCHHHHHHHHHHHH-hcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC----------------c--
Confidence 45555545544444 79999999987531 1223333322 33477776643 1
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHHhcCCCEEEeC
Q 022677 236 TSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSALQIPTIGIG 281 (293)
Q Consensus 236 ~~a~e~l~rA~a~eeAGA~~IvlE~v----p--~e~---a~~It~~l~iPtIGIG 281 (293)
...++++.++.++++|||++++-.. + +++ .+.|++.+++|++.+-
T Consensus 84 -~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 84 -NTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred -cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 2468899999999999999987432 1 233 3557788899999775
No 221
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=93.40 E-value=1.2 Score=42.01 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHHhC-CCEEEeCCCCC--------CcHHHHHHHH---HcCCcEEEeccccceeeeecCCcccccCC
Q 022677 167 SSTNQAVDTAVRILKEGG-MDAIKLEGGSP--------SRITAARGIV---EAGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaG-a~gVkiEgg~~--------~~~~~ikal~---~~GIpV~GHiGLtPq~~~~lgGf~vqGrt 234 (293)
.+.+...+.+..++ +.| +++|-+-|... +...+++..+ ...+||+.|+|
T Consensus 18 iD~~~~~~~i~~~i-~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~------------------ 78 (290)
T TIGR00683 18 INEKGLRQIIRHNI-DKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG------------------ 78 (290)
T ss_pred cCHHHHHHHHHHHH-hCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC------------------
Confidence 45555555555555 688 99999887521 1223333332 23478887654
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCC-----C-HHHHH---HHHHhc-CCCEEEe
Q 022677 235 VTSAVKVVETALALQEVGCFSVVLECV-----P-PPVAA---AATSAL-QIPTIGI 280 (293)
Q Consensus 235 ~~~a~e~l~rA~a~eeAGA~~IvlE~v-----p-~e~a~---~It~~l-~iPtIGI 280 (293)
....++.++.++..+++|||++++-.. . +++.. .|+++. ++|++-.
T Consensus 79 ~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 79 SVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 113467899999999999999998433 1 34443 456666 6999865
No 222
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=93.35 E-value=2.6 Score=43.06 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=91.1
Q ss_pred HHHHHHHcCCcEEEECchhh-hhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEe--eC--CCCCCCCCHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG--DL--PFGTYESSTNQAVDTAVR 178 (293)
Q Consensus 104 SAriae~AG~DailvGdSla-~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vva--Dm--pfGsy~~s~e~av~~A~r 178 (293)
-|...+++|++.|=+|.... .++..|-+.. ++ |.+ +.+++..+...+.+ -- -. +|..-+++.++.-++
T Consensus 30 Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~--p~-e~l---~~l~~~~~~~~l~~l~r~~N~~-G~~~~~dDvv~~fv~ 102 (467)
T PRK14041 30 ALEAFDRMGFYSMEVWGGATFDVCVRFLNEN--PW-ERL---KEIRKRLKNTKIQMLLRGQNLV-GYRHYADDVVELFVK 102 (467)
T ss_pred HHHHHHHcCCCEEEecCCccchhhhcccCCC--HH-HHH---HHHHHhCCCCEEEEEecccccc-CcccccchhhHHHHH
Confidence 57778899999996542111 1122332222 23 333 44444433222221 11 12 354446676666555
Q ss_pred HHHHhCCCEEEeCCCCCC---cHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcE
Q 022677 179 ILKEGGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFS 255 (293)
Q Consensus 179 l~keaGa~gVkiEgg~~~---~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~ 255 (293)
...+.|++.+.+-+.... ....++.+.+.|..+.+-+..+ .+ -+. ..+.+++-++.++++||+.
T Consensus 103 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t------~~-----p~~--t~e~~~~~a~~l~~~Gad~ 169 (467)
T PRK14041 103 KVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYT------VS-----PVH--TLEYYLEFARELVDMGVDS 169 (467)
T ss_pred HHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEec------cC-----CCC--CHHHHHHHHHHHHHcCCCE
Confidence 555799999999986421 3355677788998888665311 00 011 2467788899999999999
Q ss_pred EEecC-----CCH---HHHHHHHHhcCCCE
Q 022677 256 VVLEC-----VPP---PVAAAATSALQIPT 277 (293)
Q Consensus 256 IvlE~-----vp~---e~a~~It~~l~iPt 277 (293)
|.+-= .|. ++.+.+.+++++|+
T Consensus 170 I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI 199 (467)
T PRK14041 170 ICIKDMAGLLTPKRAYELVKALKKKFGVPV 199 (467)
T ss_pred EEECCccCCcCHHHHHHHHHHHHHhcCCce
Confidence 99872 242 66777777788774
No 223
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=93.35 E-value=0.86 Score=45.01 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=64.6
Q ss_pred cCCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeE
Q 022677 78 RVTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (293)
Q Consensus 78 ~~t~~~Lr~l~~~-g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~v 156 (293)
..|..+++.+.+. +.|+++=++-+.-.|+.+.++|+|.|.|+.+.+-.. |+..-+++. +..|++..+.| |
T Consensus 222 ~~~w~~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrql----d~~~~~~~~----L~ei~~~~~~~-v 292 (361)
T cd04736 222 SFNWQDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQL----DDAIAPIEA----LAEIVAATYKP-V 292 (361)
T ss_pred cCCHHHHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCC----cCCccHHHH----HHHHHHHhCCe-E
Confidence 4566666665432 468999999999999999999999999875443322 222223333 33444445566 8
Q ss_pred EeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 157 vaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
++| |++ .+..+++ +.+ ..||++|-+-
T Consensus 293 i~d---GGI-r~g~Dv~----KAL-aLGA~aV~iG 318 (361)
T cd04736 293 LID---SGI-RRGSDIV----KAL-ALGANAVLLG 318 (361)
T ss_pred EEe---CCC-CCHHHHH----HHH-HcCCCEEEEC
Confidence 888 777 4666664 456 5899999884
No 224
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=93.24 E-value=1.5 Score=42.48 Aligned_cols=179 Identities=20% Similarity=0.183 Sum_probs=103.3
Q ss_pred CcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHH--HcCCcEEEECchhhhhhccCCCCccCC-HHHHHHHHHHHHcc-cC
Q 022677 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLD--SAGIDICLVGDSAAMVVHGHDTTLPIT-LEEMLVHCRAVARG-AK 152 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae--~AG~DailvGdSla~~~lG~~dt~~vt-l~eml~h~raV~Ra-~~ 152 (293)
...|..+||-++...+ +.-+|--|.+..-.=. +||.|+|.| .+.+++..-+.|-..-. ..++-..+.+|+|. ++
T Consensus 30 ~~l~~~df~g~~g~nE-~LnlT~Pd~I~~IH~aY~eAGADiIeT-NTFgat~i~lady~led~v~~in~~aa~iAR~aA~ 107 (311)
T COG0646 30 YGLDEADFRGLKGNNE-LLNLTKPDVIEAIHRAYIEAGADIIET-NTFGATTIKLADYGLEDKVYEINQKAARIARRAAD 107 (311)
T ss_pred cCCcHHhhccccCChH-HHhcCCcHHHHHHHHHHHhccCcEEEe-cCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHh
Confidence 3577778887544444 5667777777765433 789999998 56666544444432111 23444444444442 22
Q ss_pred ------CCeEEeeCCCCC--------CCCCHHH---HHHHHHHHHHHhCCCEEEeCCCCCC--cHHHHHHHHHcC-----
Q 022677 153 ------RPLLVGDLPFGT--------YESSTNQ---AVDTAVRILKEGGMDAIKLEGGSPS--RITAARGIVEAG----- 208 (293)
Q Consensus 153 ------~p~vvaDmpfGs--------y~~s~e~---av~~A~rl~keaGa~gVkiEgg~~~--~~~~ikal~~~G----- 208 (293)
.-||.++|+=.+ |..+-++ +.+-.++.+.++|||++-||--... +-..+.++.+..
T Consensus 108 ~~~~~k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~ 187 (311)
T COG0646 108 EAGDPKPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGV 187 (311)
T ss_pred hcCCCCceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCC
Confidence 346667774322 1233444 3333445555899999999964321 223344444444
Q ss_pred -CcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC-H-HHHHHH
Q 022677 209 -IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP-P-PVAAAA 269 (293)
Q Consensus 209 -IpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp-~-e~a~~I 269 (293)
+|+|.|.-+ .. .|...-|.+.+.+ ...++.+|+|++=+-|-- + ++...|
T Consensus 188 ~LPv~~s~Ti-----~~-sG~tl~Gq~~~a~------~~~l~~~~~~~vGlNCa~Gp~~m~~~l 239 (311)
T COG0646 188 RLPVMISGTI-----TD-SGRTLSGQTIEAF------LNSLEHLGPDAVGLNCALGPDEMRPHL 239 (311)
T ss_pred cccEEEEEEE-----ec-CceecCCCcHHHH------HHHhhccCCcEEeeccccCHHHHHHHH
Confidence 899987432 22 4666678776554 455677899999999864 3 444444
No 225
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.17 E-value=1.6 Score=44.67 Aligned_cols=70 Identities=21% Similarity=0.385 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHH
Q 022677 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (293)
Q Consensus 100 yD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl 179 (293)
.+...+..+-++|+|+|.+ |+. +|+... .+...+.+++..+.-.|++ |+- .|.+++ ..+
T Consensus 241 ~~~~~~~~l~~ag~d~i~i-d~a----~G~s~~-------~~~~i~~ik~~~~~~~v~a----G~V-~t~~~a----~~~ 299 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVV-DSS----QGNSIY-------QIDMIKKLKSNYPHVDIIA----GNV-VTADQA----KNL 299 (495)
T ss_pred HHHHHHHHHHHCCCCEEEE-ecC----CCCchH-------HHHHHHHHHhhCCCceEEE----CCc-CCHHHH----HHH
Confidence 4456777788899999987 442 443322 2445566666544333555 444 567777 445
Q ss_pred HHHhCCCEEEeC
Q 022677 180 LKEGGMDAIKLE 191 (293)
Q Consensus 180 ~keaGa~gVkiE 191 (293)
+ ++|||+|++-
T Consensus 300 ~-~aGad~I~vg 310 (495)
T PTZ00314 300 I-DAGADGLRIG 310 (495)
T ss_pred H-HcCCCEEEEC
Confidence 5 7999999973
No 226
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=93.17 E-value=3.7 Score=39.47 Aligned_cols=104 Identities=19% Similarity=0.173 Sum_probs=57.3
Q ss_pred HHHHHHhhhCCCcE-EEEecCC--------HHHHHHHHHcC--CcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHc
Q 022677 81 LTHLRQKHKNGEPI-TMVTAYD--------YPSAVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR 149 (293)
Q Consensus 81 ~~~Lr~l~~~g~pi-~m~tayD--------~~SAriae~AG--~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~R 149 (293)
++++++.+..+.|+ +-++..+ .-.+..+++++ +|+|-.=-|.-+.. |... .-..+.+.+.+++|++
T Consensus 118 ~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~-g~~~--~~~~~~~~~iv~av~~ 194 (327)
T cd04738 118 AKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP-GLRD--LQGKEALRELLTAVKE 194 (327)
T ss_pred HHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC-cccc--ccCHHHHHHHHHHHHH
Confidence 44454433223443 4455554 23555666655 88885432333321 2222 2344555667778877
Q ss_pred ccC-----CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 150 GAK-----RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 150 a~~-----~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
.++ .| |.+=++. + .+.++..+.+.. ++++||++|.+-+
T Consensus 195 ~~~~~~~~~P-v~vKl~~--~-~~~~~~~~ia~~-l~~aGad~I~~~n 237 (327)
T cd04738 195 ERNKLGKKVP-LLVKIAP--D-LSDEELEDIADV-ALEHGVDGIIATN 237 (327)
T ss_pred HHhhcccCCC-eEEEeCC--C-CCHHHHHHHHHH-HHHcCCcEEEEEC
Confidence 765 67 5666653 2 245666665554 4579999999765
No 227
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=93.14 E-value=2 Score=41.62 Aligned_cols=106 Identities=14% Similarity=0.152 Sum_probs=61.1
Q ss_pred CcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEE-C---chh----hhhhccCCCCccCCH----HHHHHHH
Q 022677 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-G---DSA----AMVVHGHDTTLPITL----EEMLVHC 144 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dailv-G---dSl----a~~~lG~~dt~~vtl----~eml~h~ 144 (293)
+..|..++++..++ + .-.|+.+.++|||.|-+ + .-+ +-...--.|.-.=++ .-.++.+
T Consensus 129 ~~mt~~eI~~ii~~---f-------~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv 198 (343)
T cd04734 129 KAMEEEDIEEIIAA---F-------ADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVL 198 (343)
T ss_pred CcCCHHHHHHHHHH---H-------HHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHH
Confidence 56888888887652 1 13778889999999943 2 110 100000001111133 3446777
Q ss_pred HHHHcccCCCeEE-eeCCCC---CCCCCHHHHHHHHHHHHHHhC-CCEEEeCCC
Q 022677 145 RAVARGAKRPLLV-GDLPFG---TYESSTNQAVDTAVRILKEGG-MDAIKLEGG 193 (293)
Q Consensus 145 raV~Ra~~~p~vv-aDmpfG---sy~~s~e~av~~A~rl~keaG-a~gVkiEgg 193 (293)
++|++.++.+|.+ .=+..- .-+.+.+++++.+..+- +.| +|.|.+-+|
T Consensus 199 ~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~-~~G~vd~i~vs~g 251 (343)
T cd04734 199 AAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLA-AEGLIDYVNVSAG 251 (343)
T ss_pred HHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHH-hcCCCCEEEeCCC
Confidence 8888888776543 322211 11236888988876654 677 899999544
No 228
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.13 E-value=3.3 Score=38.12 Aligned_cols=151 Identities=10% Similarity=0.102 Sum_probs=92.2
Q ss_pred HHHHHHHH-cCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 022677 103 PSAVHLDS-AGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 103 ~SAriae~-AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~k 181 (293)
..|+..++ .|+|-+.+=|-=++ .-|.+.. +...+.|++.+..| +.+| |+. .|.|++ .+++
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n--------~~~I~~i~~~~~~p-i~vG---GGI-rs~e~v----~~~l- 95 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIGA-KAQHARE--------FDYIKSLRRLTTKD-IEVG---GGI-RTKSQI----MDYF- 95 (234)
T ss_pred HHHHHHHhccCCCEEEEEECccc-ccCCcch--------HHHHHHHHhhcCCe-EEEc---CCc-CCHHHH----HHHH-
Confidence 57777777 79999976564322 1233322 44557777777777 6666 667 577776 5677
Q ss_pred HhCCCEEEeCCCC-CCcHHHHHHHHHcC-CcEEEeccccceeeeecCC-cccccCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 022677 182 EGGMDAIKLEGGS-PSRITAARGIVEAG-IAVMGHVGLTPQAISVLGG-FRPQGKNVTSAVKVVETALALQEVGCFSVVL 258 (293)
Q Consensus 182 eaGa~gVkiEgg~-~~~~~~ikal~~~G-IpV~GHiGLtPq~~~~lgG-f~vqGrt~~~a~e~l~rA~a~eeAGA~~Ivl 258 (293)
+.||+-|-+ |.. ..-+..++.+.+.- =+++ -.-+. .+| ....|-.+....++++-++.+++.|+..+++
T Consensus 96 ~~Ga~kvvi-gt~a~~~~~~l~~~~~~fg~~iv------vslD~-~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~ 167 (234)
T PRK13587 96 AAGINYCIV-GTKGIQDTDWLKEMAHTFPGRIY------LSVDA-YGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIY 167 (234)
T ss_pred HCCCCEEEE-CchHhcCHHHHHHHHHHcCCCEE------EEEEe-eCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 689999977 432 12345566665521 1111 11111 122 1123322223346678888899999998887
Q ss_pred cCC---------CHHHHHHHHHhcCCCEEEe
Q 022677 259 ECV---------PPPVAAAATSALQIPTIGI 280 (293)
Q Consensus 259 E~v---------p~e~a~~It~~l~iPtIGI 280 (293)
-.+ .-++++.+.+..++|+|.=
T Consensus 168 tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~ 198 (234)
T PRK13587 168 TDIAKDGKMSGPNFELTGQLVKATTIPVIAS 198 (234)
T ss_pred ecccCcCCCCccCHHHHHHHHHhCCCCEEEe
Confidence 666 2588899999999999843
No 229
>TIGR00035 asp_race aspartate racemase.
Probab=93.10 E-value=0.23 Score=45.10 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHHhcCCCEEEeC
Q 022677 235 VTSAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 235 ~~~a~e~l~rA~a~eeAGA~~IvlE~vp-~e~a~~It~~l~iPtIGIG 281 (293)
++-...+++.++.++++|||.|++.|-+ +.....+.+++++|+++|.
T Consensus 58 ~~~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~ 105 (229)
T TIGR00035 58 DRPRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMI 105 (229)
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechH
Confidence 3345678888999999999999999987 4668899999999999863
No 230
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.10 E-value=0.78 Score=45.12 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=66.6
Q ss_pred HcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 022677 110 SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (293)
Q Consensus 110 ~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVk 189 (293)
.+|.|+|.+ |+. +||... ++...+.|+..-|..+|++ |+- .+.|.+ ..|+ ++|||+||
T Consensus 120 ~~g~D~ivi-D~A----hGhs~~-------~i~~ik~ik~~~P~~~vIa----GNV-~T~e~a----~~Li-~aGAD~vK 177 (346)
T PRK05096 120 SPALNFICI-DVA----NGYSEH-------FVQFVAKAREAWPDKTICA----GNV-VTGEMV----EELI-LSGADIVK 177 (346)
T ss_pred CCCCCEEEE-ECC----CCcHHH-------HHHHHHHHHHhCCCCcEEE----ecc-cCHHHH----HHHH-HcCCCEEE
Confidence 379999998 654 676544 3666777777666555664 344 456655 4567 69999999
Q ss_pred eCCCCCC-----------------cHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcC
Q 022677 190 LEGGSPS-----------------RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVG 252 (293)
Q Consensus 190 iEgg~~~-----------------~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAG 252 (293)
+==|.-. +....++..+.|+|++. .||.+--| + -+||+. +|
T Consensus 178 VGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIA-----------DGGi~~sG----D------I~KAla-aG 235 (346)
T PRK05096 178 VGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVS-----------DGGCTVPG----D------VAKAFG-GG 235 (346)
T ss_pred EcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEe-----------cCCccccc----H------HHHHHH-cC
Confidence 7544210 11233444566888874 56665544 2 345553 89
Q ss_pred CcEEEecC
Q 022677 253 CFSVVLEC 260 (293)
Q Consensus 253 A~~IvlE~ 260 (293)
||++.+=.
T Consensus 236 Ad~VMlGs 243 (346)
T PRK05096 236 ADFVMLGG 243 (346)
T ss_pred CCEEEeCh
Confidence 99998754
No 231
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.09 E-value=1.6 Score=43.08 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=45.0
Q ss_pred CHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHH
Q 022677 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (293)
Q Consensus 101 D~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ 180 (293)
..--++.+.++|+|+|.+--......++.... .++++....+. .+.|++.+|. .+.+.+ .+++
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~---~~~~i~~~ik~----~~ipVIaG~V------~t~e~A----~~l~ 205 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEG---EPLNLKEFIYE----LDVPVIVGGC------VTYTTA----LHLM 205 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcC---CHHHHHHHHHH----CCCCEEEeCC------CCHHHH----HHHH
Confidence 34678888999999998743333334444433 34455444333 4677544342 355655 4566
Q ss_pred HHhCCCEEEeC
Q 022677 181 KEGGMDAIKLE 191 (293)
Q Consensus 181 keaGa~gVkiE 191 (293)
++|||+|++-
T Consensus 206 -~aGAD~V~VG 215 (368)
T PRK08649 206 -RTGAAGVLVG 215 (368)
T ss_pred -HcCCCEEEEC
Confidence 5999999985
No 232
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=93.07 E-value=5.3 Score=38.34 Aligned_cols=98 Identities=20% Similarity=0.211 Sum_probs=61.6
Q ss_pred CcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccC-------CCC----------ccCCHHH
Q 022677 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGH-------DTT----------LPITLEE 139 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~-------~dt----------~~vtl~e 139 (293)
+.+|..++++..+.= .-.|+.+.++|||.|=+= ..+|| |-+ .+=-+..
T Consensus 142 ~~mt~~eI~~ii~~~----------~~aA~~a~~aGfDgVei~-----~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf 206 (336)
T cd02932 142 RELTREEIAEVVDAF----------VAAARRAVEAGFDVIEIH-----AAHGYLLHQFLSPLSNKRTDEYGGSLENRMRF 206 (336)
T ss_pred CcCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEc-----cccccHHHHhcCCccCCCCcccCCCHHHHhHH
Confidence 568888887765421 137888899999999431 01222 111 1122345
Q ss_pred HHHHHHHHHcccCCCe-EEeeCCC-----CCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 140 MLVHCRAVARGAKRPL-LVGDLPF-----GTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 140 ml~h~raV~Ra~~~p~-vvaDmpf-----Gsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
.++.+++|++.++.-| |..|+.. +++ +.+++++.+.++ ++.|++.|.+-.
T Consensus 207 ~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~--~~~e~~~ia~~L-e~~gvd~iev~~ 262 (336)
T cd02932 207 LLEVVDAVRAVWPEDKPLFVRISATDWVEGGW--DLEDSVELAKAL-KELGVDLIDVSS 262 (336)
T ss_pred HHHHHHHHHHHcCCCceEEEEEcccccCCCCC--CHHHHHHHHHHH-HHcCCCEEEECC
Confidence 5788888888874332 5577652 234 688888877665 478999998753
No 233
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=93.06 E-value=1.4 Score=42.27 Aligned_cols=98 Identities=23% Similarity=0.329 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCC-------------C--------------CcHHHHHHHHHc---CCcEEEecccccee
Q 022677 172 AVDTAVRILKEGGMDAIKLEGGS-------------P--------------SRITAARGIVEA---GIAVMGHVGLTPQA 221 (293)
Q Consensus 172 av~~A~rl~keaGa~gVkiEgg~-------------~--------------~~~~~ikal~~~---GIpV~GHiGLtPq~ 221 (293)
-++.|.+.. ++|.|+|+|-.+. . ...++++++.++ ++|+.- .+.|.
T Consensus 156 ~~~aA~~a~-~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~v--ri~~~- 231 (336)
T cd02932 156 FVAAARRAV-EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFV--RISAT- 231 (336)
T ss_pred HHHHHHHHH-HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEE--EEccc-
Confidence 445555554 7999999998531 0 013566666653 344442 12221
Q ss_pred eeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec----------CC-C---HHHHHHHHHhcCCCEEEeC
Q 022677 222 ISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE----------CV-P---PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 222 ~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE----------~v-p---~e~a~~It~~l~iPtIGIG 281 (293)
++.-.|.+ .++.++-+++++++|.|.|-+- .+ + .+.++.|.+.+++|+++-|
T Consensus 232 -----~~~~~g~~---~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G 297 (336)
T cd02932 232 -----DWVEGGWD---LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVG 297 (336)
T ss_pred -----ccCCCCCC---HHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeC
Confidence 12223444 3567888888999999988741 22 2 3677889999999998654
No 234
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.03 E-value=3 Score=38.85 Aligned_cols=165 Identities=16% Similarity=0.224 Sum_probs=103.9
Q ss_pred CCCcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCC
Q 022677 75 PNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP 154 (293)
Q Consensus 75 ~~~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p 154 (293)
+-+++|...|++|- +|-..-|....++|.|+|.-|=..|...-|.. +| .+..+++-.+.+.|
T Consensus 40 pl~~VT~EeL~~M~----------~~t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~------~d--~ei~~~ie~~~~v~ 101 (238)
T COG3473 40 PLKNVTPEELLKME----------SYTERAALELADAGVDVIVYGCTSGSLIGGPG------YD--KEIAQRIEEAKGVP 101 (238)
T ss_pred ccccCCHHHHHHHH----------HHHHHHHHhcCccccCEEEEeccceeeecCCc------hh--HHHHHHHHhccCCc
Confidence 45789999999873 34555777778899999975443333333311 12 22234455555556
Q ss_pred eEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC--CCcHHHHHHHHHcCCcEEEeccccceeeeecCCccccc
Q 022677 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (293)
Q Consensus 155 ~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~--~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqG 232 (293)
.+. + .-|+= +.++.-|+.-|.+---. +...+.++.+..+|+.+.--.||-= .+=+-+|
T Consensus 102 vvT----------t-s~Avv---~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi------~dn~eig 161 (238)
T COG3473 102 VVT----------T-STAVV---EALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGI------TDNLEIG 161 (238)
T ss_pred eee----------c-hHHHH---HHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCC------cccchhc
Confidence 221 1 12322 33444577777664321 1223456778899999986544211 1112245
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEecCCC---HHHHHHHHHhcCCCEEE
Q 022677 233 KNVTSAVKVVETALALQEVGCFSVVLECVP---PPVAAAATSALQIPTIG 279 (293)
Q Consensus 233 rt~~~a~e~l~rA~a~eeAGA~~IvlE~vp---~e~a~~It~~l~iPtIG 279 (293)
|- +-.++++-|+++..=|+|+||+-|.- -+.+..+-+.+++|++.
T Consensus 162 r~--~P~~~y~lAk~~~~~~~DaiFiSCTnlRt~eii~~lE~~~G~PVvs 209 (238)
T COG3473 162 RQ--EPWAVYRLAKEVFTPDADAIFISCTNLRTFEIIEKLERDTGVPVVS 209 (238)
T ss_pred cc--ChHHHHHHHHHhcCCCCCeEEEEeeccccHHHHHHHHHHhCCceee
Confidence 54 23578999999999999999999975 49999999999999983
No 235
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.99 E-value=1.2 Score=45.48 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=66.4
Q ss_pred CCHHHHHHhhhC--CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhh--hccCCCCccCCHHHHHHHHHHHHcccCCC
Q 022677 79 VTLTHLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV--VHGHDTTLPITLEEMLVHCRAVARGAKRP 154 (293)
Q Consensus 79 ~t~~~Lr~l~~~--g~pi~m~tayD~~SAriae~AG~DailvGdSla~~--~lG~~dt~~vtl~eml~h~raV~Ra~~~p 154 (293)
..+..+++.++. +-|+..=|+-++-.|+.+.++|+|+|-||-..|.. .-++.+- .++.-.-+..|...++..+.|
T Consensus 252 ~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~-g~~~~~a~~~~~~~~~~~~~~ 330 (475)
T TIGR01303 252 KMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGV-GRPQFSAVLECAAEARKLGGH 330 (475)
T ss_pred HHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCC-CCchHHHHHHHHHHHHHcCCc
Confidence 334445555443 34544445999999999999999999877654443 2333332 334444445555555555667
Q ss_pred eEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 155 ~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
+++| |++ .++.+.+ +.+ .+||++|.+-+
T Consensus 331 -viad---Ggi-~~~~di~----kal-a~GA~~vm~g~ 358 (475)
T TIGR01303 331 -VWAD---GGV-RHPRDVA----LAL-AAGASNVMVGS 358 (475)
T ss_pred -EEEe---CCC-CCHHHHH----HHH-HcCCCEEeech
Confidence 9999 777 4777774 456 58999998854
No 236
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=92.97 E-value=5.7 Score=37.55 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=69.8
Q ss_pred HHHhhhCCCcE--EEEecCCH------HHHHHHHHcCCcEEEECchhhhhhccCCC------------CccCCHHHHHHH
Q 022677 84 LRQKHKNGEPI--TMVTAYDY------PSAVHLDSAGIDICLVGDSAAMVVHGHDT------------TLPITLEEMLVH 143 (293)
Q Consensus 84 Lr~l~~~g~pi--~m~tayD~------~SAriae~AG~DailvGdSla~~~lG~~d------------t~~vtl~eml~h 143 (293)
|+++++++++. .-+|+=|. --.+.++++|+|+|=+|--.+- =+.| -..+++++.+..
T Consensus 1 f~~lk~~~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSD---P~ADGpvIq~A~~rAL~~G~~~~~~~~~ 77 (259)
T PF00290_consen 1 FAELKKEGRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSD---PVADGPVIQKASQRALKNGFTLEKIFEL 77 (259)
T ss_dssp HHHHHHTTBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSS---CTTSSHHHHHHHHHHHHTT--HHHHHHH
T ss_pred ChhHHhCCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC---CCCCCHHHHHHHHHHHHCCCCHHHHHHH
Confidence 44555555544 33455432 2345567889999965422110 0011 134789999999
Q ss_pred HHHHH-cccCCCeEEeeCCCCCCCCCHH--HHHHHHHHHHHHhCCCEEEeCCCC-CCcHHHHHHHHHcCCcEEE
Q 022677 144 CRAVA-RGAKRPLLVGDLPFGTYESSTN--QAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMG 213 (293)
Q Consensus 144 ~raV~-Ra~~~p~vvaDmpfGsy~~s~e--~av~~A~rl~keaGa~gVkiEgg~-~~~~~~ikal~~~GIpV~G 213 (293)
++.++ +..+.|++. .+|- |+- ..++.=.+..+++|++|+-|=|=. ++..+..+.+.+.||+..-
T Consensus 78 ~~~ir~~~~~~pivl-----m~Y~-N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 78 VKEIRKKEPDIPIVL-----MTYY-NPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIP 145 (259)
T ss_dssp HHHHHHHCTSSEEEE-----EE-H-HHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEE
T ss_pred HHHHhccCCCCCEEE-----Eeec-cHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEE
Confidence 99999 677777554 2452 331 234433455668999999999843 3345666777789998764
No 237
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=92.93 E-value=1.7 Score=41.31 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------CcHHHHHHH---HHcCCcEEEeccccceeeeecCCcccccCCH
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP--------SRITAARGI---VEAGIAVMGHVGLTPQAISVLGGFRPQGKNV 235 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~--------~~~~~ikal---~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~ 235 (293)
.+.+..-+.+ +.+.+.|++||-+=|... +...+++.. ++..+||+.|+| .
T Consensus 25 iD~~~l~~li-~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~------------------~ 85 (303)
T PRK03620 25 FDEAAYREHL-EWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG------------------G 85 (303)
T ss_pred cCHHHHHHHH-HHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC------------------C
Confidence 4555544444 444478999999988531 112333333 333578876643 1
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCCC------HHH---HHHHHHhcCCCEEEeC
Q 022677 236 TSAVKVVETALALQEVGCFSVVLECVP------PPV---AAAATSALQIPTIGIG 281 (293)
Q Consensus 236 ~~a~e~l~rA~a~eeAGA~~IvlE~vp------~e~---a~~It~~l~iPtIGIG 281 (293)
...+.++.++..+++|||++++-... +++ .+.|++..++|++.+-
T Consensus 86 -~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 86 -GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred -CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 23678999999999999999875431 223 4557888899999774
No 238
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=92.92 E-value=0.35 Score=46.16 Aligned_cols=106 Identities=25% Similarity=0.314 Sum_probs=64.5
Q ss_pred EEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC------------------CcHHHHHHHHH-cCCcEEEecc
Q 022677 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP------------------SRITAARGIVE-AGIAVMGHVG 216 (293)
Q Consensus 156 vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~------------------~~~~~ikal~~-~GIpV~GHiG 216 (293)
+++=+- | .+++...+.|.. +.+.|+++|.|-=|.+ ....+++++.+ .++||.-=+.
T Consensus 56 ~~~Ql~-g---~~~~~~~~aa~~-~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR 130 (309)
T PF01207_consen 56 LIVQLF-G---NDPEDLAEAAEI-VAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIR 130 (309)
T ss_dssp EEEEEE-----S-HHHHHHHHHH-HCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEE
T ss_pred eeEEEe-e---ccHHHHHHHHHh-hhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecc
Confidence 555543 2 467777777654 5467999999986631 23355666664 3566653322
Q ss_pred ccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecC---------CC-HHHHHHHHHhcCCCEEEeC
Q 022677 217 LTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC---------VP-PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 217 LtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~---------vp-~e~a~~It~~l~iPtIGIG 281 (293)
.|-. ++-++.++-++.++++|++.|.|-+ .+ -+.++.|.+.+++|+|+=|
T Consensus 131 --------------~g~~-~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NG 190 (309)
T PF01207_consen 131 --------------LGWD-DSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANG 190 (309)
T ss_dssp --------------SECT---CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEES
T ss_pred --------------cccc-cchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcC
Confidence 1211 3346789999999999999999987 33 3888999999999998644
No 239
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=92.92 E-value=4.8 Score=37.70 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=71.0
Q ss_pred HHHhhhCCCcEEE--EecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCC
Q 022677 84 LRQKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (293)
Q Consensus 84 Lr~l~~~g~pi~m--~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmp 161 (293)
|+++.++|+++.. ++..+...+.++..+|+|.+++ |. --+.++++++...++++ +..+.+ .++=.|
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G~D~v~i-D~---------EHg~~~~~~~~~~i~a~-~~~g~~-~lVRvp 77 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLGLAGFDWLVL-DG---------EHAPNDVSTFIPQLMAL-KGSASA-PVVRVP 77 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEE-cc---------ccCCCCHHHHHHHHHHH-hhcCCC-cEEECC
Confidence 8888888988643 4568889999999999999998 31 12356788888888876 445444 344556
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHH-HcCCcEEEeccccc
Q 022677 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGLTP 219 (293)
Q Consensus 162 fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~-~~GIpV~GHiGLtP 219 (293)
.. ++... .|.+ +.|+++|.+-- .+...+ +++++ ..--|=.|.-|+.|
T Consensus 78 ~~----~~~~i----~r~L-D~Ga~giivP~-v~tae~-a~~~v~a~kypP~G~Rg~~~ 125 (256)
T PRK10558 78 TN----EPVII----KRLL-DIGFYNFLIPF-VETAEE-ARRAVASTRYPPEGIRGVSV 125 (256)
T ss_pred CC----CHHHH----HHHh-CCCCCeeeecC-cCCHHH-HHHHHHHcCCCCCCcCCCCc
Confidence 53 23333 4677 79999997753 322333 34333 33334444444433
No 240
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=92.91 E-value=0.96 Score=42.90 Aligned_cols=120 Identities=18% Similarity=0.290 Sum_probs=74.8
Q ss_pred CcCCHHHHHHhh---h--CCCcEEE----EecC-CHH-----HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHH
Q 022677 77 QRVTLTHLRQKH---K--NGEPITM----VTAY-DYP-----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEML 141 (293)
Q Consensus 77 ~~~t~~~Lr~l~---~--~g~pi~m----~tay-D~~-----SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml 141 (293)
..+|+.++...- . .+.++++ .+.| |.- ..|+.+++|+|++-+=|+ .++.
T Consensus 56 ~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na~rl~~eaGa~aVkiEgg----------------~~~~ 119 (263)
T TIGR00222 56 LPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNAARVMQETGANAVKLEGG----------------EWLV 119 (263)
T ss_pred CCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcCc----------------HhHH
Confidence 457777665421 2 2456666 2455 422 347888899999976553 4556
Q ss_pred HHHHHHHcccCCCeE-------E-eeCCCCCC---CCC---HHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHH-H
Q 022677 142 VHCRAVARGAKRPLL-------V-GDLPFGTY---ESS---TNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV-E 206 (293)
Q Consensus 142 ~h~raV~Ra~~~p~v-------v-aDmpfGsy---~~s---~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~-~ 206 (293)
...+.+.+ .+.|++ . +-. +|+| +.+ .+++++-|..+. ++||+++.+|+=. .+.+++++ +
T Consensus 120 ~~i~~l~~-~gIpV~gHiGltPq~a~~-~ggy~~qgrt~~~a~~~i~~A~a~e-~AGA~~ivlE~vp---~~~a~~It~~ 193 (263)
T TIGR00222 120 ETVQMLTE-RGVPVVGHLGLTPQSVNI-LGGYKVQGKDEEAAKKLLEDALALE-EAGAQLLVLECVP---VELAAKITEA 193 (263)
T ss_pred HHHHHHHH-CCCCEEEecCCCceeEee-cCCeeecCCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCc---HHHHHHHHHh
Confidence 66666655 446754 1 221 1445 233 446777776654 8999999999854 46677774 6
Q ss_pred cCCcEEEeccccc
Q 022677 207 AGIAVMGHVGLTP 219 (293)
Q Consensus 207 ~GIpV~GHiGLtP 219 (293)
..||+.| ||=-|
T Consensus 194 l~iP~iG-IGaG~ 205 (263)
T TIGR00222 194 LAIPVIG-IGAGN 205 (263)
T ss_pred CCCCEEe-eccCC
Confidence 7899998 65334
No 241
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=92.91 E-value=2.6 Score=41.70 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCcEEEECchhhh-h-hccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDSAAM-V-VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (293)
Q Consensus 103 ~SAriae~AG~DailvGdSla~-~-~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ 180 (293)
-.|+.++++|+|+|=.--|.-+ + ..|+-....-..+.+.+-+++|++.++.| |.+=|.- .+ .+..+. .+.+
T Consensus 117 ~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~P-v~vKl~p-~~-~~~~~~----a~~~ 189 (420)
T PRK08318 117 EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLP-VIVKLTP-NI-TDIREP----ARAA 189 (420)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCc-EEEEcCC-Cc-ccHHHH----HHHH
Confidence 3567778899999943212211 1 11221112234566777888888888888 6666653 23 233332 3445
Q ss_pred HHhCCCEEEe
Q 022677 181 KEGGMDAIKL 190 (293)
Q Consensus 181 keaGa~gVki 190 (293)
+++||++|-+
T Consensus 190 ~~~Gadgi~~ 199 (420)
T PRK08318 190 KRGGADAVSL 199 (420)
T ss_pred HHCCCCEEEE
Confidence 5899999983
No 242
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=92.89 E-value=6.2 Score=37.05 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=85.3
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEe
Q 022677 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (293)
Q Consensus 79 ~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vva 158 (293)
--++.|++..++-...++.++||..++..+++. +|++.+|.... +--+++ +.+.+ ++.| |+.
T Consensus 76 ~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lkI~s~~~------------~n~~LL---~~~a~-~gkP-Vil 137 (260)
T TIGR01361 76 EGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQIGARNM------------QNFELL---KEVGK-QGKP-VLL 137 (260)
T ss_pred HHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEEECcccc------------cCHHHH---HHHhc-CCCc-EEE
Confidence 345556665555556688899999999999998 99999984331 112333 44443 6778 444
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCC-CEEEeCCCCC---------CcHHHHHHHHH-cCCcEEEeccccceeeeecCC
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGM-DAIKLEGGSP---------SRITAARGIVE-AGIAVMGHVGLTPQAISVLGG 227 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa-~gVkiEgg~~---------~~~~~ikal~~-~GIpV~GHiGLtPq~~~~lgG 227 (293)
=.+. . .+.++... |++.+++.|. +.+-+|-|.. .-...+..+.+ -+.||+ +.|-+ +
T Consensus 138 k~G~--~-~t~~e~~~-Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~----~ds~H--s--- 204 (260)
T TIGR01361 138 KRGM--G-NTIEEWLY-AAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPII----VDPSH--A--- 204 (260)
T ss_pred eCCC--C-CCHHHHHH-HHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEE----EcCCC--C---
Confidence 4443 2 35565544 4455556777 5666674321 01123444554 378876 22221 1
Q ss_pred cccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC
Q 022677 228 FRPQGKNVTSAVKVVETALALQEVGCFSVVLECV 261 (293)
Q Consensus 228 f~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v 261 (293)
.|+. +-+..-+++-..+||++||+|.-
T Consensus 205 ---~G~r----~~~~~~~~aAva~Ga~gl~iE~H 231 (260)
T TIGR01361 205 ---AGRR----DLVIPLAKAAIAAGADGLMIEVH 231 (260)
T ss_pred ---CCcc----chHHHHHHHHHHcCCCEEEEEeC
Confidence 2322 12334577778999999999954
No 243
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=92.77 E-value=1.6 Score=41.14 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=69.5
Q ss_pred EEeeCCCCCCCCCHHHHHHHHHHH-HHHhCCCEEEeCC--CCCCcHHHHHHHHHcCCcEEEeccccceeeee-cCCcccc
Q 022677 156 LVGDLPFGTYESSTNQAVDTAVRI-LKEGGMDAIKLEG--GSPSRITAARGIVEAGIAVMGHVGLTPQAISV-LGGFRPQ 231 (293)
Q Consensus 156 vvaDmpfGsy~~s~e~av~~A~rl-~keaGa~gVkiEg--g~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~-lgGf~vq 231 (293)
|+.|+=+|.- -++++.+.+. .++.|+|++.+-. |.....+.++...+.|. .++++-.+.|. -..|.-.
T Consensus 89 VilD~K~~DI----pnTv~~~a~a~~~~~g~D~vTvh~~~G~d~l~~~~~~~~~~~~----~v~VlvlTSnp~~~~lq~~ 160 (261)
T TIGR02127 89 VLADVKRGDI----GSTASAYAKAWLGHLHADALTVSPYLGLDSLRPFLEYARANGA----GIFVLVKTSNPGGADLQDL 160 (261)
T ss_pred EEEEeeccCh----HHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHHHhhcCC----EEEEEEeCCCCCHHHHhhh
Confidence 8899988644 3333333333 4367899999885 33334454554444343 22333333221 1112111
Q ss_pred cCCH--HHHHHHHHHHHHHHHc----CCcEEEecCCCHHHHHHHHHhcC-CCEE--EeCC
Q 022677 232 GKNV--TSAVKVVETALALQEV----GCFSVVLECVPPPVAAAATSALQ-IPTI--GIGA 282 (293)
Q Consensus 232 Grt~--~~a~e~l~rA~a~eeA----GA~~IvlE~vp~e~a~~It~~l~-iPtI--GIGa 282 (293)
+-.. .-++.+++.++.+.++ |++++|+.+..++.++.|.+.++ .|++ |||+
T Consensus 161 ~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~gAT~p~e~~~iR~~~~~~~il~PGiga 220 (261)
T TIGR02127 161 RVSDGRTVYEEVAELAGELNESPGDCSSVGAVVGATSPGDLLRLRIEMPTAPFLVPGFGA 220 (261)
T ss_pred hccCCCCHHHHHHHHHHHhccccCcCCceEEEECCCCHHHHHHHHHhCCCCeEEeCCcCC
Confidence 1111 2457888889888887 89999999988777788877753 4555 7774
No 244
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=92.76 E-value=3.3 Score=38.87 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=59.4
Q ss_pred HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCe-EEeeCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 022677 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL-LVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (293)
Q Consensus 107 iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~-vvaDmpfGsy~~s~e~av~~A~rl~keaGa 185 (293)
.+.++|+|.|-+.+.+.- ++.+...++.++. .+.-+ +..++.+++. .+++...+.+.++. +.|+
T Consensus 99 ~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~-~G~~v~~~i~~~~~~~-~~~~~~~~~~~~~~-~~Ga 163 (275)
T cd07937 99 KAAKNGIDIFRIFDALND------------VRNLEVAIKAVKK-AGKHVEGAICYTGSPV-HTLEYYVKLAKELE-DMGA 163 (275)
T ss_pred HHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHH-CCCeEEEEEEecCCCC-CCHHHHHHHHHHHH-HcCC
Confidence 455779999987655432 5666666666643 23322 2246666544 68888888776765 7999
Q ss_pred CEEEeCCCCC-----CcHHHHHHHHHc-CCcEEEe
Q 022677 186 DAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (293)
Q Consensus 186 ~gVkiEgg~~-----~~~~~ikal~~~-GIpV~GH 214 (293)
+.|.|-|-.. ....+++++.++ ++|+--|
T Consensus 164 ~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H 198 (275)
T cd07937 164 DSICIKDMAGLLTPYAAYELVKALKKEVGLPIHLH 198 (275)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 9999999532 233455555543 5677666
No 245
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=92.69 E-value=2.5 Score=41.19 Aligned_cols=128 Identities=20% Similarity=0.253 Sum_probs=82.2
Q ss_pred ccCCCCccCCHHHHHHHHHHHHcccCCCeEE-----eeCCCCCCCCCH--HHHHHHHHHHHHHhCCCEEEeCCCCCCcHH
Q 022677 127 HGHDTTLPITLEEMLVHCRAVARGAKRPLLV-----GDLPFGTYESST--NQAVDTAVRILKEGGMDAIKLEGGSPSRIT 199 (293)
Q Consensus 127 lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv-----aDmpfGsy~~s~--e~av~~A~rl~keaGa~gVkiEgg~~~~~~ 199 (293)
+|.......+.+.+-...+.++..++.|+.+ ...|++-+.... ....+.+--++++.|+-.+..+-|.. ..+
T Consensus 40 lG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~-~~~ 118 (336)
T COG2070 40 LGIIASGGLPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGAP-PAE 118 (336)
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCcchhcccccccccchhheecccccchHHhhhhHHhcCCCCEEeccCCCC-cHH
Confidence 4455555566677777778887778888432 111122111111 11122222345555899999988731 367
Q ss_pred HHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC-----------C---HHH
Q 022677 200 AARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-----------P---PPV 265 (293)
Q Consensus 200 ~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v-----------p---~e~ 265 (293)
.++++.+.|++|..-+. ..+.|+.++++|+|+|+.++. . ..+
T Consensus 119 ~i~~~~~~g~~v~~~v~------------------------~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~L 174 (336)
T COG2070 119 FVARLKAAGIKVIHSVI------------------------TVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFAL 174 (336)
T ss_pred HHHHHHHcCCeEEEEeC------------------------CHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHH
Confidence 78888889998862111 145789999999999999876 2 368
Q ss_pred HHHHHHhcC-CCEEE
Q 022677 266 AAAATSALQ-IPTIG 279 (293)
Q Consensus 266 a~~It~~l~-iPtIG 279 (293)
..+|.+.++ ||+|.
T Consensus 175 v~ev~~~~~~iPViA 189 (336)
T COG2070 175 VPEVVDAVDGIPVIA 189 (336)
T ss_pred HHHHHHHhcCCCEEE
Confidence 899999999 99983
No 246
>PLN02417 dihydrodipicolinate synthase
Probab=92.66 E-value=0.66 Score=43.54 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------CcHHHHHHHH---HcCCcEEEeccccceeeeecCCcccccCCH
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP--------SRITAARGIV---EAGIAVMGHVGLTPQAISVLGGFRPQGKNV 235 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~--------~~~~~ikal~---~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~ 235 (293)
.+.+...+.+..++ +.|++||-+-|... +...+++..+ +..+|++.|+| .
T Consensus 19 iD~~~~~~~i~~l~-~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~------------------~ 79 (280)
T PLN02417 19 FDLEAYDSLVNMQI-ENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG------------------S 79 (280)
T ss_pred cCHHHHHHHHHHHH-HcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC------------------C
Confidence 45555555554555 68999999988531 1122333222 33478887754 1
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCC-----C-HHHHHH---HHHhcCCCEEEe
Q 022677 236 TSAVKVVETALALQEVGCFSVVLECV-----P-PPVAAA---ATSALQIPTIGI 280 (293)
Q Consensus 236 ~~a~e~l~rA~a~eeAGA~~IvlE~v-----p-~e~a~~---It~~l~iPtIGI 280 (293)
....++++.++..+++|||++++-.. + +++.++ |.+. . |++-.
T Consensus 80 ~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~-~-pi~lY 131 (280)
T PLN02417 80 NSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDM-G-PTIIY 131 (280)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhh-C-CEEEE
Confidence 13468899999999999999998643 1 344443 4554 4 98855
No 247
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=92.66 E-value=1.3 Score=43.81 Aligned_cols=90 Identities=21% Similarity=0.323 Sum_probs=58.3
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcc----c---CCCeEEeeCCCC
Q 022677 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG----A---KRPLLVGDLPFG 163 (293)
Q Consensus 91 g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra----~---~~p~vvaDmpfG 163 (293)
+-|++.=++.++-.|+.+.++|+|.|.+|-..+...-+ ..+..+++.+.+..+.+.++- + ..| |++| |
T Consensus 188 ~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~-~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vp-VIAd---G 262 (369)
T TIGR01304 188 DVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRL-VLGIEVPMATAIADVAAARRDYLDETGGRYVH-VIAD---G 262 (369)
T ss_pred CCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCccccc-ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCce-EEEe---C
Confidence 46665447999999998888999999966433322111 111346666666666555441 2 245 8899 6
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 164 TYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 164 sy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
+. .+.++.+ +.+ ..||++|.+=
T Consensus 263 GI-~tg~di~----kAl-AlGAdaV~iG 284 (369)
T TIGR01304 263 GI-ETSGDLV----KAI-ACGADAVVLG 284 (369)
T ss_pred CC-CCHHHHH----HHH-HcCCCEeeeH
Confidence 66 4667773 556 5899999883
No 248
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=92.66 E-value=1.5 Score=42.93 Aligned_cols=120 Identities=20% Similarity=0.332 Sum_probs=78.0
Q ss_pred CCcCCHHHHHHhh---hCC--CcEEE---E-ecC--CHH-----HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHH
Q 022677 76 NQRVTLTHLRQKH---KNG--EPITM---V-TAY--DYP-----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEE 139 (293)
Q Consensus 76 ~~~~t~~~Lr~l~---~~g--~pi~m---~-tay--D~~-----SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~e 139 (293)
.-.+|+.++-... .++ .++++ | ..| +.- ..|+..++|++++-.-|+. .+
T Consensus 75 T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~---------------~~ 139 (332)
T PLN02424 75 TLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS---------------PS 139 (332)
T ss_pred CCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc---------------HH
Confidence 3468888776533 333 56665 2 335 222 3467688999999654332 46
Q ss_pred HHHHHHHHHcccCCCeE----E---eeCCCCCCC---CC---HHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHH-
Q 022677 140 MLVHCRAVARGAKRPLL----V---GDLPFGTYE---SS---TNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV- 205 (293)
Q Consensus 140 ml~h~raV~Ra~~~p~v----v---aDmpfGsy~---~s---~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~- 205 (293)
++..+++++ ..+.|++ . .+.-+|+|. .+ .++.++-|..+ +++||.+|-||+=. .+++++|+
T Consensus 140 ~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~al-e~AGAf~ivLE~Vp---~~la~~It~ 214 (332)
T PLN02424 140 RVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALAL-QEAGCFAVVLECVP---APVAAAITS 214 (332)
T ss_pred HHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHH-HHcCCcEEEEcCCc---HHHHHHHHH
Confidence 678888887 4667854 1 455567762 22 34567776554 58999999999854 45677775
Q ss_pred HcCCcEEEecc
Q 022677 206 EAGIAVMGHVG 216 (293)
Q Consensus 206 ~~GIpV~GHiG 216 (293)
+..||+.| ||
T Consensus 215 ~l~IPtIG-IG 224 (332)
T PLN02424 215 ALQIPTIG-IG 224 (332)
T ss_pred hCCCCEEe-ec
Confidence 56899998 55
No 249
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=92.64 E-value=9.1 Score=36.89 Aligned_cols=147 Identities=26% Similarity=0.341 Sum_probs=81.3
Q ss_pred CHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCeEEeeCCCCCC-CCCHHHHHHHHHH
Q 022677 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTY-ESSTNQAVDTAVR 178 (293)
Q Consensus 101 D~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~-~p~vvaDmpfGsy-~~s~e~av~~A~r 178 (293)
..--|+.+.++|.-+ .+|+-.+ |+-+. |...-.+.++..++ .| +++++.-... +.++++. +.+++
T Consensus 71 n~~La~~a~~~g~~~-~~Gs~~~----~~~~~------e~~~~~~~vr~~~~~~p-~~~Nl~~~~~~~~~~~~~-~~~i~ 137 (326)
T cd02811 71 NRNLAEAAEELGIAM-GVGSQRA----ALEDP------ELAESFTVVREAPPNGP-LIANLGAVQLNGYGVEEA-RRAVE 137 (326)
T ss_pred HHHHHHHHHHcCCCe-EecCchh----hccCh------hhhhHHHHHHHhCCCce-EEeecCccccCCCCHHHH-HHHHH
Confidence 345677788888653 4553221 22232 23344466666676 55 5555543111 1245554 33345
Q ss_pred HHHHhCCCEEEe----C-----CCCCC--cHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHH
Q 022677 179 ILKEGGMDAIKL----E-----GGSPS--RITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (293)
Q Consensus 179 l~keaGa~gVki----E-----gg~~~--~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~ 246 (293)
++ ++.+..+++ | +.... ..+.++.+++. .+||+-.. .|+ |.+ .+.|+
T Consensus 138 ~~-~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~----------~g~---g~s-------~~~a~ 196 (326)
T cd02811 138 MI-EADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKE----------VGF---GIS-------RETAK 196 (326)
T ss_pred hc-CCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEe----------cCC---CCC-------HHHHH
Confidence 44 344444454 2 11110 12567888876 89998431 122 333 57889
Q ss_pred HHHHcCCcEEEecC-----------------------------CC-HHHHHHHHHhc-CCCEEEeC
Q 022677 247 ALQEVGCFSVVLEC-----------------------------VP-PPVAAAATSAL-QIPTIGIG 281 (293)
Q Consensus 247 a~eeAGA~~IvlE~-----------------------------vp-~e~a~~It~~l-~iPtIGIG 281 (293)
.++++|+|+|.+-+ +| .+.+..+.+.+ ++|+|.=|
T Consensus 197 ~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasG 262 (326)
T cd02811 197 RLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASG 262 (326)
T ss_pred HHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEEC
Confidence 99999999999643 33 25556666667 79988644
No 250
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=92.60 E-value=7.6 Score=38.40 Aligned_cols=194 Identities=10% Similarity=0.068 Sum_probs=111.5
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHH----HHHcCCcEEE-ECchhhhhhcc---CCCC----ccCCHHHHHHHHHHHHccc
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHG---HDTT----LPITLEEMLVHCRAVARGA 151 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAri----ae~AG~Dail-vGdSla~~~lG---~~dt----~~vtl~eml~h~raV~Ra~ 151 (293)
|+.-++++--+-..|+|++.+++. ||+...++|+ +..+.. ..+| +++- .-....++...++..++..
T Consensus 13 L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~ 91 (350)
T PRK09197 13 FDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGA-AFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHY 91 (350)
T ss_pred HHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhH-hhcCCccccccchhhhhhhHHHHHHHHHHHHHHC
Confidence 444556677788999999999874 6778999998 433332 2223 3320 0112223667778888888
Q ss_pred CCCeEEeeCCCC-C--CCCCHHHHHHHHHHHHH---HhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEecccc
Q 022677 152 KRPLLVGDLPFG-T--YESSTNQAVDTAVRILK---EGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLT 218 (293)
Q Consensus 152 ~~p~vvaDmpfG-s--y~~s~e~av~~A~rl~k---eaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLt 218 (293)
+.| |+.-+.-| + | .-..++++...+.++ +.|..+|.+-+... ....+++..-..||.|=|=+|-+
T Consensus 92 ~VP-ValHLDHg~~~~~-~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~I 169 (350)
T PRK09197 92 GVP-VILHTDHCAKKLL-PWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVT 169 (350)
T ss_pred CCC-EEEECCCCCCcch-HHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 888 66666654 2 2 123445444333333 23599999976532 13345666678899998888755
Q ss_pred ceeeeec--CCc--ccccCCHHHHHHHHHHHHHHHHcCC----cEEE----------ecCCC---HHHHHHHHHhc----
Q 022677 219 PQAISVL--GGF--RPQGKNVTSAVKVVETALALQEVGC----FSVV----------LECVP---PPVAAAATSAL---- 273 (293)
Q Consensus 219 Pq~~~~l--gGf--~vqGrt~~~a~e~l~rA~a~eeAGA----~~Iv----------lE~vp---~e~a~~It~~l---- 273 (293)
+..+... .+. ...=-+.++|.+.++ +-|+ |+|= -..-| -+..+.|.+.+
T Consensus 170 gg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~------~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~ 243 (350)
T PRK09197 170 GGEEDGVDNSHEDNSKLYTQPEDVLYAYE------ALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKF 243 (350)
T ss_pred CCCcCCccccccccccccCCHHHHHHHHH------HhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhh
Confidence 4332111 000 000123344444443 3465 6553 22223 48899999999
Q ss_pred -----CCCEEEeCCCCCCC
Q 022677 274 -----QIPTIGIGAGPFCS 287 (293)
Q Consensus 274 -----~iPtIGIGaG~~~d 287 (293)
++|+. +-+|++.+
T Consensus 244 ~~~~~~vPLV-LHGgSGip 261 (350)
T PRK09197 244 GLPAKPFDFV-FHGGSGST 261 (350)
T ss_pred CCCCCCCCEE-EeCCCCCC
Confidence 79965 55565543
No 251
>PLN02858 fructose-bisphosphate aldolase
Probab=92.60 E-value=15 Score=42.36 Aligned_cols=185 Identities=15% Similarity=0.198 Sum_probs=113.8
Q ss_pred CcCCHHHHHHhhh-CCCcEEEEecCCHHHHHH----HHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc
Q 022677 77 QRVTLTHLRQKHK-NGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (293)
Q Consensus 77 ~~~t~~~Lr~l~~-~g~pi~m~tayD~~SAri----ae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~ 151 (293)
.|+|++++.+.-+ ++--+-..|+||..+++. ||+.+.++|+--.....-..| ++ +...++..++..
T Consensus 1098 ~~v~~~~~l~~A~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~--------~~-~~~~~~~~a~~~ 1168 (1378)
T PLN02858 1098 ARSSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGG--------IP-LVSCCIAAAEQA 1168 (1378)
T ss_pred CCccHHHHHHHHHHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcC--------HH-HHHHHHHHHHHC
Confidence 4688887766544 455788899999999874 678899999843222221222 34 555566667777
Q ss_pred CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceeeee
Q 022677 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAISV 224 (293)
Q Consensus 152 ~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~~~ 224 (293)
+.| |+.-+.-| + +.|.. .+.+ +.|.++|.+-+... ...++++..-..||.|=+=+|-+.-.+..
T Consensus 1169 ~vp-V~lHLDHg-~--~~~~i----~~ai-~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~ 1239 (1378)
T PLN02858 1169 SVP-ITVHFDHG-T--SKHEL----LEAL-ELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDG 1239 (1378)
T ss_pred CCC-EEEECCCC-C--CHHHH----HHHH-HhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCC
Confidence 788 77777764 2 44444 3456 48999999976532 23356666678899998877754432211
Q ss_pred c--CCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecC----------CC---HHHHHHHHHhc---CCCEEEeCCCCCC
Q 022677 225 L--GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC----------VP---PPVAAAATSAL---QIPTIGIGAGPFC 286 (293)
Q Consensus 225 l--gGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~----------vp---~e~a~~It~~l---~iPtIGIGaG~~~ 286 (293)
. ......-.+.++|.+.++ +-|+|++=+=- -| -++.+.|.+.+ ++|+. +-.|+++
T Consensus 1240 ~~~~~~~~~~T~p~~a~~Fv~------~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLV-lHGgSG~ 1312 (1378)
T PLN02858 1240 LTVEEYEAKLTDVDQAKEFID------ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLV-LHGASGL 1312 (1378)
T ss_pred ccccccccCCCCHHHHHHHHH------hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEE-EeCCCCC
Confidence 0 000011122233433333 35899875321 23 47999999999 79965 5556654
No 252
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=92.53 E-value=4.3 Score=36.59 Aligned_cols=124 Identities=23% Similarity=0.207 Sum_probs=69.2
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHH---HHHcccCCCeEEeeCCCCCCC----CCHHHHHHHHH
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCR---AVARGAKRPLLVGDLPFGTYE----SSTNQAVDTAV 177 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~r---aV~Ra~~~p~vvaDmpfGsy~----~s~e~av~~A~ 177 (293)
...+-++|+|.+.+-...+ . .+.++++..++ ..++..+.|+++=+...| .+ .+. +.++.+.
T Consensus 82 v~~a~~~Ga~~v~~~~~~~-----~-----~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g-~~~~~~~~~-~~i~~~~ 149 (235)
T cd00958 82 VEDAVRLGADAVGVTVYVG-----S-----EEEREMLEELARVAAEAHKYGLPLIAWMYPRG-PAVKNEKDP-DLIAYAA 149 (235)
T ss_pred HHHHHHCCCCEEEEEEecC-----C-----chHHHHHHHHHHHHHHHHHcCCCEEEEEeccC-CcccCccCH-HHHHHHH
Confidence 4445578999875433322 1 12344544444 444567788666332222 21 233 3444434
Q ss_pred HHHHHhCCCEEEeCCCCCCcHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEE
Q 022677 178 RILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (293)
Q Consensus 178 rl~keaGa~gVkiEgg~~~~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~I 256 (293)
+...+.|+|-||+.... -....+.+++. .+||+ ..|| -+....++.+++++.+.++||+++
T Consensus 150 ~~a~~~GaD~Ik~~~~~--~~~~~~~i~~~~~~pvv-----------~~GG-----~~~~~~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 150 RIGAELGADIVKTKYTG--DAESFKEVVEGCPVPVV-----------IAGG-----PKKDSEEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred HHHHHHCCCEEEecCCC--CHHHHHHHHhcCCCCEE-----------EeCC-----CCCCCHHHHHHHHHHHHHcCCcEE
Confidence 55557999999996322 13445666643 35543 1232 122244567888999999999998
Q ss_pred Ee
Q 022677 257 VL 258 (293)
Q Consensus 257 vl 258 (293)
.+
T Consensus 212 ~v 213 (235)
T cd00958 212 AV 213 (235)
T ss_pred Ee
Confidence 75
No 253
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=92.53 E-value=1.4 Score=42.63 Aligned_cols=44 Identities=32% Similarity=0.287 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEe-----c-CCC-----------HHHHHHHHHhcCCCEEEeC
Q 022677 238 AVKVVETALALQEVGCFSVVL-----E-CVP-----------PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 238 a~e~l~rA~a~eeAGA~~Ivl-----E-~vp-----------~e~a~~It~~l~iPtIGIG 281 (293)
.++.++-++.++++|+|.|-+ | -++ .+.++.|.+.+++|+++-|
T Consensus 223 ~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G 283 (353)
T cd02930 223 WEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASN 283 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcC
Confidence 356788889999999999987 2 111 3456889999999998654
No 254
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=92.52 E-value=2.1 Score=41.59 Aligned_cols=98 Identities=24% Similarity=0.337 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhCCCEEEeCCCC---------C------------------CcHHHHHHHHHc-CCcEEEeccccceeeee
Q 022677 173 VDTAVRILKEGGMDAIKLEGGS---------P------------------SRITAARGIVEA-GIAVMGHVGLTPQAISV 224 (293)
Q Consensus 173 v~~A~rl~keaGa~gVkiEgg~---------~------------------~~~~~ikal~~~-GIpV~GHiGLtPq~~~~ 224 (293)
++.|.+ .+++|.|+|-|-++. . ...++++++.++ ..||.- .+.+.
T Consensus 145 ~~aA~~-a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~v--Ris~~---- 217 (337)
T PRK13523 145 KQAAVR-AKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFV--RISAS---- 217 (337)
T ss_pred HHHHHH-HHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEE--Eeccc----
Confidence 344444 457999999998651 0 122456666653 334332 12221
Q ss_pred cCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecC----------CC---HHHHHHHHHhcCCCEEEeCC
Q 022677 225 LGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC----------VP---PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 225 lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~----------vp---~e~a~~It~~l~iPtIGIGa 282 (293)
+|..-|.+. ++.++-++.++++|+|.|-+-+ .+ .+.++.|.+.+++|+|+.|.
T Consensus 218 --d~~~~G~~~---~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~ 283 (337)
T PRK13523 218 --DYHPGGLTV---QDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGL 283 (337)
T ss_pred --ccCCCCCCH---HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCC
Confidence 222224553 5667778888999999997632 12 36788999999999987653
No 255
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=92.47 E-value=7.5 Score=36.31 Aligned_cols=110 Identities=21% Similarity=0.170 Sum_probs=68.0
Q ss_pred cEEEEecCC--H----HHHHHHHHcCCcEEEECchhh-------------hhhccCCCCccCCHHHHHHHHHHHHcc-cC
Q 022677 93 PITMVTAYD--Y----PSAVHLDSAGIDICLVGDSAA-------------MVVHGHDTTLPITLEEMLVHCRAVARG-AK 152 (293)
Q Consensus 93 pi~m~tayD--~----~SAriae~AG~DailvGdSla-------------~~~lG~~dt~~vtl~eml~h~raV~Ra-~~ 152 (293)
.+.-+|+=| . --++..+++|+|+|=.|--.+ -.+| ...++++..+..++.|++- .+
T Consensus 12 li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al----~~G~~~~~~~~~v~~ir~~~~~ 87 (256)
T TIGR00262 12 FIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRAL----RAGMTPEKCFELLKKVRQKHPN 87 (256)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHH----HcCCCHHHHHHHHHHHHhcCCC
Confidence 455666644 2 225566788999996653210 0111 3457899999999999875 67
Q ss_pred CCeEEeeCCCCCCCCCH--HHHHHHHHHHHHHhCCCEEEeCCCC-CCcHHHHHHHHHcCCcEE
Q 022677 153 RPLLVGDLPFGTYESST--NQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (293)
Q Consensus 153 ~p~vvaDmpfGsy~~s~--e~av~~A~rl~keaGa~gVkiEgg~-~~~~~~ikal~~~GIpV~ 212 (293)
.|++ =| +| .|+ ...++.-.+.++++|++++-+=|=. ++..+.++++.+.|+..+
T Consensus 88 ~plv--~m---~Y-~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 88 IPIG--LL---TY-YNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPI 144 (256)
T ss_pred CCEE--EE---Ee-ccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEE
Confidence 7743 22 34 244 1122222344568999999998753 234567788889998754
No 256
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=92.45 E-value=5.1 Score=38.92 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHH
Q 022677 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (293)
Q Consensus 100 yD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl 179 (293)
++.-.-+.+.++|+|.+-+.++..- .+....|++.++. .+.- +.+.+.+ ++..++++.++.+.++
T Consensus 88 ~~~~dl~~a~~~gvd~iri~~~~~e------------~d~~~~~i~~ak~-~G~~-v~~~l~~-s~~~~~e~l~~~a~~~ 152 (333)
T TIGR03217 88 GTVHDLKAAYDAGARTVRVATHCTE------------ADVSEQHIGMARE-LGMD-TVGFLMM-SHMTPPEKLAEQAKLM 152 (333)
T ss_pred cCHHHHHHHHHCCCCEEEEEeccch------------HHHHHHHHHHHHH-cCCe-EEEEEEc-ccCCCHHHHHHHHHHH
Confidence 4666678888999999987653211 1344566666543 3322 4455544 4556888888887665
Q ss_pred HHHhCCCEEEeCCCCC-----CcHHHHHHHHHc-C--CcEEEe
Q 022677 180 LKEGGMDAIKLEGGSP-----SRITAARGIVEA-G--IAVMGH 214 (293)
Q Consensus 180 ~keaGa~gVkiEgg~~-----~~~~~ikal~~~-G--IpV~GH 214 (293)
++.|++.|.|-|... ....+++++.+. + ||+--|
T Consensus 153 -~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 153 -ESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred -HhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 479999999999632 233455556543 3 666555
No 257
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.42 E-value=7.5 Score=36.84 Aligned_cols=133 Identities=17% Similarity=0.149 Sum_probs=81.5
Q ss_pred hhhccCCCCccCCHHHHHHHHHHHHcc---cCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh--CCCEEEeCCCC----
Q 022677 124 MVVHGHDTTLPITLEEMLVHCRAVARG---AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG--GMDAIKLEGGS---- 194 (293)
Q Consensus 124 ~~~lG~~dt~~vtl~eml~h~raV~Ra---~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea--Ga~gVkiEgg~---- 194 (293)
..+.|+++- .+|.++.+.+...+. .+.| +++.+- | . +++.++.+.++.+.. |+|+|-|-=+.
T Consensus 63 ~N~~G~~n~---g~~~~~~~i~~~~~~~~~~~~p-vivsi~-g---~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~ 133 (294)
T cd04741 63 INSLGLPNL---GLDYYLEYIRTISDGLPGSAKP-FFISVT-G---S-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP 133 (294)
T ss_pred cccccCCCc---CHHHHHHHHHHHhhhccccCCe-EEEECC-C---C-HHHHHHHHHHHHhhccccccEEEEECCCCCCC
Confidence 356677774 588888888876553 3456 666662 2 2 688888887776434 78988664321
Q ss_pred ---------CCcHHHHHHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHc--CCcEEEe----
Q 022677 195 ---------PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEV--GCFSVVL---- 258 (293)
Q Consensus 195 ---------~~~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeA--GA~~Ivl---- 258 (293)
+...++++++.+. .|||.-= |.|. + + ..++.+-|+.++++ |+++|.+
T Consensus 134 ~~~~~~~~~~~~~~i~~~v~~~~~iPv~vK--l~p~-------~-----~---~~~~~~~a~~l~~~~~G~~gi~~~Nt~ 196 (294)
T cd04741 134 GKPPPAYDFDATLEYLTAVKAAYSIPVGVK--TPPY-------T-----D---PAQFDTLAEALNAFACPISFITATNTL 196 (294)
T ss_pred CcccccCCHHHHHHHHHHHHHhcCCCEEEE--eCCC-------C-----C---HHHHHHHHHHHhccccCCcEEEEEccC
Confidence 1133455555543 5777633 2221 1 1 23456777788888 9999883
Q ss_pred ------c---CCC--------------------HHHHHHHHHhcC--CCEEEeCC
Q 022677 259 ------E---CVP--------------------PPVAAAATSALQ--IPTIGIGA 282 (293)
Q Consensus 259 ------E---~vp--------------------~e~a~~It~~l~--iPtIGIGa 282 (293)
. .-| -+.++.+.++++ +|+||.|.
T Consensus 197 ~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GG 251 (294)
T cd04741 197 GNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGG 251 (294)
T ss_pred CccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCC
Confidence 1 000 045577778884 99998874
No 258
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=92.38 E-value=4.2 Score=37.87 Aligned_cols=125 Identities=23% Similarity=0.194 Sum_probs=68.6
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHH---HHHcccCCCeEEeeCCCCCC---CCCHHHHHHHHHH
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCR---AVARGAKRPLLVGDLPFGTY---ESSTNQAVDTAVR 178 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~r---aV~Ra~~~p~vvaDmpfGsy---~~s~e~av~~A~r 178 (293)
++-+-+.|+|.+-+-.-.+. ...++++..++ ..|+..+.|+++-+.|.|.. ..++++. ..+.+
T Consensus 99 ve~A~~~Gad~v~~~~~~g~----------~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i-~~a~~ 167 (267)
T PRK07226 99 VEEAIKLGADAVSVHVNVGS----------ETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVV-AHAAR 167 (267)
T ss_pred HHHHHHcCCCEEEEEEecCC----------hhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHH-HHHHH
Confidence 44555678887753221111 11334444444 44455678877754333311 0144443 34445
Q ss_pred HHHHhCCCEEEeCCCCCCcHHHHHHHHH-cCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEE
Q 022677 179 ILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (293)
Q Consensus 179 l~keaGa~gVkiEgg~~~~~~~ikal~~-~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~Iv 257 (293)
...+.|||-||..-.. -....+.+++ ..+||+. .|| -+.+..+++++......+|||+++-
T Consensus 168 ~a~e~GAD~vKt~~~~--~~~~l~~~~~~~~ipV~a-----------~GG-----i~~~~~~~~l~~v~~~~~aGA~Gis 229 (267)
T PRK07226 168 VAAELGADIVKTNYTG--DPESFREVVEGCPVPVVI-----------AGG-----PKTDTDREFLEMVRDAMEAGAAGVA 229 (267)
T ss_pred HHHHHCCCEEeeCCCC--CHHHHHHHHHhCCCCEEE-----------EeC-----CCCCCHHHHHHHHHHHHHcCCcEEe
Confidence 5558999999997321 1345566665 3678763 343 2222334566677677889999875
Q ss_pred e
Q 022677 258 L 258 (293)
Q Consensus 258 l 258 (293)
+
T Consensus 230 ~ 230 (267)
T PRK07226 230 V 230 (267)
T ss_pred h
Confidence 3
No 259
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=92.29 E-value=1.5 Score=43.30 Aligned_cols=102 Identities=23% Similarity=0.359 Sum_probs=65.6
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhc-cCCCCccCCHHHHHHHHHHHHcccCCCeEEe
Q 022677 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVH-GHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~l-G~~dt~~vtl~eml~h~raV~Ra~~~p~vva 158 (293)
+++.|++.+. .-+|..=|+=++-.|+-+.++|+|+|.||=.-+..+- ---.+..++.---++.|...++....| |++
T Consensus 139 ~ik~ik~~~~-~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~-iIA 216 (352)
T PF00478_consen 139 MIKKIKKKFP-DVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVP-IIA 216 (352)
T ss_dssp HHHHHHHHST-TSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSE-EEE
T ss_pred HHHHHHHhCC-CceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCc-eee
Confidence 4555655553 4577777999999999999999999998854444321 000012234445677888888877777 999
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
| |+- .+.-+.+ +.+ .+|||+|.+=.
T Consensus 217 D---GGi-~~sGDi~----KAl-a~GAd~VMlG~ 241 (352)
T PF00478_consen 217 D---GGI-RTSGDIV----KAL-AAGADAVMLGS 241 (352)
T ss_dssp E---SS--SSHHHHH----HHH-HTT-SEEEEST
T ss_pred c---CCc-Cccccee----eee-eecccceeech
Confidence 9 555 3456663 456 58999999843
No 260
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=92.26 E-value=5.3 Score=35.91 Aligned_cols=153 Identities=20% Similarity=0.233 Sum_probs=89.2
Q ss_pred HHHcCCcEE-EECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE-ee--CCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 108 LDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GD--LPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 108 ae~AG~Dai-lvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv-aD--mpfGsy~~s~e~av~~A~rl~kea 183 (293)
++..|+|+| +==|.+.. .+.+......+.+++..+.|+|+ .- -+=|.|..+.++-++--.+++ +.
T Consensus 19 ~~~~~~D~vElRlD~l~~----------~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~-~~ 87 (224)
T PF01487_consen 19 AESSGADAVELRLDYLEN----------DSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLELLERAI-RL 87 (224)
T ss_dssp HHHTTTSEEEEEGGGSTT----------TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHHHHHHH-HH
T ss_pred HHhcCCCEEEEEeccccc----------cChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHHHHHHH-Hc
Confidence 344499999 42255432 56777778888888878888665 22 223556556666655555555 57
Q ss_pred CCCEEEeCCCC-CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC
Q 022677 184 GMDAIKLEGGS-PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP 262 (293)
Q Consensus 184 Ga~gVkiEgg~-~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp 262 (293)
|++.|-||-.. .............+.++.+.. |.+ .+|. ..+++.+.....++.|||++=+=+.+
T Consensus 88 ~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~-------H~f------~~tp-~~~~l~~~~~~~~~~gadivKia~~~ 153 (224)
T PF01487_consen 88 GPDYIDIELDLFPDDLKSRLAARKGGTKIILSY-------HDF------EKTP-SWEELIELLEEMQELGADIVKIAVMA 153 (224)
T ss_dssp TSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEE-------EES------S----THHHHHHHHHHHHHTT-SEEEEEEE-
T ss_pred CCCEEEEEcccchhHHHHHHHHhhCCCeEEEEe-------ccC------CCCC-CHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 89999999652 111112455678888888651 111 1222 12336666666779999987665544
Q ss_pred ---HHH------HHHHHHhcCCCEEEeCCCCC
Q 022677 263 ---PPV------AAAATSALQIPTIGIGAGPF 285 (293)
Q Consensus 263 ---~e~------a~~It~~l~iPtIGIGaG~~ 285 (293)
.+. ...+.+..+.|+|+|+=|+.
T Consensus 154 ~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~ 185 (224)
T PF01487_consen 154 NSPEDVLRLLRFTKEFREEPDIPVIAISMGEL 185 (224)
T ss_dssp SSHHHHHHHHHHHHHHHHHTSSEEEEEEETGG
T ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEEEcCCC
Confidence 222 22233334699999998874
No 261
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.23 E-value=1.7 Score=41.71 Aligned_cols=99 Identities=22% Similarity=0.245 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCC---------C------------------CcHHHHHHHHHc---CCcEEEecccccee
Q 022677 172 AVDTAVRILKEGGMDAIKLEGGS---------P------------------SRITAARGIVEA---GIAVMGHVGLTPQA 221 (293)
Q Consensus 172 av~~A~rl~keaGa~gVkiEgg~---------~------------------~~~~~ikal~~~---GIpV~GHiGLtPq~ 221 (293)
-++.|.+. +++|.|+|.|-++. . ...++++++.++ ++++.-- +++.
T Consensus 151 ~~~aA~ra-~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vr--is~~- 226 (338)
T cd04733 151 FAHAARLA-QEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIK--LNSA- 226 (338)
T ss_pred HHHHHHHH-HHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEE--EcHH-
Confidence 44555554 47999999987651 0 122456666642 2444321 2221
Q ss_pred eeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec------CCC---------------HHHHHHHHHhcCCCEEEe
Q 022677 222 ISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE------CVP---------------PPVAAAATSALQIPTIGI 280 (293)
Q Consensus 222 ~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE------~vp---------------~e~a~~It~~l~iPtIGI 280 (293)
.|...|-+. ++.++-++.++++|.|.|-+- ... .+.++.|.+.+++|+++-
T Consensus 227 -----~~~~~g~~~---eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~ 298 (338)
T cd04733 227 -----DFQRGGFTE---EDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVT 298 (338)
T ss_pred -----HcCCCCCCH---HHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEe
Confidence 111234443 467888999999999988741 110 267788999999999976
Q ss_pred CC
Q 022677 281 GA 282 (293)
Q Consensus 281 Ga 282 (293)
|.
T Consensus 299 G~ 300 (338)
T cd04733 299 GG 300 (338)
T ss_pred CC
Confidence 53
No 262
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=92.10 E-value=4.1 Score=41.29 Aligned_cols=95 Identities=20% Similarity=0.163 Sum_probs=57.5
Q ss_pred HHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCe-EEeeCCCCCCCCCHHHHHHHHHHHHHHhC
Q 022677 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL-LVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (293)
Q Consensus 106 riae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~-vvaDmpfGsy~~s~e~av~~A~rl~keaG 184 (293)
+.+-++|+|.+-+-|++.-.. .+.+++ +.+++ .+..+ +.....++.+ .+++..++.+.++. +.|
T Consensus 103 ~~A~~~Gvd~irif~~lnd~~---------n~~~~v---~~ak~-~G~~v~~~i~~t~~p~-~~~~~~~~~a~~l~-~~G 167 (448)
T PRK12331 103 QKSVENGIDIIRIFDALNDVR---------NLETAV---KATKK-AGGHAQVAISYTTSPV-HTIDYFVKLAKEMQ-EMG 167 (448)
T ss_pred HHHHHCCCCEEEEEEecCcHH---------HHHHHH---HHHHH-cCCeEEEEEEeecCCC-CCHHHHHHHHHHHH-HcC
Confidence 456678999998888775431 133433 33332 22211 1122222334 57888888888876 799
Q ss_pred CCEEEeCCCCC-----CcHHHHHHHHH-cCCcEEEec
Q 022677 185 MDAIKLEGGSP-----SRITAARGIVE-AGIAVMGHV 215 (293)
Q Consensus 185 a~gVkiEgg~~-----~~~~~ikal~~-~GIpV~GHi 215 (293)
++.|.|-|-.. .+..++++|.+ .++|+.-|.
T Consensus 168 ad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~ 204 (448)
T PRK12331 168 ADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHT 204 (448)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 99999999532 23355666654 368887774
No 263
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=92.09 E-value=1.7 Score=37.84 Aligned_cols=123 Identities=22% Similarity=0.258 Sum_probs=71.6
Q ss_pred HcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 022677 110 SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (293)
Q Consensus 110 ~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVk 189 (293)
++|++.+..-+ ++...-.+.+.+.....+++..+.++++-| + .+ +..+.|++||+
T Consensus 23 ~~gv~~v~lR~---------k~~~~~~~~~~a~~l~~~~~~~~~~liin~-----~---~~--------la~~~~~dGvH 77 (180)
T PF02581_consen 23 AAGVDLVQLRE---------KDLSDEELLELARRLAELCQKYGVPLIIND-----R---VD--------LALELGADGVH 77 (180)
T ss_dssp HTT-SEEEEE----------SSS-HHHHHHHHHHHHHHHHHTTGCEEEES---------HH--------HHHHCT-SEEE
T ss_pred HCCCcEEEEcC---------CCCCccHHHHHHHHHHHHhhcceEEEEecC-----C---HH--------HHHhcCCCEEE
Confidence 45788776542 222233444555666667777777877766 1 22 33468999999
Q ss_pred eCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC--------
Q 022677 190 LEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-------- 261 (293)
Q Consensus 190 iEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v-------- 261 (293)
+......... .+.+.. ..+..|.+....+ .++...+.|+|-+++-.+
T Consensus 78 l~~~~~~~~~-~r~~~~--------------------~~~~ig~S~h~~~----e~~~a~~~g~dYv~~gpvf~T~sk~~ 132 (180)
T PF02581_consen 78 LGQSDLPPAE-ARKLLG--------------------PDKIIGASCHSLE----EAREAEELGADYVFLGPVFPTSSKPG 132 (180)
T ss_dssp EBTTSSSHHH-HHHHHT--------------------TTSEEEEEESSHH----HHHHHHHCTTSEEEEETSS--SSSSS
T ss_pred ecccccchHH-hhhhcc--------------------cceEEEeecCcHH----HHHHhhhcCCCEEEECCccCCCCCcc
Confidence 9765422222 222211 1112232222222 355666999999998766
Q ss_pred -C---HHHHHHHHHhcCCCEEEeCC
Q 022677 262 -P---PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 262 -p---~e~a~~It~~l~iPtIGIGa 282 (293)
+ -+..+.+.+..++|++.||.
T Consensus 133 ~~~~g~~~l~~~~~~~~~pv~AlGG 157 (180)
T PF02581_consen 133 APPLGLDGLREIARASPIPVYALGG 157 (180)
T ss_dssp -TTCHHHHHHHHHHHTSSCEEEESS
T ss_pred ccccCHHHHHHHHHhCCCCEEEEcC
Confidence 2 36778899999999999996
No 264
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=92.09 E-value=1.4 Score=43.38 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=65.1
Q ss_pred cCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc--CCC
Q 022677 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA--KRP 154 (293)
Q Consensus 78 ~~t~~~Lr~l~~-~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~--~~p 154 (293)
.+|.++|..+.+ -+.||++=..-+.-.|+.+.++|+|.|.+....+... |..+.+++.+. .|+++. +.|
T Consensus 207 ~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~l----d~~~~~~~~l~----~i~~a~~~~i~ 278 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQL----DGGPASFDSLP----EIAEAVNHRVP 278 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccC----CCCchHHHHHH----HHHHHhCCCCe
Confidence 467777776654 3568887777788899999999999998866554332 44555554433 333333 355
Q ss_pred eEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 155 ~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
|++| |+. .+..+++ +.+ ..||++|.+-
T Consensus 279 -vi~d---GGI-r~g~Di~----kaL-alGA~~V~iG 305 (351)
T cd04737 279 -IIFD---SGV-RRGEHVF----KAL-ASGADAVAVG 305 (351)
T ss_pred -EEEE---CCC-CCHHHHH----HHH-HcCCCEEEEC
Confidence 8888 666 4667774 556 4899999985
No 265
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=92.09 E-value=2 Score=42.33 Aligned_cols=120 Identities=26% Similarity=0.427 Sum_probs=69.8
Q ss_pred EEecCC--HHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE-eeCCCCCCCCCHHHH
Q 022677 96 MVTAYD--YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQA 172 (293)
Q Consensus 96 m~tayD--~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv-aDmpfGsy~~s~e~a 172 (293)
-++..| +--+..+-++|+|+|.+ |+. +|+. +.++..++.|++.-+..+|+ ++. .+.|.+
T Consensus 102 avg~~~~~~er~~~L~~agvD~ivI-D~a----~g~s-------~~~~~~ik~ik~~~~~~~viaGNV------~T~e~a 163 (352)
T PF00478_consen 102 AVGTRDDDFERAEALVEAGVDVIVI-DSA----HGHS-------EHVIDMIKKIKKKFPDVPVIAGNV------VTYEGA 163 (352)
T ss_dssp EEESSTCHHHHHHHHHHTT-SEEEE-E-S----STTS-------HHHHHHHHHHHHHSTTSEEEEEEE-------SHHHH
T ss_pred EecCCHHHHHHHHHHHHcCCCEEEc-ccc----CccH-------HHHHHHHHHHHHhCCCceEEeccc------CCHHHH
Confidence 345565 66777777899999998 532 4433 34567788888887744455 543 344555
Q ss_pred HHHHHHHHHHhCCCEEEeCCCCC--------------C---cHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCH
Q 022677 173 VDTAVRILKEGGMDAIKLEGGSP--------------S---RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNV 235 (293)
Q Consensus 173 v~~A~rl~keaGa~gVkiEgg~~--------------~---~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~ 235 (293)
..|+ ++|||+||+==|.- . +.+..++..+.|+|++. .||.+ +.
T Consensus 164 ----~~L~-~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIA-----------DGGi~----~s 223 (352)
T PF00478_consen 164 ----KDLI-DAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIA-----------DGGIR----TS 223 (352)
T ss_dssp ----HHHH-HTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEE-----------ESS-S----SH
T ss_pred ----HHHH-HcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceee-----------cCCcC----cc
Confidence 4577 69999999963321 0 12334445567888885 45443 33
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecC
Q 022677 236 TSAVKVVETALALQEVGCFSVVLEC 260 (293)
Q Consensus 236 ~~a~e~l~rA~a~eeAGA~~IvlE~ 260 (293)
-+..+ -..+|||++.+=.
T Consensus 224 GDi~K-------Ala~GAd~VMlG~ 241 (352)
T PF00478_consen 224 GDIVK-------ALAAGADAVMLGS 241 (352)
T ss_dssp HHHHH-------HHHTT-SEEEEST
T ss_pred cceee-------eeeecccceeech
Confidence 23322 2358999987643
No 266
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=92.03 E-value=7 Score=36.61 Aligned_cols=118 Identities=14% Similarity=0.016 Sum_probs=72.5
Q ss_pred HHHHHHhhhCCCcEEEEe-c--CCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 81 LTHLRQKHKNGEPITMVT-A--YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 81 ~~~Lr~l~~~g~pi~m~t-a--yD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
++.+.+..+++.++.++. + .|.---..+.+.|+|.|-+.+.. -.++++...++.++. .+.. +.
T Consensus 61 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~~~------------~~~~~~~~~i~~ak~-~G~~-v~ 126 (266)
T cd07944 61 LRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAFHK------------HEFDEALPLIKAIKE-KGYE-VF 126 (266)
T ss_pred HHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEeccc------------ccHHHHHHHHHHHHH-CCCe-EE
Confidence 334444432244554443 3 24445556678899998776433 157888888777753 2332 55
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHHc-C--CcEEEe
Q 022677 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-G--IAVMGH 214 (293)
Q Consensus 158 aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~~-G--IpV~GH 214 (293)
+.+.+ ++..+++..++.+.++. +.|++.|.|-|-.. ....+++++.++ + +|+--|
T Consensus 127 ~~~~~-a~~~~~~~~~~~~~~~~-~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H 189 (266)
T cd07944 127 FNLMA-ISGYSDEELLELLELVN-EIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFH 189 (266)
T ss_pred EEEEe-ecCCCHHHHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 66665 34468888888877765 79999999999532 233455666543 3 677666
No 267
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=92.01 E-value=2 Score=41.32 Aligned_cols=84 Identities=26% Similarity=0.352 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEe-C---------CCCCC--cHHHHHHH-HHcCCcEEEeccccceeeeecCCcccccC
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKL-E---------GGSPS--RITAARGI-VEAGIAVMGHVGLTPQAISVLGGFRPQGK 233 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVki-E---------gg~~~--~~~~ikal-~~~GIpV~GHiGLtPq~~~~lgGf~vqGr 233 (293)
.|+||| ++-+++||.+|.- | ||..+ .+..|+++ ..-.|||+|.+. . ||
T Consensus 18 ~~~eqa-----~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~k--------i-gh----- 78 (287)
T TIGR00343 18 VNPEQA-----KIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVR--------I-GH----- 78 (287)
T ss_pred CCHHHH-----HHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEee--------c-cH-----
Confidence 578998 6778999999875 3 44321 23344444 355899998743 1 22
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEecC-C--C-HHHHHHHHHhcCCCEE
Q 022677 234 NVTSAVKVVETALALQEVGCFSVVLEC-V--P-PPVAAAATSALQIPTI 278 (293)
Q Consensus 234 t~~~a~e~l~rA~a~eeAGA~~IvlE~-v--p-~e~a~~It~~l~iPtI 278 (293)
+..|+.++++|+|.|= |. + | ++....+.++.++|.+
T Consensus 79 --------~~Ea~~L~~~GvDiID-eTe~lrPade~~~~~K~~f~vpfm 118 (287)
T TIGR00343 79 --------FVEAQILEALGVDYID-ESEVLTPADWTFHIDKKKFKVPFV 118 (287)
T ss_pred --------HHHHHHHHHcCCCEEE-ccCCCCcHHHHHHHHHHHcCCCEE
Confidence 7899999999999993 42 2 4 5888889888899988
No 268
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=92.01 E-value=2.6 Score=39.73 Aligned_cols=161 Identities=25% Similarity=0.329 Sum_probs=82.6
Q ss_pred HcCCcEEEECchhhhh-----hccCCCCccCCHHHHHHHHHHHHcc-cC------CCeEEeeCC-C----------CCCC
Q 022677 110 SAGIDICLVGDSAAMV-----VHGHDTTLPITLEEMLVHCRAVARG-AK------RPLLVGDLP-F----------GTYE 166 (293)
Q Consensus 110 ~AG~DailvGdSla~~-----~lG~~dt~~vtl~eml~h~raV~Ra-~~------~p~vvaDmp-f----------Gsy~ 166 (293)
+||+|+|.+ .+..+. .+|+++. ...++...+-.++|. .. ..+|.++++ + |.|.
T Consensus 52 ~AGAdiI~T-nTy~a~~~~l~~~g~~~~---~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~ga~l~g~~y~~~~~ 127 (305)
T PF02574_consen 52 EAGADIITT-NTYQASRERLKEYGLSDE---EAEELNRAAVELAREAADEYGSGRKVLVAGSIGPYGAYLSGSEYPGDYG 127 (305)
T ss_dssp HHT-SEEEE-C-TT-SHHHHGGGT-GGG---CHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S--------CTTCT
T ss_pred HCCCCeEEe-cCCcCchhhhhhcCCcHH---HHHHHHHHHHHHHHHHHhhccCCCccEEEEEcccccccchhhhcccccc
Confidence 579998886 344443 3455554 355665444444332 22 367778886 3 3566
Q ss_pred CCHHHHHHHH---HHHHHHhCCCEEEeCCCC--CCcHHHHHHHHH-cCCcEEEeccccceeeeecCCcccccCCHHHHHH
Q 022677 167 SSTNQAVDTA---VRILKEGGMDAIKLEGGS--PSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (293)
Q Consensus 167 ~s~e~av~~A---~rl~keaGa~gVkiEgg~--~~~~~~ikal~~-~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e 240 (293)
.+.++..+.= ++.+.++|+|.+-+|--. .+...+++++.+ .+.|+.-.+-+.+. +...-|.+..++.+
T Consensus 128 ~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~~~~~------~~l~~g~~~~~~~~ 201 (305)
T PF02574_consen 128 LSFEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFSCKDS------GRLRDGTSLEDAVQ 201 (305)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-EEEE------ES-TCTTBCTTSHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccchhhh------ccccCCCCHHHHHH
Confidence 6666554433 233447899999999532 234556676766 56665533222111 11123444334444
Q ss_pred HHHHH-HHHHHcCCcEEEecCCC-HHHHHHHH---Hhc-CCCEEEeC
Q 022677 241 VVETA-LALQEVGCFSVVLECVP-PPVAAAAT---SAL-QIPTIGIG 281 (293)
Q Consensus 241 ~l~rA-~a~eeAGA~~IvlE~vp-~e~a~~It---~~l-~iPtIGIG 281 (293)
.++.. ..+ +.|++++=+-|.. +.....+. ... ++|++..-
T Consensus 202 ~~~~~~~~~-~~~~~~iGvNC~~~~~~~~~l~~~~~~~~~~~l~vyP 247 (305)
T PF02574_consen 202 VIDELLRAL-PPGPDAIGVNCTSPPEIMKALLELMSATHDIPLIVYP 247 (305)
T ss_dssp HHHHHHHHH-CTT-SEEEEESSS-HHHHHHHHHHHHHHT-SEEEEE-
T ss_pred HHHHHHHHh-hhhhheEEcCCCCcHHHHhHHHHHHhccCCceEEEec
Confidence 44444 344 7999999999987 33333332 332 68888664
No 269
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=92.00 E-value=5.6 Score=35.51 Aligned_cols=78 Identities=26% Similarity=0.224 Sum_probs=45.0
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~-~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
++.+-+.|+|.+-+-=..+...-| .++++....++|++.. +.|+.+ =+|.+ + .+.+ -+..+.|+..|+
T Consensus 75 ve~A~~~GAdevdvv~~~g~~~~~-------~~~~~~~ei~~v~~~~~g~~lkv-I~e~~-~-l~~~-~i~~a~ria~e~ 143 (203)
T cd00959 75 AREAIADGADEIDMVINIGALKSG-------DYEAVYEEIAAVVEACGGAPLKV-ILETG-L-LTDE-EIIKACEIAIEA 143 (203)
T ss_pred HHHHHHcCCCEEEEeecHHHHhCC-------CHHHHHHHHHHHHHhcCCCeEEE-EEecC-C-CCHH-HHHHHHHHHHHh
Confidence 455667799999542222221111 2355555556666554 355433 35543 3 2444 466667777799
Q ss_pred CCCEEEeCCC
Q 022677 184 GMDAIKLEGG 193 (293)
Q Consensus 184 Ga~gVkiEgg 193 (293)
|||.||..-|
T Consensus 144 GaD~IKTsTG 153 (203)
T cd00959 144 GADFIKTSTG 153 (203)
T ss_pred CCCEEEcCCC
Confidence 9999999854
No 270
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=91.84 E-value=11 Score=35.74 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=72.6
Q ss_pred HHHHhhhCCCcEEE--EecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC
Q 022677 83 HLRQKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (293)
Q Consensus 83 ~Lr~l~~~g~pi~m--~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm 160 (293)
.|+++.++|+|... ++-.+...+.++-.+|||.+++ |. --+.++++++...++++.. .+.+ ..+=.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~i-D~---------EHg~~~~~~l~~~i~a~~~-~g~~-~lVRv 75 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLI-DG---------EHAPNTIQDLYHQLQAIAP-YASQ-PVIRP 75 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEE-cc---------ccCCCCHHHHHHHHHHHHh-cCCC-eEEEC
Confidence 37888888987643 5667888999999999999998 31 1236788888888888754 4444 34555
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHH-HcCCcEEEeccc
Q 022677 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGL 217 (293)
Q Consensus 161 pfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~-~~GIpV~GHiGL 217 (293)
|.+++ ... .|.+ +.||+||.+=- .+...+ .++++ ..--|-.|.=|+
T Consensus 76 p~~~~----~~i----~r~L-D~GA~GIivP~-V~saee-A~~~V~a~rYpP~G~Rg~ 122 (267)
T PRK10128 76 VEGSK----PLI----KQVL-DIGAQTLLIPM-VDTAEQ-ARQVVSATRYPPYGERGV 122 (267)
T ss_pred CCCCH----HHH----HHHh-CCCCCeeEecC-cCCHHH-HHHHHHhcCCCCCCCCCC
Confidence 75433 223 4678 79999998753 332333 34443 333444454443
No 271
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=91.83 E-value=1.5 Score=41.21 Aligned_cols=75 Identities=17% Similarity=0.133 Sum_probs=56.0
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHH-Hh
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK-EG 183 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~k-ea 183 (293)
|+.++++|+|++++-- |--...+-++++.|.+.|+.+++.|+++=|.+ ++..+++.. .++.+ --
T Consensus 87 a~~a~~~Gad~v~~~p---------P~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~--g~~l~~~~l----~~L~~~~p 151 (289)
T cd00951 87 AQAAEKAGADGILLLP---------PYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRA--NAVLTADSL----ARLAERCP 151 (289)
T ss_pred HHHHHHhCCCEEEECC---------CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHH----HHHHhcCC
Confidence 5778899999998731 11233577999999999999999998888854 355677655 45664 25
Q ss_pred CCCEEEeCCCC
Q 022677 184 GMDAIKLEGGS 194 (293)
Q Consensus 184 Ga~gVkiEgg~ 194 (293)
.+.+||-..+.
T Consensus 152 nivgiKds~~d 162 (289)
T cd00951 152 NLVGFKDGVGD 162 (289)
T ss_pred CEEEEEeCCCC
Confidence 78999988664
No 272
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=91.64 E-value=6.7 Score=37.25 Aligned_cols=119 Identities=19% Similarity=0.164 Sum_probs=69.3
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc---CCCeE-----EeeCCC
Q 022677 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPLL-----VGDLPF 162 (293)
Q Consensus 91 g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~---~~p~v-----vaDmpf 162 (293)
+..+.++. ..----..+-++|+|.+-+-++++-... ......+.+|.+...+.+.+.+ +..+. ....|+
T Consensus 72 ~~~~~~l~-~~~~~ie~A~~~g~~~v~i~~~~s~~~~--~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~ 148 (287)
T PRK05692 72 GVTYAALT-PNLKGLEAALAAGADEVAVFASASEAFS--QKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY 148 (287)
T ss_pred CCeEEEEe-cCHHHHHHHHHcCCCEEEEEEecCHHHH--HHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC
Confidence 34455443 3444446666889999865555543210 1112256777665555444432 22211 235677
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHHc-C-CcEEEe
Q 022677 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-G-IAVMGH 214 (293)
Q Consensus 163 Gsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~~-G-IpV~GH 214 (293)
.+. .+++..++.+.++. +.|++.|.|-|-.. ....+++++.+. + +|+--|
T Consensus 149 ~~~-~~~~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H 205 (287)
T PRK05692 149 EGE-VPPEAVADVAERLF-ALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGH 205 (287)
T ss_pred CCC-CCHHHHHHHHHHHH-HcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 654 68888888877766 79999999999642 234556666653 2 566555
No 273
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=91.61 E-value=5.7 Score=41.28 Aligned_cols=164 Identities=21% Similarity=0.302 Sum_probs=97.7
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHH-------HHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQ-------AVDTA 176 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~-------av~~A 176 (293)
.|+.-++.|+|-|.+=|--++ .-| ...-+.|+...+.|++.+..|+-++ |+- .|.|+ +++.+
T Consensus 272 ~a~~y~~~Gadel~~~Di~~~-~~~-----~~~~~~~~~~i~~i~~~~~ip~~vG----GGI-r~~~d~~~~~~~~~e~~ 340 (538)
T PLN02617 272 LAGQYYKDGADEVAFLNITGF-RDF-----PLGDLPMLEVLRRASENVFVPLTVG----GGI-RDFTDANGRYYSSLEVA 340 (538)
T ss_pred HHHHHHHcCCCEEEEEECCCC-cCC-----cccchhHHHHHHHHHhhCCCCEEEc----CCc-cccccccccccchHHHH
Confidence 577778889998853243321 111 2223456778888999888886553 233 23222 45666
Q ss_pred HHHHHHhCCCEEEeCCCC------------CCcHHHHHHHHHc-CCc-EEEeccccceeee------------------e
Q 022677 177 VRILKEGGMDAIKLEGGS------------PSRITAARGIVEA-GIA-VMGHVGLTPQAIS------------------V 224 (293)
Q Consensus 177 ~rl~keaGa~gVkiEgg~------------~~~~~~ikal~~~-GIp-V~GHiGLtPq~~~------------------~ 224 (293)
.+++ ++||+=|-|--.. ..-++.++.+.+. |=. ++ +.+-+.+.. .
T Consensus 341 ~~~l-~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~iv--vsiD~k~~~~~~~~~~~~~~~~~~~~~~ 417 (538)
T PLN02617 341 SEYF-RSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVV--VSIDPRRVYVKDPSDVPFKTVKVTNPGP 417 (538)
T ss_pred HHHH-HcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEE--EEEecCcCcccCccccccccccccccCc
Confidence 7888 6999999884211 0113566666542 211 11 122222100 0
Q ss_pred cCC----ccc--ccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC---------HHHHHHHHHhcCCCEEEeC
Q 022677 225 LGG----FRP--QGKNVTSAVKVVETALALQEVGCFSVVLECVP---------PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 225 lgG----f~v--qGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp---------~e~a~~It~~l~iPtIGIG 281 (293)
.+. |.+ .|-....-.++++.++.+++.||--|++-.+. -++.+.|++.+++|+|.=|
T Consensus 418 ~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasG 489 (538)
T PLN02617 418 NGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASS 489 (538)
T ss_pred CcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEEC
Confidence 011 222 23222233577999999999999999998883 5889999999999999544
No 274
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=91.60 E-value=8.8 Score=36.53 Aligned_cols=114 Identities=18% Similarity=0.277 Sum_probs=74.9
Q ss_pred CCcEEEE--ecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc---CCCeEEeeCCC---
Q 022677 91 GEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPLLVGDLPF--- 162 (293)
Q Consensus 91 g~pi~m~--tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~---~~p~vvaDmpf--- 162 (293)
.-|+.+= -+.|+...+.+=++||+.+..-+| ..+++|.+..++.+++-+ +.+ +-+|+..
T Consensus 74 ~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s------------~~~~~eni~~t~~v~~~a~~~gv~-veaE~ghlG~ 140 (281)
T PRK06806 74 KVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGS------------HLPLEENIQKTKEIVELAKQYGAT-VEAEIGRVGG 140 (281)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCC------------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeeECC
Confidence 4565443 356787887788889999988433 358899998888876643 344 3333211
Q ss_pred --------C-CCCCCHHHHHHHHHHHHHHhCCCEEEeCCC---------CCCcHHHHHHHHHc-CCcEEEec--ccccee
Q 022677 163 --------G-TYESSTNQAVDTAVRILKEGGMDAIKLEGG---------SPSRITAARGIVEA-GIAVMGHV--GLTPQA 221 (293)
Q Consensus 163 --------G-sy~~s~e~av~~A~rl~keaGa~gVkiEgg---------~~~~~~~ikal~~~-GIpV~GHi--GLtPq~ 221 (293)
| +| .+++++ .+++++.|+|.+=+-=| ...-.+.++.+.+. .||++.|= |+++..
T Consensus 141 ~d~~~~~~g~s~-t~~eea----~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~ 215 (281)
T PRK06806 141 SEDGSEDIEMLL-TSTTEA----KRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPED 215 (281)
T ss_pred ccCCccccccee-CCHHHH----HHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHH
Confidence 1 35 578887 45676789999988222 12234566667544 79999997 888854
Q ss_pred e
Q 022677 222 I 222 (293)
Q Consensus 222 ~ 222 (293)
.
T Consensus 216 ~ 216 (281)
T PRK06806 216 F 216 (281)
T ss_pred H
Confidence 4
No 275
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=91.59 E-value=1.8 Score=39.88 Aligned_cols=89 Identities=28% Similarity=0.419 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHH
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~ 246 (293)
.++|+++.-+..++ ++|..+|-|-=-.+...+.|+++++ .++++ .+| -| |.=+ -++++
T Consensus 22 ~~~e~a~~~a~Ali-~gGi~~IEITl~sp~a~e~I~~l~~----~~p~~--------lIG----AG-TVL~----~~q~~ 79 (211)
T COG0800 22 DDVEEALPLAKALI-EGGIPAIEITLRTPAALEAIRALAK----EFPEA--------LIG----AG-TVLN----PEQAR 79 (211)
T ss_pred CCHHHHHHHHHHHH-HcCCCeEEEecCCCCHHHHHHHHHH----hCccc--------EEc----cc-cccC----HHHHH
Confidence 57899999998988 7999998876444445677888876 22121 011 11 1111 23677
Q ss_pred HHHHcCCcEEEecCCCHHHHHHHHHhcCCCEE
Q 022677 247 ALQEVGCFSVVLECVPPPVAAAATSALQIPTI 278 (293)
Q Consensus 247 a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtI 278 (293)
++.+|||+-+|=+++.+|+++.. ..-++|++
T Consensus 80 ~a~~aGa~fiVsP~~~~ev~~~a-~~~~ip~~ 110 (211)
T COG0800 80 QAIAAGAQFIVSPGLNPEVAKAA-NRYGIPYI 110 (211)
T ss_pred HHHHcCCCEEECCCCCHHHHHHH-HhCCCccc
Confidence 88999999999999999997765 45688987
No 276
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=91.57 E-value=15 Score=36.22 Aligned_cols=191 Identities=9% Similarity=0.056 Sum_probs=117.0
Q ss_pred HHHHHhhhCCCcEEEEecCCHHHH----HHHHHcCCcEEEECch-hhhhhcc------CCCCccC-CHHHHHHHHHHHHc
Q 022677 82 THLRQKHKNGEPITMVTAYDYPSA----VHLDSAGIDICLVGDS-AAMVVHG------HDTTLPI-TLEEMLVHCRAVAR 149 (293)
Q Consensus 82 ~~Lr~l~~~g~pi~m~tayD~~SA----riae~AG~DailvGdS-la~~~lG------~~dt~~v-tl~eml~h~raV~R 149 (293)
.-|+.-.+++--+-..|+|+.-++ +.||+.+.++|+--.. ......| .+|+..+ .++.+...++..++
T Consensus 3 ~ll~~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 82 (340)
T cd00453 3 KVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAE 82 (340)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHH
Confidence 345666677778899999999998 4567789999984333 2223333 1233222 26677888899998
Q ss_pred ccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhC-----------CCEEEeCCCCC-------CcHHHHHHHHHcCCcE
Q 022677 150 GAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG-----------MDAIKLEGGSP-------SRITAARGIVEAGIAV 211 (293)
Q Consensus 150 a~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaG-----------a~gVkiEgg~~-------~~~~~ikal~~~GIpV 211 (293)
..+.| |+.-|.-|. ..+.+.. .+.+ ++| .++|.+-+... ....+++.+...||.|
T Consensus 83 ~~~VP-V~lHLDH~~-~~~~e~i----~~ai-~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~V 155 (340)
T cd00453 83 HYGVP-VILHTDHCA-KKLLPWI----DGLL-DAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTL 155 (340)
T ss_pred HCCCC-EEEEcCCCC-CCCHHHH----HHHH-HcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 88888 777777653 2244443 4667 689 99999976542 2335566667889999
Q ss_pred EEeccccceeeeecCCc----ccccCCHHHHHHHHHHHHHHHHcC----CcEEE----------ec---CCCHHHHHHHH
Q 022677 212 MGHVGLTPQAISVLGGF----RPQGKNVTSAVKVVETALALQEVG----CFSVV----------LE---CVPPPVAAAAT 270 (293)
Q Consensus 212 ~GHiGLtPq~~~~lgGf----~vqGrt~~~a~e~l~rA~a~eeAG----A~~Iv----------lE---~vp~e~a~~It 270 (293)
=+=+|-+.-.+...... ...=-+.+++.+.+ ++-| +|+|= -. .+.-++.+.|.
T Consensus 156 EaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv------~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~ 229 (340)
T cd00453 156 EIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAY------TELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQ 229 (340)
T ss_pred EEEEEecCCccCCcccccccccccCCCHHHHHHHH------HHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHH
Confidence 88877554332110000 00011234444444 3456 66543 22 23358889999
Q ss_pred Hhc---------CCCEEEeCCCCCC
Q 022677 271 SAL---------QIPTIGIGAGPFC 286 (293)
Q Consensus 271 ~~l---------~iPtIGIGaG~~~ 286 (293)
+.+ ++|+. +-+|++.
T Consensus 230 ~~~~~~~gl~~~~~pLV-lHGgSG~ 253 (340)
T cd00453 230 EYVSKKHNLPHNSLNFV-FHGGSGS 253 (340)
T ss_pred HHHHhhcccCCCCCceE-EeCCCCC
Confidence 988 78865 5555554
No 277
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.55 E-value=1.6 Score=43.02 Aligned_cols=102 Identities=21% Similarity=0.262 Sum_probs=68.0
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhh-ccCCCCccCCHHHHHHHHHHHHcccCCCeEEe
Q 022677 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVV-HGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~-lG~~dt~~vtl~eml~h~raV~Ra~~~p~vva 158 (293)
.++.+|+.+ .+.+|..=|+-++-.|+-+.++|+|++-||=..+..+ --.-.+..++.=--++.|...++..+.| |++
T Consensus 141 ~ik~ik~~~-P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvp-iIA 218 (346)
T PRK05096 141 FVAKAREAW-PDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQ-IVS 218 (346)
T ss_pred HHHHHHHhC-CCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCC-EEe
Confidence 355555544 2456777789999999999999999998765444432 1222223334445577888888888888 999
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
| |+.. +.-+.+ +.+ .+||++|.+-+
T Consensus 219 D---GGi~-~sGDI~----KAl-aaGAd~VMlGs 243 (346)
T PRK05096 219 D---GGCT-VPGDVA----KAF-GGGADFVMLGG 243 (346)
T ss_pred c---CCcc-cccHHH----HHH-HcCCCEEEeCh
Confidence 9 5553 334442 445 58999999843
No 278
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=91.54 E-value=14 Score=38.17 Aligned_cols=137 Identities=15% Similarity=0.233 Sum_probs=79.1
Q ss_pred HHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEE
Q 022677 109 DSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAI 188 (293)
Q Consensus 109 e~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gV 188 (293)
.++|+|+|=+|-.. |.+ ..+++...++.+.+..+.| |+.|... ++ +++ +.+ ++||+.|
T Consensus 175 ~~~GADIIDIG~~s---------t~p-~~~~v~~~V~~l~~~~~~p-ISIDT~~------~~-v~e---aAL-~aGAdiI 232 (499)
T TIGR00284 175 ERDGADMVALGTGS---------FDD-DPDVVKEKVKTALDALDSP-VIADTPT------LD-ELY---EAL-KAGASGV 232 (499)
T ss_pred HHCCCCEEEECCCc---------CCC-cHHHHHHHHHHHHhhCCCc-EEEeCCC------HH-HHH---HHH-HcCCCEE
Confidence 36799999887322 211 3446788888887766666 8999553 33 333 345 3699999
Q ss_pred EeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec-CCC---HH
Q 022677 189 KLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE-CVP---PP 264 (293)
Q Consensus 189 kiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE-~vp---~e 264 (293)
|==.+. ........+.+.|.+++ ++|.. .+.+.+.+.+....+.++|-.-|++. .+. .+
T Consensus 233 NsVs~~-~~d~~~~l~a~~g~~vV----lm~~~------------~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~~~~~ 295 (499)
T TIGR00284 233 IMPDVE-NAVELASEKKLPEDAFV----VVPGN------------QPTNYEELAKAVKKLRTSGYSKVAADPSLSPPLLG 295 (499)
T ss_pred EECCcc-chhHHHHHHHHcCCeEE----EEcCC------------CCchHHHHHHHHHHHHHCCCCcEEEeCCCCcchHH
Confidence 832221 12344444566788888 44521 11223455666677888999555554 332 22
Q ss_pred HH------HHHHHhcCCCEEEeCCCCC
Q 022677 265 VA------AAATSALQIPTIGIGAGPF 285 (293)
Q Consensus 265 ~a------~~It~~l~iPtIGIGaG~~ 285 (293)
+. +.+.+.++.|++ +|.|+-
T Consensus 296 l~~sL~~l~~~r~~~~~Pil-~GvSNv 321 (499)
T TIGR00284 296 LLESIIRFRRASRLLNVPLV-FGAANV 321 (499)
T ss_pred HHHHHHHHHHHHHhcCCcEE-Eeeccc
Confidence 22 233346789975 444443
No 279
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=91.53 E-value=1.9 Score=43.32 Aligned_cols=69 Identities=23% Similarity=0.514 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcc-cCCCeEEeeCCCCCCCCCHHHHHHHHHH
Q 022677 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG-AKRPLLVGDLPFGTYESSTNQAVDTAVR 178 (293)
Q Consensus 100 yD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra-~~~p~vvaDmpfGsy~~s~e~av~~A~r 178 (293)
.|.--+..+-++|+|+|.+ |+. +|+.. .++...+.|++. .+.| |++ |+- .+.+++ ..
T Consensus 224 ~~~~r~~~L~~aG~d~I~v-d~a----~g~~~-------~~~~~i~~i~~~~~~~~-vi~----G~v-~t~~~a----~~ 281 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVI-DSS----HGHSI-------YVIDSIKEIKKTYPDLD-IIA----GNV-ATAEQA----KA 281 (450)
T ss_pred hHHHHHHHHHHhCCCEEEE-ECC----CCcHh-------HHHHHHHHHHHhCCCCC-EEE----EeC-CCHHHH----HH
Confidence 5667788888899999988 432 34321 234455666555 3455 444 333 567777 45
Q ss_pred HHHHhCCCEEEeC
Q 022677 179 ILKEGGMDAIKLE 191 (293)
Q Consensus 179 l~keaGa~gVkiE 191 (293)
++ ++|||+|++-
T Consensus 282 l~-~aGad~i~vg 293 (450)
T TIGR01302 282 LI-DAGADGLRVG 293 (450)
T ss_pred HH-HhCCCEEEEC
Confidence 66 6999999974
No 280
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.52 E-value=5.9 Score=38.42 Aligned_cols=83 Identities=18% Similarity=0.064 Sum_probs=50.4
Q ss_pred HHHHHHHHcC--CcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC-----CCeEEeeCCCCCCCCCHHHHHHH
Q 022677 103 PSAVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-----RPLLVGDLPFGTYESSTNQAVDT 175 (293)
Q Consensus 103 ~SAriae~AG--~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~-----~p~vvaDmpfGsy~~s~e~av~~ 175 (293)
-.+..+++++ +|+|-+--|.-++- |..+ .-.-+.+.+.+++|++.++ .| |.+=|... .+.++..+.
T Consensus 158 d~~~~~~~~~~~ad~lelN~scP~~~-g~~~--~~~~~~~~eiv~aVr~~~~~~~~~~P-V~vKlsp~---~~~~~~~~i 230 (344)
T PRK05286 158 DYLICLEKLYPYADYFTVNISSPNTP-GLRD--LQYGEALDELLAALKEAQAELHGYVP-LLVKIAPD---LSDEELDDI 230 (344)
T ss_pred HHHHHHHHHHhhCCEEEEEccCCCCC-Cccc--ccCHHHHHHHHHHHHHHHhccccCCc-eEEEeCCC---CCHHHHHHH
Confidence 3456666666 99997544443322 2222 2233455566777877776 67 55666532 345666666
Q ss_pred HHHHHHHhCCCEEEeCCC
Q 022677 176 AVRILKEGGMDAIKLEGG 193 (293)
Q Consensus 176 A~rl~keaGa~gVkiEgg 193 (293)
|..+ +++|||+|.+-+.
T Consensus 231 a~~l-~~~Gadgi~~~nt 247 (344)
T PRK05286 231 ADLA-LEHGIDGVIATNT 247 (344)
T ss_pred HHHH-HHhCCcEEEEeCC
Confidence 6554 4799999999764
No 281
>PRK15063 isocitrate lyase; Provisional
Probab=91.48 E-value=7.3 Score=39.52 Aligned_cols=144 Identities=19% Similarity=0.164 Sum_probs=88.0
Q ss_pred HHHHHHHcCCcEEEECchhhh-hhccCCCCc-cCCHHHHHHHHHHHHccc---CCCeEE---eeCCC-------------
Q 022677 104 SAVHLDSAGIDICLVGDSAAM-VVHGHDTTL-PITLEEMLVHCRAVARGA---KRPLLV---GDLPF------------- 162 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~-~~lG~~dt~-~vtl~eml~h~raV~Ra~---~~p~vv---aDmpf------------- 162 (293)
+.+..+++|+-.|-+-|.+.. ---|+-++- .++.+||+...++++.+. +.|+++ .|-.-
T Consensus 166 ~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD~ 245 (428)
T PRK15063 166 LMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERDR 245 (428)
T ss_pred HHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccccccccccccc
Confidence 367778999999999998753 233666654 899999999999988664 335555 35421
Q ss_pred ----------C--CCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCC----c--EEEeccccceeeee
Q 022677 163 ----------G--TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGI----A--VMGHVGLTPQAISV 224 (293)
Q Consensus 163 ----------G--sy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GI----p--V~GHiGLtPq~~~~ 224 (293)
| -|....+++|+-+.... + |||+|-+|.+... .+.++++++ +| | ++.. +.+|- .+|
T Consensus 246 ~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa-~-GAD~iw~Et~~~d-~ee~~~fa~-~v~~~~P~~~lay-n~sPs-fnW 319 (428)
T PRK15063 246 PFITGERTAEGFYRVKAGIEQAIARGLAYA-P-YADLIWCETSTPD-LEEARRFAE-AIHAKFPGKLLAY-NCSPS-FNW 319 (428)
T ss_pred ccccCCCccccccccccCHHHHHHHHHHHh-c-CCCEEEeCCCCCC-HHHHHHHHH-hhcccCccceeec-CCCCC-ccc
Confidence 1 01135789999887765 6 9999999975433 333555554 23 3 3322 45553 122
Q ss_pred cCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC
Q 022677 225 LGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV 261 (293)
Q Consensus 225 lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v 261 (293)
... -+++. +-.-.+.|.+.|-..+|+...
T Consensus 320 ~~~-----~~~~~---~~~f~~eL~~~Gy~~~~~~la 348 (428)
T PRK15063 320 KKN-----LDDAT---IAKFQRELGAMGYKFQFITLA 348 (428)
T ss_pred ccc-----cCHHH---HHHHHHHHHHcCceEEEechH
Confidence 111 12222 222245667778777776643
No 282
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=91.42 E-value=6 Score=35.55 Aligned_cols=143 Identities=24% Similarity=0.219 Sum_probs=83.4
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
-++.++++|+|.|=+| ++...+-.++.+-...+.+.. .-+.+-... .++.++.+.+.+++.
T Consensus 19 i~~~L~~~Gv~~iEvg---------~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~------~~~~i~~~~~~~~~~ 79 (237)
T PF00682_consen 19 IAKALDEAGVDYIEVG---------FPFASEDDFEQVRRLREALPN----ARLQALCRA------NEEDIERAVEAAKEA 79 (237)
T ss_dssp HHHHHHHHTTSEEEEE---------HCTSSHHHHHHHHHHHHHHHS----SEEEEEEES------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCEEEEc---------ccccCHHHHHHhhhhhhhhcc----cccceeeee------hHHHHHHHHHhhHhc
Confidence 4567889999999998 333333334444333333333 323333221 134455555556689
Q ss_pred CCCEEEeCCCCC-----------------CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHH
Q 022677 184 GMDAIKLEGGSP-----------------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (293)
Q Consensus 184 Ga~gVkiEgg~~-----------------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~ 246 (293)
|++.+.+-.... ...+.++.+.+.|+.|+-.+- . ..++ +.+++++-++
T Consensus 80 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~----~---------~~~~--~~~~~~~~~~ 144 (237)
T PF00682_consen 80 GIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE----D---------ASRT--DPEELLELAE 144 (237)
T ss_dssp TSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET----T---------TGGS--SHHHHHHHHH
T ss_pred cCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc----c---------cccc--cHHHHHHHHH
Confidence 999999887532 133556777899999952211 0 1233 2356777788
Q ss_pred HHHHcCCcEEEec-----CCCH---HHHHHHHHhcCCCEEEe
Q 022677 247 ALQEVGCFSVVLE-----CVPP---PVAAAATSALQIPTIGI 280 (293)
Q Consensus 247 a~eeAGA~~IvlE-----~vp~---e~a~~It~~l~iPtIGI 280 (293)
++.++|++.|.+. +.|. ++.+.+.+.++-.-|++
T Consensus 145 ~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~ 186 (237)
T PF00682_consen 145 ALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGF 186 (237)
T ss_dssp HHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEE
T ss_pred HHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEE
Confidence 8888899999987 2352 56677777776333443
No 283
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=91.23 E-value=12 Score=36.34 Aligned_cols=108 Identities=13% Similarity=0.043 Sum_probs=67.6
Q ss_pred CCcEEEEe---cCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCC
Q 022677 91 GEPITMVT---AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES 167 (293)
Q Consensus 91 g~pi~m~t---ayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~ 167 (293)
+.++.++. -.+.-.-+.+.++|+|.+-+.++..- .+....+++.+++ .+.- +.+.+.. ++..
T Consensus 77 ~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e------------~~~~~~~i~~ak~-~G~~-v~~~l~~-a~~~ 141 (337)
T PRK08195 77 QAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTE------------ADVSEQHIGLARE-LGMD-TVGFLMM-SHMA 141 (337)
T ss_pred CCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecch------------HHHHHHHHHHHHH-CCCe-EEEEEEe-ccCC
Confidence 45665532 23566667788899999877543211 2345666666654 2322 4444444 3446
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHHc---CCcEEEe
Q 022677 168 STNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA---GIAVMGH 214 (293)
Q Consensus 168 s~e~av~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~~---GIpV~GH 214 (293)
++++.++.+.++. +.|++.|.|-|... .+..+++++.++ .||+--|
T Consensus 142 ~~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 142 PPEKLAEQAKLME-SYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred CHHHHHHHHHHHH-hCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 8888888876655 79999999999632 234556666654 5777666
No 284
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=91.13 E-value=3.7 Score=39.81 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEec-C--------CCHHHHHHHHHhcCCCEEEeCC
Q 022677 238 AVKVVETALALQEVGCFSVVLE-C--------VPPPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 238 a~e~l~rA~a~eeAGA~~IvlE-~--------vp~e~a~~It~~l~iPtIGIGa 282 (293)
.++.++-++.++++|+|.|-+- + ...+.++.|.+.+++|+|+-|.
T Consensus 240 ~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 240 EATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECC
Confidence 3567788889999999999883 2 2247788999999999998664
No 285
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=91.09 E-value=2.2 Score=40.59 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=67.0
Q ss_pred CHHHHHHhhhCCCcEEEE-ecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEe
Q 022677 80 TLTHLRQKHKNGEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~-tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vva 158 (293)
|++.=+.|.++| ..|+| +.-|...|+-+|++||.++.--.|-..+-+|..+. +..+.|+...+.| |++
T Consensus 126 tl~Aae~Lv~eG-F~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~---------~~l~~i~e~~~vp-Viv 194 (267)
T CHL00162 126 TLKAAEFLVKKG-FTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNL---------LNLQIIIENAKIP-VII 194 (267)
T ss_pred HHHHHHHHHHCC-CEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCCH---------HHHHHHHHcCCCc-EEE
Confidence 555556676666 46777 55789999999999999998544555556776654 4567777777777 888
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg 193 (293)
|=+.| +++++ .+.| |.|+|||-+--+
T Consensus 195 dAGIg----t~sDa----~~Am-ElGaDgVL~nSa 220 (267)
T CHL00162 195 DAGIG----TPSEA----SQAM-ELGASGVLLNTA 220 (267)
T ss_pred eCCcC----CHHHH----HHHH-HcCCCEEeecce
Confidence 85554 56777 3467 699999987654
No 286
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=91.08 E-value=12 Score=34.20 Aligned_cols=138 Identities=21% Similarity=0.238 Sum_probs=76.1
Q ss_pred HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCC-CeEEee---------CCCCCCCCCHHHHHHHH
Q 022677 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLVGD---------LPFGTYESSTNQAVDTA 176 (293)
Q Consensus 107 iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~-p~vvaD---------mpfGsy~~s~e~av~~A 176 (293)
.+.++|+|++-+=-.. + .+|+..+....+.... -.+.+| +-.-+|..+.++.+.+.
T Consensus 75 ~~~~~gad~itvH~~a----------g----~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~ 140 (230)
T PRK00230 75 ALAKLGVDMVNVHASG----------G----PRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRL 140 (230)
T ss_pred HHHHcCCCEEEEcccC----------C----HHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHH
Confidence 3568899999762111 1 3556555555442111 123333 21124555667788777
Q ss_pred HHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEE
Q 022677 177 VRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (293)
Q Consensus 177 ~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~I 256 (293)
.+..++.|+++++.-... ...+|.+...+. ....+|-+.+|-.. .-.+.+.......++||+.+
T Consensus 141 a~~a~~~g~dgvv~~~~~---~~~ir~~~~~~~------------~~v~pGI~~~g~~~-~dq~~~~~~~~ai~~Gad~i 204 (230)
T PRK00230 141 AKLAQEAGLDGVVCSAQE---AAAIREATGPDF------------LLVTPGIRPAGSDA-GDQKRVMTPAQAIAAGSDYI 204 (230)
T ss_pred HHHHHHcCCeEEEeChHH---HHHHHhhcCCce------------EEEcCCcCCCCCCc-chHHHHhCHHHHHHcCCCEE
Confidence 888788999999986422 233443322111 11233444444221 22344455666668999999
Q ss_pred EecC-----C-CHHHHHHHHHhcC
Q 022677 257 VLEC-----V-PPPVAAAATSALQ 274 (293)
Q Consensus 257 vlE~-----v-p~e~a~~It~~l~ 274 (293)
++=- - |.+.++.|.+++.
T Consensus 205 VvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 205 VVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred EECCcccCCCCHHHHHHHHHHHhh
Confidence 8742 2 3578888887764
No 287
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=91.06 E-value=4.5 Score=39.64 Aligned_cols=95 Identities=24% Similarity=0.346 Sum_probs=60.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC---C---CcHHHH---HHHHHcCCcEEEeccccceeeeecCCcccccC
Q 022677 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---P---SRITAA---RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGK 233 (293)
Q Consensus 163 Gsy~~s~e~av~~A~rl~keaGa~gVkiEgg~---~---~~~~~i---kal~~~GIpV~GHiGLtPq~~~~lgGf~vqGr 233 (293)
|.| |.++|+++|.-.-+-.|-+-||||-=. . .....+ +.|++.|..|+-- -..
T Consensus 145 g~~--ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~y----------------c~~ 206 (326)
T PRK11840 145 GCY--TAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVY----------------CSD 206 (326)
T ss_pred CCC--CHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEE----------------eCC
Confidence 455 899999998444334488999999421 1 122333 4445558777422 111
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEe-c-------CCC-HHHHHHHHHhcCCCEEEeCCC
Q 022677 234 NVTSAVKVVETALALQEVGCFSVVL-E-------CVP-PPVAAAATSALQIPTIGIGAG 283 (293)
Q Consensus 234 t~~~a~e~l~rA~a~eeAGA~~Ivl-E-------~vp-~e~a~~It~~l~iPtIGIGaG 283 (293)
+ +..|++++++||-++.. . ++. ++.++.+.+..++|+| +|||
T Consensus 207 d-------~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVi-vdAG 257 (326)
T PRK11840 207 D-------PIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVL-VDAG 257 (326)
T ss_pred C-------HHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHcCCCcEE-EeCC
Confidence 2 45789999999944443 1 343 6889999999999998 4444
No 288
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=90.98 E-value=1.1 Score=44.19 Aligned_cols=149 Identities=24% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcc-----cCCCeEEeeCCCCCCCCCHHHHHHHHHHHH
Q 022677 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG-----AKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (293)
Q Consensus 106 riae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra-----~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ 180 (293)
+-++++|||++-+. ++=.|-....+.|++. .+.| +++|+=| .| .-| .+.+
T Consensus 38 ~~L~~aGceivRva---------------vp~~~~a~al~~I~~~l~~~g~~iP-lVADIHF-d~----~lA----l~a~ 92 (359)
T PF04551_consen 38 KRLEEAGCEIVRVA---------------VPDMEAAEALKEIKKRLRALGSPIP-LVADIHF-DY----RLA----LEAI 92 (359)
T ss_dssp HHHHHCT-SEEEEE---------------E-SHHHHHHHHHHHHHHHCTT-SS--EEEEEST-TC----HHH----HHHH
T ss_pred HHHHHcCCCEEEEc---------------CCCHHHHHHHHHHHHhhccCCCCCC-eeeecCC-CH----HHH----HHHH
Q ss_pred HHhCCCEEEeC------------CC-CCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccc------cCCHHHH-HH
Q 022677 181 KEGGMDAIKLE------------GG-SPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ------GKNVTSA-VK 240 (293)
Q Consensus 181 keaGa~gVkiE------------gg-~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vq------Grt~~~a-~e 240 (293)
+. ++.|.|- |. .+...+++++..+.|||. |.-...|-.-. |.|.+.. +.
T Consensus 93 -~~-v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipI---------RIGvN~GSL~~~~~~ky~~t~~amves 161 (359)
T PF04551_consen 93 -EA-VDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPI---------RIGVNSGSLEKDILEKYGPTPEAMVES 161 (359)
T ss_dssp -HC--SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EE---------EEEEEGGGS-HHHHHHHCHHHHHHHHH
T ss_pred -HH-hCeEEECCCcccccccccccchHHHHHHHHHHHHHCCCCE---------EEecccccCcHHHHhhccchHHHHHHH
Q ss_pred HHHHHHHHHHcCCcEEEecC----CCH--HHHHHHHHhcCCCEE-EeC-CCCCCCcee
Q 022677 241 VVETALALQEVGCFSVVLEC----VPP--PVAAAATSALQIPTI-GIG-AGPFCSGQV 290 (293)
Q Consensus 241 ~l~rA~a~eeAGA~~IvlE~----vp~--e~a~~It~~l~iPtI-GIG-aG~~~dGQv 290 (293)
+++.++-+++.|-+=|++-. ++. +.-+.++++++-|+- |+= ||+.-||.|
T Consensus 162 A~~~~~~le~~~f~~iviSlKsSdv~~~i~ayr~la~~~dyPLHLGvTEAG~~~~g~I 219 (359)
T PF04551_consen 162 ALEHVRILEELGFDDIVISLKSSDVPETIEAYRLLAERMDYPLHLGVTEAGTGEDGTI 219 (359)
T ss_dssp HHHHHHHHHHCT-GGEEEEEEBSSHHHHHHHHHHHHHH--S-EEEEBSSEESCHHHHH
T ss_pred HHHHHHHHHHCCCCcEEEEEEeCChHHHHHHHHHHHHhcCCCeEEeecCCCCcccchh
No 289
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=90.98 E-value=10 Score=34.03 Aligned_cols=153 Identities=23% Similarity=0.222 Sum_probs=79.7
Q ss_pred HHHHcC--CcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhC
Q 022677 107 HLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (293)
Q Consensus 107 iae~AG--~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaG 184 (293)
++++.+ ++++=+|-.+ +...|. .-++.+++.. ++++.|+=++--+ +++....+.+.+.|
T Consensus 16 ~~~~~~~~v~~iKig~~l-~~~~G~------------~~v~~l~~~~--~~v~lD~K~~Dig----~t~~~~~~~~~~~g 76 (213)
T TIGR01740 16 LADSLGPEIEVIKVGIDL-LLDGGD------------KIIDELAKLN--KLIFLDLKFADIP----NTVKLQYESKIKQG 76 (213)
T ss_pred HHHhcCCcCcEEEECHHH-HHhcCH------------HHHHHHHHcC--CCEEEEEeecchH----HHHHHHHHHHHhcC
Confidence 566666 6665577544 223332 3344554433 2477888764332 23323333344689
Q ss_pred CCEEEeCCC--CCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC
Q 022677 185 MDAIKLEGG--SPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP 262 (293)
Q Consensus 185 a~gVkiEgg--~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp 262 (293)
|+.|.+-.. .+...+.++.+.+.|-.+.+=.-++...... . ..+ -.+.++++++..+++|.++++ |-|
T Consensus 77 ad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~~-----~-~~~--~~~~v~~~a~~~~~~g~~g~v--~~~ 146 (213)
T TIGR01740 77 ADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSLD-----Y-GED--TMEKVLEYAKEAKAFGLDGPV--CSA 146 (213)
T ss_pred CCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhh-----h-CcC--HHHHHHHHHHHhhhcCCeEEE--eCH
Confidence 999888753 2223334444444453444333333222111 1 111 235889999999999999987 444
Q ss_pred HHHHHHHHHhcC-CCEE--EeCCCC-CCCce
Q 022677 263 PPVAAAATSALQ-IPTI--GIGAGP-FCSGQ 289 (293)
Q Consensus 263 ~e~a~~It~~l~-iPtI--GIGaG~-~~dGQ 289 (293)
+.++.+.+..+ .+++ |||+-. ..++|
T Consensus 147 -~~~~~ir~~~~~~~~vtPGI~~~g~~~~dq 176 (213)
T TIGR01740 147 -EEAKEIRKFTGDFLILTPGIRLQSKGADDQ 176 (213)
T ss_pred -HHHHHHHHhcCCceEEeCCcCCCCCCcCCc
Confidence 33455555433 3344 777542 34444
No 290
>PLN02591 tryptophan synthase
Probab=90.97 E-value=4.5 Score=37.94 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=52.0
Q ss_pred ccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCH--HHHHHHHHHHHHHhCCCEEEeCCCC-CCcHHHHHHHHHcCC
Q 022677 133 LPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST--NQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGI 209 (293)
Q Consensus 133 ~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~--e~av~~A~rl~keaGa~gVkiEgg~-~~~~~~ikal~~~GI 209 (293)
..+++++.+..++.+++..+.|++ +.+| .|+ ...+++-.+..+++|++|+-|=|=. ++..+.++++.+.||
T Consensus 59 ~G~~~~~~~~~~~~~r~~~~~p~i-----lm~Y-~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl 132 (250)
T PLN02591 59 KGTTLDSVISMLKEVAPQLSCPIV-----LFTY-YNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGI 132 (250)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCEE-----EEec-ccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCC
Confidence 347888999999999877777744 2245 233 2255555666779999999998843 234567778888898
Q ss_pred cEE
Q 022677 210 AVM 212 (293)
Q Consensus 210 pV~ 212 (293)
...
T Consensus 133 ~~I 135 (250)
T PLN02591 133 ELV 135 (250)
T ss_pred eEE
Confidence 876
No 291
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=90.96 E-value=2 Score=40.74 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=56.4
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHH-HH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL-KE 182 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~-ke 182 (293)
.++.++++|+|++++-- |.-...+-+++..|-+.|+++++.|+++=|.| ++..+++.. .++. +-
T Consensus 93 ~~~~a~~~Gadav~~~p---------P~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~--g~~l~~~~l----~~L~~~~ 157 (303)
T PRK03620 93 YAQAAERAGADGILLLP---------PYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRD--NAVLTADTL----ARLAERC 157 (303)
T ss_pred HHHHHHHhCCCEEEECC---------CCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHH----HHHHhhC
Confidence 35778899999998732 22223467899999999999999998888865 466777755 3555 33
Q ss_pred hCCCEEEeCCCC
Q 022677 183 GGMDAIKLEGGS 194 (293)
Q Consensus 183 aGa~gVkiEgg~ 194 (293)
-.+.+||-..+.
T Consensus 158 pni~giK~s~~d 169 (303)
T PRK03620 158 PNLVGFKDGVGD 169 (303)
T ss_pred CCEEEEEeCCCC
Confidence 579999988664
No 292
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=90.95 E-value=14 Score=36.46 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=78.0
Q ss_pred cCCHHHHHHhhh-CCCcEEEEecCC------HHHHHHHH---HcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHH
Q 022677 78 RVTLTHLRQKHK-NGEPITMVTAYD------YPSAVHLD---SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (293)
Q Consensus 78 ~~t~~~Lr~l~~-~g~pi~m~tayD------~~SAriae---~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV 147 (293)
+.-++-+|++.. .++|+++.--.+ ...|++++ +.|+|.|..--+ ..+-...+++|=+..++.+
T Consensus 115 ~fGi~g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~-------~ge~~~~~~eER~~~v~~a 187 (367)
T cd08205 115 RFGIEGLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDEL-------LADQPYAPFEERVRACMEA 187 (367)
T ss_pred CCCchhHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeecccc-------ccCcccCCHHHHHHHHHHH
Confidence 566777787664 357764432221 23455555 459999975222 2344567999988887777
Q ss_pred HcccC-----CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHH-HHcCCcEEEecc
Q 022677 148 ARGAK-----RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGI-VEAGIAVMGHVG 216 (293)
Q Consensus 148 ~Ra~~-----~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal-~~~GIpV~GHiG 216 (293)
++.+. .++++++.- .+.+++++.+.... +.|++++.+--...- ....+.+ .+.++|+++|.-
T Consensus 188 v~~a~~~TG~~~~y~~nit-----~~~~e~i~~a~~a~-~~Gad~vmv~~~~~g-~~~~~~l~~~~~lpi~~H~a 255 (367)
T cd08205 188 VRRANEETGRKTLYAPNIT-----GDPDELRRRADRAV-EAGANALLINPNLVG-LDALRALAEDPDLPIMAHPA 255 (367)
T ss_pred HHHHHHhhCCcceEEEEcC-----CCHHHHHHHHHHHH-HcCCCEEEEeccccc-ccHHHHHHhcCCCeEEEccC
Confidence 66543 465667654 23488999986654 799999998753321 1112233 355899999953
No 293
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.90 E-value=14 Score=34.77 Aligned_cols=145 Identities=14% Similarity=0.181 Sum_probs=85.7
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEee
Q 022677 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaD 159 (293)
-++.|++..++-...++-++||...+..+++ .+|++-+|..... --+++ +++.+ ++.| |+.=
T Consensus 67 gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e-~vdilqIgs~~~~------------n~~LL---~~va~-tgkP-Vilk 128 (250)
T PRK13397 67 GIRYLHEVCQEFGLLSVSEIMSERQLEEAYD-YLDVIQVGARNMQ------------NFEFL---KTLSH-IDKP-ILFK 128 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh-cCCEEEECccccc------------CHHHH---HHHHc-cCCe-EEEe
Confidence 4555666555545557789999999999998 6999999843322 12344 44444 5678 5544
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCC-CEEEeC-CCC----C---Cc-HHHHHHHHH-cCCcEEEeccccceeeeecCCc
Q 022677 160 LPFGTYESSTNQAVDTAVRILKEGGM-DAIKLE-GGS----P---SR-ITAARGIVE-AGIAVMGHVGLTPQAISVLGGF 228 (293)
Q Consensus 160 mpfGsy~~s~e~av~~A~rl~keaGa-~gVkiE-gg~----~---~~-~~~ikal~~-~GIpV~GHiGLtPq~~~~lgGf 228 (293)
.++ + .++++....+-. +.+.|. +.+-+| |-. . .. ...+..+.+ -+.||+- -|. |.
T Consensus 129 ~G~--~-~t~~e~~~A~e~-i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPViv----d~S--Hs---- 194 (250)
T PRK13397 129 RGL--M-ATIEEYLGALSY-LQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIV----DVS--HS---- 194 (250)
T ss_pred CCC--C-CCHHHHHHHHHH-HHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEE----CCC--CC----
Confidence 442 2 466766555444 446777 678888 311 0 00 112223333 5777651 122 22
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC
Q 022677 229 RPQGKNVTSAVKVVETALALQEVGCFSVVLECVP 262 (293)
Q Consensus 229 ~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp 262 (293)
.|+. +-+..-+++-..+||++|++|.-+
T Consensus 195 --~G~r----~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 195 --TGRR----DLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred --Cccc----chHHHHHHHHHHhCCCEEEEEecC
Confidence 2321 223445788889999999999755
No 294
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=90.88 E-value=12 Score=36.40 Aligned_cols=104 Identities=13% Similarity=0.024 Sum_probs=60.0
Q ss_pred CcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEE--C--chhhhhhccCCCCccC------CH----HHHHH
Q 022677 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--G--DSAAMVVHGHDTTLPI------TL----EEMLV 142 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dailv--G--dSla~~~lG~~dt~~v------tl----~eml~ 142 (293)
+-+|..++.+..+. + .-+|+.+.++|||.|-+ | .-+....- |-++.. ++ .-+++
T Consensus 140 ~~mt~~eI~~ii~~---f-------~~aA~~a~~aGfDgVeih~ahGyLl~qFlS--p~~N~R~D~yGGslenR~rf~~e 207 (338)
T cd02933 140 RALTTEEIPGIVAD---F-------RQAARNAIEAGFDGVEIHGANGYLIDQFLR--DGSNKRTDEYGGSIENRARFLLE 207 (338)
T ss_pred CCCCHHHHHHHHHH---H-------HHHHHHHHHcCCCEEEEccccchhHHHhcC--CccCCCCCcCCCcHHHhhhHHHH
Confidence 56888888876542 1 13788999999999954 2 11111100 111111 22 33456
Q ss_pred HHHHHHcccCCCeEEeeCC------CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 022677 143 HCRAVARGAKRPLLVGDLP------FGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (293)
Q Consensus 143 h~raV~Ra~~~p~vvaDmp------fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg 193 (293)
.+++|++.++.-+|..=|. -+.++.+.++.++.+..+ ++.|+|.|.+-.|
T Consensus 208 ii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l-~~~g~d~i~vs~g 263 (338)
T cd02933 208 VVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKEL-NKRGLAYLHLVEP 263 (338)
T ss_pred HHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHH-HHcCCcEEEEecC
Confidence 6677777665412443221 112345788888877665 4789999999655
No 295
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=90.83 E-value=5.5 Score=36.45 Aligned_cols=77 Identities=18% Similarity=0.088 Sum_probs=45.3
Q ss_pred HHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhC
Q 022677 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (293)
Q Consensus 106 riae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~-~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaG 184 (293)
+.+-+.|+|.|=+-=..+...-| .++++....++|++.. +.|+ -+=+|. +| .+.++.. .+.|+..++|
T Consensus 77 ~~Av~~GAdEiDvv~n~g~l~~g-------~~~~v~~ei~~i~~~~~g~~l-KvIlE~-~~-L~~~ei~-~a~~ia~eaG 145 (211)
T TIGR00126 77 KEAIKYGADEVDMVINIGALKDG-------NEEVVYDDIRAVVEACAGVLL-KVIIET-GL-LTDEEIR-KACEICIDAG 145 (211)
T ss_pred HHHHHcCCCEEEeecchHhhhCC-------cHHHHHHHHHHHHHHcCCCeE-EEEEec-CC-CCHHHHH-HHHHHHHHhC
Confidence 34456688888332222221111 2455556666666654 3453 334666 35 5666654 6777777999
Q ss_pred CCEEEeCCC
Q 022677 185 MDAIKLEGG 193 (293)
Q Consensus 185 a~gVkiEgg 193 (293)
||-||.--|
T Consensus 146 ADfvKTsTG 154 (211)
T TIGR00126 146 ADFVKTSTG 154 (211)
T ss_pred CCEEEeCCC
Confidence 999999854
No 296
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=90.73 E-value=4.4 Score=45.80 Aligned_cols=159 Identities=15% Similarity=0.171 Sum_probs=86.5
Q ss_pred HcCCcEEEECchhhhhhccCCCCcc-CCHHHHHHHHHHHHc----cc-----CCCeEEeeCCCCC-------------C-
Q 022677 110 SAGIDICLVGDSAAMVVHGHDTTLP-ITLEEMLVHCRAVAR----GA-----KRPLLVGDLPFGT-------------Y- 165 (293)
Q Consensus 110 ~AG~DailvGdSla~~~lG~~dt~~-vtl~eml~h~raV~R----a~-----~~p~vvaDmpfGs-------------y- 165 (293)
+||+|+|.| .+.+++..++.+-+. =...|+...+-.++| .. ...||.++++-.+ |
T Consensus 61 ~AGAdII~T-NTF~a~~~~L~~yg~~~~~~eln~~av~lAr~Aa~~~~~~~~~~~~VAGsIGP~g~~~~lgp~~~~~~~~ 139 (1178)
T TIGR02082 61 EAGADIIET-NTFNSTTISQADYDLEDLIYDLNFKGAKLARAVADEFTLTPEKPRFVAGSMGPTNKTATLSPDVERPGFR 139 (1178)
T ss_pred HHhchheec-CCccCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEeCCCCCCccCCCccccCccC
Confidence 579998876 455555444433221 113444433333333 21 1356778875322 1
Q ss_pred CCCHHHHHHH---HHHHHHHhCCCEEEeCCCCCC--cHHHHHHHHH------cCCcEEEeccccceeeeecCCcccccCC
Q 022677 166 ESSTNQAVDT---AVRILKEGGMDAIKLEGGSPS--RITAARGIVE------AGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (293)
Q Consensus 166 ~~s~e~av~~---A~rl~keaGa~gVkiEgg~~~--~~~~ikal~~------~GIpV~GHiGLtPq~~~~lgGf~vqGrt 234 (293)
..+.++..+. -++.+.++|||.+-+|--... ....+.++.+ .++||+-.+-... -.|...-|.+
T Consensus 140 ~~t~del~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d-----~~Gr~~~G~~ 214 (1178)
T TIGR02082 140 NVTYDELVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVD-----TSGRTLSGQT 214 (1178)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEEC-----CCCeeCCCCc
Confidence 1344544333 234444799999999964321 2233444444 4689985521111 1234445666
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCC--CH---HHHHHHHHhcCCCEEEe
Q 022677 235 VTSAVKVVETALALQEVGCFSVVLECV--PP---PVAAAATSALQIPTIGI 280 (293)
Q Consensus 235 ~~~a~e~l~rA~a~eeAGA~~IvlE~v--p~---e~a~~It~~l~iPtIGI 280 (293)
.+.+...+ +..|+++|=+=|. |+ +.++.+.+..+.|++..
T Consensus 215 ~~~~~~~l------~~~~~~avGlNCs~gP~~m~~~l~~l~~~~~~pi~vy 259 (1178)
T TIGR02082 215 IEAFLTSL------EHAGIDMIGLNCALGPDEMRPHLKHLSEHAEAYVSCH 259 (1178)
T ss_pred HHHHHHHH------hcCCCCEEEeCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 55443333 4789999999998 33 44566666667888765
No 297
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=90.71 E-value=4.2 Score=37.49 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 103 ~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ke 182 (293)
..++.++++|+|.+++.| . ...|+..+ ..++ .++.+++.++.|++.+ |+. .|++++ .++++.
T Consensus 159 ~~~~~l~~~G~~~iivt~-i--~~~g~~~g--~~~~----~~~~i~~~~~ipvia~----GGi-~s~~di----~~~~~~ 220 (254)
T TIGR00735 159 EWAKEVEKLGAGEILLTS-M--DKDGTKSG--YDLE----LTKAVSEAVKIPVIAS----GGA-GKPEHF----YEAFTK 220 (254)
T ss_pred HHHHHHHHcCCCEEEEeC-c--CcccCCCC--CCHH----HHHHHHHhCCCCEEEe----CCC-CCHHHH----HHHHHc
Confidence 345788899999988744 1 22344222 2332 3455666678884443 456 477777 356655
Q ss_pred hCCCEEEe-----CCCCCCcHHHHHHHHHcCCcE
Q 022677 183 GGMDAIKL-----EGGSPSRITAARGIVEAGIAV 211 (293)
Q Consensus 183 aGa~gVki-----Egg~~~~~~~ikal~~~GIpV 211 (293)
+|+++|-+ |+.. ....+++.+.+.||||
T Consensus 221 g~~dgv~~g~a~~~~~~-~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 221 GKADAALAASVFHYREI-TIGEVKEYLAERGIPV 253 (254)
T ss_pred CCcceeeEhHHHhCCCC-CHHHHHHHHHHCCCcc
Confidence 66999866 4432 2445667778899986
No 298
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=90.69 E-value=3.4 Score=40.45 Aligned_cols=104 Identities=21% Similarity=0.118 Sum_probs=63.9
Q ss_pred HHHHHHHhCCCEEEeC-----CCCC--------CcHHHHHHHHHcCCcEEEecccccee-eeecCCcccccCCHHHHHHH
Q 022677 176 AVRILKEGGMDAIKLE-----GGSP--------SRITAARGIVEAGIAVMGHVGLTPQA-ISVLGGFRPQGKNVTSAVKV 241 (293)
Q Consensus 176 A~rl~keaGa~gVkiE-----gg~~--------~~~~~ikal~~~GIpV~GHiGLtPq~-~~~lgGf~vqGrt~~~a~e~ 241 (293)
+.+.+ +.|||+||+- |... .+..+.+...+.|||++..+= ++.. ...-.+ .-.++. +-+.+
T Consensus 112 ve~a~-~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l-~y~~~~~~~~~-~~~a~~--~p~~V 186 (340)
T PRK12858 112 VRRIK-EAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPL-TYDGKGSDKKA-EEFAKV--KPEKV 186 (340)
T ss_pred HHHHH-HcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEe-ccCCCcccccc-cccccc--CHHHH
Confidence 34444 7899999993 2110 122344556789999996521 2221 110000 000111 23467
Q ss_pred HHHHHHHH--HcCCcEEEecCCC-----------------H---HHHHHHHHhcCCCEEEeCCCC
Q 022677 242 VETALALQ--EVGCFSVVLECVP-----------------P---PVAAAATSALQIPTIGIGAGP 284 (293)
Q Consensus 242 l~rA~a~e--eAGA~~IvlE~vp-----------------~---e~a~~It~~l~iPtIGIGaG~ 284 (293)
..-++.+. +.|+|.+=+|-.- + +..+.+++..++|.+..|+|.
T Consensus 187 ~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~ 251 (340)
T PRK12858 187 IKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV 251 (340)
T ss_pred HHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC
Confidence 77788888 4999999887652 1 567788888999999999997
No 299
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=90.60 E-value=2.8 Score=39.20 Aligned_cols=127 Identities=20% Similarity=0.161 Sum_probs=73.5
Q ss_pred eEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC--CCCcHHHHHHHHHcCCcEEEeccccceeeeecCCccccc
Q 022677 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG--SPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (293)
Q Consensus 155 ~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg--~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqG 232 (293)
.|+.|+=|+ +.-++++.+.+...+.|++++.+-.. .+...+..+.+...|-.+.+=.-||...... +.-++
T Consensus 64 ~VflDlK~~----DIpnT~~~~~~~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~---~~~~~ 136 (240)
T COG0284 64 KVFLDLKLA----DIPNTVALAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLTSMGELQ---LAELG 136 (240)
T ss_pred ceEEeeecc----cchHHHHHHHHHhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcCceEEEEEeCCCchhhh---hhhcc
Confidence 488998885 44556666666666789999999863 3444555666665543333322232222110 11123
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEE--EeCCCCCCCce
Q 022677 233 KNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTI--GIGAGPFCSGQ 289 (293)
Q Consensus 233 rt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtI--GIGaG~~~dGQ 289 (293)
-...-.+.+++.++.-.++|.++++.-+-..+.+++++. -+.+++ |||+|..-+.|
T Consensus 137 ~~~~~~~~v~~~a~~~~~~G~dgvv~~~~e~~~ir~~~g-~~~~iltPGIg~~~~~gdQ 194 (240)
T COG0284 137 INSSLEEQVLRLAKLAGEAGLDGVVCSAEEVAAIREILG-PDFLILTPGIGAGSQGGDQ 194 (240)
T ss_pred ccchHHHHHHHHHHHhccCCceEEEcCHHHHHHHHHhcC-CCcEEECCCcCcCcCCCCc
Confidence 223345688888999999999988854433344455543 224444 88885555444
No 300
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=90.53 E-value=2.6 Score=40.86 Aligned_cols=43 Identities=28% Similarity=0.384 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcC-CcEEEecC-----------------CC----HHHHHHHHHhcCCCEEEeC
Q 022677 239 VKVVETALALQEVG-CFSVVLEC-----------------VP----PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 239 ~e~l~rA~a~eeAG-A~~IvlE~-----------------vp----~e~a~~It~~l~iPtIGIG 281 (293)
++.++-++.++++| +|.|-+-+ .+ -+.++.+.+.+++|+|+-|
T Consensus 228 ~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G 292 (343)
T cd04734 228 DEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAG 292 (343)
T ss_pred HHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeC
Confidence 56678899999999 89998721 01 2677889999999998765
No 301
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=90.49 E-value=4.1 Score=38.43 Aligned_cols=76 Identities=17% Similarity=0.077 Sum_probs=56.1
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHH-H
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK-E 182 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~k-e 182 (293)
.|+.++++|+|++++-- |--...+-++++.|.+.|+.+++.|+++=+.+ ++..+++.. .++.+ -
T Consensus 91 ~a~~a~~~Gadav~~~p---------P~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~--g~~l~~~~~----~~La~~~ 155 (296)
T TIGR03249 91 IARLAEKAGADGYLLLP---------PYLINGEQEGLYAHVEAVCESTDLGVIVYQRD--NAVLNADTL----ERLADRC 155 (296)
T ss_pred HHHHHHHhCCCEEEECC---------CCCCCCCHHHHHHHHHHHHhccCCCEEEEeCC--CCCCCHHHH----HHHHhhC
Confidence 57888899999998632 22233466999999999999999998887733 455677755 35664 3
Q ss_pred hCCCEEEeCCCC
Q 022677 183 GGMDAIKLEGGS 194 (293)
Q Consensus 183 aGa~gVkiEgg~ 194 (293)
-.+.|||-..+.
T Consensus 156 ~nvvgiKds~~d 167 (296)
T TIGR03249 156 PNLVGFKDGIGD 167 (296)
T ss_pred CCEEEEEeCCCC
Confidence 589999987654
No 302
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=90.46 E-value=1.8 Score=40.76 Aligned_cols=93 Identities=24% Similarity=0.219 Sum_probs=64.5
Q ss_pred CHHHHHHhhhCCCcEEEEec-CCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEe
Q 022677 80 TLTHLRQKHKNGEPITMVTA-YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~ta-yD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vva 158 (293)
|++.-..+.++| ..++|-+ -|..-||-.|++||-++.=.-+-..+-+|..+. +..+.|+...+.| |++
T Consensus 119 tl~Aae~Lv~eG-F~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n~---------~~l~iiie~a~VP-viV 187 (262)
T COG2022 119 TLKAAEQLVKEG-FVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQNP---------YNLEIIIEEADVP-VIV 187 (262)
T ss_pred HHHHHHHHHhCC-CEEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcCCH---------HHHHHHHHhCCCC-EEE
Confidence 555555676665 5677755 578889999999999997333444445665553 3445666667888 999
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
|-+.|+. .++. ..| |-|+|+|-+--
T Consensus 188 DAGiG~p----SdAa----~aM-ElG~DaVL~NT 212 (262)
T COG2022 188 DAGIGTP----SDAA----QAM-ELGADAVLLNT 212 (262)
T ss_pred eCCCCCh----hHHH----HHH-hcccceeehhh
Confidence 9888744 5553 457 69999998863
No 303
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=90.42 E-value=19 Score=35.45 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=82.3
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCC
Q 022677 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (293)
Q Consensus 83 ~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpf 162 (293)
.|++..++-...++.++||..++..+.+. +|++-+|..... --+++ +.+.+ ++.| |+.=.+.
T Consensus 173 ~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lkI~s~~~~------------n~~LL---~~~a~-~gkP-Vilk~G~ 234 (360)
T PRK12595 173 ILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQIGARNMQ------------NFELL---KAAGR-VNKP-VLLKRGL 234 (360)
T ss_pred HHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEEECccccc------------CHHHH---HHHHc-cCCc-EEEeCCC
Confidence 34443344345578899999999999999 999999843321 12444 44433 5678 4444443
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCC-CEEEeC-CCC-------C-CcHHHHHHHHH-cCCcEEEeccccceeeeecCCcccc
Q 022677 163 GTYESSTNQAVDTAVRILKEGGM-DAIKLE-GGS-------P-SRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQ 231 (293)
Q Consensus 163 Gsy~~s~e~av~~A~rl~keaGa-~gVkiE-gg~-------~-~~~~~ikal~~-~GIpV~GHiGLtPq~~~~lgGf~vq 231 (293)
+ .+.++....+ +.+.+.|- +-+-+| |-. . .-...+..|.+ -+.||+ +.| .|+ .
T Consensus 235 --~-~t~~e~~~Av-e~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~----~d~--~Hs------~ 298 (360)
T PRK12595 235 --S-ATIEEFIYAA-EYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVM----VDV--THS------T 298 (360)
T ss_pred --C-CCHHHHHHHH-HHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEE----EeC--CCC------C
Confidence 2 3566655444 44446676 577788 421 1 11122333443 577765 323 122 2
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEecCCC
Q 022677 232 GKNVTSAVKVVETALALQEVGCFSVVLECVP 262 (293)
Q Consensus 232 Grt~~~a~e~l~rA~a~eeAGA~~IvlE~vp 262 (293)
|+. +-+..-+++-..+|||++|+|.-+
T Consensus 299 G~r----~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 299 GRR----DLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred cch----hhHHHHHHHHHHcCCCeEEEEecC
Confidence 322 123446777789999999999654
No 304
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=90.37 E-value=2.1 Score=42.36 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=75.5
Q ss_pred ecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHH
Q 022677 98 TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (293)
Q Consensus 98 tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~ 177 (293)
+.=|..++.++.+.|..-++....+ .+.|+|+ ++++ ..|...- .+++. .+ |.
T Consensus 54 gVtd~~fr~~~~~~Galgvvsaegl---~~~~~~~-----~~~~---~QI~g~~---------------~~~~~-a~-aa 105 (369)
T TIGR01304 54 ALVSPEFAIELGELGGLGVLNLEGL---WGRHEDP-----DPAI---AKIAEAY---------------EEGDQ-AA-AT 105 (369)
T ss_pred cccCHHHHHHHHHcCCcccccchHH---HhcCCCH-----HHHH---HHHhhcC---------------CChHH-HH-HH
Confidence 5689999999999998333211111 2345554 3333 2222111 12333 22 45
Q ss_pred HHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEE
Q 022677 178 RILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (293)
Q Consensus 178 rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~Iv 257 (293)
+++++.+++.++.| .+..+++++.++++.+- +.++| ....+.++.++|+|+|+|+
T Consensus 106 ~~~~e~~~~~~~p~----l~~~ii~~vr~a~Vtvk--iRl~~-------------------~~~~e~a~~l~eAGad~I~ 160 (369)
T TIGR01304 106 RLLQELHAAPLKPE----LLGERIAEVRDSGVITA--VRVSP-------------------QNAREIAPIVVKAGADLLV 160 (369)
T ss_pred HHHHHcCCCccChH----HHHHHHHHHHhcceEEE--EecCC-------------------cCHHHHHHHHHHCCCCEEE
Confidence 66777787775433 34567788888763332 12211 2456788889999999999
Q ss_pred ecC-----------CCHHHHHHHHHhcCCCEEE
Q 022677 258 LEC-----------VPPPVAAAATSALQIPTIG 279 (293)
Q Consensus 258 lE~-----------vp~e~a~~It~~l~iPtIG 279 (293)
+-+ -+.+.+..+.+++++|+|+
T Consensus 161 ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 161 IQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA 193 (369)
T ss_pred EeccchhhhccCCCCCHHHHHHHHHHCCCCEEE
Confidence 841 2234456666788999985
No 305
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=90.34 E-value=7.5 Score=35.65 Aligned_cols=89 Identities=24% Similarity=0.252 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCcEEEECchh-hhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDSA-AMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 103 ~SAriae~AG~DailvGdSl-a~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~k 181 (293)
..+..+++.|++.+++.|-- -.+.-|| . +...+.+++.++.| +++- |+. .|.++.. ++++
T Consensus 157 ~~~~~~~~~g~~~ii~~~i~~~g~~~g~------d----~~~i~~~~~~~~ip-via~---GGv-~s~~d~~----~~~~ 217 (253)
T PRK02083 157 EWAKEVEELGAGEILLTSMDRDGTKNGY------D----LELTRAVSDAVNVP-VIAS---GGA-GNLEHFV----EAFT 217 (253)
T ss_pred HHHHHHHHcCCCEEEEcCCcCCCCCCCc------C----HHHHHHHHhhCCCC-EEEE---CCC-CCHHHHH----HHHH
Confidence 34567788899988764311 1122344 2 23445666767888 5544 445 4677773 4565
Q ss_pred HhCCCEEEe-----CCCCCCcHHHHHHHHHcCCcE
Q 022677 182 EGGMDAIKL-----EGGSPSRITAARGIVEAGIAV 211 (293)
Q Consensus 182 eaGa~gVki-----Egg~~~~~~~ikal~~~GIpV 211 (293)
..|++++-+ |+.. ...++.+.+.+.||+|
T Consensus 218 ~~G~~gvivg~al~~~~~-~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 218 EGGADAALAASIFHFGEI-TIGELKAYLAEQGIPV 251 (253)
T ss_pred hCCccEEeEhHHHHcCCC-CHHHHHHHHHHCCCcc
Confidence 569999987 4432 2345566677788886
No 306
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=90.33 E-value=7 Score=34.00 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=68.4
Q ss_pred HcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 022677 110 SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (293)
Q Consensus 110 ~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVk 189 (293)
+.|++++..-+ .+-..-.+.+++...+.+++..+.+|++-| + .++..+.|++||+
T Consensus 24 ~~g~~~v~lR~---------~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~-----~-----------~~la~~~g~~GvH 78 (196)
T TIGR00693 24 KGGVTLVQLRD---------KGSNTRERLALAEKLQELCRRYGVPFIVND-----R-----------VDLALALGADGVH 78 (196)
T ss_pred hcCCCEEEEec---------CCCCHHHHHHHHHHHHHHHHHhCCeEEEEC-----H-----------HHHHHHcCCCEEe
Confidence 46888875531 222223345567777778777778877754 1 1344468999999
Q ss_pred eCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecC---------
Q 022677 190 LEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC--------- 260 (293)
Q Consensus 190 iEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~--------- 260 (293)
+..... .....+.+...+. ..|.+....+ .+....+.|+|.+++-.
T Consensus 79 l~~~~~-~~~~~r~~~~~~~--------------------~ig~s~h~~~----e~~~a~~~g~dyi~~~~v~~t~~k~~ 133 (196)
T TIGR00693 79 LGQDDL-PASEARALLGPDK--------------------IIGVSTHNLE----ELAEAEAEGADYIGFGPIFPTPTKKD 133 (196)
T ss_pred cCcccC-CHHHHHHhcCCCC--------------------EEEEeCCCHH----HHHHHhHcCCCEEEECCccCCCCCCC
Confidence 965431 1222222211111 1222222222 23345568999998521
Q ss_pred ----CCHHHHHHHHHhc-CCCEEEeCC
Q 022677 261 ----VPPPVAAAATSAL-QIPTIGIGA 282 (293)
Q Consensus 261 ----vp~e~a~~It~~l-~iPtIGIGa 282 (293)
...+..+.+.+.. ++|++.+|+
T Consensus 134 ~~~~~g~~~l~~~~~~~~~~pv~a~GG 160 (196)
T TIGR00693 134 PAPPAGVELLREIAATSIDIPIVAIGG 160 (196)
T ss_pred CCCCCCHHHHHHHHHhcCCCCEEEECC
Confidence 1246777887765 499998874
No 307
>PRK00865 glutamate racemase; Provisional
Probab=90.29 E-value=0.92 Score=42.20 Aligned_cols=90 Identities=21% Similarity=0.275 Sum_probs=62.1
Q ss_pred CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccc
Q 022677 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ 231 (293)
Q Consensus 152 ~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vq 231 (293)
+.|.-+.|=+.||+ | .++...+.+ -..+-|.+-|... .| -
T Consensus 5 ~~~IgvfDSGiGGL--t---vl~~i~~~l--p~~~~iY~~D~~~--~P-------------------------------Y 44 (261)
T PRK00865 5 NAPIGVFDSGVGGL--T---VLREIRRLL--PDEHIIYVGDTAR--FP-------------------------------Y 44 (261)
T ss_pred CCeEEEEECCccHH--H---HHHHHHHHC--CCCCEEEEecCCC--CC-------------------------------C
Confidence 34666788888887 2 333334555 2456777766431 11 2
Q ss_pred c-CCHHHHH-HHHHHHHHHHHcCCcEEEecCCCHH--HHHHHHHhcCCCEEEeC
Q 022677 232 G-KNVTSAV-KVVETALALQEVGCFSVVLECVPPP--VAAAATSALQIPTIGIG 281 (293)
Q Consensus 232 G-rt~~~a~-e~l~rA~a~eeAGA~~IvlE~vp~e--~a~~It~~l~iPtIGIG 281 (293)
| |+.++.. .+.+-++.+++.|||+|++-|-+.. ....+.+.+++|+|||-
T Consensus 45 G~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvigi~ 98 (261)
T PRK00865 45 GEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVALPDLRERYDIPVVGIV 98 (261)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHhCCCCEEeeH
Confidence 3 7776654 4556678899999999999999853 46899999999999953
No 308
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.20 E-value=6.5 Score=37.81 Aligned_cols=104 Identities=16% Similarity=0.160 Sum_probs=63.1
Q ss_pred CcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEE-Cch--hhhhhc------cCCC-Cc--cCCHHHHHHHH
Q 022677 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDS--AAMVVH------GHDT-TL--PITLEEMLVHC 144 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dailv-GdS--la~~~l------G~~d-t~--~vtl~eml~h~ 144 (293)
+.+|.+++++..+.= +-.|+.+.++|||.|-+ +.. +-.-.| --+. ++ +=-+...++.+
T Consensus 137 ~~mt~~eI~~~i~~~----------~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI 206 (338)
T cd04733 137 RAMTEEEIEDVIDRF----------AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIY 206 (338)
T ss_pred CcCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHH
Confidence 568888888776521 12788899999999943 221 100000 0000 11 11233457888
Q ss_pred HHHHcccCCCe-EEeeCC-----CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 022677 145 RAVARGAKRPL-LVGDLP-----FGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (293)
Q Consensus 145 raV~Ra~~~p~-vvaDmp-----fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg 193 (293)
++|+++++.-| |..|+- -+++ +.+++++-+.++ ++.|++.|.+-++
T Consensus 207 ~aIR~avG~d~~v~vris~~~~~~~g~--~~eea~~ia~~L-e~~Gvd~iev~~g 258 (338)
T cd04733 207 DAIRAAVGPGFPVGIKLNSADFQRGGF--TEEDALEVVEAL-EEAGVDLVELSGG 258 (338)
T ss_pred HHHHHHcCCCCeEEEEEcHHHcCCCCC--CHHHHHHHHHHH-HHcCCCEEEecCC
Confidence 89988886443 557774 1345 688888877665 5789999987655
No 309
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=90.20 E-value=3.7 Score=40.91 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=67.3
Q ss_pred CcCCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCe
Q 022677 77 QRVTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~-g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~ 155 (293)
...|-.+|+.+.+. +-|+++=++-+.-.|+.+.++|+|.|.|+...|- -.|+..-|++-+.+..+++.. ..|
T Consensus 238 ~~~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr----~~d~~~~t~~~L~ei~~~~~~--~~~- 310 (383)
T cd03332 238 PSLTWEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGR----QVDGSIAALDALPEIVEAVGD--RLT- 310 (383)
T ss_pred CCCCHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCc----CCCCCcCHHHHHHHHHHHhcC--CCe-
Confidence 35777888777654 6789999999999999999999999998755542 234544455544443333321 345
Q ss_pred EEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 156 vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
|++| |+.. +-.+.+ +.+ ..||++|-+-
T Consensus 311 vi~d---GGIr-~G~Dv~----KAL-aLGA~~v~iG 337 (383)
T cd03332 311 VLFD---SGVR-TGADIM----KAL-ALGAKAVLIG 337 (383)
T ss_pred EEEe---CCcC-cHHHHH----HHH-HcCCCEEEEc
Confidence 8888 5563 445553 455 5799999884
No 310
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.20 E-value=4 Score=39.64 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=58.7
Q ss_pred CcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEE-C---chhhhhh-ccC---CCCccCCHH----HHHHHH
Q 022677 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-G---DSAAMVV-HGH---DTTLPITLE----EMLVHC 144 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dailv-G---dSla~~~-lG~---~dt~~vtl~----eml~h~ 144 (293)
+.+|..++++..++ + .-+|+.+.+||||.|-+ + .-+.... -.+ .|--.=+++ -.++.+
T Consensus 132 ~~mt~~eI~~ii~~---f-------~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii 201 (353)
T cd04735 132 RELTHEEIEDIIDA---F-------GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVV 201 (353)
T ss_pred ccCCHHHHHHHHHH---H-------HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHH
Confidence 56888888876542 1 13788899999999943 2 1111110 000 111011232 235666
Q ss_pred HHHHcccC----CCeEE-eeCC-----CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 022677 145 RAVARGAK----RPLLV-GDLP-----FGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (293)
Q Consensus 145 raV~Ra~~----~p~vv-aDmp-----fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg 193 (293)
++|+.+++ ..|.+ .-+. .|+ .+.++.++.+..+ ++.|+|.|.+-++
T Consensus 202 ~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g--~~~ee~~~i~~~L-~~~GvD~I~Vs~g 257 (353)
T cd04735 202 KAVQEVIDKHADKDFILGYRFSPEEPEEPG--IRMEDTLALVDKL-ADKGLDYLHISLW 257 (353)
T ss_pred HHHHHHhccccCCCceEEEEECcccccCCC--CCHHHHHHHHHHH-HHcCCCEEEeccC
Confidence 77777665 34433 2222 233 3678888876555 5789999999664
No 311
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=90.13 E-value=8.6 Score=39.28 Aligned_cols=94 Identities=13% Similarity=0.193 Sum_probs=58.9
Q ss_pred HHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC--CCCCCCCCHHHHHHHHHHHHHHh
Q 022677 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL--PFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 106 riae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm--pfGsy~~s~e~av~~A~rl~kea 183 (293)
+.+-++|+|.+-+-|++.- ++-|...++.+++ .+.- +.+.+ -|+. ..+.+..++.|.++. +.
T Consensus 102 ~~A~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~-~G~~-v~~~i~~t~~p-~~t~e~~~~~a~~l~-~~ 165 (467)
T PRK14041 102 KKVAEYGLDIIRIFDALND------------IRNLEKSIEVAKK-HGAH-VQGAISYTVSP-VHTLEYYLEFARELV-DM 165 (467)
T ss_pred HHHHHCCcCEEEEEEeCCH------------HHHHHHHHHHHHH-CCCE-EEEEEEeccCC-CCCHHHHHHHHHHHH-Hc
Confidence 5567889999988887753 3445555555443 2322 33222 2332 247788888887776 79
Q ss_pred CCCEEEeCCCCC-----CcHHHHHHHHH-cCCcEEEec
Q 022677 184 GMDAIKLEGGSP-----SRITAARGIVE-AGIAVMGHV 215 (293)
Q Consensus 184 Ga~gVkiEgg~~-----~~~~~ikal~~-~GIpV~GHi 215 (293)
||+.|.|-|-.. .+..++++|.+ .++|+--|.
T Consensus 166 Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~ 203 (467)
T PRK14041 166 GVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHS 203 (467)
T ss_pred CCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEe
Confidence 999999999532 23455666654 367777663
No 312
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=90.11 E-value=15 Score=37.72 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=59.8
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCC-e-EE-eeCCCCCCCCCHHHHHHHHHHHHH
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP-L-LV-GDLPFGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p-~-vv-aDmpfGsy~~s~e~av~~A~rl~k 181 (293)
-+.+.+.|+|++-+.|++- ..+-|..+++.+++.=... + +. .+-| .-+.+-.++.+.++.
T Consensus 111 v~~a~~~Gidi~Rifd~ln------------d~~n~~~ai~~ak~~G~~~~~~i~yt~sp----~~t~~y~~~~a~~l~- 173 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALN------------DPRNIQQALRAVKKTGKEAQLCIAYTTSP----VHTLNYYLSLVKELV- 173 (468)
T ss_pred HHHHHHCCCCEEEEcccCC------------CHHHHHHHHHHHHHcCCEEEEEEEEEeCC----cCcHHHHHHHHHHHH-
Confidence 5666778999999998662 4566777777776522111 1 11 2222 225566777777766
Q ss_pred HhCCCEEEeCCCCC-----CcHHHHHHHHHc-CCcEEEec
Q 022677 182 EGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGHV 215 (293)
Q Consensus 182 eaGa~gVkiEgg~~-----~~~~~ikal~~~-GIpV~GHi 215 (293)
+.|++.|.|-|-.. .+..++++|.+. ++|+--|.
T Consensus 174 ~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~ 213 (468)
T PRK12581 174 EMGADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHT 213 (468)
T ss_pred HcCCCEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEEe
Confidence 79999999999532 234566666653 47776663
No 313
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=90.08 E-value=10 Score=34.84 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHcccCCCeEE-ee-CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC-CCcHHHHHHHHHcCCcE
Q 022677 135 ITLEEMLVHCRAVARGAKRPLLV-GD-LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAV 211 (293)
Q Consensus 135 vtl~eml~h~raV~Ra~~~p~vv-aD-mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~-~~~~~~ikal~~~GIpV 211 (293)
++++.....++.|++..+.|++. +- -|+-.| ..++- ++.++++|++++-+=|=. +.....++.+.+.|++.
T Consensus 59 ~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~--G~~~f----i~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~ 132 (242)
T cd04724 59 VTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY--GLERF----LRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDL 132 (242)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh--CHHHH----HHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcE
Confidence 45667788888998777777432 22 122112 13544 445668999999995521 23446778888999876
Q ss_pred E
Q 022677 212 M 212 (293)
Q Consensus 212 ~ 212 (293)
.
T Consensus 133 i 133 (242)
T cd04724 133 I 133 (242)
T ss_pred E
Confidence 5
No 314
>PRK15452 putative protease; Provisional
Probab=90.01 E-value=24 Score=35.84 Aligned_cols=158 Identities=12% Similarity=0.058 Sum_probs=92.2
Q ss_pred cEEEEecCCHHHHHHHHHcCCcEEEECc-hhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHH
Q 022677 93 PITMVTAYDYPSAVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQ 171 (293)
Q Consensus 93 pi~m~tayD~~SAriae~AG~DailvGd-Sla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~ 171 (293)
|=.+.-|-|....+.|-++|+|+|..|- +.++-.. ....+++|+...++-. +..+..+ ..=+|.--++...+.
T Consensus 4 peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~----~~~f~~edl~eav~~a-h~~g~kv-yvt~n~i~~e~el~~ 77 (443)
T PRK15452 4 PELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVR----NNEFNHENLALGINEA-HALGKKF-YVVVNIAPHNAKLKT 77 (443)
T ss_pred cEEEEECCCHHHHHHHHHCCCCEEEECCCccchhhh----ccCCCHHHHHHHHHHH-HHcCCEE-EEEecCcCCHHHHHH
Confidence 4466678888888888999999998764 3333221 1345677776655543 3343342 222232223222333
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHc--CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHH
Q 022677 172 AVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA--GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (293)
Q Consensus 172 av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~--GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~e 249 (293)
..+. .+.+.+.|+|+|-+-| +-.+..+.+. ++++.+-..+ + --+ ...++.|.
T Consensus 78 ~~~~-l~~l~~~gvDgvIV~d-----~G~l~~~ke~~p~l~ih~stql-----n--------i~N-------~~a~~f~~ 131 (443)
T PRK15452 78 FIRD-LEPVIAMKPDALIMSD-----PGLIMMVREHFPEMPIHLSVQA-----N--------AVN-------WATVKFWQ 131 (443)
T ss_pred HHHH-HHHHHhCCCCEEEEcC-----HHHHHHHHHhCCCCeEEEEecc-----c--------CCC-------HHHHHHHH
Confidence 4333 3344478999999987 3345555554 4555332111 0 011 23577888
Q ss_pred HcCCcEEEecC-CCHHHHHHHHHhc-CCCE--EEeCC
Q 022677 250 EVGCFSVVLEC-VPPPVAAAATSAL-QIPT--IGIGA 282 (293)
Q Consensus 250 eAGA~~IvlE~-vp~e~a~~It~~l-~iPt--IGIGa 282 (293)
+.|+..+++.- ++-+.++.|.++. ++++ +.-|+
T Consensus 132 ~lG~~rvvLSrELsl~EI~~i~~~~~~~elEvfVHGa 168 (443)
T PRK15452 132 QMGLTRVILSRELSLEEIEEIRQQCPDMELEVFVHGA 168 (443)
T ss_pred HCCCcEEEECCcCCHHHHHHHHhhCCCCCEEEEEEcc
Confidence 99999999875 6667778888765 4544 44444
No 315
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=90.00 E-value=3.9 Score=39.59 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=62.9
Q ss_pred CcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEE-Cc---hhhhhhccC----CC--CccC--CHHHHHHHH
Q 022677 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GD---SAAMVVHGH----DT--TLPI--TLEEMLVHC 144 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dailv-Gd---Sla~~~lG~----~d--t~~v--tl~eml~h~ 144 (293)
+.+|..++.+..+.=. -.|+.+.++|||.|-+ |. -+....--. .| ++.+ -+...++.+
T Consensus 125 ~~mt~~eI~~i~~~f~----------~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv 194 (353)
T cd02930 125 RELSEEEIEQTIEDFA----------RCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIV 194 (353)
T ss_pred CCCCHHHHHHHHHHHH----------HHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHH
Confidence 5688888887665311 2788889999999944 31 010000000 00 1111 144567788
Q ss_pred HHHHcccCCCeEE------eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 145 RAVARGAKRPLLV------GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 145 raV~Ra~~~p~vv------aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
++|++..+..|.+ .|.--|++ +.+++++.+.++ ++.|+|.|.+-.
T Consensus 195 ~aIR~~vG~d~~v~iRi~~~D~~~~g~--~~~e~~~i~~~L-e~~G~d~i~vs~ 245 (353)
T cd02930 195 RAVRAAVGEDFIIIYRLSMLDLVEGGS--TWEEVVALAKAL-EAAGADILNTGI 245 (353)
T ss_pred HHHHHHcCCCceEEEEecccccCCCCC--CHHHHHHHHHHH-HHcCCCEEEeCC
Confidence 8888888766554 35443444 688999887665 578999999943
No 316
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=90.00 E-value=7.8 Score=37.64 Aligned_cols=124 Identities=23% Similarity=0.208 Sum_probs=70.8
Q ss_pred CcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEE-Cc---hhhhhhcc----CCCCccCCHH----HHHHHH
Q 022677 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GD---SAAMVVHG----HDTTLPITLE----EMLVHC 144 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dailv-Gd---Sla~~~lG----~~dt~~vtl~----eml~h~ 144 (293)
+.+|..++++..+.= .-.|+.+.+||||.|-+ +. -+....-- -.|--.=+++ -.++.+
T Consensus 130 ~~mt~eeI~~ii~~f----------~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii 199 (337)
T PRK13523 130 VEMTKEQIKETVLAF----------KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREII 199 (337)
T ss_pred CcCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHH
Confidence 568888888776521 13788899999999943 21 11110000 0111001343 335666
Q ss_pred HHHHcccCCCeEE----eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCC----------cHHHHHHHHH-cCC
Q 022677 145 RAVARGAKRPLLV----GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS----------RITAARGIVE-AGI 209 (293)
Q Consensus 145 raV~Ra~~~p~vv----aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~----------~~~~ikal~~-~GI 209 (293)
++|++.++.|+.+ .|.-.|++ +.++.++.+.++- +.|+|.|.+-+|... ..+..+.+.+ .+|
T Consensus 200 ~~ir~~~~~~v~vRis~~d~~~~G~--~~~e~~~i~~~l~-~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~i 276 (337)
T PRK13523 200 DAVKEVWDGPLFVRISASDYHPGGL--TVQDYVQYAKWMK-EQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANI 276 (337)
T ss_pred HHHHHhcCCCeEEEecccccCCCCC--CHHHHHHHHHHHH-HcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCC
Confidence 7777766556433 33334444 6899998876664 789999999876410 1234444544 357
Q ss_pred cEEE
Q 022677 210 AVMG 213 (293)
Q Consensus 210 pV~G 213 (293)
||++
T Consensus 277 pVi~ 280 (337)
T PRK13523 277 ATGA 280 (337)
T ss_pred cEEE
Confidence 7764
No 317
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=89.98 E-value=2.7 Score=41.87 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=63.3
Q ss_pred cCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeE
Q 022677 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (293)
Q Consensus 78 ~~t~~~Lr~l~~-~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~v 156 (293)
..|-++|..+.+ -+-|+++=++-+.-.|+.+.++|+|.|.|+...+-. .|+..-|++-+.+..+++. .+.| |
T Consensus 231 ~ltW~di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~----~d~~~~t~~~L~~i~~a~~--~~~~-v 303 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQ----LDGVLSSARALPAIADAVK--GDIT-I 303 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCC----CCCcccHHHHHHHHHHHhc--CCCe-E
Confidence 466677766543 356999999999999999999999999887543321 1222333433333233331 2345 8
Q ss_pred EeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 157 vaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
++| |+. .+..+++ +.+ ..||++|.+-
T Consensus 304 i~d---GGI-r~g~Di~----KAL-aLGA~~V~iG 329 (381)
T PRK11197 304 LAD---SGI-RNGLDVV----RMI-ALGADTVLLG 329 (381)
T ss_pred Eee---CCc-CcHHHHH----HHH-HcCcCceeEh
Confidence 888 666 3556663 455 4799999883
No 318
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=89.93 E-value=18 Score=34.39 Aligned_cols=155 Identities=18% Similarity=0.164 Sum_probs=92.7
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEe
Q 022677 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (293)
Q Consensus 79 ~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vva 158 (293)
.-++-|++-+++=..-++.-.+|.--+..+.+. +|+|-+|.-..- +| |++ +++.+ ++.| |..
T Consensus 60 eGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~-vDilQIgArn~r------n~------~LL---~a~g~-t~kp-V~l 121 (258)
T TIGR01362 60 EGLKILQKVKEEFGVPILTDVHESSQCEPVAEV-VDIIQIPAFLCR------QT------DLL---VAAAK-TGRI-VNV 121 (258)
T ss_pred HHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh-CcEEEeCchhcc------hH------HHH---HHHhc-cCCe-EEe
Confidence 455666665543233366678888888888777 999999944322 11 333 44444 5666 333
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC----------CcHHHHHHHHHcCCcEEEeccccceeeeecCCc
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP----------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGF 228 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~----------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf 228 (293)
= -|-+ .++++-+-.|-++..++.-+.+-+|=|.. ...+++| +.+.||+ +-|.+....+|-
T Consensus 122 K--rG~~-~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~k---~~~~PVi----~DpSHsvq~pg~ 191 (258)
T TIGR01362 122 K--KGQF-LSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMR---ELGCPVI----FDATHSVQQPGG 191 (258)
T ss_pred c--CCCc-CCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHH---hcCCCEE----EeCCccccCCCC
Confidence 3 3323 68898877777777554455777786631 1234444 4488998 344433222221
Q ss_pred cccc-CCHHHHHHHHHHHHHHHHcCCcEEEecCCCH
Q 022677 229 RPQG-KNVTSAVKVVETALALQEVGCFSVVLECVPP 263 (293)
Q Consensus 229 ~vqG-rt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~ 263 (293)
.| .+.-+.+-+..-|++-..+|||++|+|.-|.
T Consensus 192 --~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvHpd 225 (258)
T TIGR01362 192 --LGGASGGLREFVPTLARAAVAVGIDGLFMETHPD 225 (258)
T ss_pred --CCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 11 2222334455668889999999999998773
No 319
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=89.91 E-value=22 Score=35.31 Aligned_cols=198 Identities=10% Similarity=0.067 Sum_probs=108.8
Q ss_pred hhhCCCcEEEEecCCHHHHHH----HHHcCCcEEE-ECchhhhhhcc--CCC----Cc-cCCHHHHHHHHHHHHcccCCC
Q 022677 87 KHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHG--HDT----TL-PITLEEMLVHCRAVARGAKRP 154 (293)
Q Consensus 87 l~~~g~pi~m~tayD~~SAri----ae~AG~Dail-vGdSla~~~lG--~~d----t~-~vtl~eml~h~raV~Ra~~~p 154 (293)
-++++--+-..|+|+..+++. ||+...++|+ ++.......-| +++ .. -+....+...++.+++-.+.|
T Consensus 22 A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VP 101 (357)
T TIGR01520 22 AKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVP 101 (357)
T ss_pred HHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCC
Confidence 335666788999999999874 5777999998 43222211122 333 22 233445777888888878888
Q ss_pred eEEeeCCCC-CCC-CCHHHHHHHHHHHHHHhC---CCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEeccccceee
Q 022677 155 LLVGDLPFG-TYE-SSTNQAVDTAVRILKEGG---MDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLTPQAI 222 (293)
Q Consensus 155 ~vvaDmpfG-sy~-~s~e~av~~A~rl~keaG---a~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLtPq~~ 222 (293)
|+.-|.-| +|+ .-.+++++.....+.++| ..+|.+-+... ....+++..-..||.|=|=+|-++..+
T Consensus 102 -ValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~E 180 (357)
T TIGR01520 102 -VVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEE 180 (357)
T ss_pred -EEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcc
Confidence 77777765 231 013444443222223344 99999976542 133455666678999988887555333
Q ss_pred eecCCcc----cccCCHHHHHHHHHHHHHHHHcCCcEEEe----------cCCC---HHHHHHH----HHhcCCC----E
Q 022677 223 SVLGGFR----PQGKNVTSAVKVVETALALQEVGCFSVVL----------ECVP---PPVAAAA----TSALQIP----T 277 (293)
Q Consensus 223 ~~lgGf~----vqGrt~~~a~e~l~rA~a~eeAGA~~Ivl----------E~vp---~e~a~~I----t~~l~iP----t 277 (293)
....+-. ..--+.++|.+.+++-- ..-|+|++=+ ..-| -++.+.| .+++++| +
T Consensus 181 d~~~~~~~~~~~~yTdPeeA~~Fv~~t~--~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~ 258 (357)
T TIGR01520 181 DGVDNSHMDAEALYTQPEDVYYAYEELS--KISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPL 258 (357)
T ss_pred CCcccccccccccCCCHHHHHHHHHHhc--cCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCC
Confidence 2100000 00112233333332210 0117777642 2223 4788888 5777888 1
Q ss_pred -EEeCCCCCCC
Q 022677 278 -IGIGAGPFCS 287 (293)
Q Consensus 278 -IGIGaG~~~d 287 (293)
+.+-+|+++.
T Consensus 259 pLVLHGgSGi~ 269 (357)
T TIGR01520 259 FFVFHGGSGST 269 (357)
T ss_pred cEEEeCCCCCC
Confidence 4566666653
No 320
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=89.89 E-value=9.7 Score=39.97 Aligned_cols=95 Identities=21% Similarity=0.230 Sum_probs=59.9
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC--CCCCCCCCHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL--PFGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm--pfGsy~~s~e~av~~A~rl~k 181 (293)
..+.+.++|+|.+-+-|++.-. +.|...++.+++ .+.- +.+.+ -++.+ .+++..++.+.++.
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~-~G~~-v~~~i~~t~~p~-~t~~~~~~~a~~l~- 164 (592)
T PRK09282 101 FVEKAAENGIDIFRIFDALNDV------------RNMEVAIKAAKK-AGAH-VQGTISYTTSPV-HTIEKYVELAKELE- 164 (592)
T ss_pred HHHHHHHCCCCEEEEEEecChH------------HHHHHHHHHHHH-cCCE-EEEEEEeccCCC-CCHHHHHHHHHHHH-
Confidence 3556678899999888877443 445555555543 2222 22222 22333 47899999988876
Q ss_pred HhCCCEEEeCCCCC-----CcHHHHHHHHHc-CCcEEEe
Q 022677 182 EGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (293)
Q Consensus 182 eaGa~gVkiEgg~~-----~~~~~ikal~~~-GIpV~GH 214 (293)
++|++.|.|-|-.. .+..+++++.++ ++|+--|
T Consensus 165 ~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H 203 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLH 203 (592)
T ss_pred HcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999532 234566666543 5676666
No 321
>PLN02535 glycolate oxidase
Probab=89.87 E-value=4.3 Score=40.18 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=67.1
Q ss_pred CcCCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCe
Q 022677 77 QRVTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~-g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~ 155 (293)
...|.++++.+.+. +.||++=++-+.-.|+.+.++|+|.|.+....+. ..|....|++-+.+..+++. ...|
T Consensus 208 ~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr----~~d~~~~t~~~L~ev~~av~--~~ip- 280 (364)
T PLN02535 208 ASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGAR----QLDYSPATISVLEEVVQAVG--GRVP- 280 (364)
T ss_pred CCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcC----CCCCChHHHHHHHHHHHHHh--cCCC-
Confidence 35788888776542 4688888888888999999999999987655542 22444444444433333332 1356
Q ss_pred EEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 156 vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
|++| |+. .+..+++ +.+ ..||++|.+-.
T Consensus 281 Vi~d---GGI-r~g~Dv~----KAL-alGA~aV~vGr 308 (364)
T PLN02535 281 VLLD---GGV-RRGTDVF----KAL-ALGAQAVLVGR 308 (364)
T ss_pred EEee---CCC-CCHHHHH----HHH-HcCCCEEEECH
Confidence 8888 677 4666763 456 58999999853
No 322
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=89.80 E-value=13 Score=32.39 Aligned_cols=133 Identities=19% Similarity=0.198 Sum_probs=73.3
Q ss_pred CHHHHHHhhhCCCcEE-EEecCCH--HHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeE
Q 022677 80 TLTHLRQKHKNGEPIT-MVTAYDY--PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~-m~tayD~--~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~v 156 (293)
+++.+++.+ .+-|+. .....|. ..++.+-++|+|.+.+=+. +. .-+.++++..++. .+.. +
T Consensus 43 ~i~~i~~~~-~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~--------~~--~~~~~~~i~~~~~----~g~~-~ 106 (202)
T cd04726 43 AVRALREAF-PDKIIVADLKTADAGALEAEMAFKAGADIVTVLGA--------AP--LSTIKKAVKAAKK----YGKE-V 106 (202)
T ss_pred HHHHHHHHC-CCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEee--------CC--HHHHHHHHHHHHH----cCCe-E
Confidence 445555432 234443 3355565 3677788999999986321 11 1123444444432 3344 5
Q ss_pred EeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC----C---CCCcHHHHHHHHH-cCCcEEEeccccceeeeecCCc
Q 022677 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG----G---SPSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGF 228 (293)
Q Consensus 157 vaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg----g---~~~~~~~ikal~~-~GIpV~GHiGLtPq~~~~lgGf 228 (293)
.++++ +. .++++.. +.+ +.|++.|++.= + .....+.++.+.+ ..+|++ ..||
T Consensus 107 ~v~~~--~~-~t~~e~~----~~~-~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~-----------~~GG- 166 (202)
T cd04726 107 QVDLI--GV-EDPEKRA----KLL-KLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVA-----------VAGG- 166 (202)
T ss_pred EEEEe--CC-CCHHHHH----HHH-HCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEE-----------EECC-
Confidence 66655 23 3677774 334 46999999841 1 1223455666665 345554 2332
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 022677 229 RPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (293)
Q Consensus 229 ~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE 259 (293)
-+. +.++.+.++|||++++=
T Consensus 167 ----I~~-------~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 167 ----ITP-------DTLPEFKKAGADIVIVG 186 (202)
T ss_pred ----cCH-------HHHHHHHhcCCCEEEEe
Confidence 222 24677889999999875
No 323
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=89.78 E-value=5.6 Score=40.42 Aligned_cols=69 Identities=30% Similarity=0.500 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCeEEeeCCCCCCCCCHHHHHHHHHH
Q 022677 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVR 178 (293)
Q Consensus 100 yD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~-~~p~vvaDmpfGsy~~s~e~av~~A~r 178 (293)
.+.-.++.+-++|+|+|.+ |+. +|+. ..++...+.+++.. +.|++++| - .+.+++ .+
T Consensus 228 ~~~e~a~~L~~agvdvivv-D~a----~g~~-------~~vl~~i~~i~~~~p~~~vi~g~-----v-~t~e~a----~~ 285 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVV-DTA----HGHS-------EGVLDRVREIKAKYPDVQIIAGN-----V-ATAEAA----RA 285 (486)
T ss_pred chHHHHHHHHHhCCCEEEE-ECC----CCcc-------hhHHHHHHHHHhhCCCCCEEEec-----c-CCHHHH----HH
Confidence 3466777777899998865 332 2332 34566667777665 55645533 2 466777 45
Q ss_pred HHHHhCCCEEEeC
Q 022677 179 ILKEGGMDAIKLE 191 (293)
Q Consensus 179 l~keaGa~gVkiE 191 (293)
++ ++||++|++-
T Consensus 286 l~-~aGad~i~vg 297 (486)
T PRK05567 286 LI-EAGADAVKVG 297 (486)
T ss_pred HH-HcCCCEEEEC
Confidence 66 6999999873
No 324
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=89.65 E-value=1.9 Score=41.24 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=72.0
Q ss_pred CcEEEEecCCHH----HHHHHHHcCCcEE-E-ECchhhh-hhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCC
Q 022677 92 EPITMVTAYDYP----SAVHLDSAGIDIC-L-VGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGT 164 (293)
Q Consensus 92 ~pi~m~tayD~~----SAriae~AG~Dai-l-vGdSla~-~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGs 164 (293)
..++-+...|.- .|.++++.|+|.| + .|=.... +.-|+-....=..+.+..-+++++++++.| |.+-+=.|
T Consensus 55 p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~p-vsvKiR~g- 132 (309)
T PF01207_consen 55 PLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIP-VSVKIRLG- 132 (309)
T ss_dssp TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSE-EEEEEESE-
T ss_pred ceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccc-eEEecccc-
Confidence 455777777764 3456666788888 4 5533333 356677777778888899999999999888 77777764
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEeCCCC-------CCcHHHHHHHH-HcCCcEEEec
Q 022677 165 YESSTNQAVDTAVRILKEGGMDAIKLEGGS-------PSRITAARGIV-EAGIAVMGHV 215 (293)
Q Consensus 165 y~~s~e~av~~A~rl~keaGa~gVkiEgg~-------~~~~~~ikal~-~~GIpV~GHi 215 (293)
+..+.++.++.+..+. ++|++.|-+-+=. .--++.++++. ...|||+++=
T Consensus 133 ~~~~~~~~~~~~~~l~-~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NG 190 (309)
T PF01207_consen 133 WDDSPEETIEFARILE-DAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANG 190 (309)
T ss_dssp CT--CHHHHHHHHHHH-HTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEES
T ss_pred cccchhHHHHHHHHhh-hcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcC
Confidence 5456788888876654 7999999887611 01234445453 4469999873
No 325
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=89.56 E-value=21 Score=34.89 Aligned_cols=115 Identities=10% Similarity=0.012 Sum_probs=69.7
Q ss_pred CcEEEEecCCHHHHHHHHHcCCcEEEECchhh----hhhccCCCCccCCHHHHHHHHHHHHc---ccCCCeEEeeCCCCC
Q 022677 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAA----MVVHGHDTTLPITLEEMLVHCRAVAR---GAKRPLLVGDLPFGT 164 (293)
Q Consensus 92 ~pi~m~tayD~~SAriae~AG~DailvGdSla----~~~lG~~dt~~vtl~eml~h~raV~R---a~~~p~vvaDmpfGs 164 (293)
..++.+.-.+.---..+.++|+|.+-+-.+.+ ...++ .+.+|++..++...+ ..+.. +..+.++++
T Consensus 65 ~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~------~s~~e~l~~~~~~i~~ak~~g~~-v~~~~ed~~ 137 (365)
T TIGR02660 65 ARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLR------KDRAWVLERLARLVSFARDRGLF-VSVGGEDAS 137 (365)
T ss_pred cEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhC------cCHHHHHHHHHHHHHHHHhCCCE-EEEeecCCC
Confidence 34555554555566677788999985443332 22344 345665543332222 12332 667888865
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHHc-CCcEEEec
Q 022677 165 YESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGHV 215 (293)
Q Consensus 165 y~~s~e~av~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~~-GIpV~GHi 215 (293)
. .+++..++.+.++. +.|++.|.|-|-.. ....+++.+.+. ++|+--|.
T Consensus 138 r-~~~~~l~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~ 192 (365)
T TIGR02660 138 R-ADPDFLVELAEVAA-EAGADRFRFADTVGILDPFSTYELVRALRQAVDLPLEMHA 192 (365)
T ss_pred C-CCHHHHHHHHHHHH-HcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4 78888888877765 79999999999532 234556666553 67766663
No 326
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=89.52 E-value=2.9 Score=40.20 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=57.8
Q ss_pred CcEEEEecCCHHHHHHHHHcCCcEEEECchhhh------------------hhccCCCCc--------cCCHHHHHHHHH
Q 022677 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM------------------VVHGHDTTL--------PITLEEMLVHCR 145 (293)
Q Consensus 92 ~pi~m~tayD~~SAriae~AG~DailvGdSla~------------------~~lG~~dt~--------~vtl~eml~h~r 145 (293)
..+.|..|-+..-|..+.++|+|+|-+.-+... ...||.+.. ...++.+ +
T Consensus 112 ~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elL----k 187 (283)
T cd04727 112 KVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELV----K 187 (283)
T ss_pred CCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHH----H
Confidence 567999999999999999999999974321110 125553333 2344443 4
Q ss_pred HHHcccCCCeE-EeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 146 AVARGAKRPLL-VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 146 aV~Ra~~~p~v-vaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
.+++..+.|++ ++. |+. .+++++ .+++ +.||++|-+=.
T Consensus 188 ~l~~~~~iPVV~iAe---GGI-~Tpena----~~v~-e~GAdgVaVGS 226 (283)
T cd04727 188 ETAKLGRLPVVNFAA---GGV-ATPADA----ALMM-QLGADGVFVGS 226 (283)
T ss_pred HHHHhcCCCeEEEEe---CCC-CCHHHH----HHHH-HcCCCEEEEcH
Confidence 45555668854 365 566 477877 4566 58999998754
No 327
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.49 E-value=23 Score=35.01 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=88.2
Q ss_pred cCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 78 ~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
..-++-|++-.++-...++.++||......+++. +|++-+|.-... . ....+++.+ ++.|+++
T Consensus 151 ~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~-~d~lqIga~~~~-----------n----~~LL~~va~-t~kPVll 213 (352)
T PRK13396 151 ESALELLAAAREATGLGIITEVMDAADLEKIAEV-ADVIQVGARNMQ-----------N----FSLLKKVGA-QDKPVLL 213 (352)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh-CCeEEECccccc-----------C----HHHHHHHHc-cCCeEEE
Confidence 3455566664444344577899999999999998 899999843321 1 223455554 5678443
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHhCC-CEEEeCCCC---C-----C--cHHHHHHHHHc-CCcEEEeccccceeeeec
Q 022677 158 GDLPFGTYESSTNQAVDTAVRILKEGGM-DAIKLEGGS---P-----S--RITAARGIVEA-GIAVMGHVGLTPQAISVL 225 (293)
Q Consensus 158 aDmpfGsy~~s~e~av~~A~rl~keaGa-~gVkiEgg~---~-----~--~~~~ikal~~~-GIpV~GHiGLtPq~~~~l 225 (293)
=.+. . .+.++....+-.+. +.|- +.+-+|-|. + . -...+..+.+. +.||+ +-|.+.
T Consensus 214 -k~G~--~-~t~ee~~~A~e~i~-~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi----~DpsH~--- 281 (352)
T PRK13396 214 -KRGM--A-ATIDEWLMAAEYIL-AAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIM----IDPSHG--- 281 (352)
T ss_pred -eCCC--C-CCHHHHHHHHHHHH-HcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEE----ECCccc---
Confidence 3333 2 46777766655555 5666 577777643 1 0 01223334443 78886 233221
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC
Q 022677 226 GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP 262 (293)
Q Consensus 226 gGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp 262 (293)
.|+.+ -+..-+++-..+|||+|++|.-|
T Consensus 282 -----~G~sd----~~~~~a~AAva~GAdGliIE~H~ 309 (352)
T PRK13396 282 -----TGKSE----YVPSMAMAAIAAGTDSLMIEVHP 309 (352)
T ss_pred -----CCcHH----HHHHHHHHHHhhCCCeEEEEecC
Confidence 14432 23357788889999999999643
No 328
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=89.36 E-value=9.6 Score=37.32 Aligned_cols=137 Identities=16% Similarity=0.213 Sum_probs=87.1
Q ss_pred HHHHHHHHHcccCCCeEEeeCCCCCCC------------C----CHHHHHHHHHHHHHHhCCCEEEeCCCCC-CcHHHHH
Q 022677 140 MLVHCRAVARGAKRPLLVGDLPFGTYE------------S----STNQAVDTAVRILKEGGMDAIKLEGGSP-SRITAAR 202 (293)
Q Consensus 140 ml~h~raV~Ra~~~p~vvaDmpfGsy~------------~----s~e~av~~A~rl~keaGa~gVkiEgg~~-~~~~~ik 202 (293)
+...++.|++..+.-+|++|.=+=.|. . |.+...+.|+... ++|||.|--.|--. ++..+.+
T Consensus 99 v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil~~g~idND~Tl~~L~~~Al~~A-~AGaDiVAPSdMMDGrV~aIR~ 177 (323)
T PRK09283 99 VQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGILEDGYVDNDETLELLAKQALSQA-EAGADIVAPSDMMDGRVGAIRE 177 (323)
T ss_pred HHHHHHHHHHhCCCcEEEEeeeccCCCCCCceecccCCcCcCHHHHHHHHHHHHHHH-HhCCCEEEcccccccHHHHHHH
Confidence 466778888888888788997543331 1 2233445555555 79999998775311 2456677
Q ss_pred HHHHcCCcEEEeccccceee---ee-cCCccc-------cc-C-----CHHHHHHHHHHHHHHHHcCCcEEEec-CCC-H
Q 022677 203 GIVEAGIAVMGHVGLTPQAI---SV-LGGFRP-------QG-K-----NVTSAVKVVETALALQEVGCFSVVLE-CVP-P 263 (293)
Q Consensus 203 al~~~GIpV~GHiGLtPq~~---~~-lgGf~v-------qG-r-----t~~~a~e~l~rA~a~eeAGA~~IvlE-~vp-~ 263 (293)
+|.++|.. ++++.+-+. +. .|=||- .| | +.....|+++.+..=.+=|||+|.+. ++| -
T Consensus 178 aLd~~g~~---~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YL 254 (323)
T PRK09283 178 ALDEAGFT---DVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKPALPYL 254 (323)
T ss_pred HHHHCCCC---CCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHH
Confidence 78887752 233333111 10 111111 02 1 12234688888888888999999986 888 6
Q ss_pred HHHHHHHHhcCCCEEEe
Q 022677 264 PVAAAATSALQIPTIGI 280 (293)
Q Consensus 264 e~a~~It~~l~iPtIGI 280 (293)
++++.+.++.++|+...
T Consensus 255 DIi~~~k~~~~~PvaaY 271 (323)
T PRK09283 255 DIIRRVKDEFNLPVAAY 271 (323)
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 99999999999999864
No 329
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=89.24 E-value=11 Score=35.25 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=78.1
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhC
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaG 184 (293)
+...+++|+|.|=+|. |.. -++|...++.+++-...+-+.+= .- .+.+. ++ + ..+.|
T Consensus 28 ~~~L~~~Gv~~IEvG~---------P~~----~~~~~~~~~~l~~~~~~~~v~~~---~r--~~~~d-i~---~-a~~~g 84 (262)
T cd07948 28 AKALDAFGVDYIELTS---------PAA----SPQSRADCEAIAKLGLKAKILTH---IR--CHMDD-AR---I-AVETG 84 (262)
T ss_pred HHHHHHcCCCEEEEEC---------CCC----CHHHHHHHHHHHhCCCCCcEEEE---ec--CCHHH-HH---H-HHHcC
Confidence 4567899999998883 222 24555556666543322323221 11 23333 22 2 23689
Q ss_pred CCEEEeCCCC-----------------CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHH
Q 022677 185 MDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALA 247 (293)
Q Consensus 185 a~gVkiEgg~-----------------~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a 247 (293)
++.|.+--.. +...+.++.+.+.|+.|+.++. . . -+++ .+.+++-+++
T Consensus 85 ~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e----d--a-------~r~~--~~~l~~~~~~ 149 (262)
T cd07948 85 VDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE----D--S-------FRSD--LVDLLRVYRA 149 (262)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE----e--e-------CCCC--HHHHHHHHHH
Confidence 9999994321 1133456777888999986632 1 1 1221 3456677778
Q ss_pred HHHcCCcEEEecC-----CCH---HHHHHHHHhcCCCE
Q 022677 248 LQEVGCFSVVLEC-----VPP---PVAAAATSALQIPT 277 (293)
Q Consensus 248 ~eeAGA~~IvlE~-----vp~---e~a~~It~~l~iPt 277 (293)
+.++|++.|.+-- .|. ++.+.+.+.+++|+
T Consensus 150 ~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i 187 (262)
T cd07948 150 VDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDI 187 (262)
T ss_pred HHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 8889999998872 243 45566666666553
No 330
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.18 E-value=4 Score=41.03 Aligned_cols=65 Identities=25% Similarity=0.445 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCeEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 103 ~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~-~p~vvaDmpfGsy~~s~e~av~~A~rl~k 181 (293)
-.+..+-++|+|+|.+ |+.. |+ ..++.+++ +.+++..+ .+++.+|.- +.+++ .+++
T Consensus 156 ~~v~~lv~aGvDvI~i-D~a~----g~----~~~~~~~v---~~ik~~~p~~~vi~g~V~------T~e~a----~~l~- 212 (404)
T PRK06843 156 ERVEELVKAHVDILVI-DSAH----GH----STRIIELV---KKIKTKYPNLDLIAGNIV------TKEAA----LDLI- 212 (404)
T ss_pred HHHHHHHhcCCCEEEE-ECCC----CC----ChhHHHHH---HHHHhhCCCCcEEEEecC------CHHHH----HHHH-
Confidence 5667777899999997 5542 43 23444554 55555443 444556754 44666 4566
Q ss_pred HhCCCEEEe
Q 022677 182 EGGMDAIKL 190 (293)
Q Consensus 182 eaGa~gVki 190 (293)
++|||+|++
T Consensus 213 ~aGaD~I~v 221 (404)
T PRK06843 213 SVGADCLKV 221 (404)
T ss_pred HcCCCEEEE
Confidence 689999997
No 331
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=89.16 E-value=5.3 Score=38.49 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=56.4
Q ss_pred HHHHHhhhC-CCcEEE---EecCCHHHHHHHHHcCCcEEEECchhhhh-h-----ccCC---------CCccCCHHHHHH
Q 022677 82 THLRQKHKN-GEPITM---VTAYDYPSAVHLDSAGIDICLVGDSAAMV-V-----HGHD---------TTLPITLEEMLV 142 (293)
Q Consensus 82 ~~Lr~l~~~-g~pi~m---~tayD~~SAriae~AG~DailvGdSla~~-~-----lG~~---------dt~~vtl~eml~ 142 (293)
..++.+.+. +-|+++ -+....-.|+.++++|+|+|-++...+.. . .+.. +.-.++.-+.+.
T Consensus 168 ~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~ 247 (326)
T cd02811 168 ERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLL 247 (326)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHH
Confidence 455555554 567776 23367889999999999999875432211 1 1111 111222223333
Q ss_pred HHHHHHccc-CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 143 HCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 143 h~raV~Ra~-~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
. +++.. +.| |+++ |+. .+.++++ +.+ ..||++|.+-
T Consensus 248 ~---~~~~~~~ip-Iias---GGI-r~~~dv~----kal-~lGAd~V~i~ 284 (326)
T cd02811 248 E---VRSALPDLP-LIAS---GGI-RNGLDIA----KAL-ALGADLVGMA 284 (326)
T ss_pred H---HHHHcCCCc-EEEE---CCC-CCHHHHH----HHH-HhCCCEEEEc
Confidence 3 33333 566 8887 667 4677774 456 4799999884
No 332
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=89.10 E-value=9.5 Score=37.39 Aligned_cols=161 Identities=9% Similarity=0.013 Sum_probs=84.0
Q ss_pred CcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEE-C---chhhhhhccC----CCCccCCHH----HHHHHH
Q 022677 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-G---DSAAMVVHGH----DTTLPITLE----EMLVHC 144 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dailv-G---dSla~~~lG~----~dt~~vtl~----eml~h~ 144 (293)
+.+|..++.+..++= .-.|+.|.+||||.|-+ + .-+....--+ .|-=.=|+| -.++.+
T Consensus 147 ~~mt~~eI~~ii~~f----------~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv 216 (362)
T PRK10605 147 RALELEEIPGIVNDF----------RQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVV 216 (362)
T ss_pred ccCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHH
Confidence 568888888766521 13789999999999954 2 1111110000 110011344 234555
Q ss_pred HHHHcccCCCeEEee---------CCCCCCCCCHHH-HHHHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHH-cC
Q 022677 145 RAVARGAKRPLLVGD---------LPFGTYESSTNQ-AVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVE-AG 208 (293)
Q Consensus 145 raV~Ra~~~p~vvaD---------mpfGsy~~s~e~-av~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~-~G 208 (293)
++|+++++..+|..= ++ +++ +.++ +++.+..+ ++.|+|.|.+-.+.. ...+..+++.+ .+
T Consensus 217 ~aVr~~vg~~~igvRis~~~~~~~~~-~G~--~~~e~~~~~~~~L-~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~ 292 (362)
T PRK10605 217 DAGIAEWGADRIGIRISPLGTFNNVD-NGP--NEEADALYLIEQL-GKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFH 292 (362)
T ss_pred HHHHHHcCCCeEEEEECCccccccCC-CCC--CHHHHHHHHHHHH-HHcCCCEEEeccccccCCccccHHHHHHHHHHCC
Confidence 666666554344432 22 233 6677 77776665 468999999986521 11223333332 35
Q ss_pred CcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec--CC-CHHHHHHHHHhc
Q 022677 209 IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE--CV-PPPVAAAATSAL 273 (293)
Q Consensus 209 IpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE--~v-p~e~a~~It~~l 273 (293)
+||++- | +.|.+.++++|++ -.||+|-+- .+ .+++...+.+..
T Consensus 293 ~pv~~~-----------G-----~~~~~~ae~~i~~------G~~D~V~~gR~~iadPd~~~k~~~g~ 338 (362)
T PRK10605 293 GVIIGA-----------G-----AYTAEKAETLIGK------GLIDAVAFGRDYIANPDLVARLQRKA 338 (362)
T ss_pred CCEEEe-----------C-----CCCHHHHHHHHHc------CCCCEEEECHHhhhCccHHHHHhcCC
Confidence 666632 2 1244444443332 238888875 22 246666665533
No 333
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=89.09 E-value=17 Score=32.81 Aligned_cols=149 Identities=16% Similarity=0.175 Sum_probs=85.0
Q ss_pred CCcEE-EECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE-eeC--CCCCCCCCHHHHHHHHHHHHHHhCCCE
Q 022677 112 GIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDL--PFGTYESSTNQAVDTAVRILKEGGMDA 187 (293)
Q Consensus 112 G~Dai-lvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv-aDm--pfGsy~~s~e~av~~A~rl~keaGa~g 187 (293)
|+|++ +-=|.+.. ...+.+....+.+++-.+.|++. .-. +=|.|+.+.++-++--.+.+ +.|++.
T Consensus 24 ~aD~vElR~D~~~~----------~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~-~~~~d~ 92 (225)
T cd00502 24 GADAVELRVDLLED----------PSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEYLELLEEAL-KLGPDY 92 (225)
T ss_pred CCCEEEEEEeeccc----------cchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHHHHHHHHHH-HHCCCE
Confidence 88998 42255321 11455666777777766677655 222 22456666666655544455 578999
Q ss_pred EEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCCH---H
Q 022677 188 IKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPP---P 264 (293)
Q Consensus 188 VkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~---e 264 (293)
|=+|-..+.....++.+.+.|.++.++.- + + .+|. ...++.+..+.+++.|||.+=+-..|. +
T Consensus 93 vDiEl~~~~~~~~~~~~~~~~~kiI~S~H------~-f------~~tp-~~~~l~~~~~~~~~~gadivKla~~~~~~~D 158 (225)
T cd00502 93 VDIELDSALLEELINSRKKGNTKIIGSYH------D-F------SGTP-SDEELVSRLEKMAALGADIVKIAVMANSIED 158 (225)
T ss_pred EEEEecchHHHHHHHHHHhCCCEEEEEec------c-C------CCCc-CHHHHHHHHHHHHHhCCCEEEEEecCCCHHH
Confidence 99995321134445555567899987632 1 1 1121 123344444555566999988877662 3
Q ss_pred HH--HHHHHhc----CCCEEEeCCCCC
Q 022677 265 VA--AAATSAL----QIPTIGIGAGPF 285 (293)
Q Consensus 265 ~a--~~It~~l----~iPtIGIGaG~~ 285 (293)
+. -.++.+. ++|+|.|+=|+.
T Consensus 159 ~~~ll~~~~~~~~~~~~p~i~~~MG~~ 185 (225)
T cd00502 159 NLRLLKFTRQVKNLYDIPLIAINMGEL 185 (225)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 22 1222222 469999998874
No 334
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=89.04 E-value=3.2 Score=38.94 Aligned_cols=90 Identities=18% Similarity=0.109 Sum_probs=62.1
Q ss_pred CCcEEEEecCCHH----HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCC-CCC
Q 022677 91 GEPITMVTAYDYP----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTY 165 (293)
Q Consensus 91 g~pi~m~tayD~~----SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpf-Gsy 165 (293)
++.++-+++.+.. .|+.++++|+|++++--.. | ....+-+++..|.+.|+. +.|+++=|.|. -++
T Consensus 66 ~~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~------y--~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~ 135 (279)
T cd00953 66 DKVIFQVGSLNLEESIELARAAKSFGIYAIASLPPY------Y--FPGIPEEWLIKYFTDISS--PYPTFIYNYPKATGY 135 (279)
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCc------C--CCCCCHHHHHHHHHHHHh--cCCEEEEeCccccCC
Confidence 3345555554432 5788999999999874221 1 011356899999999999 89999999995 235
Q ss_pred CCCHHHHHHHHHHHHHH-hCCCEEEeCCCC
Q 022677 166 ESSTNQAVDTAVRILKE-GGMDAIKLEGGS 194 (293)
Q Consensus 166 ~~s~e~av~~A~rl~ke-aGa~gVkiEgg~ 194 (293)
..+++.. .++.++ -.+.|||-..+.
T Consensus 136 ~l~~~~l----~~L~~~~p~vvgiK~s~~d 161 (279)
T cd00953 136 DINARMA----KEIKKAGGDIIGVKDTNED 161 (279)
T ss_pred CCCHHHH----HHHHhcCCCEEEEEeCccC
Confidence 5677654 467654 488999988765
No 335
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=88.98 E-value=0.91 Score=42.04 Aligned_cols=172 Identities=17% Similarity=0.187 Sum_probs=95.0
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHH----HcCCcEEEECchhhhhhccCCCCccCCHHH--HHHHHHHHH-----
Q 022677 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLD----SAGIDICLVGDSAAMVVHGHDTTLPITLEE--MLVHCRAVA----- 148 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~tayD~~SAriae----~AG~DailvGdSla~~~lG~~dt~~vtl~e--ml~h~raV~----- 148 (293)
-++++......+-.|+-.++-|..|..-++ +.|=+.+.+ -+.|+..+.+++ .....+...
T Consensus 15 v~p~l~~~l~~~v~i~e~G~LDgls~~eI~~~aP~~ge~vLvT---------rL~DG~~V~ls~~~v~~~lq~~i~~le~ 85 (221)
T PF07302_consen 15 VTPELTEILGEGVEIVEAGALDGLSREEIAALAPEPGEYVLVT---------RLRDGTQVVLSKKKVEPRLQACIAQLEA 85 (221)
T ss_pred hHHHHHHHcCCCceEEEeccCCCCCHHHHHHhCCCCCCceeEE---------EeCCCCEEEEEHHHHHHHHHHHHHHHHH
Confidence 345677766666468999999998877553 335444444 366777666653 223333211
Q ss_pred cccCCCeEE--eeCCCCCCC-----CCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEecccccee
Q 022677 149 RGAKRPLLV--GDLPFGTYE-----SSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQA 221 (293)
Q Consensus 149 Ra~~~p~vv--aDmpfGsy~-----~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~ 221 (293)
.|.+.-++. +++| .+. .-|++.+...+..+-..+--||-.=.- +......++-...+.+++ .
T Consensus 86 ~G~d~illlCTG~F~--~l~~~~~lleP~ril~~lV~al~~~~~vGVivP~~-eQ~~~~~~kW~~l~~~~~--------~ 154 (221)
T PF07302_consen 86 QGYDVILLLCTGEFP--GLTARNPLLEPDRILPPLVAALVGGHQVGVIVPLP-EQIAQQAEKWQPLGNPVV--------V 154 (221)
T ss_pred CCCCEEEEeccCCCC--CCCCCcceeehHHhHHHHHHHhcCCCeEEEEecCH-HHHHHHHHHHHhcCCCeE--------E
Confidence 223333333 4444 332 124566666555553222223322110 001112222233333333 1
Q ss_pred eeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHHhcCCCEE
Q 022677 222 ISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP--PPVAAAATSALQIPTI 278 (293)
Q Consensus 222 ~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp--~e~a~~It~~l~iPtI 278 (293)
....+ | ..+.+++.+.|+.+.+.|||.|++.|+- .+.-+.+.+.+++|++
T Consensus 155 a~asP-y------~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVl 206 (221)
T PF07302_consen 155 AAASP-Y------EGDEEELAAAARELAEQGADLIVLDCMGYTQEMRDIVQRALGKPVL 206 (221)
T ss_pred EEeCC-C------CCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHhCCCEE
Confidence 11111 1 1245689999999999999999999997 6777788888999998
No 336
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=88.95 E-value=10 Score=34.02 Aligned_cols=144 Identities=20% Similarity=0.203 Sum_probs=72.4
Q ss_pred HHHhhhCCCcEEEEec--CCHHH-----HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCe
Q 022677 84 LRQKHKNGEPITMVTA--YDYPS-----AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPL 155 (293)
Q Consensus 84 Lr~l~~~g~pi~m~ta--yD~~S-----Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~-~~p~ 155 (293)
++.+++.+. .+++-. +|.+. ++.+-++|+|++-+= ++.. .+|+..+....+.. +.-|
T Consensus 42 v~~l~~~~~-~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh--------~~~g------~~~l~~~~~~~~~~~~~v~ 106 (213)
T TIGR01740 42 IDELAKLNK-LIFLDLKFADIPNTVKLQYESKIKQGADMVNVH--------GVAG------SESVEAAKEAASEGGRGLL 106 (213)
T ss_pred HHHHHHcCC-CEEEEEeecchHHHHHHHHHHHHhcCCCEEEEc--------CCCC------HHHHHHHHHHhhcCCCeEE
Confidence 444444443 455666 88874 444667899999762 2111 24444333333322 2236
Q ss_pred EEeeCCCC-C--CCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCccccc
Q 022677 156 LVGDLPFG-T--YESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (293)
Q Consensus 156 vvaDmpfG-s--y~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqG 232 (293)
++++|-.- + ++.+..+.+..-.+..++.|.+|+-.- +..++.+.+ .+|. .....+|.+.||
T Consensus 107 ~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v~~------~~~~~~ir~----~~~~------~~~vtPGI~~~g 170 (213)
T TIGR01740 107 AVTELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPVCS------AEEAKEIRK----FTGD------FLILTPGIRLQS 170 (213)
T ss_pred EEEcCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEEeC------HHHHHHHHH----hcCC------ceEEeCCcCCCC
Confidence 67776531 1 233443433333344556777776432 222333332 1211 112356888887
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEec
Q 022677 233 KNVTSAVKVVETALALQEVGCFSVVLE 259 (293)
Q Consensus 233 rt~~~a~e~l~rA~a~eeAGA~~IvlE 259 (293)
-+..+ .+-.-..+.+.++|||.+++=
T Consensus 171 ~~~~d-q~~~~~~~~~~~~Gad~iVvG 196 (213)
T TIGR01740 171 KGADD-QQRVVTLEDAKEAGADVIIVG 196 (213)
T ss_pred CCcCC-ccccCCHHHHHHcCCCEEEEC
Confidence 33211 122234567789999988764
No 337
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=88.88 E-value=3 Score=39.12 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=63.9
Q ss_pred HHHHHhCCCEEEeCCCCC-----CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcC
Q 022677 178 RILKEGGMDAIKLEGGSP-----SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVG 252 (293)
Q Consensus 178 rl~keaGa~gVkiEgg~~-----~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAG 252 (293)
+..++-|.+.|-|.+|.- .....|+.+.+.|..|.--+|.-.. .........+.++.++...+||
T Consensus 78 ~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~----------~~~~~~~~~~~i~~~~~~LeAG 147 (237)
T TIGR03849 78 NECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSP----------EKDSELTPDDRIKLINKDLEAG 147 (237)
T ss_pred HHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCC----------cccccCCHHHHHHHHHHHHHCC
Confidence 366788999999999952 1335678888999999876664221 0001123578899999999999
Q ss_pred CcEEEecC---------------CCHHHHHHHHHhcCC
Q 022677 253 CFSVVLEC---------------VPPPVAAAATSALQI 275 (293)
Q Consensus 253 A~~IvlE~---------------vp~e~a~~It~~l~i 275 (293)
|+.|.+|+ +-.+++..|.++++.
T Consensus 148 A~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l~~ 185 (237)
T TIGR03849 148 ADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAENVDI 185 (237)
T ss_pred CcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhhCCh
Confidence 99999999 335777888887663
No 338
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=88.79 E-value=9.6 Score=36.34 Aligned_cols=131 Identities=23% Similarity=0.241 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHH--HhCCCEEEeCC--CCCCcHHHHHHHHHcCCcEE
Q 022677 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK--EGGMDAIKLEG--GSPSRITAARGIVEAGIAVM 212 (293)
Q Consensus 137 l~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~k--eaGa~gVkiEg--g~~~~~~~ikal~~~GIpV~ 212 (293)
+++.+.+++.. +.+ |+.|+=+|.- -++++...+.+- +.|+|++-+-. |.....+.++...+.|-
T Consensus 75 l~~~i~~l~~~----g~~-VilD~K~~DI----~nTv~~ya~a~~~~~~g~DavTVhp~~G~d~l~~~~~~~~~~~k--- 142 (278)
T PRK00125 75 LERTIAYLREA----GVL-VIADAKRGDI----GSTAEAYAKAAFESPLEADAVTVSPYMGFDSLEPYLEYAEEHGK--- 142 (278)
T ss_pred HHHHHHHHHHC----CCc-EEEEeecCCh----HHHHHHHHHHHhcCccCCcEEEECCcCCHHHHHHHHHHHHhcCC---
Confidence 45556555542 344 8899988633 344444444443 47899999985 33334454544433332
Q ss_pred Eeccccceeeeec-CCc---cc-ccCCHHHHHHHHHHHHHHHH-----cCCcEEEecCCCHHHHHHHHHhcC-CCEE--E
Q 022677 213 GHVGLTPQAISVL-GGF---RP-QGKNVTSAVKVVETALALQE-----VGCFSVVLECVPPPVAAAATSALQ-IPTI--G 279 (293)
Q Consensus 213 GHiGLtPq~~~~l-gGf---~v-qGrt~~~a~e~l~rA~a~ee-----AGA~~IvlE~vp~e~a~~It~~l~-iPtI--G 279 (293)
.++++-.+.|.- ..| .+ .|++ -.+.+.+++..+.+ +|.+++|+-+.-++.++.|.+.++ .|++ |
T Consensus 143 -~vfVlvlTSnp~s~~lq~~~~~~~~~--l~~~V~~~a~~~~~~~~~~~g~~G~VVgaT~p~e~~~iR~~~~~~~iL~PG 219 (278)
T PRK00125 143 -GVFVLCRTSNPGGSDLQFLRTADGRP--LYQHVADLAAALNNLGNCGYGSIGLVVGATFPPELAAVRKILGGMPLLIPG 219 (278)
T ss_pred -EEEEEEeCCCCCHHHHHhhhccCCCc--HHHHHHHHHHHHhccccCCCCCCEEEECCCCHHHHHHHHHhCCCCeEEeCC
Confidence 122222222211 011 11 2333 35677777776654 999999998876555688877754 3555 7
Q ss_pred eCC
Q 022677 280 IGA 282 (293)
Q Consensus 280 IGa 282 (293)
||+
T Consensus 220 iga 222 (278)
T PRK00125 220 IGA 222 (278)
T ss_pred cCC
Confidence 774
No 339
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.77 E-value=4 Score=37.34 Aligned_cols=88 Identities=24% Similarity=0.338 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCccccc-CCHHHHHHHHHHH
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG-KNVTSAVKVVETA 245 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqG-rt~~~a~e~l~rA 245 (293)
.+++++++-+..++ ++|++.|-+-=..+...+.++.|.+.. | ++ .+| .| .++. +.+
T Consensus 24 ~~~~~a~~i~~al~-~~Gi~~iEitl~~~~~~~~I~~l~~~~-p---~~--------~IG----AGTVl~~------~~a 80 (212)
T PRK05718 24 NKLEDAVPLAKALV-AGGLPVLEVTLRTPAALEAIRLIAKEV-P---EA--------LIG----AGTVLNP------EQL 80 (212)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEecCCccHHHHHHHHHHHC-C---CC--------EEE----EeeccCH------HHH
Confidence 46789988887777 689998766532223455677776521 2 10 011 12 1211 678
Q ss_pred HHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEE
Q 022677 246 LALQEVGCFSVVLECVPPPVAAAATSALQIPTI 278 (293)
Q Consensus 246 ~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtI 278 (293)
+...+|||+-++.++..+++++. +.+.++|.+
T Consensus 81 ~~a~~aGA~FivsP~~~~~vi~~-a~~~~i~~i 112 (212)
T PRK05718 81 AQAIEAGAQFIVSPGLTPPLLKA-AQEGPIPLI 112 (212)
T ss_pred HHHHHcCCCEEECCCCCHHHHHH-HHHcCCCEe
Confidence 88999999999999999988776 456889998
No 340
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=88.77 E-value=12 Score=33.72 Aligned_cols=108 Identities=20% Similarity=0.203 Sum_probs=72.6
Q ss_pred HHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHH-HhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccc
Q 022677 141 LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK-EGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTP 219 (293)
Q Consensus 141 l~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~k-eaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtP 219 (293)
-.+++.+...-+.-|+=+||=-| . .+.|.+++ +++ +.+.|||-=- -...++...+.|++..
T Consensus 38 k~ivk~lK~~gK~vfiHvDLv~G-l-~~~e~~i~----fi~~~~~pdGIIST-----k~~~i~~Akk~~~~aI------- 99 (181)
T COG1954 38 KEIVKKLKNRGKTVFIHVDLVEG-L-SNDEVAIE----FIKEVIKPDGIIST-----KSNVIKKAKKLGILAI------- 99 (181)
T ss_pred HHHHHHHHhCCcEEEEEeHHhcc-c-CCchHHHH----HHHHhccCCeeEEc-----cHHHHHHHHHcCCcee-------
Confidence 34445555556667777999985 6 36777755 444 3457887432 2456778888898876
Q ss_pred eeeeecCCcccccCCHHHHHHHHHHHHHH-HHcCCcEEE-ecCCCHHHHHHHHHhcCCCEE
Q 022677 220 QAISVLGGFRPQGKNVTSAVKVVETALAL-QEVGCFSVV-LECVPPPVAAAATSALQIPTI 278 (293)
Q Consensus 220 q~~~~lgGf~vqGrt~~~a~e~l~rA~a~-eeAGA~~Iv-lE~vp~e~a~~It~~l~iPtI 278 (293)
||...+. ..+++++... ++.++|+|. ++++-+++++.|++++++|+|
T Consensus 100 qR~FilD------------S~Al~~~~~~i~~~~pD~iEvLPGv~Pkvi~~i~~~t~~piI 148 (181)
T COG1954 100 QRLFILD------------SIALEKGIKQIEKSEPDFIEVLPGVMPKVIKEITEKTHIPII 148 (181)
T ss_pred eeeeeec------------HHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEE
Confidence 5543331 1335555444 458999875 466668999999999999999
No 341
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=88.75 E-value=23 Score=34.04 Aligned_cols=103 Identities=19% Similarity=0.196 Sum_probs=55.7
Q ss_pred HHHHHHhhhC-CCcE-EEEecCCH----HHHHHHHHcCCcEEEECchhhhhhccCCCCccCCH-HHHHHHHHHHHcccCC
Q 022677 81 LTHLRQKHKN-GEPI-TMVTAYDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL-EEMLVHCRAVARGAKR 153 (293)
Q Consensus 81 ~~~Lr~l~~~-g~pi-~m~tayD~----~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl-~eml~h~raV~Ra~~~ 153 (293)
++.++++++. +.|+ +-++..|. -.|+.++++|+|+|=+--|.-..--+. ..... +.+...+++|++.++.
T Consensus 88 ~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~---~g~~~~~~~~eiv~~v~~~~~i 164 (325)
T cd04739 88 LELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDI---SGAEVEQRYLDILRAVKSAVTI 164 (325)
T ss_pred HHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCc---ccchHHHHHHHHHHHHHhccCC
Confidence 3344444332 3443 34455554 357788899999995422211110111 11122 3345778889888888
Q ss_pred CeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 022677 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (293)
Q Consensus 154 p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg 193 (293)
| |++=+.- .+ .+..+. + +.++++|+++|-+-+.
T Consensus 165 P-v~vKl~p-~~-~~~~~~---a-~~l~~~Gadgi~~~nt 197 (325)
T cd04739 165 P-VAVKLSP-FF-SALAHM---A-KQLDAAGADGLVLFNR 197 (325)
T ss_pred C-EEEEcCC-Cc-cCHHHH---H-HHHHHcCCCeEEEEcC
Confidence 8 5555542 23 233333 3 3445799999988763
No 342
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=88.70 E-value=4.4 Score=38.99 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=50.9
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEE-ECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCC
Q 022677 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (293)
Q Consensus 83 ~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dail-vGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmp 161 (293)
.++.+|+.| ..+++++-+.--|+.++++|+|+|. .|.-.| ||.. ..+. ....-...|++..+.|++.+
T Consensus 128 ~i~~l~~~g-i~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAG----GH~g-~~~~--~~~~L~~~v~~~~~iPViaA--- 196 (330)
T PF03060_consen 128 VIERLHAAG-IKVIPQVTSVREARKAAKAGADAIVAQGPEAG----GHRG-FEVG--STFSLLPQVRDAVDIPVIAA--- 196 (330)
T ss_dssp HHHHHHHTT--EEEEEESSHHHHHHHHHTT-SEEEEE-TTSS----EE----SSG---HHHHHHHHHHH-SS-EEEE---
T ss_pred HHHHHHHcC-CccccccCCHHHHHHhhhcCCCEEEEeccccC----CCCC-cccc--ceeeHHHHHhhhcCCcEEEe---
Confidence 355666655 4688899999999999999999996 442221 2222 1111 23444566667777885554
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEe
Q 022677 162 FGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (293)
Q Consensus 162 fGsy~~s~e~av~~A~rl~keaGa~gVki 190 (293)
|+. .+.+.. . ..+ ..||+||.+
T Consensus 197 -GGI-~dg~~i-a---aal-~lGA~gV~~ 218 (330)
T PF03060_consen 197 -GGI-ADGRGI-A---AAL-ALGADGVQM 218 (330)
T ss_dssp -SS---SHHHH-H---HHH-HCT-SEEEE
T ss_pred -cCc-CCHHHH-H---HHH-HcCCCEeec
Confidence 556 345544 2 345 589999988
No 343
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=88.66 E-value=7.1 Score=38.93 Aligned_cols=110 Identities=20% Similarity=0.295 Sum_probs=69.0
Q ss_pred hhccCCCCccC---CHHHHHHHHHHHHcccC-CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC------
Q 022677 125 VVHGHDTTLPI---TLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------ 194 (293)
Q Consensus 125 ~~lG~~dt~~v---tl~eml~h~raV~Ra~~-~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~------ 194 (293)
.+.|+++.+.+ +++.++.+.+.+.+..+ .| +++-+- |.+ ++++-.+.+.++ +++|||++-|-=+.
T Consensus 82 n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~p-vIaSi~-~~~--s~~~~~~~a~~~-e~~GaD~iELNiSCPn~~~~ 156 (385)
T PLN02495 82 RVIGWQNIELISDRPFETMLAEFKQLKEEYPDRI-LIASIM-EEY--NKDAWEEIIERV-EETGVDALEINFSCPHGMPE 156 (385)
T ss_pred ccccccCcccccccCHHHHHHHHHHHHhhCCCCc-EEEEcc-CCC--CHHHHHHHHHHH-HhcCCCEEEEECCCCCCCCc
Confidence 45688887655 59999999888876664 46 676664 234 677777777665 57899998762110
Q ss_pred -------CCcHHHH----HHHHHc-CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 022677 195 -------PSRITAA----RGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258 (293)
Q Consensus 195 -------~~~~~~i----kal~~~-GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~Ivl 258 (293)
...++.+ +++.+. .|||+-= |+|. . .++.+-|++++++|||+|.+
T Consensus 157 r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vK--LsPn--------------~---t~i~~ia~aa~~~Gadgi~l 213 (385)
T PLN02495 157 RKMGAAVGQDCDLLEEVCGWINAKATVPVWAK--MTPN--------------I---TDITQPARVALKSGCEGVAA 213 (385)
T ss_pred CccchhhccCHHHHHHHHHHHHHhhcCceEEE--eCCC--------------h---hhHHHHHHHHHHhCCCEEEE
Confidence 0112233 333332 4666532 2231 1 23667788899999999985
No 344
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.66 E-value=6.3 Score=40.28 Aligned_cols=67 Identities=31% Similarity=0.433 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEe-eCCCCCCCCCHHHHHHHHHHHH
Q 022677 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG-DLPFGTYESSTNQAVDTAVRIL 180 (293)
Q Consensus 102 ~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vva-DmpfGsy~~s~e~av~~A~rl~ 180 (293)
.-.+...-++|+|+|.+ |+. +|+ ...+.||+ +.|++.-+..+|++ |.- +.|++ ..++
T Consensus 229 ~~~a~~Lv~aGvd~i~~-D~a----~~~----~~~~~~~i---~~ik~~~p~~~v~agnv~------t~~~a----~~l~ 286 (479)
T PRK07807 229 AAKARALLEAGVDVLVV-DTA----HGH----QEKMLEAL---RAVRALDPGVPIVAGNVV------TAEGT----RDLV 286 (479)
T ss_pred HHHHHHHHHhCCCEEEE-ecc----CCc----cHHHHHHH---HHHHHHCCCCeEEeeccC------CHHHH----HHHH
Confidence 34455555689999987 543 555 33444444 55655555444554 654 34666 4567
Q ss_pred HHhCCCEEEeC
Q 022677 181 KEGGMDAIKLE 191 (293)
Q Consensus 181 keaGa~gVkiE 191 (293)
++|||+||+=
T Consensus 287 -~aGad~v~vg 296 (479)
T PRK07807 287 -EAGADIVKVG 296 (479)
T ss_pred -HcCCCEEEEC
Confidence 6999999954
No 345
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=88.64 E-value=11 Score=39.38 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=59.9
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCC--CCCCCCCHHHHHHHHHHHHHH
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP--FGTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmp--fGsy~~s~e~av~~A~rl~ke 182 (293)
-+.+-++|+|.+-+-|++.-. +.|...++.++. .+.- +.+.+. +..| .+++..++.+.++. +
T Consensus 97 v~~a~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~-~G~~-v~~~i~~t~~p~-~~~~~~~~~~~~~~-~ 160 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDP------------RNLQAAIQAAKK-HGAH-AQGTISYTTSPV-HTLETYLDLAEELL-E 160 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHH-cCCE-EEEEEEeccCCC-CCHHHHHHHHHHHH-H
Confidence 356678899999887777442 445555555543 2322 222222 2223 47888888888776 7
Q ss_pred hCCCEEEeCCCCC-----CcHHHHHHHHHc-CCcEEEec
Q 022677 183 GGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGHV 215 (293)
Q Consensus 183 aGa~gVkiEgg~~-----~~~~~ikal~~~-GIpV~GHi 215 (293)
+||+.|.|-|-.. .+..++++|.+. ++|+--|.
T Consensus 161 ~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H~ 199 (582)
T TIGR01108 161 MGVDSICIKDMAGILTPKAAYELVSALKKRFGLPVHLHS 199 (582)
T ss_pred cCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEEEe
Confidence 9999999999532 234566666543 67777663
No 346
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=88.58 E-value=1.5 Score=40.67 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=41.2
Q ss_pred ccc-CCHHHHH-HHHHHHHHHH-HcCCcEEEecCCCH--HHHHHHHHhcCCCEEEe
Q 022677 230 PQG-KNVTSAV-KVVETALALQ-EVGCFSVVLECVPP--PVAAAATSALQIPTIGI 280 (293)
Q Consensus 230 vqG-rt~~~a~-e~l~rA~a~e-eAGA~~IvlE~vp~--e~a~~It~~l~iPtIGI 280 (293)
.-| |+.++.. .+++-++.++ +.||++|++.|-+. -....+.++.++|+|+|
T Consensus 36 PYG~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~a~~~~~l~~~~~iPii~i 91 (251)
T TIGR00067 36 PYGEKSPEFILEYVLELLTFLKERHNIKLLVVACNTASALALEDLQRNFDFPVVGV 91 (251)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHHCCCCEEee
Confidence 345 7777664 5557778998 99999999999884 34889999999999994
No 347
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=88.41 E-value=22 Score=33.22 Aligned_cols=111 Identities=19% Similarity=0.147 Sum_probs=69.8
Q ss_pred HHHhhhCCCcEE--EEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCC
Q 022677 84 LRQKHKNGEPIT--MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (293)
Q Consensus 84 Lr~l~~~g~pi~--m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmp 161 (293)
|+++.++|+|.. .++-.+...+.++..+|||.+++ |. --+.++++++...++++.. .+.+ .++=.|
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~i-D~---------EHg~~~~~~~~~~~~a~~~-~g~~-~~VRvp 70 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLAGFDWLLL-DG---------EHAPNDVLTFIPQLMALKG-SASA-PVVRPP 70 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEE-ec---------ccCCCCHHHHHHHHHHHhh-cCCC-cEEECC
Confidence 778888888764 35667888999999999999998 31 1235788888888888654 4444 234446
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHH-HcCCcEEEeccc
Q 022677 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGL 217 (293)
Q Consensus 162 fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~-~~GIpV~GHiGL 217 (293)
.. ++... .|.+ +.|+++|.+-- .+...+ +++++ ..--|=.|.-|+
T Consensus 71 ~~----~~~~i----~r~L-D~Ga~gIivP~-v~taee-a~~~v~a~kypP~G~Rg~ 116 (249)
T TIGR03239 71 WN----EPVII----KRLL-DIGFYNFLIPF-VESAEE-AERAVAATRYPPEGIRGV 116 (249)
T ss_pred CC----CHHHH----HHHh-cCCCCEEEecC-cCCHHH-HHHHHHHcCCCCCCcCCC
Confidence 53 33333 4677 79999997753 322333 34443 333344444333
No 348
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=88.33 E-value=5.2 Score=39.66 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=66.3
Q ss_pred CcCCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCe
Q 022677 77 QRVTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~-g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~ 155 (293)
...|.++|+.+.+. +-||++=..-+.-.|+.+.++|+|.|.|+-..+-.. |..+.+++.+.+..+++ . .+.|
T Consensus 213 ~~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~----~~~~a~~~~L~ei~~av-~-~~i~- 285 (367)
T TIGR02708 213 QKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQL----DGGPAAFDSLQEVAEAV-D-KRVP- 285 (367)
T ss_pred CCCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCC----CCCCcHHHHHHHHHHHh-C-CCCc-
Confidence 34677777776543 568888888889999999999999998876554222 34455566554433332 1 1355
Q ss_pred EEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 156 vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
|++| |+. .+..+++ +.+ ..||++|-+-
T Consensus 286 vi~d---GGI-r~g~Dv~----KaL-alGAd~V~ig 312 (367)
T TIGR02708 286 IVFD---SGV-RRGQHVF----KAL-ASGADLVALG 312 (367)
T ss_pred EEee---CCc-CCHHHHH----HHH-HcCCCEEEEc
Confidence 8888 555 4566663 556 4899999885
No 349
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=88.23 E-value=14 Score=34.62 Aligned_cols=143 Identities=17% Similarity=0.179 Sum_probs=78.9
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHc-cc-CCCeEEeeC--CCCCCCCCHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GA-KRPLLVGDL--PFGTYESSTNQAVDTAVRI 179 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~R-a~-~~p~vvaDm--pfGsy~~s~e~av~~A~rl 179 (293)
-++..+++|+|.|=+|... ++-++ ...+++++. +. +..++.... +. ++..-.+..+ +.
T Consensus 25 i~~~L~~~Gv~~IE~G~~~------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~----~~ 86 (273)
T cd07941 25 IARKLDELGVDYIEGGWPG------------SNPKD-TEFFARAKKLKLKHAKLAAFGSTRRA-GVKAEEDPNL----QA 86 (273)
T ss_pred HHHHHHHcCCCEEEecCCc------------CCHHH-HHHHHHHHHcCCCCcEEEEEeccccc-CCCccchHHH----HH
Confidence 3566889999999886421 12222 222344433 22 233333221 12 2221122233 33
Q ss_pred HHHhCCCEEEeCCCC-----------------CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHH
Q 022677 180 LKEGGMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVV 242 (293)
Q Consensus 180 ~keaGa~gVkiEgg~-----------------~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l 242 (293)
..+.|++.|.+-... +...+.++.+.+.|+.|+.- +. ....++ ++ +.+.++
T Consensus 87 a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~----~~--~~~d~~----~~--~~~~~~ 154 (273)
T cd07941 87 LLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFD----AE--HFFDGY----KA--NPEYAL 154 (273)
T ss_pred HHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEe----EE--eccccC----CC--CHHHHH
Confidence 447899999985321 11345677778899988742 11 111111 33 345667
Q ss_pred HHHHHHHHcCCcEEEec-----CCCH---HHHHHHHHhcC-CC
Q 022677 243 ETALALQEVGCFSVVLE-----CVPP---PVAAAATSALQ-IP 276 (293)
Q Consensus 243 ~rA~a~eeAGA~~IvlE-----~vp~---e~a~~It~~l~-iP 276 (293)
+.++++.++|++.|.+- ..|. ++.+.+.++++ +|
T Consensus 155 ~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~ 197 (273)
T cd07941 155 ATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVP 197 (273)
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCe
Confidence 77888889999999988 5564 45566666665 44
No 350
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=88.14 E-value=25 Score=33.59 Aligned_cols=124 Identities=25% Similarity=0.317 Sum_probs=72.3
Q ss_pred HHHHhhhCC--CcEEEEecCC------HHHHHHHHHcCCcEEEECchhhh-hhcc--------CCCCccCCHHHHHHHHH
Q 022677 83 HLRQKHKNG--EPITMVTAYD------YPSAVHLDSAGIDICLVGDSAAM-VVHG--------HDTTLPITLEEMLVHCR 145 (293)
Q Consensus 83 ~Lr~l~~~g--~pi~m~tayD------~~SAriae~AG~DailvGdSla~-~~lG--------~~dt~~vtl~eml~h~r 145 (293)
.|.+++..+ -.+.-+|+=| .-..+.+.++|+|+|=.|--.+- ++-| -.=...+|+++.++.++
T Consensus 7 ~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~ 86 (265)
T COG0159 7 KFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVE 86 (265)
T ss_pred HHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 455555443 5778888866 22334457899999955522110 0000 00013578999999999
Q ss_pred HHHc-ccCCCeEEeeCCCCCCCCCH--HHHHHHHHHHHHHhCCCEEEeCCCC-CCcHHHHHHHHHcCCcEE
Q 022677 146 AVAR-GAKRPLLVGDLPFGTYESST--NQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (293)
Q Consensus 146 aV~R-a~~~p~vvaDmpfGsy~~s~--e~av~~A~rl~keaGa~gVkiEgg~-~~~~~~ikal~~~GIpV~ 212 (293)
.++. ....|.+. | +| .|+ ...++.=.+..+++|++|+-+=|=. ++..++.+...+.||...
T Consensus 87 ~~r~~~~~~Pivl--m---~Y-~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I 151 (265)
T COG0159 87 EIRAKGVKVPIVL--M---TY-YNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPI 151 (265)
T ss_pred HHHhcCCCCCEEE--E---Ee-ccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEE
Confidence 9984 46667444 1 22 122 2233332445668999999999853 234456666667777765
No 351
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=88.05 E-value=6.7 Score=38.35 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=56.8
Q ss_pred HHHHHhhhC-CCcEEE---EecCCHHHHHHHHHcCCcEEEECchhhhh------hc-------cCCCCccCCHHHHHHHH
Q 022677 82 THLRQKHKN-GEPITM---VTAYDYPSAVHLDSAGIDICLVGDSAAMV------VH-------GHDTTLPITLEEMLVHC 144 (293)
Q Consensus 82 ~~Lr~l~~~-g~pi~m---~tayD~~SAriae~AG~DailvGdSla~~------~l-------G~~dt~~vtl~eml~h~ 144 (293)
..++.+.+. +-|+.+ -+....-.|+.++++|+|+|-++...+.. .. .+.+...++.-+.+..
T Consensus 176 e~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~- 254 (352)
T PRK05437 176 DNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLE- 254 (352)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHH-
Confidence 344444443 567775 23477889999999999999885443311 01 1112223333333322
Q ss_pred HHHHcc-cCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 145 RAVARG-AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 145 raV~Ra-~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
+++. .+.| |+++ |+. .|..++ .+.+ ..||++|.+-
T Consensus 255 --i~~~~~~ip-via~---GGI-~~~~dv----~k~l-~~GAd~v~ig 290 (352)
T PRK05437 255 --ARSLLPDLP-IIAS---GGI-RNGLDI----AKAL-ALGADAVGMA 290 (352)
T ss_pred --HHHhcCCCe-EEEE---CCC-CCHHHH----HHHH-HcCCCEEEEh
Confidence 3333 3556 7787 667 477777 4566 4799999884
No 352
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=88.03 E-value=13 Score=35.14 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=83.3
Q ss_pred HHHHHHHHcCCcEE-EECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 103 ~SAriae~AG~Dai-lvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~k 181 (293)
-.|+.-+++|++.| +| |- |-+ . .+..+.|++.++.|+.++ |+- +. +++.+++
T Consensus 42 ~~A~~~~~~Ga~~lHvV-DL------g~~-----n----~~~i~~i~~~~~~~v~vG----GGI--r~----e~v~~~l- 94 (253)
T TIGR02129 42 YYAKLYKDDGVKGCHVI-ML------GPN-----N----DDAAKEALHAYPGGLQVG----GGI--ND----TNAQEWL- 94 (253)
T ss_pred HHHHHHHHcCCCEEEEE-EC------CCC-----c----HHHHHHHHHhCCCCEEEe----CCc--CH----HHHHHHH-
Confidence 47888899999999 56 54 333 2 244566777777774443 455 22 3446788
Q ss_pred HhCCCEEEeCCCC----CCcHHHHHHHHHcCCcEEEeccccceeeee---cCCccc--ccCCHHHHHHHH-HHHHHHHHc
Q 022677 182 EGGMDAIKLEGGS----PSRITAARGIVEAGIAVMGHVGLTPQAISV---LGGFRP--QGKNVTSAVKVV-ETALALQEV 251 (293)
Q Consensus 182 eaGa~gVkiEgg~----~~~~~~ikal~~~GIpV~GHiGLtPq~~~~---lgGf~v--qGrt~~~a~e~l-~rA~a~eeA 251 (293)
++||+-|-|-... ...+..++.+.+ .+|-=.++---+.. .|+|++ .|-......+++ +-++.|++.
T Consensus 95 ~aGa~rVvIGS~av~~~~i~~~~~~~i~~----~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~ 170 (253)
T TIGR02129 95 DEGASHVIVTSWLFTKGKFDLKRLKEIVS----LVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY 170 (253)
T ss_pred HcCCCEEEECcHHHhCCCCCHHHHHHHHH----HhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh
Confidence 6999999994311 012445666655 22210011111111 234443 332221222344 556666666
Q ss_pred CCcEEEe---------cCCCHHHHHHHHHhcCCCEEEeC
Q 022677 252 GCFSVVL---------ECVPPPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 252 GA~~Ivl---------E~vp~e~a~~It~~l~iPtIGIG 281 (293)
|--|++ .++.-++.+.+++.+++|+|.=|
T Consensus 171 -~~~il~TdI~rDGtl~G~dlel~~~l~~~~~ipVIASG 208 (253)
T TIGR02129 171 -CDEFLIHAADVEGLCKGIDEELVSKLGEWSPIPITYAG 208 (253)
T ss_pred -CCEEEEeeecccCccccCCHHHHHHHHhhCCCCEEEEC
Confidence 666665 34446899999999999999544
No 353
>PRK00915 2-isopropylmalate synthase; Validated
Probab=87.98 E-value=15 Score=37.66 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=81.4
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
-|+.++++|+|.|=+|. |...+-.++. ++.+.+..+.+-+.+=.. . . .+-++.+.+.++++
T Consensus 31 ia~~L~~~Gv~~IE~G~---------p~~s~~d~~~----v~~i~~~~~~~~i~a~~r---~--~-~~did~a~~a~~~~ 91 (513)
T PRK00915 31 IAKQLERLGVDVIEAGF---------PASSPGDFEA----VKRIARTVKNSTVCGLAR---A--V-KKDIDAAAEALKPA 91 (513)
T ss_pred HHHHHHHcCCCEEEEcC---------CCCChHHHHH----HHHHHhhCCCCEEEEEcc---C--C-HHHHHHHHHHhhcC
Confidence 57788999999998874 2222222333 355544333332332211 1 1 23456566667678
Q ss_pred CCCEEEeCCCCC-----------------CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHH
Q 022677 184 GMDAIKLEGGSP-----------------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (293)
Q Consensus 184 Ga~gVkiEgg~~-----------------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~ 246 (293)
|++.|.+-.... .+.+.++.+.+.|..|+ +.+. . -+|+ +-+.+++-++
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~----f~~e-----d----~~r~--d~~~l~~~~~ 156 (513)
T PRK00915 92 EAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE----FSAE-----D----ATRT--DLDFLCRVVE 156 (513)
T ss_pred CCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE----EEeC-----C----CCCC--CHHHHHHHHH
Confidence 998888876531 12356677788888875 2222 1 2344 3456778888
Q ss_pred HHHHcCCcEEEec-----CCCH---HHHHHHHHhcC
Q 022677 247 ALQEVGCFSVVLE-----CVPP---PVAAAATSALQ 274 (293)
Q Consensus 247 a~eeAGA~~IvlE-----~vp~---e~a~~It~~l~ 274 (293)
++.++||+.|.+. +.|. ++++.+.+.++
T Consensus 157 ~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~ 192 (513)
T PRK00915 157 AAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVP 192 (513)
T ss_pred HHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCC
Confidence 8899999999987 2343 45555666554
No 354
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=87.90 E-value=22 Score=34.99 Aligned_cols=113 Identities=14% Similarity=0.053 Sum_probs=68.8
Q ss_pred EEEEecCCHHHHHHHHHcCCcEEEECchhhhh----hccCCCCccCCHHHHHHHHHHHHc---ccCCCeEEeeCCCCCCC
Q 022677 94 ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV----VHGHDTTLPITLEEMLVHCRAVAR---GAKRPLLVGDLPFGTYE 166 (293)
Q Consensus 94 i~m~tayD~~SAriae~AG~DailvGdSla~~----~lG~~dt~~vtl~eml~h~raV~R---a~~~p~vvaDmpfGsy~ 166 (293)
+..++-...--...+-++|+|.+-+..+.+-. .+| .|.+|.+..++...+ ..+.. +..+.|+++.
T Consensus 70 i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~------~s~~~~l~~~~~~v~~a~~~G~~-v~~~~ed~~r- 141 (378)
T PRK11858 70 ILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLK------KTREEVLERMVEAVEYAKDHGLY-VSFSAEDASR- 141 (378)
T ss_pred EEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHCCCe-EEEEeccCCC-
Confidence 34444333445566678899988654443321 333 567777765554333 22333 6678888654
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHHc-CCcEEEec
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGHV 215 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~~-GIpV~GHi 215 (293)
.+++..++.+.++. +.|++.|.|-|-.. ....+++.+.+. ++|+--|.
T Consensus 142 ~~~~~l~~~~~~~~-~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~ 195 (378)
T PRK11858 142 TDLDFLIEFAKAAE-EAGADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVHC 195 (378)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 78888888876665 79999999998532 233455556543 56666563
No 355
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=87.74 E-value=22 Score=35.02 Aligned_cols=151 Identities=19% Similarity=0.297 Sum_probs=85.2
Q ss_pred HHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 022677 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 102 ~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~k 181 (293)
.--|+.++++|+|.|=+|. ... .--.|.. -.-+|.+..++.+. ....+.++ | +.+ -++ +.+
T Consensus 71 i~ia~~L~~~GV~~IEvGs-~vs-pk~vPqm--ad~~ev~~~i~~~~-~~~~~~l~---~------n~~-die---~A~- 131 (347)
T PLN02746 71 VELIQRLVSSGLPVVEATS-FVS-PKWVPQL--ADAKDVMAAVRNLE-GARFPVLT---P------NLK-GFE---AAI- 131 (347)
T ss_pred HHHHHHHHHcCCCEEEECC-CcC-ccccccc--ccHHHHHHHHHhcc-CCceeEEc---C------CHH-HHH---HHH-
Confidence 4457888999999999983 311 0111111 13335555554422 22222121 2 222 323 234
Q ss_pred HhCCCEEEeCCCC-----------------CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHH
Q 022677 182 EGGMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVET 244 (293)
Q Consensus 182 eaGa~gVkiEgg~-----------------~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~r 244 (293)
++|++.|.+--.. +...+.++...+.|+.|.+++.. .+ |.-..+++ +.+.+++-
T Consensus 132 ~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~------~f-g~p~~~r~--~~~~l~~~ 202 (347)
T PLN02746 132 AAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSC------VV-GCPIEGPV--PPSKVAYV 202 (347)
T ss_pred HcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe------ee-cCCccCCC--CHHHHHHH
Confidence 6899998887321 11235677778999999887531 01 11113444 45678888
Q ss_pred HHHHHHcCCcEEEec-----CCCH---HHHHHHHHhcCCCEEEe
Q 022677 245 ALALQEVGCFSVVLE-----CVPP---PVAAAATSALQIPTIGI 280 (293)
Q Consensus 245 A~a~eeAGA~~IvlE-----~vp~---e~a~~It~~l~iPtIGI 280 (293)
++++.++||+.|.+- +.|. ++.+.+.++++.+.|++
T Consensus 203 ~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~ 246 (347)
T PLN02746 203 AKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAV 246 (347)
T ss_pred HHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 999999999999986 2343 45556666665434555
No 356
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=87.60 E-value=1.4 Score=43.43 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCCC---HHHHHHHHHhcCCCEEE
Q 022677 236 TSAVKVVETALALQEVGCFSVVLECVP---PPVAAAATSALQIPTIG 279 (293)
Q Consensus 236 ~~a~e~l~rA~a~eeAGA~~IvlE~vp---~e~a~~It~~l~iPtIG 279 (293)
.+.+..+++-++|++||||.+=+-+.. .+..++|.+++++|+++
T Consensus 33 ~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVa 79 (361)
T COG0821 33 ADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVA 79 (361)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 367899999999999999999988876 36778899999999985
No 357
>PRK12999 pyruvate carboxylase; Reviewed
Probab=87.50 E-value=17 Score=41.07 Aligned_cols=162 Identities=16% Similarity=0.171 Sum_probs=91.6
Q ss_pred HHHHHHHHc--CCcEEEECchhhh-hhccCCCCccCCHHHHHHHHHHHHcccCCCeEE-e-e-CCCCCCCCCHHHHHHHH
Q 022677 103 PSAVHLDSA--GIDICLVGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-G-D-LPFGTYESSTNQAVDTA 176 (293)
Q Consensus 103 ~SAriae~A--G~DailvGdSla~-~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv-a-D-mpfGsy~~s~e~av~~A 176 (293)
.-|...+++ |++.|=+|..... +++.|-+-. +|+.+ ...|....-++...+. + + ..|-.| +++.++--
T Consensus 559 ~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~--p~erl-~~~r~~~~~~~~q~l~Rg~n~vgy~~y---p~~v~~~~ 632 (1146)
T PRK12999 559 RIAPATARLLPNLFSLEMWGGATFDVAYRFLKED--PWERL-AELREAAPNVLFQMLLRGSNAVGYTNY---PDNVVRAF 632 (1146)
T ss_pred HHHHHHHHHhCCCCEEEeeCCcchhhhccccCCC--HHHHH-HHHHHhCCCCeEEEEecccccccccCC---CchHHHHH
Confidence 357788899 9999966533322 344443332 34433 3333322112222222 1 1 234444 45555543
Q ss_pred HHHHHHhCCCEEEeCCCCCC---cHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCC
Q 022677 177 VRILKEGGMDAIKLEGGSPS---RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGC 253 (293)
Q Consensus 177 ~rl~keaGa~gVkiEgg~~~---~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA 253 (293)
++...+.|++.+.|=|.... ....++++.++|.-..+-++.+ |+..--.++....+-.++-++.++++||
T Consensus 633 i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~yt-------g~~~d~~~~~~~~~~~~~~a~~l~~~Ga 705 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYT-------GDILDPARAKYDLDYYVDLAKELEKAGA 705 (1146)
T ss_pred HHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEE-------ecCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 44545789999999987532 2345666677776444333322 1111112333355678889999999999
Q ss_pred cEEEecC-----CC---HHHHHHHHHhcCCCE
Q 022677 254 FSVVLEC-----VP---PPVAAAATSALQIPT 277 (293)
Q Consensus 254 ~~IvlE~-----vp---~e~a~~It~~l~iPt 277 (293)
+.|.+-= .| .++++.+.+++++|+
T Consensus 706 ~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi 737 (1146)
T PRK12999 706 HILAIKDMAGLLKPAAAYELVSALKEEVDLPI 737 (1146)
T ss_pred CEEEECCccCCCCHHHHHHHHHHHHHHcCCeE
Confidence 9999872 24 267777888888884
No 358
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=87.49 E-value=7.7 Score=37.84 Aligned_cols=64 Identities=16% Similarity=0.334 Sum_probs=42.7
Q ss_pred HHHHHHcC--CcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEe-eCCCCCCCCCHHHHHHHHHHHHH
Q 022677 105 AVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG-DLPFGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 105 Ariae~AG--~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vva-DmpfGsy~~s~e~av~~A~rl~k 181 (293)
....-++| .|.|.+ |+. +|+... +++..+.+++..+.|++++ .. .+.+.+ .+++
T Consensus 99 ~~~lv~a~~~~d~i~~-D~a----hg~s~~-------~~~~i~~i~~~~p~~~vi~GnV------~t~e~a----~~l~- 155 (321)
T TIGR01306 99 VTQLAEEALTPEYITI-DIA----HGHSNS-------VINMIKHIKTHLPDSFVIAGNV------GTPEAV----RELE- 155 (321)
T ss_pred HHHHHhcCCCCCEEEE-eCc----cCchHH-------HHHHHHHHHHhCCCCEEEEecC------CCHHHH----HHHH-
Confidence 33344567 688887 543 565443 4677788888888886664 34 244555 4566
Q ss_pred HhCCCEEEeC
Q 022677 182 EGGMDAIKLE 191 (293)
Q Consensus 182 eaGa~gVkiE 191 (293)
++||++|++-
T Consensus 156 ~aGad~I~V~ 165 (321)
T TIGR01306 156 NAGADATKVG 165 (321)
T ss_pred HcCcCEEEEC
Confidence 7999999987
No 359
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=87.32 E-value=15 Score=35.86 Aligned_cols=137 Identities=16% Similarity=0.204 Sum_probs=87.2
Q ss_pred HHHHHHHHHcccCCCeEEeeCCCCCCC------------CC----HHHHHHHHHHHHHHhCCCEEEeCCCC-CCcHHHHH
Q 022677 140 MLVHCRAVARGAKRPLLVGDLPFGTYE------------SS----TNQAVDTAVRILKEGGMDAIKLEGGS-PSRITAAR 202 (293)
Q Consensus 140 ml~h~raV~Ra~~~p~vvaDmpfGsy~------------~s----~e~av~~A~rl~keaGa~gVkiEgg~-~~~~~~ik 202 (293)
+...++.|++..+.-+|++|.=+=.|. .+ .+...+.|+... ++|||.|--.|-- .++..+.+
T Consensus 96 v~~air~iK~~~p~l~vi~DVclc~YT~hGHcGil~~~~idND~Tl~~L~~~Avs~A-~AGADiVAPSdMMDGrV~aIR~ 174 (320)
T cd04823 96 VCRAIRAIKEAFPELGIITDVALDPYTSHGHDGIVRDGGILNDETVEVLCKQALVQA-EAGADIVAPSDMMDGRIGAIRE 174 (320)
T ss_pred HHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeccCCcCcCHHHHHHHHHHHHHHH-HhCCCEEEcccchhhHHHHHHH
Confidence 456677888888877788987443331 12 233445555555 7999999877521 12456677
Q ss_pred HHHHcCCcEEEeccccceee---e-ecCCccc-------cc-C-----CHHHHHHHHHHHHHHHHcCCcEEEec-CCC-H
Q 022677 203 GIVEAGIAVMGHVGLTPQAI---S-VLGGFRP-------QG-K-----NVTSAVKVVETALALQEVGCFSVVLE-CVP-P 263 (293)
Q Consensus 203 al~~~GIpV~GHiGLtPq~~---~-~lgGf~v-------qG-r-----t~~~a~e~l~rA~a~eeAGA~~IvlE-~vp-~ 263 (293)
+|.++|.. |+++.+-+. + ..|=||- .| | +.....|+++.+..=.+=|||+|.+. ++| -
T Consensus 175 aLd~~g~~---~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKPal~YL 251 (320)
T cd04823 175 ALDAEGFT---NVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVMVKPGMPYL 251 (320)
T ss_pred HHHHCCCC---CCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHH
Confidence 78887752 233333211 1 1122221 12 1 11234788999888899999999986 788 6
Q ss_pred HHHHHHHHhcCCCEEEe
Q 022677 264 PVAAAATSALQIPTIGI 280 (293)
Q Consensus 264 e~a~~It~~l~iPtIGI 280 (293)
++++.+.++.++|+...
T Consensus 252 DIi~~~k~~~~lPvaaY 268 (320)
T cd04823 252 DIIRRVKDEFGVPTFAY 268 (320)
T ss_pred HHHHHHHHhcCCCEEEE
Confidence 99999999999999864
No 360
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=87.32 E-value=6.3 Score=36.62 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=61.2
Q ss_pred HHHHhhhCCCcEE--EEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC
Q 022677 83 HLRQKHKNGEPIT--MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (293)
Q Consensus 83 ~Lr~l~~~g~pi~--m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm 160 (293)
.|+++.++|+|+. .++-.+...+.++..+|+|.+.+ | .+++. .+++++...+++... .+.. +++=+
T Consensus 2 ~lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~i-D--------lEH~~-~~~~~~~~~~~a~~~-~g~~-~~VRv 69 (249)
T TIGR02311 2 QFKQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLI-D--------GEHAP-NDVRTILSQLQALAP-YPSS-PVVRP 69 (249)
T ss_pred hHHHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEE-e--------ccCCC-CCHHHHHHHHHHHHh-cCCC-cEEEC
Confidence 3788888899864 34667788888888999999987 3 24443 588888887777643 2333 45556
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 161 pfGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
|..++ .. +.+.+ +.|++||.+--
T Consensus 70 ~~~~~----~~----i~~~L-d~Ga~gIivP~ 92 (249)
T TIGR02311 70 AIGDP----VL----IKQLL-DIGAQTLLVPM 92 (249)
T ss_pred CCCCH----HH----HHHHh-CCCCCEEEecC
Confidence 65333 32 35677 79999998753
No 361
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=87.21 E-value=1.9 Score=42.45 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCcEEE---ECc--hhhhhhccCCCC---ccCCHHHHHHHHHHHHccc---CCCeEEeeCCCCCCCCCHHH
Q 022677 103 PSAVHLDSAGIDICL---VGD--SAAMVVHGHDTT---LPITLEEMLVHCRAVARGA---KRPLLVGDLPFGTYESSTNQ 171 (293)
Q Consensus 103 ~SAriae~AG~Dail---vGd--Sla~~~lG~~dt---~~vtl~eml~h~raV~Ra~---~~p~vvaDmpfGsy~~s~e~ 171 (293)
..||++.+.|+|+|= +|| +...+.+|..+. ..++.+...+.++.+.++. +.|+|++-=| ..+.++
T Consensus 221 ~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~----k~~~~e 296 (348)
T PRK09250 221 QANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGA----SKGEDD 296 (348)
T ss_pred HHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCC----CCCHHH
Confidence 458999999999994 665 333344454443 4456666777788888876 7897777533 346788
Q ss_pred HHHHHHHH---HHHhCCCEEEe
Q 022677 172 AVDTAVRI---LKEGGMDAIKL 190 (293)
Q Consensus 172 av~~A~rl---~keaGa~gVki 190 (293)
.++.+... + ++|+.|+-+
T Consensus 297 ~L~~v~~a~~~i-~aGa~Gv~i 317 (348)
T PRK09250 297 LLDAVRTAVINK-RAGGMGLII 317 (348)
T ss_pred HHHHHHHHHHhh-hcCCcchhh
Confidence 88887777 7 588888765
No 362
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=87.19 E-value=33 Score=33.96 Aligned_cols=186 Identities=12% Similarity=0.105 Sum_probs=110.9
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHH----HHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC-CCeEEe
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVG 158 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAri----ae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~-~p~vva 158 (293)
|+.-++++--+-..|+||..+++. ||+.+.++|+--....... ..++.+...++..++..+ .| |+.
T Consensus 8 L~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~--------~g~~~~~~~~~~~ae~~~~VP-Val 78 (347)
T TIGR01521 8 LDHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSY--------AGAPFLRHLILAAIEEYPHIP-VVM 78 (347)
T ss_pred HHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhh--------CCHHHHHHHHHHHHHhCCCCc-EEE
Confidence 445556677788999999999874 6777999998432222222 235666777777777675 67 777
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------------CcHHHHHHHHHcCCcEEEeccccceeeee
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP--------------SRITAARGIVEAGIAVMGHVGLTPQAISV 224 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~--------------~~~~~ikal~~~GIpV~GHiGLtPq~~~~ 224 (293)
-|.-| .|.+.. .+.+ ++|..+|.+-+... ....+++..-..|+.|=|=+|-++.....
T Consensus 79 HLDHg---~~~e~i----~~Ai-~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~ 150 (347)
T TIGR01521 79 HQDHG---NSPATC----QRAI-QLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETG 150 (347)
T ss_pred ECCCC---CCHHHH----HHHH-HcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccccccc
Confidence 77754 355554 4557 58999999976531 12245666678999998888855433211
Q ss_pred cC----CcccccC-CHHHHHHHHHHHHHHH-HcCCcEEEec--------------C---CCHHHHHHHHHhc-CCCEEEe
Q 022677 225 LG----GFRPQGK-NVTSAVKVVETALALQ-EVGCFSVVLE--------------C---VPPPVAAAATSAL-QIPTIGI 280 (293)
Q Consensus 225 lg----Gf~vqGr-t~~~a~e~l~rA~a~e-eAGA~~IvlE--------------~---vp~e~a~~It~~l-~iPtIGI 280 (293)
.+ |...-+. +.+..-.--+.|+.+. +-|+|+|=+= - +.-+..+.|.+.+ ++|+. +
T Consensus 151 ~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLV-L 229 (347)
T TIGR01521 151 MGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLV-M 229 (347)
T ss_pred ccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEE-E
Confidence 11 1000000 0000000113444444 3588876421 1 3336779999999 69964 6
Q ss_pred CCCCCCC
Q 022677 281 GAGPFCS 287 (293)
Q Consensus 281 GaG~~~d 287 (293)
-+|+++.
T Consensus 230 HGgSG~p 236 (347)
T TIGR01521 230 HGSSSVP 236 (347)
T ss_pred eCCCCCc
Confidence 6666653
No 363
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=86.94 E-value=32 Score=33.61 Aligned_cols=77 Identities=19% Similarity=0.381 Sum_probs=46.9
Q ss_pred CcEEEEec----CCHHHHHHHHHcCC--cEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE-eeCCCCC
Q 022677 92 EPITMVTA----YDYPSAVHLDSAGI--DICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGT 164 (293)
Q Consensus 92 ~pi~m~ta----yD~~SAriae~AG~--DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv-aDmpfGs 164 (293)
..++-..+ -|+-.+...-+||. |+|.+ |+. +|+. -.+.|+ .+.|++..+..+|+ .|.-
T Consensus 85 ~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~i-D~a----~gh~----~~~~e~---I~~ir~~~p~~~vi~g~V~--- 149 (326)
T PRK05458 85 GLIASISVGVKDDEYDFVDQLAAEGLTPEYITI-DIA----HGHS----DSVINM---IQHIKKHLPETFVIAGNVG--- 149 (326)
T ss_pred ccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEE-ECC----CCch----HHHHHH---HHHHHhhCCCCeEEEEecC---
Confidence 34554443 45567777778855 99988 433 2322 223344 56777777644455 4754
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 165 YESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 165 y~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
|.|++ .+++ ++|+|++++-
T Consensus 150 ---t~e~a----~~l~-~aGad~i~vg 168 (326)
T PRK05458 150 ---TPEAV----RELE-NAGADATKVG 168 (326)
T ss_pred ---CHHHH----HHHH-HcCcCEEEEC
Confidence 45666 4566 6999999965
No 364
>PRK15108 biotin synthase; Provisional
Probab=86.92 E-value=11 Score=36.70 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=68.6
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhC
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaG 184 (293)
|+.+.+.|++-+..|. |..+....+++.+...++.+++ .+.. +++ -.| + .+.++. +.++++|
T Consensus 85 a~~~~~~G~~~i~i~~-------~g~~p~~~~~e~i~~~i~~ik~-~~i~-v~~--s~G-~-ls~e~l-----~~LkeAG 146 (345)
T PRK15108 85 ARKAKAAGSTRFCMGA-------AWKNPHERDMPYLEQMVQGVKA-MGLE-TCM--TLG-T-LSESQA-----QRLANAG 146 (345)
T ss_pred HHHHHHcCCCEEEEEe-------cCCCCCcchHHHHHHHHHHHHh-CCCE-EEE--eCC-c-CCHHHH-----HHHHHcC
Confidence 4456677888775431 1123334577888888888864 3333 322 243 4 565555 4466899
Q ss_pred CCEEEe--CCC----C--------CCcHHHHHHHHHcCCcEEEe--ccccceeeeecCCcccccCCHHHHHHHHHHHHHH
Q 022677 185 MDAIKL--EGG----S--------PSRITAARGIVEAGIAVMGH--VGLTPQAISVLGGFRPQGKNVTSAVKVVETALAL 248 (293)
Q Consensus 185 a~gVki--Egg----~--------~~~~~~ikal~~~GIpV~GH--iGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~ 248 (293)
++.+++ |.. . +.....++.+.+.|+++|.| +| .|.|.++..+.+...+.+
T Consensus 147 ld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~G--------------lgEt~ed~v~~~~~l~~l 212 (345)
T PRK15108 147 LDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVG--------------LGETVKDRAGLLLQLANL 212 (345)
T ss_pred CCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEe--------------CCCCHHHHHHHHHHHHhc
Confidence 997766 221 1 11345677778899999976 24 366776666666666666
Q ss_pred H
Q 022677 249 Q 249 (293)
Q Consensus 249 e 249 (293)
+
T Consensus 213 ~ 213 (345)
T PRK15108 213 P 213 (345)
T ss_pred c
Confidence 4
No 365
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=86.90 E-value=11 Score=36.97 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=64.4
Q ss_pred CCHHHHHHhhhC-CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcc--cCCCe
Q 022677 79 VTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG--AKRPL 155 (293)
Q Consensus 79 ~t~~~Lr~l~~~-g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra--~~~p~ 155 (293)
.+..+++.+.+. +.|+++=++-+.-.|+.+.++|+|.|.++...|... |+..-|++ .+..++...+. -+.|
T Consensus 200 ~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~----d~~~~~~~-~L~~i~~~~~~~~~~~~- 273 (344)
T cd02922 200 LTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQL----DTAPAPIE-VLLEIRKHCPEVFDKIE- 273 (344)
T ss_pred CCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccC----CCCCCHHH-HHHHHHHHHHHhCCCce-
Confidence 566777776643 468888899999999999999999998766555532 33222333 33333333222 2355
Q ss_pred EEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 156 vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
|++| |+. .+-.+++ +.+ ..||++|.+-
T Consensus 274 vi~~---GGI-r~G~Dv~----kal-aLGA~aV~iG 300 (344)
T cd02922 274 VYVD---GGV-RRGTDVL----KAL-CLGAKAVGLG 300 (344)
T ss_pred EEEe---CCC-CCHHHHH----HHH-HcCCCEEEEC
Confidence 8888 666 4566663 456 5899999884
No 366
>PRK08185 hypothetical protein; Provisional
Probab=86.69 E-value=28 Score=33.31 Aligned_cols=109 Identities=16% Similarity=0.252 Sum_probs=68.8
Q ss_pred CCcEEEE--ecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHH---cccCCCeE--EeeCCC-
Q 022677 91 GEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVA---RGAKRPLL--VGDLPF- 162 (293)
Q Consensus 91 g~pi~m~--tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~---Ra~~~p~v--vaDmpf- 162 (293)
.-|+++= -+.|+-.-+-+=++||+.+.. |...++++|-+..++.|. +..+.++= ++-++.
T Consensus 68 ~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~------------D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~ 135 (283)
T PRK08185 68 PVPFVIHLDHGATIEDVMRAIRCGFTSVMI------------DGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNT 135 (283)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEE------------eCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCc
Confidence 3454433 345655666666778877776 334579999999999988 44444421 122221
Q ss_pred ------C-C---CCCCHHHHHHHHHHHHHHhCCCEEEe---------CCC--CCCcHHHHHHHHHc-CCcEEEecc
Q 022677 163 ------G-T---YESSTNQAVDTAVRILKEGGMDAIKL---------EGG--SPSRITAARGIVEA-GIAVMGHVG 216 (293)
Q Consensus 163 ------G-s---y~~s~e~av~~A~rl~keaGa~gVki---------Egg--~~~~~~~ikal~~~-GIpV~GHiG 216 (293)
+ + | .+++++ .+++++.|+|.+=+ +++ .....++++.|.+. +||++-|=|
T Consensus 136 e~~~~~~~~~~~~-t~peea----~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGg 206 (283)
T PRK08185 136 GTSIEGGVSEIIY-TDPEQA----EDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGG 206 (283)
T ss_pred ccccccccccccC-CCHHHH----HHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECC
Confidence 1 1 4 478888 56888889999988 221 12345677777655 899999943
No 367
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=86.59 E-value=16 Score=35.68 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=78.6
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
-|+..+++|+|.|=+|. |...+ +| .+.++.+..-...+-+.+=.. .+.+ .++ ...++
T Consensus 27 ia~~L~~~Gv~~IEvG~---------p~~~~---~~-~e~i~~i~~~~~~~~v~~~~r-----~~~~-di~----~a~~~ 83 (363)
T TIGR02090 27 IARKLDELGVDVIEAGF---------PIASE---GE-FEAIKKISQEGLNAEICSLAR-----ALKK-DID----KAIDC 83 (363)
T ss_pred HHHHHHHcCCCEEEEeC---------CCCCh---HH-HHHHHHHHhcCCCcEEEEEcc-----cCHH-HHH----HHHHc
Confidence 46778999999998863 22221 22 244455554333443443322 1223 333 23368
Q ss_pred CCCEEEeCCCC-----------------CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHH
Q 022677 184 GMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (293)
Q Consensus 184 Ga~gVkiEgg~-----------------~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~ 246 (293)
|++.|.+-... +...+.++.+.+.|..|+..+ .. .+|+ +-+.+++-++
T Consensus 84 g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~----ed---------a~r~--~~~~l~~~~~ 148 (363)
T TIGR02090 84 GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA----ED---------ATRT--DIDFLIKVFK 148 (363)
T ss_pred CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE----ee---------cCCC--CHHHHHHHHH
Confidence 99999995442 113356677788898887432 11 1343 3457777788
Q ss_pred HHHHcCCcEEEecC-----CCH---HHHHHHHHhcCCC
Q 022677 247 ALQEVGCFSVVLEC-----VPP---PVAAAATSALQIP 276 (293)
Q Consensus 247 a~eeAGA~~IvlE~-----vp~---e~a~~It~~l~iP 276 (293)
++.++|++.|.+-- .|. ++++.+.+.+++|
T Consensus 149 ~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~ 186 (363)
T TIGR02090 149 RAEEAGADRINIADTVGVLTPQKMEELIKKLKENVKLP 186 (363)
T ss_pred HHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCce
Confidence 88999999998762 243 4445555555555
No 368
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=86.57 E-value=7.6 Score=39.95 Aligned_cols=69 Identities=16% Similarity=0.092 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 022677 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 102 ~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~k 181 (293)
..-+..+-++|+|+|.+. +++|+.+.. +...+.++...+.++.+ --|+- .+.+.+ ..++
T Consensus 244 ~~ra~~Lv~aGvd~i~vd-----~a~g~~~~~-------~~~i~~ir~~~~~~~~V---~aGnV-~t~e~a----~~li- 302 (502)
T PRK07107 244 AERVPALVEAGADVLCID-----SSEGYSEWQ-------KRTLDWIREKYGDSVKV---GAGNV-VDREGF----RYLA- 302 (502)
T ss_pred HHHHHHHHHhCCCeEeec-----CcccccHHH-------HHHHHHHHHhCCCCceE---Eeccc-cCHHHH----HHHH-
Confidence 466777778999999984 456766553 45556666655533222 12445 466666 4566
Q ss_pred HhCCCEEEeC
Q 022677 182 EGGMDAIKLE 191 (293)
Q Consensus 182 eaGa~gVkiE 191 (293)
++|||+||+-
T Consensus 303 ~aGAd~I~vg 312 (502)
T PRK07107 303 EAGADFVKVG 312 (502)
T ss_pred HcCCCEEEEC
Confidence 6999999983
No 369
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=86.54 E-value=35 Score=33.68 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=79.0
Q ss_pred HHHhhhCCCcEEEEecCCHHHHHH----HHHcCCcEEE-ECchhhhhhccCC---CCcc----CCHHHHHHHHHHHHccc
Q 022677 84 LRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHGHD---TTLP----ITLEEMLVHCRAVARGA 151 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~SAri----ae~AG~Dail-vGdSla~~~lG~~---dt~~----vtl~eml~h~raV~Ra~ 151 (293)
|+...+++--+-..|+|+..+++. ||+.+.++|+ ++.+.. ..++.. +... ...-.+...++..++..
T Consensus 8 L~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~ 86 (345)
T cd00946 8 FDYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGA-AFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHY 86 (345)
T ss_pred HHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHH-hhcCCccccccchhhhhhhHHHHHHHHHHHHHHC
Confidence 444556666788899999999874 6788999997 433322 122221 1100 11114566677777777
Q ss_pred CCCeEEeeCCCCCCCCC---HHHHHHHHHHHHH---HhCCCEEEeCCCCC-------CcHHHHHHHHHcCCcEEEecccc
Q 022677 152 KRPLLVGDLPFGTYESS---TNQAVDTAVRILK---EGGMDAIKLEGGSP-------SRITAARGIVEAGIAVMGHVGLT 218 (293)
Q Consensus 152 ~~p~vvaDmpfGsy~~s---~e~av~~A~rl~k---eaGa~gVkiEgg~~-------~~~~~ikal~~~GIpV~GHiGLt 218 (293)
+.| |+.-+.-|.- .. .+..++.....++ +.|.++|.+-+... ....+++.....||.|=+=+|-+
T Consensus 87 ~VP-ValHLDHg~~-~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~i 164 (345)
T cd00946 87 GVP-VVLHTDHCAK-KLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGIT 164 (345)
T ss_pred CCC-EEEECCCCCC-ccchhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 888 6666665411 00 2333222222222 46899999966532 13345566678899998888755
Q ss_pred ce
Q 022677 219 PQ 220 (293)
Q Consensus 219 Pq 220 (293)
..
T Consensus 165 gg 166 (345)
T cd00946 165 GG 166 (345)
T ss_pred CC
Confidence 43
No 370
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=86.46 E-value=17 Score=35.42 Aligned_cols=137 Identities=15% Similarity=0.212 Sum_probs=85.9
Q ss_pred HHHHHHHHHcccCCCeEEeeCCCCCCC------------CCHHH----HHHHHHHHHHHhCCCEEEeCCCC-CCcHHHHH
Q 022677 140 MLVHCRAVARGAKRPLLVGDLPFGTYE------------SSTNQ----AVDTAVRILKEGGMDAIKLEGGS-PSRITAAR 202 (293)
Q Consensus 140 ml~h~raV~Ra~~~p~vvaDmpfGsy~------------~s~e~----av~~A~rl~keaGa~gVkiEgg~-~~~~~~ik 202 (293)
+...+|.|++..+.-.|++|.=+=.|. .+.++ ..+.|+... ++|||.|--.|-- .++..+.+
T Consensus 91 v~~air~iK~~~p~l~vi~DvcLc~YT~hGHcGil~~~~idND~Tl~~L~k~Als~A-~AGADiVAPSdMMDGrV~aIR~ 169 (314)
T cd00384 91 VQRAIRAIKEAVPELVVITDVCLCEYTDHGHCGILKDDYVDNDATLELLAKIAVSHA-EAGADIVAPSDMMDGRVAAIRE 169 (314)
T ss_pred HHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeccCCcCccHHHHHHHHHHHHHHH-HcCCCeeecccccccHHHHHHH
Confidence 466778888888877788886432221 22333 344444444 7999999876521 12456677
Q ss_pred HHHHcCC---cEEEeccccceeee-ecCCccc-------cc-C-----CHHHHHHHHHHHHHHHHcCCcEEEec-CCC-H
Q 022677 203 GIVEAGI---AVMGHVGLTPQAIS-VLGGFRP-------QG-K-----NVTSAVKVVETALALQEVGCFSVVLE-CVP-P 263 (293)
Q Consensus 203 al~~~GI---pV~GHiGLtPq~~~-~lgGf~v-------qG-r-----t~~~a~e~l~rA~a~eeAGA~~IvlE-~vp-~ 263 (293)
+|.++|. ++|.+-. -..+ ..|=||- .| | +.....|+++.+..=.+=|||+|.+. ++| -
T Consensus 170 aLd~~g~~~v~ImsYsa---KyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~YL 246 (314)
T cd00384 170 ALDEAGFSDVPIMSYSA---KYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVKPALAYL 246 (314)
T ss_pred HHHHCCCCCCceeecHH---HhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHH
Confidence 7888775 3333310 0111 1111221 12 1 12234788888888888999999986 888 6
Q ss_pred HHHHHHHHhcCCCEEEe
Q 022677 264 PVAAAATSALQIPTIGI 280 (293)
Q Consensus 264 e~a~~It~~l~iPtIGI 280 (293)
++++.+.++.++|+...
T Consensus 247 DIi~~~k~~~~~PvaaY 263 (314)
T cd00384 247 DIIRDVRERFDLPVAAY 263 (314)
T ss_pred HHHHHHHHhcCCCEEEE
Confidence 99999999999999864
No 371
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=86.42 E-value=10 Score=37.17 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCcEEEecCC--------CHHHHHHHHHhcCCCEEEeCC
Q 022677 241 VVETALALQEVGCFSVVLECV--------PPPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 241 ~l~rA~a~eeAGA~~IvlE~v--------p~e~a~~It~~l~iPtIGIGa 282 (293)
.++-++.++++|+|.|-+-+. +.+.++.|.+.+++|+++-|.
T Consensus 251 ~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~ 300 (362)
T PRK10605 251 ALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA 300 (362)
T ss_pred HHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC
Confidence 577788889999999976542 246778899999999886653
No 372
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=86.33 E-value=25 Score=36.97 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=68.0
Q ss_pred CHHHHHHhhhCCCcEEEEec------CCH-------HHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHH
Q 022677 80 TLTHLRQKHKNGEPITMVTA------YDY-------PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRA 146 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~ta------yD~-------~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~ra 146 (293)
.++.|++.. .+.+|.|+.- |.- ..-+.+.++|+|++-+.|++.- ++-|...++.
T Consensus 66 ~lr~l~~~~-~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd------------~~~~~~ai~~ 132 (593)
T PRK14040 66 RLRELKKAM-PNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMND------------PRNLETALKA 132 (593)
T ss_pred HHHHHHHhC-CCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc------------HHHHHHHHHH
Confidence 344555543 4567766532 221 1244566789999999886633 2455556666
Q ss_pred HHcccCCC---eEE-eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHH-cCCcEEEec
Q 022677 147 VARGAKRP---LLV-GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVE-AGIAVMGHV 215 (293)
Q Consensus 147 V~Ra~~~p---~vv-aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~-~GIpV~GHi 215 (293)
++.. +.- .|. .+-|. .+.+..++.+.++. +.||+.|.|-|-.. .+..++++|.+ .++|+--|.
T Consensus 133 ak~~-G~~~~~~i~yt~~p~----~~~~~~~~~a~~l~-~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~ 205 (593)
T PRK14040 133 VRKV-GAHAQGTLSYTTSPV----HTLQTWVDLAKQLE-DMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLHC 205 (593)
T ss_pred HHHc-CCeEEEEEEEeeCCc----cCHHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 5542 221 111 13331 35677777766655 79999999999532 23456666654 367777663
No 373
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=86.24 E-value=18 Score=34.44 Aligned_cols=111 Identities=19% Similarity=0.274 Sum_probs=68.7
Q ss_pred CcEEEEec--CCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcc---cCCCeEEeeCCC----
Q 022677 92 EPITMVTA--YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG---AKRPLLVGDLPF---- 162 (293)
Q Consensus 92 ~pi~m~ta--yD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra---~~~p~vvaDmpf---- 162 (293)
-|+.+=.. .|.-..+.+=++||+.+.. |....+++|.+..++.+.+- .+.+ |-+.+..
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmi------------d~s~l~~~eni~~t~~v~~~a~~~gv~-Ve~ElG~~gg~ 141 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMI------------DGSHLPFEENLALTKKVVEIAHAKGVS-VEAELGTLGGI 141 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEE------------CCCCCCHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCcCc
Confidence 45544433 2455555556778888776 33456899999999988743 3333 3222222
Q ss_pred --------CCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC---------CCcHHHHHHHHHc-CCcEEEec--cccce
Q 022677 163 --------GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGHV--GLTPQ 220 (293)
Q Consensus 163 --------Gsy~~s~e~av~~A~rl~keaGa~gVkiEgg~---------~~~~~~ikal~~~-GIpV~GHi--GLtPq 220 (293)
.+| .|+|++ .+++++.|+|.+=+-=|. ..-.+.++.|.+. +||++.|= |+.+.
T Consensus 142 ed~~~g~~~~~-t~~eea----~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e 214 (282)
T TIGR01859 142 EDGVDEKEAEL-ADPDEA----EQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEE 214 (282)
T ss_pred ccccccccccc-CCHHHH----HHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHH
Confidence 245 588988 456766899998754121 1234666777654 79999996 76654
No 374
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=86.18 E-value=2.2 Score=40.33 Aligned_cols=48 Identities=35% Similarity=0.533 Sum_probs=34.2
Q ss_pred cCCHH-HHHHHHHHHHHHHHcCCcEEEecCC---C------H-------HHHHHHHHhcCCCEEEe
Q 022677 232 GKNVT-SAVKVVETALALQEVGCFSVVLECV---P------P-------PVAAAATSALQIPTIGI 280 (293)
Q Consensus 232 Grt~~-~a~e~l~rA~a~eeAGA~~IvlE~v---p------~-------e~a~~It~~l~iPtIGI 280 (293)
+.+.+ -.+.++++|++|+++|+|+|.+|-. | + -++.++.+++++| +|+
T Consensus 20 ~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p-~Gv 84 (257)
T TIGR00259 20 DDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIP-LGI 84 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCC-eee
Confidence 33433 3578999999999999999999953 3 1 2344566778889 555
No 375
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=86.16 E-value=11 Score=34.33 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCccccc--CCHHHHHHHHHH
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG--KNVTSAVKVVET 244 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqG--rt~~~a~e~l~r 244 (293)
.+++++++.+..++ ++|...+-+-=..+...+.++++.+..=.++ +| .| .| .++
T Consensus 17 ~~~e~a~~~~~al~-~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~--vG--------------AGTVl~-------~~~ 72 (204)
T TIGR01182 17 DDVDDALPLAKALI-EGGLRVLEVTLRTPVALDAIRLLRKEVPDAL--IG--------------AGTVLN-------PEQ 72 (204)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEeCCCccHHHHHHHHHHHCCCCE--EE--------------EEeCCC-------HHH
Confidence 36788888888877 6999988776444445566777765320111 11 12 22 346
Q ss_pred HHHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEE
Q 022677 245 ALALQEVGCFSVVLECVPPPVAAAATSALQIPTI 278 (293)
Q Consensus 245 A~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtI 278 (293)
++...+|||+-|+-++..+++++. +.+-++|.+
T Consensus 73 a~~a~~aGA~FivsP~~~~~v~~~-~~~~~i~~i 105 (204)
T TIGR01182 73 LRQAVDAGAQFIVSPGLTPELAKH-AQDHGIPII 105 (204)
T ss_pred HHHHHHcCCCEEECCCCCHHHHHH-HHHcCCcEE
Confidence 788889999999999999999777 566789988
No 376
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.13 E-value=11 Score=37.06 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCcEEEecCC----------CHHHHHHHHHhcCCCEEEeCC
Q 022677 239 VKVVETALALQEVGCFSVVLECV----------PPPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 239 ~e~l~rA~a~eeAGA~~IvlE~v----------p~e~a~~It~~l~iPtIGIGa 282 (293)
++.++-++.++++|+|.|-+-+- +.++++.+.+.+++|+++.|.
T Consensus 235 ~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~ 288 (361)
T cd04747 235 DELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGS 288 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECC
Confidence 46677788889999999866331 135778899999999998875
No 377
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=86.09 E-value=5.9 Score=38.27 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=55.0
Q ss_pred HHHHHhhhC-CCcEEE---EecCCHHHHHHHHHcCCcEEEECchhhhh-h--------c----cCCCCccCCHHHHHHHH
Q 022677 82 THLRQKHKN-GEPITM---VTAYDYPSAVHLDSAGIDICLVGDSAAMV-V--------H----GHDTTLPITLEEMLVHC 144 (293)
Q Consensus 82 ~~Lr~l~~~-g~pi~m---~tayD~~SAriae~AG~DailvGdSla~~-~--------l----G~~dt~~vtl~eml~h~ 144 (293)
..++.+.+. +-|+++ .+..+.-.|+.++++|+|+|-++...+.. . - .|.+.-.++.-+.+
T Consensus 169 e~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l--- 245 (333)
T TIGR02151 169 EKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASL--- 245 (333)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHH---
Confidence 344444443 567765 33367788999999999999875322110 0 0 01111122222223
Q ss_pred HHHHc-ccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 145 RAVAR-GAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 145 raV~R-a~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
..+++ ..+.| |+++ |+. .+.+++. +.+ ..||++|.+-
T Consensus 246 ~~~~~~~~~ip-VIas---GGI-~~~~di~----kaL-alGAd~V~ig 283 (333)
T TIGR02151 246 LEVRSDAPDAP-IIAS---GGL-RTGLDVA----KAI-ALGADAVGMA 283 (333)
T ss_pred HHHHhcCCCCe-EEEE---CCC-CCHHHHH----HHH-HhCCCeehhh
Confidence 33333 34566 7777 677 4777774 556 4789999873
No 378
>PRK08227 autoinducer 2 aldolase; Validated
Probab=85.96 E-value=14 Score=35.13 Aligned_cols=119 Identities=15% Similarity=0.103 Sum_probs=77.1
Q ss_pred HHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcc---cCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhC
Q 022677 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG---AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (293)
Q Consensus 108 ae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra---~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaG 184 (293)
|-+.|+|++.+. +..| .+ .-.+|+.....|++- -+.|++. =.|-|..-.+..+.+..|.|+-.|-|
T Consensus 103 AvrlGAdAV~~~-----v~~G-s~----~E~~~l~~l~~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELG 171 (264)
T PRK08227 103 AVRLNACAVAAQ-----VFIG-SE----YEHQSIKNIIQLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMG 171 (264)
T ss_pred HHHCCCCEEEEE-----EecC-CH----HHHHHHHHHHHHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHc
Confidence 346799988653 2334 11 125777666666554 4678665 45888775566668999999988999
Q ss_pred CCEEEeCCCCCCcHHHHHHHH-HcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 022677 185 MDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258 (293)
Q Consensus 185 a~gVkiEgg~~~~~~~ikal~-~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~Ivl 258 (293)
||.||.-= . .+..++++ ...+||. ..||= |+ ..+++++..+.-.++||.++.+
T Consensus 172 ADiVK~~y-~---~~~f~~vv~a~~vPVv-----------iaGG~----k~--~~~~~L~~v~~ai~aGa~Gv~~ 225 (264)
T PRK08227 172 AQIIKTYY-V---EEGFERITAGCPVPIV-----------IAGGK----KL--PERDALEMCYQAIDEGASGVDM 225 (264)
T ss_pred CCEEecCC-C---HHHHHHHHHcCCCcEE-----------EeCCC----CC--CHHHHHHHHHHHHHcCCceeee
Confidence 99999962 1 12233344 4447775 23332 33 2267888888888899999875
No 379
>PRK07475 hypothetical protein; Provisional
Probab=85.89 E-value=1.5 Score=40.49 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHHhcCCCEEE
Q 022677 233 KNVTSAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIG 279 (293)
Q Consensus 233 rt~~~a~e~l~rA~a~eeAGA~~IvlE~vp-~e~a~~It~~l~iPtIG 279 (293)
.+++-...+++.++.|+++|||+|...|=. +.....+.+++++|++.
T Consensus 59 ~~~~~~~~l~~aa~~L~~~G~d~I~~~Cgt~~~~~~~l~~~~~VPv~~ 106 (245)
T PRK07475 59 DDPSLLDAFVAAARELEAEGVRAITTSCGFLALFQRELAAALGVPVAT 106 (245)
T ss_pred CCccHHHHHHHHHHHHHHcCCCEEEechHHHHHHHHHHHHHcCCCEec
Confidence 334456789999999999999999999976 56778888899999984
No 380
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=85.79 E-value=7.7 Score=37.97 Aligned_cols=136 Identities=16% Similarity=0.216 Sum_probs=81.9
Q ss_pred HHHHHHHHHcccCCCeEEeeCCCC---------------CCCCCHHHH----HHHHHHHHHHhCCCEEEeCCCCC-CcHH
Q 022677 140 MLVHCRAVARGAKRPLLVGDLPFG---------------TYESSTNQA----VDTAVRILKEGGMDAIKLEGGSP-SRIT 199 (293)
Q Consensus 140 ml~h~raV~Ra~~~p~vvaDmpfG---------------sy~~s~e~a----v~~A~rl~keaGa~gVkiEgg~~-~~~~ 199 (293)
+...++.|+...+.-.|++|.=.= ++ .+.+++ .+.|.... ++|||.|--.|--. ++..
T Consensus 99 v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~~g~-idND~Tl~~Lak~Al~~A-~AGADiVAPSdMMDGrV~a 176 (324)
T PF00490_consen 99 VQRAIRAIKKAFPDLLVITDVCLCEYTSHGHCGILDDEDGE-IDNDETLERLAKQALSHA-EAGADIVAPSDMMDGRVGA 176 (324)
T ss_dssp HHHHHHHHHHHSTTSEEEEEE-STTTBTSSSSSEB-CTTSS-BEHHHHHHHHHHHHHHHH-HHT-SEEEE-S--TTHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEecccccccCCCceEEEECCCCe-EecHHHHHHHHHHHHHHH-HhCCCeeccccccCCHHHH
Confidence 456677788888888788886332 22 233344 44444444 79999998876311 2456
Q ss_pred HHHHHHHcCCcEEEeccccceee---eec-CCccc-------cc-C-----CHHHHHHHHHHHHHHHHcCCcEEEec-CC
Q 022677 200 AARGIVEAGIAVMGHVGLTPQAI---SVL-GGFRP-------QG-K-----NVTSAVKVVETALALQEVGCFSVVLE-CV 261 (293)
Q Consensus 200 ~ikal~~~GIpV~GHiGLtPq~~---~~l-gGf~v-------qG-r-----t~~~a~e~l~rA~a~eeAGA~~IvlE-~v 261 (293)
+.++|.++|.. |+++.+=.. +.+ |=||- .| | +.....|+++.+..=.+=|||+|.+. ++
T Consensus 177 IR~aLd~~g~~---~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~EGAD~lMVKPal 253 (324)
T PF00490_consen 177 IREALDEAGFS---DVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIEEGADILMVKPAL 253 (324)
T ss_dssp HHHHHHHTTCT---TSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHTT-SEEEEESSG
T ss_pred HHHHHHhCCCC---CccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHhhCCCEEEeecch
Confidence 67788888753 222333222 111 11211 12 1 12235788999888899999999986 78
Q ss_pred C-HHHHHHHHHhcCCCEEEe
Q 022677 262 P-PPVAAAATSALQIPTIGI 280 (293)
Q Consensus 262 p-~e~a~~It~~l~iPtIGI 280 (293)
| -++++.+.++.++|+...
T Consensus 254 ~YLDIi~~~k~~~~~P~~aY 273 (324)
T PF00490_consen 254 PYLDIIRRVKERFDLPVAAY 273 (324)
T ss_dssp GGHHHHHHHHHHCTS-EEEE
T ss_pred hHHHHHHHHHHhcCCCEEEE
Confidence 8 699999999999999864
No 381
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=85.57 E-value=4.2 Score=41.82 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=51.3
Q ss_pred EEecCCHHHHHHHHHcCCcEEEECchhhhhhccC-CCCccCCHHHHHHHHHHHHc------ccCCCeEEeeCCCCCCCCC
Q 022677 96 MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGH-DTTLPITLEEMLVHCRAVAR------GAKRPLLVGDLPFGTYESS 168 (293)
Q Consensus 96 m~tayD~~SAriae~AG~DailvGdSla~~~lG~-~dt~~vtl~eml~h~raV~R------a~~~p~vvaDmpfGsy~~s 168 (293)
.=|+.++--|+.+-++|+|.|.||=..|..+-=- .-...++.-..++.|...++ +...| |++| |+.. +
T Consensus 289 aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~-viad---gGir-~ 363 (502)
T PRK07107 289 AGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP-ICSD---GGIV-Y 363 (502)
T ss_pred eccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce-EEEc---CCCC-c
Confidence 3369999999999999999998865554211111 11122333334444444442 22256 9999 5553 3
Q ss_pred HHHHHHHHHHHHHHhCCCEEEeC
Q 022677 169 TNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 169 ~e~av~~A~rl~keaGa~gVkiE 191 (293)
..+. .+.+ ..||++|.+=
T Consensus 364 ~gdi----~KAl-a~GA~~vm~G 381 (502)
T PRK07107 364 DYHM----TLAL-AMGADFIMLG 381 (502)
T ss_pred hhHH----HHHH-HcCCCeeeeC
Confidence 3444 2456 5899999984
No 382
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=85.44 E-value=40 Score=33.32 Aligned_cols=190 Identities=13% Similarity=0.131 Sum_probs=112.1
Q ss_pred CCHHHHH-HhhhCCCcEEEEecCCHHHHHH----HHHcCCcEEE-ECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 022677 79 VTLTHLR-QKHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (293)
Q Consensus 79 ~t~~~Lr-~l~~~g~pi~m~tayD~~SAri----ae~AG~Dail-vGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~ 152 (293)
+|++++. .-++++--+-..|+||..+++. ||+.+.++|+ +..+ .. ....++.+...++..++..+
T Consensus 4 v~~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~-~~--------~~~g~~~~~~~v~~~ae~~~ 74 (347)
T PRK13399 4 ITLRQLLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRG-AR--------KYAGDAMLRHMVLAAAEMYP 74 (347)
T ss_pred ccHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcc-hh--------hhCCHHHHHHHHHHHHHhcC
Confidence 3444444 4445666788999999999874 6778999998 4332 22 12345667777788877664
Q ss_pred -CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC--------------CcHHHHHHHHHcCCcEEEeccc
Q 022677 153 -RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP--------------SRITAARGIVEAGIAVMGHVGL 217 (293)
Q Consensus 153 -~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~--------------~~~~~ikal~~~GIpV~GHiGL 217 (293)
.| |+.-|.-| . +.+.. .+.+ +.|..+|.+-+... ....+++..-..||.|=|=+|-
T Consensus 75 ~VP-VaLHLDHg-~--~~e~i----~~Ai-~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~ 145 (347)
T PRK13399 75 DIP-ICLHQDHG-N--SPATC----QSAI-RSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGC 145 (347)
T ss_pred CCc-EEEECCCC-C--CHHHH----HHHH-hcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeee
Confidence 67 77677654 2 44544 4556 58999999976521 1225566667899999988885
Q ss_pred cceeeeec----CCcccccC-CHHHHHHHHHHHHHHH-HcCCcEEEec--------------C---CCHHHHHHHHHhc-
Q 022677 218 TPQAISVL----GGFRPQGK-NVTSAVKVVETALALQ-EVGCFSVVLE--------------C---VPPPVAAAATSAL- 273 (293)
Q Consensus 218 tPq~~~~l----gGf~vqGr-t~~~a~e~l~rA~a~e-eAGA~~IvlE--------------~---vp~e~a~~It~~l- 273 (293)
++...... .|....+. +.+..-.--+.|..+. +-|+|+|=+= - +.-+..+.|.+.+
T Consensus 146 igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~ 225 (347)
T PRK13399 146 LGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP 225 (347)
T ss_pred ccCcccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC
Confidence 55322110 01000000 0000000123333333 3588876321 1 3346889999999
Q ss_pred CCCEEEeCCCCCCC
Q 022677 274 QIPTIGIGAGPFCS 287 (293)
Q Consensus 274 ~iPtIGIGaG~~~d 287 (293)
++|+. +-+|+++.
T Consensus 226 ~vPLV-LHGgSGvp 238 (347)
T PRK13399 226 NTHLV-MHGSSSVP 238 (347)
T ss_pred CCCEE-EeCCCCCC
Confidence 69964 66666654
No 383
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=85.39 E-value=2.4 Score=39.84 Aligned_cols=62 Identities=21% Similarity=0.164 Sum_probs=45.2
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhh---------hhccCCCCccCCHHHH
Q 022677 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM---------VVHGHDTTLPITLEEM 140 (293)
Q Consensus 79 ~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~---------~~lG~~dt~~vtl~em 140 (293)
--+..||.+..+++||+--.+---.+|+..|+-|+|.|++=.|-.- ..|-|.|++.+-+|+.
T Consensus 8 ei~~~~r~ti~~~s~iig~~~gTglsAkaeeagg~d~i~~~nsgr~r~ag~~Sl~gLLa~~naN~~vld~a 78 (276)
T COG5564 8 EIVASFRYTIHKGSPIIGGGAGTGLSAKAEEAGGIDLIYIYNSGRYRMAGRGSLAGLLAYGNANDIVLDMA 78 (276)
T ss_pred HHHHHHHHhhcCCCcccccccccchhhhhhhcCCceEEEEecCccccccccchhhhhhhccCccHHHHHHH
Confidence 3456788888889999999999999999999999999986333222 2455666665544443
No 384
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.32 E-value=12 Score=34.20 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHH
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~ 246 (293)
.+.+++++.+..++ ++|...|-+-=..+...+.|+.+.+.. |-+ .+| .| |.-+ .++++
T Consensus 13 ~~~~~a~~ia~al~-~gGi~~iEit~~tp~a~~~I~~l~~~~-~~~-~vG--------------AG-TVl~----~e~a~ 70 (201)
T PRK06015 13 DDVEHAVPLARALA-AGGLPAIEITLRTPAALDAIRAVAAEV-EEA-IVG--------------AG-TILN----AKQFE 70 (201)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHC-CCC-EEe--------------eE-eCcC----HHHHH
Confidence 36788988888877 699998877654444566777776532 211 011 12 1111 34677
Q ss_pred HHHHcCCcEEEecCCCHHHHHHHHHhcCCCEE
Q 022677 247 ALQEVGCFSVVLECVPPPVAAAATSALQIPTI 278 (293)
Q Consensus 247 a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtI 278 (293)
...+|||+-|+-+++.+++++. +.+.++|.+
T Consensus 71 ~ai~aGA~FivSP~~~~~vi~~-a~~~~i~~i 101 (201)
T PRK06015 71 DAAKAGSRFIVSPGTTQELLAA-ANDSDVPLL 101 (201)
T ss_pred HHHHcCCCEEECCCCCHHHHHH-HHHcCCCEe
Confidence 8889999999999999999777 567889988
No 385
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=85.29 E-value=30 Score=31.76 Aligned_cols=141 Identities=23% Similarity=0.251 Sum_probs=76.3
Q ss_pred HHHhhhCCCcEEEEecCCHH-----------HHHHHHHcCCcEE-EECchhhhhhccCCCCccCCHHHHHHHHHHHHccc
Q 022677 84 LRQKHKNGEPITMVTAYDYP-----------SAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (293)
Q Consensus 84 Lr~l~~~g~pi~m~tayD~~-----------SAriae~AG~Dai-lvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~ 151 (293)
.+++.+ |.++-+.++=|+| .++.+-+.|+|-| +|= -+|...++. ++++....++|++..
T Consensus 49 a~~~l~-~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~EiD~Vi------n~~~~~~g~--~~~v~~ei~~v~~~~ 119 (221)
T PRK00507 49 AAELLK-GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADEIDMVI------NIGALKSGD--WDAVEADIRAVVEAA 119 (221)
T ss_pred HHHHhC-CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCceEeeec------cHHHhcCCC--HHHHHHHHHHHHHhc
Confidence 344432 3445555655663 2334445677766 231 223333322 777777778777754
Q ss_pred CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC---CcHHHHHHHHHcCCcEEEeccccceeeeecCCc
Q 022677 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP---SRITAARGIVEAGIAVMGHVGLTPQAISVLGGF 228 (293)
Q Consensus 152 ~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~---~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf 228 (293)
...++=+=++. +| .+.++. ..+.++..++|+|-||.--|.. ...+.++.+.+.- -+.+ +.
T Consensus 120 ~~~~lKvIlEt-~~-L~~e~i-~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~---~~~~-----------~I 182 (221)
T PRK00507 120 GGAVLKVIIET-CL-LTDEEK-VKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV---GPRV-----------GV 182 (221)
T ss_pred CCceEEEEeec-Cc-CCHHHH-HHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh---CCCc-----------eE
Confidence 22222243443 24 455664 5667777789999999965421 1344455554321 0111 12
Q ss_pred cccc--CCHHHHHHHHHHHHHHHHcCCcEEE
Q 022677 229 RPQG--KNVTSAVKVVETALALQEVGCFSVV 257 (293)
Q Consensus 229 ~vqG--rt~~~a~e~l~rA~a~eeAGA~~Iv 257 (293)
+.-| || +++|..|.+|||+-|=
T Consensus 183 KasGGIrt-------~~~a~~~i~aGA~riG 206 (221)
T PRK00507 183 KASGGIRT-------LEDALAMIEAGATRLG 206 (221)
T ss_pred EeeCCcCC-------HHHHHHHHHcCcceEc
Confidence 3333 55 6788899999998763
No 386
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=85.06 E-value=16 Score=34.22 Aligned_cols=47 Identities=26% Similarity=0.394 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCC------------C--CcHHHHHHHHHc-CCcEEEe
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGS------------P--SRITAARGIVEA-GIAVMGH 214 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~------------~--~~~~~ikal~~~-GIpV~GH 214 (293)
.+++++++.|.+++ +.||+.|.|=+.. | +..++++.+.+. ++|++-|
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiD 81 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVD 81 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 57889999988888 5899999993211 0 134566767666 8888866
No 387
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=84.88 E-value=26 Score=30.73 Aligned_cols=126 Identities=19% Similarity=0.182 Sum_probs=75.8
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEee
Q 022677 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaD 159 (293)
.++.+++.+. .-++-.-|..|--.+..+.++|.|.+..+.+. .+.+..++. .+.+++ .
T Consensus 45 ~i~~l~~~~~-~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~---------------~~~~~~~~~----~~~~~i-~- 102 (190)
T cd00452 45 AIRALRKEFP-EALIGAGTVLTPEQADAAIAAGAQFIVSPGLD---------------PEVVKAANR----AGIPLL-P- 102 (190)
T ss_pred HHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCC---------------HHHHHHHHH----cCCcEE-C-
Confidence 3444444332 23344557788899999999999999765321 244443333 344533 2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHc--CCcEEEeccccceeeeecCCcccccCCHHH
Q 022677 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA--GIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (293)
Q Consensus 160 mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~--GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~ 237 (293)
+. .|++|+. +.+ +.|+|.|++--....-...++.+.+. .+|++. .| |-|
T Consensus 103 ----gv-~t~~e~~----~A~-~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a-----------~G-----GI~--- 153 (190)
T cd00452 103 ----GV-ATPTEIM----QAL-ELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMP-----------TG-----GVS--- 153 (190)
T ss_pred ----Cc-CCHHHHH----HHH-HCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEE-----------eC-----CCC---
Confidence 24 3778873 345 68999999953222234556666542 345542 33 334
Q ss_pred HHHHHHHHHHHHHcCCcEEEecC
Q 022677 238 AVKVVETALALQEVGCFSVVLEC 260 (293)
Q Consensus 238 a~e~l~rA~a~eeAGA~~IvlE~ 260 (293)
.+.+..|.++||+++.+=.
T Consensus 154 ----~~n~~~~~~~G~~~v~v~s 172 (190)
T cd00452 154 ----LDNAAEWLAAGVVAVGGGS 172 (190)
T ss_pred ----HHHHHHHHHCCCEEEEEch
Confidence 3578889999999998764
No 388
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=84.82 E-value=9.8 Score=40.75 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCcEEEecC--------------CCHHHHHHHHHhcCCCEEEeCC
Q 022677 239 VKVVETALALQEVGCFSVVLEC--------------VPPPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 239 ~e~l~rA~a~eeAGA~~IvlE~--------------vp~e~a~~It~~l~iPtIGIGa 282 (293)
++.++-++.++++|+|.|-+-. ...+.++.|.+.+++|+|+-|.
T Consensus 638 ~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~ 695 (765)
T PRK08255 638 DDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGA 695 (765)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCC
Confidence 5667888889999999998842 1246778899999999987653
No 389
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.77 E-value=13 Score=33.98 Aligned_cols=88 Identities=24% Similarity=0.305 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCC--c-EEEeccccceeeeecCCcccccCCHHHHHHHHHH
Q 022677 168 STNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGI--A-VMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVET 244 (293)
Q Consensus 168 s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GI--p-V~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~r 244 (293)
+.++++.-+..++ ++|...+-+-=..+...+.|++|.+.-= | ++ +| .| |. --.++
T Consensus 23 ~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~--vG--------------aG-TV----~~~~~ 80 (213)
T PRK06552 23 SKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVL--IG--------------AG-TV----LDAVT 80 (213)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeE--Ee--------------ee-eC----CCHHH
Confidence 6788888877777 6899888765444445567777765210 1 11 11 12 11 11346
Q ss_pred HHHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEE
Q 022677 245 ALALQEVGCFSVVLECVPPPVAAAATSALQIPTI 278 (293)
Q Consensus 245 A~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtI 278 (293)
++...+|||+-|+-++..+++++. +.+.++|.+
T Consensus 81 ~~~a~~aGA~FivsP~~~~~v~~~-~~~~~i~~i 113 (213)
T PRK06552 81 ARLAILAGAQFIVSPSFNRETAKI-CNLYQIPYL 113 (213)
T ss_pred HHHHHHcCCCEEECCCCCHHHHHH-HHHcCCCEE
Confidence 788889999999999999999776 567899988
No 390
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=84.67 E-value=12 Score=36.70 Aligned_cols=134 Identities=18% Similarity=0.236 Sum_probs=85.8
Q ss_pred cCCCCccCCHHHHHHHHHHHHcccCCCeE-EeeCC-------CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHH
Q 022677 128 GHDTTLPITLEEMLVHCRAVARGAKRPLL-VGDLP-------FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRIT 199 (293)
Q Consensus 128 G~~dt~~vtl~eml~h~raV~Ra~~~p~v-vaDmp-------fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~ 199 (293)
-+|.-...|+++++..++.++. .+.|-| ..-.| .||..-+++-.++-++|.+|+.=-+.+-|-|-. ..+
T Consensus 51 SMPgv~r~s~d~l~~~~~~~~~-lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvc--Lce 127 (330)
T COG0113 51 SMPGVYRYSLDRLVEEAEELVD-LGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVC--LCE 127 (330)
T ss_pred CCCCceeccHHHHHHHHHHHHh-cCCCEEEEeCCCcccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeec--ccC
Confidence 4677777888888888877765 223322 23333 566666788888888999985422666676632 011
Q ss_pred HHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhc------
Q 022677 200 AARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSAL------ 273 (293)
Q Consensus 200 ~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l------ 273 (293)
----||.|+.-. +|+ | -+++..+-+.+.|..+.+||||.|=.-.+=.-.+..|.+.|
T Consensus 128 ---------yT~HGHcGil~~-----~~~-V--~ND~Tle~l~k~Avs~AeAGAdivAPSdMMDGrV~aIR~aLd~ag~~ 190 (330)
T COG0113 128 ---------YTDHGHCGILDD-----GGY-V--DNDETLEILAKQAVSQAEAGADIVAPSDMMDGRVGAIREALDEAGFI 190 (330)
T ss_pred ---------CcCCCccccccC-----CCe-e--cchHHHHHHHHHHHHHHHcCCCeecccccccchHHHHHHHHHHcCCC
Confidence 013467775432 111 1 34666778888999999999999877665555557777666
Q ss_pred CCCEEEeC
Q 022677 274 QIPTIGIG 281 (293)
Q Consensus 274 ~iPtIGIG 281 (293)
++|++...
T Consensus 191 ~v~IMsYs 198 (330)
T COG0113 191 DVPIMSYS 198 (330)
T ss_pred cceeeehh
Confidence 47777654
No 391
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=84.64 E-value=20 Score=35.22 Aligned_cols=135 Identities=19% Similarity=0.167 Sum_probs=79.0
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
-++..+++|+|.|=+| +|...+-.++ .++.+.+....+-+.+--. . . .+-++ +.+ ++
T Consensus 31 ia~~L~~~GV~~IE~G---------~p~~~~~~~e----~i~~i~~~~~~~~i~~~~r---~--~-~~di~---~a~-~~ 87 (378)
T PRK11858 31 IARMLDEIGVDQIEAG---------FPAVSEDEKE----AIKAIAKLGLNASILALNR---A--V-KSDID---ASI-DC 87 (378)
T ss_pred HHHHHHHhCCCEEEEe---------CCCcChHHHH----HHHHHHhcCCCeEEEEEcc---c--C-HHHHH---HHH-hC
Confidence 4677899999999886 3433222222 2344443222233333321 1 1 23333 233 68
Q ss_pred CCCEEEeCCCCC-----------------CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHH
Q 022677 184 GMDAIKLEGGSP-----------------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (293)
Q Consensus 184 Ga~gVkiEgg~~-----------------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~ 246 (293)
|++.|.+-.... ...+.++.+.+.|+.|+.. +. . .+|+ +-+.+++-++
T Consensus 88 g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~----~e----d-----~~r~--~~~~l~~~~~ 152 (378)
T PRK11858 88 GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS----AE----D-----ASRT--DLDFLIEFAK 152 (378)
T ss_pred CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE----ec----c-----CCCC--CHHHHHHHHH
Confidence 999999876531 1234667778889888743 11 1 2344 3467777888
Q ss_pred HHHHcCCcEEEecC-----CCH---HHHHHHHHhcCCC
Q 022677 247 ALQEVGCFSVVLEC-----VPP---PVAAAATSALQIP 276 (293)
Q Consensus 247 a~eeAGA~~IvlE~-----vp~---e~a~~It~~l~iP 276 (293)
++.++||+.|.+-- .|. ++++.+.+.+++|
T Consensus 153 ~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~ 190 (378)
T PRK11858 153 AAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVDIP 190 (378)
T ss_pred HHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCe
Confidence 88899999998762 343 5566666777776
No 392
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=84.61 E-value=53 Score=34.07 Aligned_cols=150 Identities=18% Similarity=0.190 Sum_probs=84.7
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHH-cccCCCeEEeeC-C-CCCCCCCHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVA-RGAKRPLLVGDL-P-FGTYESSTNQAVDTAVRIL 180 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~-Ra~~~p~vvaDm-p-fGsy~~s~e~av~~A~rl~ 180 (293)
-|+.++++|+|.|=+|.+. ..+ .|+ ..++.++ +..+.+-+.+=. . --.-....+..++ ..
T Consensus 28 Ia~~L~~~GVd~IE~G~p~---------~s~---~d~-~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~e----a~ 90 (526)
T TIGR00977 28 IAERLDDLGIHYIEGGWPG---------ANP---KDV-QFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQ----AL 90 (526)
T ss_pred HHHHHHHcCCCEEEEeCCC---------CCh---HHH-HHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHH----HH
Confidence 5777899999999887433 222 222 2334443 233333233211 0 0011123344544 33
Q ss_pred HHhCCCEEEeCCCC-----------------CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHH
Q 022677 181 KEGGMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVE 243 (293)
Q Consensus 181 keaGa~gVkiEgg~-----------------~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~ 243 (293)
.++|++.|.+-... +.+.+.++.+.+.|..|.. .+ +++..+| |+ +.+.+++
T Consensus 91 ~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~----~~--e~f~D~~----r~--~~~~l~~ 158 (526)
T TIGR00977 91 IKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIY----DA--EHFFDGY----KA--NPEYALA 158 (526)
T ss_pred hcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE----Ee--eeeeecc----cC--CHHHHHH
Confidence 46889998885432 1123456677788887752 11 1222333 34 3456677
Q ss_pred HHHHHHHcCCcEEEecC-----CCH---HHHHHHHHhcCCCEEEeCC
Q 022677 244 TALALQEVGCFSVVLEC-----VPP---PVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 244 rA~a~eeAGA~~IvlE~-----vp~---e~a~~It~~l~iPtIGIGa 282 (293)
-++++.++||+.|.+.- .|. ++++.+.+.++.|.+++-+
T Consensus 159 ~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~ 205 (526)
T TIGR00977 159 TLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHA 205 (526)
T ss_pred HHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 77777899999999872 453 5667777777777777754
No 393
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=84.60 E-value=12 Score=36.55 Aligned_cols=135 Identities=19% Similarity=0.145 Sum_probs=78.6
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
-++..+++|+|.|=+| +|...+- | .+.++.+.+..+.+-+.+ ++. .+. +.++ ...++
T Consensus 28 ia~~L~~~Gv~~IEvG---------~p~~~~~---~-~e~i~~i~~~~~~~~i~~---~~r--~~~-~di~----~a~~~ 84 (365)
T TIGR02660 28 IARALDEAGVDELEVG---------IPAMGEE---E-RAVIRAIVALGLPARLMA---WCR--ARD-ADIE----AAARC 84 (365)
T ss_pred HHHHHHHcCCCEEEEe---------CCCCCHH---H-HHHHHHHHHcCCCcEEEE---EcC--CCH-HHHH----HHHcC
Confidence 4677899999999886 4433221 1 223455544332232222 111 122 3333 33368
Q ss_pred CCCEEEeCCCCC-----------------CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHH
Q 022677 184 GMDAIKLEGGSP-----------------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (293)
Q Consensus 184 Ga~gVkiEgg~~-----------------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~ 246 (293)
|++.|.+-.... ...+.++.+.+.|..|+.. +. -.+|+ +-+.+++-++
T Consensus 85 g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~----~e---------d~~r~--~~~~l~~~~~ 149 (365)
T TIGR02660 85 GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG----GE---------DASRA--DPDFLVELAE 149 (365)
T ss_pred CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe----ec---------CCCCC--CHHHHHHHHH
Confidence 999999887531 1225566677888887732 11 12344 3456777777
Q ss_pred HHHHcCCcEEEecC-----CCH---HHHHHHHHhcCCC
Q 022677 247 ALQEVGCFSVVLEC-----VPP---PVAAAATSALQIP 276 (293)
Q Consensus 247 a~eeAGA~~IvlE~-----vp~---e~a~~It~~l~iP 276 (293)
++.++|++.|.+.- .|. ++++.+.+.+++|
T Consensus 150 ~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~ 187 (365)
T TIGR02660 150 VAAEAGADRFRFADTVGILDPFSTYELVRALRQAVDLP 187 (365)
T ss_pred HHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCe
Confidence 88899999998762 343 4556666677776
No 394
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=84.53 E-value=43 Score=32.87 Aligned_cols=144 Identities=19% Similarity=0.224 Sum_probs=83.5
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeC
Q 022677 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (293)
Q Consensus 81 ~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDm 160 (293)
++-|++..++-..-++.+++|..++..+++. +|++.+|...... ..+.+.+.+ ++.|++. =.
T Consensus 146 L~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~-vd~lqIgAr~~~N---------------~~LL~~va~-~~kPViL-k~ 207 (335)
T PRK08673 146 LKLLAEAREETGLPIVTEVMDPRDVELVAEY-VDILQIGARNMQN---------------FDLLKEVGK-TNKPVLL-KR 207 (335)
T ss_pred HHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-CCeEEECcccccC---------------HHHHHHHHc-CCCcEEE-eC
Confidence 4445553333334578899999999999998 9999998433211 334455554 6678444 33
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCC-CEEEeCCCCCC---------cHHHHHHHHH-cCCcEEEeccccceeeeecCCcc
Q 022677 161 PFGTYESSTNQAVDTAVRILKEGGM-DAIKLEGGSPS---------RITAARGIVE-AGIAVMGHVGLTPQAISVLGGFR 229 (293)
Q Consensus 161 pfGsy~~s~e~av~~A~rl~keaGa-~gVkiEgg~~~---------~~~~ikal~~-~GIpV~GHiGLtPq~~~~lgGf~ 229 (293)
+. . .+.++....+-.+. ..|- +.+-+|-|... -...+..+.+ .+.||++--. |.
T Consensus 208 G~--~-~ti~E~l~A~e~i~-~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~s------H~----- 272 (335)
T PRK08673 208 GM--S-ATIEEWLMAAEYIL-AEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPS------HA----- 272 (335)
T ss_pred CC--C-CCHHHHHHHHHHHH-HcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCC------CC-----
Confidence 32 2 35676665554444 5666 57778843200 0112333343 3788865311 11
Q ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC
Q 022677 230 PQGKNVTSAVKVVETALALQEVGCFSVVLECVP 262 (293)
Q Consensus 230 vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp 262 (293)
.|+. +-+..-+++-..+|||++++|.-+
T Consensus 273 -~G~~----~~v~~~a~AAvA~GAdGliIE~H~ 300 (335)
T PRK08673 273 -TGKR----DLVEPLALAAVAAGADGLIVEVHP 300 (335)
T ss_pred -Cccc----cchHHHHHHHHHhCCCEEEEEecC
Confidence 2322 123335788889999999999644
No 395
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=84.51 E-value=37 Score=32.08 Aligned_cols=152 Identities=12% Similarity=0.076 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 103 ~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ke 182 (293)
-+|+.++++|+.++.-|.-= .-.--| +-..+.. |=+...+.+++..+.|++. | +| +++++ .++.+
T Consensus 33 ~~a~~~~~~g~~~~r~g~~k-pRts~~-sf~G~G~-~gl~~L~~~~~~~Gl~~~T-e-v~-----d~~~v-----~~~~e 97 (250)
T PRK13397 33 LAASSAKKLGYNYFRGGAYK-PRTSAA-SFQGLGL-QGIRYLHEVCQEFGLLSVS-E-IM-----SERQL-----EEAYD 97 (250)
T ss_pred HHHHHHHHcCCCEEEecccC-CCCCCc-ccCCCCH-HHHHHHHHHHHHcCCCEEE-e-eC-----CHHHH-----HHHHh
Confidence 35677888888888765211 110000 1122333 3466677788889999554 3 32 23444 45555
Q ss_pred hCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCC-cEEEec-C
Q 022677 183 GGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGC-FSVVLE-C 260 (293)
Q Consensus 183 aGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA-~~IvlE-~ 260 (293)
.+|.+||=...-.-.++++++.+.|.||.-=-| |.-| .+|++.-+..+.+.|. ..+++| |
T Consensus 98 -~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G--------------~~~t---~~e~~~A~e~i~~~Gn~~i~L~eRg 159 (250)
T PRK13397 98 -YLDVIQVGARNMQNFEFLKTLSHIDKPILFKRG--------------LMAT---IEEYLGALSYLQDTGKSNIILCERG 159 (250)
T ss_pred -cCCEEEECcccccCHHHHHHHHccCCeEEEeCC--------------CCCC---HHHHHHHHHHHHHcCCCeEEEEccc
Confidence 599999976543356889999999999973211 2233 3455666666778999 699999 6
Q ss_pred CC------H-----HHHHHHHHhcCCCEEEeCCCCCCCce
Q 022677 261 VP------P-----PVAAAATSALQIPTIGIGAGPFCSGQ 289 (293)
Q Consensus 261 vp------~-----e~a~~It~~l~iPtIGIGaG~~~dGQ 289 (293)
+. . ..+..+.+..+.|+| +|.. +.-|+
T Consensus 160 ~~~Y~~~~~n~~dl~ai~~lk~~~~lPVi-vd~S-Hs~G~ 197 (250)
T PRK13397 160 VRGYDVETRNMLDIMAVPIIQQKTDLPII-VDVS-HSTGR 197 (250)
T ss_pred cCCCCCccccccCHHHHHHHHHHhCCCeE-ECCC-CCCcc
Confidence 42 1 344566666789987 5555 55553
No 396
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=84.43 E-value=0.94 Score=42.53 Aligned_cols=87 Identities=24% Similarity=0.296 Sum_probs=56.1
Q ss_pred HHHHHHhCCCEEEeCCCCCC-----cHHHHHHHHHcCCcEEEeccccceeeeecCCcccccC-CHHHHHHHHHHHHHHHH
Q 022677 177 VRILKEGGMDAIKLEGGSPS-----RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGK-NVTSAVKVVETALALQE 250 (293)
Q Consensus 177 ~rl~keaGa~gVkiEgg~~~-----~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGr-t~~~a~e~l~rA~a~ee 250 (293)
.+..++-|.++|-|.+|.-. ....|+.+.+.|..|.-.+|--. .+. ...+..+.++.++.-.+
T Consensus 90 l~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~-----------~~~~~~~~~~~~i~~~~~dLe 158 (244)
T PF02679_consen 90 LEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKD-----------PESDFSLDPEELIEQAKRDLE 158 (244)
T ss_dssp HHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SS-----------HHHHTT--CCHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCC-----------chhcccCCHHHHHHHHHHHHH
Confidence 45677889999999999521 23567777888888887766000 000 00123589999999999
Q ss_pred cCCcEEEecCC--------------CHHHHHHHHHhcC
Q 022677 251 VGCFSVVLECV--------------PPPVAAAATSALQ 274 (293)
Q Consensus 251 AGA~~IvlE~v--------------p~e~a~~It~~l~ 274 (293)
|||+.|.+|+= -.++++.|.++++
T Consensus 159 AGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~ 196 (244)
T PF02679_consen 159 AGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIERLG 196 (244)
T ss_dssp HTECEEEE--TTT--STTB-TTS-B-HHHHHHHHTTS-
T ss_pred CCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHHhCC
Confidence 99999999976 2477788877765
No 397
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=84.40 E-value=4.5 Score=39.15 Aligned_cols=92 Identities=21% Similarity=0.328 Sum_probs=57.3
Q ss_pred HHHhhhCC--CcEEEE--ecCCHH------HHHHHHHcCCcEEEE-CchhhhhhccCCCCccCCHHHHHHHHHHHHcccC
Q 022677 84 LRQKHKNG--EPITMV--TAYDYP------SAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (293)
Q Consensus 84 Lr~l~~~g--~pi~m~--tayD~~------SAriae~AG~Dailv-GdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~ 152 (293)
++++++.- -|+++= .-||-. -|++++++|++++.| |-.- .++|... ..|+.+ +.|++..+
T Consensus 127 v~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr---~~~y~~~--ad~~~I----~~vk~~~~ 197 (323)
T COG0042 127 VKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTR---AQGYLGP--ADWDYI----KELKEAVP 197 (323)
T ss_pred HHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccH---HhcCCCc--cCHHHH----HHHHHhCC
Confidence 34444433 466542 336554 699999999999975 3333 3455444 455444 55666666
Q ss_pred -CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 022677 153 -RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (293)
Q Consensus 153 -~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg 193 (293)
.| |+++ |+- .|.+++ .+.++..|+|+|.+=-+
T Consensus 198 ~ip-vi~N---GdI-~s~~~a----~~~l~~tg~DgVMigRg 230 (323)
T COG0042 198 SIP-VIAN---GDI-KSLEDA----KEMLEYTGADGVMIGRG 230 (323)
T ss_pred CCe-EEeC---CCc-CCHHHH----HHHHHhhCCCEEEEcHH
Confidence 66 5555 333 366777 56888899999999543
No 398
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=84.36 E-value=28 Score=30.54 Aligned_cols=132 Identities=16% Similarity=0.197 Sum_probs=72.0
Q ss_pred HcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 022677 110 SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (293)
Q Consensus 110 ~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVk 189 (293)
+.|+|+|=+|.++ ....| +...+.+++..+.-.+.+|+..- +++.. .+.++. ++||+.|-
T Consensus 22 ~~~v~~iev~~~l-~~~~g------------~~~i~~l~~~~~~~~i~~d~k~~----d~~~~--~~~~~~-~~Gad~i~ 81 (206)
T TIGR03128 22 ADYVDIIEIGTPL-IKNEG------------IEAVKEMKEAFPDRKVLADLKTM----DAGEY--EAEQAF-AAGADIVT 81 (206)
T ss_pred ccCeeEEEeCCHH-HHHhC------------HHHHHHHHHHCCCCEEEEEEeec----cchHH--HHHHHH-HcCCCEEE
Confidence 3477777676444 22223 45667776654334577898763 33322 112334 79999886
Q ss_pred eCCCC--CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecC------C
Q 022677 190 LEGGS--PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC------V 261 (293)
Q Consensus 190 iEgg~--~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~------v 261 (293)
+-.-. .....+++.+.+.|++++.-+ ++| . +..++++.+.+.|+|.+-++- .
T Consensus 82 vh~~~~~~~~~~~i~~~~~~g~~~~~~~-~~~-------------~------t~~~~~~~~~~~g~d~v~~~pg~~~~~~ 141 (206)
T TIGR03128 82 VLGVADDATIKGAVKAAKKHGKEVQVDL-INV-------------K------DKVKRAKELKELGADYIGVHTGLDEQAK 141 (206)
T ss_pred EeccCCHHHHHHHHHHHHHcCCEEEEEe-cCC-------------C------ChHHHHHHHHHcCCCEEEEcCCcCcccC
Confidence 54321 113467788889999997410 011 1 133455555667888776641 0
Q ss_pred ---CHHHHHHHHHhcCCCEEE-eC
Q 022677 262 ---PPPVAAAATSALQIPTIG-IG 281 (293)
Q Consensus 262 ---p~e~a~~It~~l~iPtIG-IG 281 (293)
..+.++.+.+.++.|.+. .|
T Consensus 142 ~~~~~~~i~~l~~~~~~~~i~v~G 165 (206)
T TIGR03128 142 GQNPFEDLQTILKLVKEARVAVAG 165 (206)
T ss_pred CCCCHHHHHHHHHhcCCCcEEEEC
Confidence 123456666666544443 44
No 399
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=84.33 E-value=14 Score=33.03 Aligned_cols=93 Identities=17% Similarity=0.236 Sum_probs=53.0
Q ss_pred HHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCC
Q 022677 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (293)
Q Consensus 83 ~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpf 162 (293)
.++++++.+. .+++.+++...++.++++|+|.+.+... . .-|+........ ....+.+++..+.| +++.
T Consensus 94 ~~~~~~~~~i-~~i~~v~~~~~~~~~~~~gad~i~~~~~-~--~~G~~~~~~~~~---~~~i~~i~~~~~~P-vi~~--- 162 (236)
T cd04730 94 VVERLKAAGI-KVIPTVTSVEEARKAEAAGADALVAQGA-E--AGGHRGTFDIGT---FALVPEVRDAVDIP-VIAA--- 162 (236)
T ss_pred HHHHHHHcCC-EEEEeCCCHHHHHHHHHcCCCEEEEeCc-C--CCCCCCccccCH---HHHHHHHHHHhCCC-EEEE---
Confidence 3444444444 4566777878888888899999975222 1 113322221222 33344555555678 5554
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 163 Gsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
|+. .+++++ .+++ +.|+++|-+-.
T Consensus 163 GGI-~~~~~v----~~~l-~~GadgV~vgS 186 (236)
T cd04730 163 GGI-ADGRGI----AAAL-ALGADGVQMGT 186 (236)
T ss_pred CCC-CCHHHH----HHHH-HcCCcEEEEch
Confidence 344 244555 4556 58999998853
No 400
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=84.20 E-value=37 Score=31.83 Aligned_cols=125 Identities=10% Similarity=0.003 Sum_probs=71.1
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhh----hhhccCCCCccCCHHHHHHHHHHHHcc---cC
Q 022677 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAA----MVVHGHDTTLPITLEEMLVHCRAVARG---AK 152 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla----~~~lG~~dt~~vtl~eml~h~raV~Ra---~~ 152 (293)
.++.+.++..+ ..+......+.--...+.++|+|.|-+-.+++ -..+| -+.+|.+..++.+.+- .+
T Consensus 53 ~~~~l~~~~~~-~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~------~~~~e~~~~~~~~i~~a~~~G 125 (262)
T cd07948 53 DCEAIAKLGLK-AKILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHG------KSITEIIESAVEVIEFVKSKG 125 (262)
T ss_pred HHHHHHhCCCC-CcEEEEecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHCC
Confidence 34445443222 34555555677777888889999885433322 22333 4566665555433332 22
Q ss_pred CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHHc-CCcEEEe
Q 022677 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGH 214 (293)
Q Consensus 153 ~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~~-GIpV~GH 214 (293)
.. |...++. .|..+++...+.+.++. +.|++.+.|-|-.. .+..+++.+.+. ++|+--|
T Consensus 126 ~~-v~~~~ed-a~r~~~~~l~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H 190 (262)
T cd07948 126 IE-VRFSSED-SFRSDLVDLLRVYRAVD-KLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFH 190 (262)
T ss_pred Ce-EEEEEEe-eCCCCHHHHHHHHHHHH-HcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 22 5566664 45567788777766655 79999999999532 123445555442 4565555
No 401
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=84.18 E-value=39 Score=32.06 Aligned_cols=192 Identities=17% Similarity=0.086 Sum_probs=103.5
Q ss_pred CCHHHHHHhhhC-C-CcEEEEecCCHHHHHHH------HHcCCcEE--EECchhhhhhccCCCCccCC-HHHHHHHHHHH
Q 022677 79 VTLTHLRQKHKN-G-EPITMVTAYDYPSAVHL------DSAGIDIC--LVGDSAAMVVHGHDTTLPIT-LEEMLVHCRAV 147 (293)
Q Consensus 79 ~t~~~Lr~l~~~-g-~pi~m~tayD~~SAria------e~AG~Dai--lvGdSla~~~lG~~dt~~vt-l~eml~h~raV 147 (293)
.|+..-..+.++ | +++.-+||.|.-...+- .++|++=| ++||....--..-+..+... -.++++..+
T Consensus 46 ~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~-- 123 (281)
T TIGR00677 46 LTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIR-- 123 (281)
T ss_pred hHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHH--
Confidence 344433344322 3 78999999998755443 35699866 48997632111111111111 235555444
Q ss_pred HcccCCCeE--EeeCCCCCCCCC-HHHHHHHHHHHHHHhCCCEEEeCCCC--CCcHHHHHHHHHcCCcEEEeccccceee
Q 022677 148 ARGAKRPLL--VGDLPFGTYESS-TNQAVDTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEAGIAVMGHVGLTPQAI 222 (293)
Q Consensus 148 ~Ra~~~p~v--vaDmpfGsy~~s-~e~av~~A~rl~keaGa~gVkiEgg~--~~~~~~ikal~~~GIpV~GHiGLtPq~~ 222 (293)
+-.+..|- ++--|.|-.+.. .+.-++.-.+=+ ++||+-+.-.=-- +.....++++.++||.+--..|+.|-..
T Consensus 124 -~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki-~aGA~f~iTQ~~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~s 201 (281)
T TIGR00677 124 -SKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKV-DAGADFIITQLFYDVDNFLKFVNDCRAIGIDCPIVPGIMPINN 201 (281)
T ss_pred -HhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHH-HcCCCEeeccceecHHHHHHHHHHHHHcCCCCCEEeeccccCC
Confidence 32222233 377787644432 222233333323 6899965433111 1123455666777665544668888422
Q ss_pred -------eecCCccc---------ccCCH-H-----HHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHHhcC
Q 022677 223 -------SVLGGFRP---------QGKNV-T-----SAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQ 274 (293)
Q Consensus 223 -------~~lgGf~v---------qGrt~-~-----~a~e~l~rA~a~eeAGA~~IvlE~vp-~e~a~~It~~l~ 274 (293)
..+.|-.+ ..+++ + ..+-+.+.++.+.+.|+++|-+=.+- ++.+..|.++++
T Consensus 202 ~~~~~~~~~~~Gi~vP~~l~~~l~~~~~~~~~~~~~gi~~a~~~~~~l~~~G~~giH~~t~n~~~~~~~il~~l~ 276 (281)
T TIGR00677 202 YASFLRRAKWSKTKIPQEIMSRLEPIKDDDEAVRDYGIELIVEMCQKLLASGIKGLHFYTLNLEKAALMILERLG 276 (281)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHCCCCeeEEeccCchHHHHHHHHHcC
Confidence 11222222 12222 2 12456777888888999999988886 688888888876
No 402
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=83.98 E-value=23 Score=29.33 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=41.2
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~-~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
|+.+.++|+|.|.+..+.... .++....++.+++.. +.+ +...+.. +.. .+.+ . +.+.
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~-----------~~~~~~~~~~i~~~~~~~~-v~~~~~~--~~~-~~~~-----~-~~~~ 135 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL-----------AREDLELIRELREAVPDVK-VVVKLSP--TGE-LAAA-----A-AEEA 135 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH-----------HHHHHHHHHHHHHhcCCce-EEEEECC--CCc-cchh-----h-HHHc
Confidence 578899999999887555322 344455566666655 455 5555542 111 1122 1 3468
Q ss_pred CCCEEEeCCC
Q 022677 184 GMDAIKLEGG 193 (293)
Q Consensus 184 Ga~gVkiEgg 193 (293)
|++.+.+.+.
T Consensus 136 g~d~i~~~~~ 145 (200)
T cd04722 136 GVDEVGLGNG 145 (200)
T ss_pred CCCEEEEcCC
Confidence 9999999864
No 403
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=83.92 E-value=5.8 Score=38.80 Aligned_cols=133 Identities=16% Similarity=0.213 Sum_probs=78.1
Q ss_pred ccCCCCccCCHHHHHHHHHHHHc-ccCCCeEEee-------CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcH
Q 022677 127 HGHDTTLPITLEEMLVHCRAVAR-GAKRPLLVGD-------LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRI 198 (293)
Q Consensus 127 lG~~dt~~vtl~eml~h~raV~R-a~~~p~vvaD-------mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~ 198 (293)
-.+|.....+++.++.+++.... |.+ .++..- -+.|+...+++..+..|+|.+|+.=-+.+-|-|=. ..
T Consensus 46 ~smPg~~r~sid~l~~~v~~~~~~GI~-~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvc--lc 122 (324)
T PF00490_consen 46 SSMPGVYRYSIDSLVKEVEEAVDLGIR-AVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVC--LC 122 (324)
T ss_dssp TTSTTEEEEEHHHHHHHHHHHHHTT---EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE---ST
T ss_pred cCCCCeeeeCHHHHHHHHHHHHHCCCC-EEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEecc--cc
Confidence 35777778888988888887655 333 223322 25566666777788888888886644544444421 00
Q ss_pred HHHHHHHHcCCcEEEeccccc-eeeeecCCccccc--CCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhc--
Q 022677 199 TAARGIVEAGIAVMGHVGLTP-QAISVLGGFRPQG--KNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSAL-- 273 (293)
Q Consensus 199 ~~ikal~~~GIpV~GHiGLtP-q~~~~lgGf~vqG--rt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l-- 273 (293)
+ ----||.|+.- . .| -+++..+.+-+.|..+.+||||+|=.-.+=.--+..|.+.|
T Consensus 123 ~---------YT~hGHcGil~~~----------~g~idND~Tl~~Lak~Al~~A~AGADiVAPSdMMDGrV~aIR~aLd~ 183 (324)
T PF00490_consen 123 E---------YTSHGHCGILDDE----------DGEIDNDETLERLAKQALSHAEAGADIVAPSDMMDGRVGAIREALDE 183 (324)
T ss_dssp T---------TBTSSSSSEB-CT----------TSSBEHHHHHHHHHHHHHHHHHHT-SEEEE-S--TTHHHHHHHHHHH
T ss_pred c---------ccCCCceEEEECC----------CCeEecHHHHHHHHHHHHHHHHhCCCeeccccccCCHHHHHHHHHHh
Confidence 0 01247777652 1 12 23556678889999999999999987655433335555544
Q ss_pred ----CCCEEEeC
Q 022677 274 ----QIPTIGIG 281 (293)
Q Consensus 274 ----~iPtIGIG 281 (293)
++|+++.-
T Consensus 184 ~g~~~v~ImSYs 195 (324)
T PF00490_consen 184 AGFSDVPIMSYS 195 (324)
T ss_dssp TTCTTSEEEEEE
T ss_pred CCCCCccEEech
Confidence 57777664
No 404
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=83.92 E-value=18 Score=34.58 Aligned_cols=106 Identities=15% Similarity=0.239 Sum_probs=69.8
Q ss_pred cEEEE--ecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC---CCe-----EEeeCCC
Q 022677 93 PITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK---RPL-----LVGDLPF 162 (293)
Q Consensus 93 pi~m~--tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~---~p~-----vvaDmpf 162 (293)
|+.+= -+.|+-..+.+=++||+-+.. |...++++|-+..+|.|.+-+. .++ -++.-+-
T Consensus 79 PV~lHLDHg~~~e~i~~ai~~GftSVM~------------DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed 146 (285)
T PRK07709 79 PVAIHLDHGSSFEKCKEAIDAGFTSVMI------------DASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQED 146 (285)
T ss_pred cEEEECCCCCCHHHHHHHHHcCCCEEEE------------eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccC
Confidence 65443 356777777777888877776 4456899999999999877442 221 0111110
Q ss_pred C----C--CCCCHHHHHHHHHHHHHHhCCCEEEeCCCC---------CCcHHHHHHHHHc-CCcEEEec
Q 022677 163 G----T--YESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGHV 215 (293)
Q Consensus 163 G----s--y~~s~e~av~~A~rl~keaGa~gVkiEgg~---------~~~~~~ikal~~~-GIpV~GHi 215 (293)
+ . | .+||++ .+|+++.|+|++=+-=|. ..-.++++.|.+. +||.+=|=
T Consensus 147 ~~~~~~~~y-T~peeA----~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHG 210 (285)
T PRK07709 147 DVIAEGVIY-ADPAEC----KHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHG 210 (285)
T ss_pred CcccccccC-CCHHHH----HHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeC
Confidence 0 1 5 789998 568888999998776431 1334566666544 89999993
No 405
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=83.77 E-value=29 Score=30.23 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=51.8
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
.++.++++|+|.|=.+ .|-..-+++. .+++ ..++.+++.++.| +.+|+=. | ++++- .+.+.+.
T Consensus 16 ~~~~~~~~g~d~i~~~---~~Dg~~~~~~-~~~~----~~v~~i~~~~~~~-v~v~lm~--~--~~~~~----~~~~~~~ 78 (210)
T TIGR01163 16 EVKAVEEAGADWIHVD---VMDGHFVPNL-TFGP----PVLEALRKYTDLP-IDVHLMV--E--NPDRY----IEDFAEA 78 (210)
T ss_pred HHHHHHHcCCCEEEEc---CCCCCCCCCc-ccCH----HHHHHHHhcCCCc-EEEEeee--C--CHHHH----HHHHHHc
Confidence 4667889999999663 1100111221 2333 4456676555555 4466543 4 34443 3455579
Q ss_pred CCCEEEeCCCC-CCcHHHHHHHHHcCCcEE
Q 022677 184 GMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (293)
Q Consensus 184 Ga~gVkiEgg~-~~~~~~ikal~~~GIpV~ 212 (293)
|+++|.+=+.. +.....++.+...|+.+.
T Consensus 79 gadgv~vh~~~~~~~~~~~~~~~~~g~~~~ 108 (210)
T TIGR01163 79 GADIITVHPEASEHIHRLLQLIKDLGAKAG 108 (210)
T ss_pred CCCEEEEccCCchhHHHHHHHHHHcCCcEE
Confidence 99997776653 223455666777787653
No 406
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=83.75 E-value=29 Score=30.25 Aligned_cols=128 Identities=20% Similarity=0.234 Sum_probs=69.3
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhC
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaG 184 (293)
...+.++|+|.+-+. ..|.....+.+.+...+.+++..+.++++.| + . ++..+.|
T Consensus 27 ~~~~~~~gv~~v~lr---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~---~--------~~a~~~g 81 (212)
T PRK00043 27 VEAALEGGVTLVQLR---------EKGLDTRERLELARALKELCRRYGVPLIVND-----R---V--------DLALAVG 81 (212)
T ss_pred HHHHHhcCCCEEEEe---------CCCCCHHHHHHHHHHHHHHHHHhCCeEEEeC-----h---H--------HHHHHcC
Confidence 334566799998653 1122222233334445556655666655531 1 1 3334689
Q ss_pred CCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEec----C
Q 022677 185 MDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE----C 260 (293)
Q Consensus 185 a~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE----~ 260 (293)
+++|.+..... ....++.+...|+.+ |+ .-.| .+.++...+.|+|.|.+- .
T Consensus 82 ad~vh~~~~~~-~~~~~~~~~~~~~~~----g~-------------~~~t-------~~e~~~a~~~gaD~v~~~~~~~~ 136 (212)
T PRK00043 82 ADGVHLGQDDL-PVADARALLGPDAII----GL-------------STHT-------LEEAAAALAAGADYVGVGPIFPT 136 (212)
T ss_pred CCEEecCcccC-CHHHHHHHcCCCCEE----EE-------------eCCC-------HHHHHHHhHcCCCEEEECCccCC
Confidence 99999965321 122233232323221 10 1123 224455567899999862 2
Q ss_pred C-------C--HHHHHHHHHhcC-CCEEEeCC
Q 022677 261 V-------P--PPVAAAATSALQ-IPTIGIGA 282 (293)
Q Consensus 261 v-------p--~e~a~~It~~l~-iPtIGIGa 282 (293)
. + -+..+.+.+.++ +|++.+|+
T Consensus 137 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GG 168 (212)
T PRK00043 137 PTKKDAKAPQGLEGLREIRAAVGDIPIVAIGG 168 (212)
T ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCCEEEECC
Confidence 1 1 367788888888 99998885
No 407
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=83.71 E-value=17 Score=41.48 Aligned_cols=159 Identities=19% Similarity=0.166 Sum_probs=84.9
Q ss_pred HcCCcEEEECchhhhhhccCCCCccCC-HHHHHHH----HHHHHccc------CCCeEEeeCCCCC-------------C
Q 022677 110 SAGIDICLVGDSAAMVVHGHDTTLPIT-LEEMLVH----CRAVARGA------KRPLLVGDLPFGT-------------Y 165 (293)
Q Consensus 110 ~AG~DailvGdSla~~~lG~~dt~~vt-l~eml~h----~raV~Ra~------~~p~vvaDmpfGs-------------y 165 (293)
+||+|+|.| .+.++...++.+-+.-. ..|+... +|..+... ...||.++++=.+ |
T Consensus 76 ~AGADII~T-NTF~a~~~~L~~ygl~~~~~eln~~av~LAreAa~~~~~~~~~~~~~VAGSIGP~g~~~sl~p~~e~pg~ 154 (1229)
T PRK09490 76 EAGADIIET-NTFNATTIAQADYGMESLVYELNFAAARLAREAADEWTAKTPDKPRFVAGVLGPTNRTASISPDVNDPGF 154 (1229)
T ss_pred HHhCceeec-CCCCCCHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEecCCCCcccccCCCcccccc
Confidence 579998876 45555444433322111 2344333 33333221 1257778885322 1
Q ss_pred -CCCHHHHHHH---HHHHHHHhCCCEEEeCCCCCC--cHHHHHHHHH------cCCcEEEeccccceeeeecCCcccccC
Q 022677 166 -ESSTNQAVDT---AVRILKEGGMDAIKLEGGSPS--RITAARGIVE------AGIAVMGHVGLTPQAISVLGGFRPQGK 233 (293)
Q Consensus 166 -~~s~e~av~~---A~rl~keaGa~gVkiEgg~~~--~~~~ikal~~------~GIpV~GHiGLtPq~~~~lgGf~vqGr 233 (293)
..+.++..+. -++.+.++|||.+-+|=-... ....+.++.+ .++|++-.+-+... .|...-|.
T Consensus 155 ~~it~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~-----~Gr~lsG~ 229 (1229)
T PRK09490 155 RNVTFDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDA-----SGRTLSGQ 229 (1229)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECC-----CCccCCCC
Confidence 1234554333 233344799999999964321 1223333333 36999866443221 23444566
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEecCC--CH---HHHHHHHHhcCCCEEEe
Q 022677 234 NVTSAVKVVETALALQEVGCFSVVLECV--PP---PVAAAATSALQIPTIGI 280 (293)
Q Consensus 234 t~~~a~e~l~rA~a~eeAGA~~IvlE~v--p~---e~a~~It~~l~iPtIGI 280 (293)
+.+.+ ...++..|+++|=+=|. |+ +.++.+.+..+.|++..
T Consensus 230 ~~ea~------~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vy 275 (1229)
T PRK09490 230 TTEAF------WNSLRHAKPLSIGLNCALGADELRPYVEELSRIADTYVSAH 275 (1229)
T ss_pred cHHHH------HHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 64443 23345789999999998 33 44555555567888755
No 408
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=83.54 E-value=41 Score=31.82 Aligned_cols=110 Identities=20% Similarity=0.286 Sum_probs=65.1
Q ss_pred EEEEecCCHHHHHHHHHcCCcEE-EECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE------eeCCCCCCC
Q 022677 94 ITMVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV------GDLPFGTYE 166 (293)
Q Consensus 94 i~m~tayD~~SAriae~AG~Dai-lvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv------aDmpfGsy~ 166 (293)
+.-+++.|+.+|..|+++|+|=| |+. .+ . ..+..-|+..+.. +++..+.|+.+ +|+- |.
T Consensus 3 ~lEvcv~s~~~a~~A~~~GAdRiELc~-~L---~---~GGlTPS~g~i~~----~~~~~~ipv~vMIRPR~gdF~---Ys 68 (248)
T PRK11572 3 LLEICCYSMECALTAQQAGADRIELCA-AP---K---EGGLTPSLGVLKS----VRERVTIPVHPIIRPRGGDFC---YS 68 (248)
T ss_pred eEEEEECCHHHHHHHHHcCCCEEEEcc-Cc---C---CCCcCCCHHHHHH----HHHhcCCCeEEEEecCCCCCC---CC
Confidence 45689999999999999999999 664 22 1 1233344555433 33445666543 2433 32
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEe-----CCCCCCcHHHHHHHH--HcCCcEEEe--ccccc
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKL-----EGGSPSRITAARGIV--EAGIAVMGH--VGLTP 219 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVki-----Egg~~~~~~~ikal~--~~GIpV~GH--iGLtP 219 (293)
...-+....-++.+++.|++||-+ ++... .+..+.|. ..|.|+.=| |..++
T Consensus 69 ~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD--~~~~~~Li~~a~~~~vTFHRAfD~~~ 128 (248)
T PRK11572 69 DGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVD--MPRMRKIMAAAGPLAVTFHRAFDMCA 128 (248)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcC--HHHHHHHHHHhcCCceEEechhhccC
Confidence 222245555577788999999987 23221 23334443 236778777 34444
No 409
>PTZ00413 lipoate synthase; Provisional
Probab=83.49 E-value=33 Score=34.63 Aligned_cols=162 Identities=21% Similarity=0.298 Sum_probs=92.1
Q ss_pred CHHHHHHhhhCCCcEEEE---------ecCCHH------HHHHHHHc-----CCcEEEECchhhhhhccCCCCccCCHHH
Q 022677 80 TLTHLRQKHKNGEPITMV---------TAYDYP------SAVHLDSA-----GIDICLVGDSAAMVVHGHDTTLPITLEE 139 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~---------tayD~~------SAriae~A-----G~DailvGdSla~~~lG~~dt~~vtl~e 139 (293)
....++++.++.+.-+++ -||.-. +|-+.=.- +|..|.+. .|.+ ...++.+|
T Consensus 110 ~~~~~~~~~~~~~L~TVCeea~CPNi~EC~~~~~~~~~~tATfmilG~~CTr~C~FCaqs-------tg~~-p~~lD~eE 181 (398)
T PTZ00413 110 RFNRIRRSMREKKLHTVCEEAKCPNIGECWGGGDEEGTATATIMVMGDHCTRGCRFCSVK-------TSRK-PPPLDPNE 181 (398)
T ss_pred hHHHHHHHHHhCCCceeeCCCCCCChHHHhCCCCCCCCceeEeeecCCCCCCCCCCCCCC-------CCCC-CCCCCHHH
Confidence 567788877766655654 268777 66543110 23333332 2442 37789999
Q ss_pred HHHHHHHHHc-ccCCCeEE-ee---CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCC---cHHHHHHHHHcCCcE
Q 022677 140 MLVHCRAVAR-GAKRPLLV-GD---LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS---RITAARGIVEAGIAV 211 (293)
Q Consensus 140 ml~h~raV~R-a~~~p~vv-aD---mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~---~~~~ikal~~~GIpV 211 (293)
....++++.+ +....+|. +| +|-|+. ++.+++ ++.+++. ...++||--... ..+.++.|.++|..+
T Consensus 182 p~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga----~~~a~~-I~~Ir~~-~p~~~IevligDf~g~~e~l~~L~eAG~dv 255 (398)
T PTZ00413 182 PEKVAKAVAEMGVDYIVMTMVDRDDLPDGGA----SHVARC-VELIKES-NPELLLEALVGDFHGDLKSVEKLANSPLSV 255 (398)
T ss_pred HHHHHHHHHHcCCCEEEEEEEcCCCCChhhH----HHHHHH-HHHHHcc-CCCCeEEEcCCccccCHHHHHHHHhcCCCE
Confidence 9999999876 34323222 43 555433 344333 5566532 245666653211 245788899999999
Q ss_pred EEe-cc----cccee----eee--------------cCCccc-------ccCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 022677 212 MGH-VG----LTPQA----ISV--------------LGGFRP-------QGKNVTSAVKVVETALALQEVGCFSVVL 258 (293)
Q Consensus 212 ~GH-iG----LtPq~----~~~--------------lgGf~v-------qGrt~~~a~e~l~rA~a~eeAGA~~Ivl 258 (293)
+.| +. |.|.- .++ -+|..+ .|-|+ +|+++-+..+.+.|+|.+-+
T Consensus 256 ynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~---eEvie~m~dLrelGVDivtI 329 (398)
T PTZ00413 256 YAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETE---EEVRQTLRDLRTAGVSAVTL 329 (398)
T ss_pred EecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCH---HHHHHHHHHHHHcCCcEEee
Confidence 999 43 33310 000 012221 34443 45677777788889988876
No 410
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=83.34 E-value=24 Score=34.74 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCcEEEecC---------CC---------HHHHHHHHHhcCCCEEEeC
Q 022677 239 VKVVETALALQEVGCFSVVLEC---------VP---------PPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 239 ~e~l~rA~a~eeAGA~~IvlE~---------vp---------~e~a~~It~~l~iPtIGIG 281 (293)
++.++-++.++++|+|.|-+-+ .| .+.++.|.+.+++|+|+-|
T Consensus 252 e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G 312 (382)
T cd02931 252 EEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAG 312 (382)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeC
Confidence 4567778888999999997741 11 2567889999999999655
No 411
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=83.25 E-value=1.4 Score=38.46 Aligned_cols=42 Identities=26% Similarity=0.548 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCcEEEecCCCH-HHHHHHH-HhcCCCEEEeC
Q 022677 240 KVVETALALQEVGCFSVVLECVPP-PVAAAAT-SALQIPTIGIG 281 (293)
Q Consensus 240 e~l~rA~a~eeAGA~~IvlE~vp~-e~a~~It-~~l~iPtIGIG 281 (293)
.+++.++.+++.|+|+|++-|-.. .....+. +++++|++++.
T Consensus 53 ~~~~~~~~l~~~g~d~i~i~C~s~~~~~~~~~~~~~~iPv~~~~ 96 (216)
T PF01177_consen 53 RLIEAAEKLEKAGVDAIVIACNSAHPFVDELRKERVGIPVVGIV 96 (216)
T ss_dssp HHHHHHHHHHHTTESEEEESSHHHHHHHHHHHHHHHSSEEEESH
T ss_pred HHHHHHHHHHhCCCCEEEEcCCchhhhHHHHhhhcCceEEEecc
Confidence 777888999999999999999986 7888888 88999999864
No 412
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=83.21 E-value=43 Score=31.83 Aligned_cols=86 Identities=23% Similarity=0.336 Sum_probs=56.5
Q ss_pred HhCCCEEEeCCCCC-----------------CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHH
Q 022677 182 EGGMDAIKLEGGSP-----------------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVET 244 (293)
Q Consensus 182 eaGa~gVkiEgg~~-----------------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~r 244 (293)
+.|++.|.+-.... ...+.++...+.|+.|.+.+..+ ++ --.-|++ +.+.+++-
T Consensus 90 ~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~------~~-~~~~~~~--~~~~~~~~ 160 (287)
T PRK05692 90 AAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCV------LG-CPYEGEV--PPEAVADV 160 (287)
T ss_pred HcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEE------ec-CCCCCCC--CHHHHHHH
Confidence 57999999886431 13356777789999998775421 10 0012344 35678888
Q ss_pred HHHHHHcCCcEEEec-----CCCH---HHHHHHHHhcC-CC
Q 022677 245 ALALQEVGCFSVVLE-----CVPP---PVAAAATSALQ-IP 276 (293)
Q Consensus 245 A~a~eeAGA~~IvlE-----~vp~---e~a~~It~~l~-iP 276 (293)
+++++++||+.|.+. +.|. ++++.+.++++ +|
T Consensus 161 ~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~ 201 (287)
T PRK05692 161 AERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAER 201 (287)
T ss_pred HHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCe
Confidence 999999999999987 2353 55566666665 44
No 413
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=83.20 E-value=11 Score=35.21 Aligned_cols=21 Identities=5% Similarity=0.063 Sum_probs=14.2
Q ss_pred HHHHHHHHHc--CCcEEEecc-ccc
Q 022677 198 ITAARGIVEA--GIAVMGHVG-LTP 219 (293)
Q Consensus 198 ~~~ikal~~~--GIpV~GHiG-LtP 219 (293)
...++++.+. .+|+. |+. .+|
T Consensus 75 ~~~v~~ir~~~~~~plv-~m~Y~Np 98 (256)
T TIGR00262 75 FELLKKVRQKHPNIPIG-LLTYYNL 98 (256)
T ss_pred HHHHHHHHhcCCCCCEE-EEEeccH
Confidence 4567777753 78987 876 555
No 414
>PRK08999 hypothetical protein; Provisional
Probab=83.19 E-value=7.9 Score=36.33 Aligned_cols=104 Identities=21% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEecc
Q 022677 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG 216 (293)
Q Consensus 137 l~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiG 216 (293)
+...+.+.+.+++..+.+|++-| =.++..+.|++||++....
T Consensus 173 ~~~~~~~l~~~~~~~~~~liind----------------~~~la~~~~~~GvHl~~~d---------------------- 214 (312)
T PRK08999 173 YRALARAALGLCRRAGAQLLLNG----------------DPELAEDLGADGVHLTSAQ---------------------- 214 (312)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEC----------------cHHHHHhcCCCEEEcChhh----------------------
Q ss_pred ccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCC----------C--HHHHHHHHHhcCCCEEEeCC
Q 022677 217 LTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV----------P--PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 217 LtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~v----------p--~e~a~~It~~l~iPtIGIGa 282 (293)
+.+.....++..++.|.+ -.-++.++...+.|||-+++=.+ | -+..+.+.+.+++|++.||+
T Consensus 215 ~~~~~~r~~~~~~~ig~S----~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGG 288 (312)
T PRK08999 215 LAALAARPLPAGRWVAAS----CHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGG 288 (312)
T ss_pred cChHhhccCCCCCEEEEe----cCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECC
No 415
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=83.17 E-value=29 Score=34.03 Aligned_cols=137 Identities=13% Similarity=0.184 Sum_probs=86.4
Q ss_pred HHHHHHHHHcccCCCeEEeeCCCCCCC-------------CCHH----HHHHHHHHHHHHhCCCEEEeCCCCC-CcHHHH
Q 022677 140 MLVHCRAVARGAKRPLLVGDLPFGTYE-------------SSTN----QAVDTAVRILKEGGMDAIKLEGGSP-SRITAA 201 (293)
Q Consensus 140 ml~h~raV~Ra~~~p~vvaDmpfGsy~-------------~s~e----~av~~A~rl~keaGa~gVkiEgg~~-~~~~~i 201 (293)
+...+|.|++..+.-+|++|.=+=.|. .+.+ ...+.|+... ++|||.|--.|--. ++..+.
T Consensus 94 v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs~A-~AGADiVAPSdMMDGrV~aIR 172 (320)
T cd04824 94 VIQAIKLIREEFPELLIACDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVALAYA-KAGAHIVAPSDMMDGRVRAIK 172 (320)
T ss_pred HHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeECCCCcCcCHHHHHHHHHHHHHHH-HhCCCEEecccccccHHHHHH
Confidence 356678888888877788886332220 2223 3444555555 79999998775211 245667
Q ss_pred HHHHHcCC----cEEEeccccceeee-ecCCccc-------cc-C-----CHHHHHHHHHHHHHHHHcCCcEEEec-CCC
Q 022677 202 RGIVEAGI----AVMGHVGLTPQAIS-VLGGFRP-------QG-K-----NVTSAVKVVETALALQEVGCFSVVLE-CVP 262 (293)
Q Consensus 202 kal~~~GI----pV~GHiGLtPq~~~-~lgGf~v-------qG-r-----t~~~a~e~l~rA~a~eeAGA~~IvlE-~vp 262 (293)
++|.++|. ++|.+-. -..+ ..|=||- .| | +.....|+++.+..=.+=|||+|.+. ++|
T Consensus 173 ~aLD~~G~~~~v~ImSYsa---KyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~ 249 (320)
T cd04824 173 QALIQAGLGNKVSVMSYSA---KFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKPGTP 249 (320)
T ss_pred HHHHHCCCccCCeeeehHH---HhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcCCch
Confidence 77888776 4444421 1111 1111221 12 1 12234788988888889999999986 788
Q ss_pred -HHHHHHHHHhc-CCCEEEe
Q 022677 263 -PPVAAAATSAL-QIPTIGI 280 (293)
Q Consensus 263 -~e~a~~It~~l-~iPtIGI 280 (293)
-++++.+.++. ++|+...
T Consensus 250 YLDIi~~~k~~~~~~PvaaY 269 (320)
T cd04824 250 YLDIVREAKDKHPDLPLAVY 269 (320)
T ss_pred HHHHHHHHHHhccCCCEEEE
Confidence 69999999999 9999864
No 416
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=83.06 E-value=6.9 Score=37.82 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=57.0
Q ss_pred CcEEEEecCCHHHHHHHHHcCCcEEEEC-c-----hhh------------hhhccCCCCc--------cCCHHHHHHHHH
Q 022677 92 EPITMVTAYDYPSAVHLDSAGIDICLVG-D-----SAA------------MVVHGHDTTL--------PITLEEMLVHCR 145 (293)
Q Consensus 92 ~pi~m~tayD~~SAriae~AG~DailvG-d-----Sla------------~~~lG~~dt~--------~vtl~eml~h~r 145 (293)
+.+.|..|-+...|.-+.+.|+|+|-+. . -.- ....||.+-+ ..+++. .+
T Consensus 121 ~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~el----L~ 196 (293)
T PRK04180 121 TVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYEL----VK 196 (293)
T ss_pred CCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHH----HH
Confidence 5678999999999999999999999743 2 111 1156765432 233433 34
Q ss_pred HHHcccCCCeE-EeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 146 AVARGAKRPLL-VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 146 aV~Ra~~~p~v-vaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
.+++..+.|++ ++. |+. .+++++ .+++ +.||++|-+=.
T Consensus 197 ei~~~~~iPVV~~Ae---GGI-~TPeda----a~vm-e~GAdgVaVGS 235 (293)
T PRK04180 197 EVAELGRLPVVNFAA---GGI-ATPADA----ALMM-QLGADGVFVGS 235 (293)
T ss_pred HHHHhCCCCEEEEEe---CCC-CCHHHH----HHHH-HhCCCEEEEcH
Confidence 45555567744 244 566 477777 4566 58899987744
No 417
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=82.89 E-value=9.7 Score=38.31 Aligned_cols=123 Identities=19% Similarity=0.155 Sum_probs=80.4
Q ss_pred HHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC----CCCC-----CcHHHHHHH----HHc
Q 022677 141 LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE----GGSP-----SRITAARGI----VEA 207 (293)
Q Consensus 141 l~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE----gg~~-----~~~~~ikal----~~~ 207 (293)
+.=+|.+...-++| +++-+.--+-+.|+++..+-+.++. .+|+|-||=. ++.. ++....+++ .+-
T Consensus 131 i~G~R~llgv~~RP-LigtiiKP~~Glsp~~~a~~~y~~~-~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eT 208 (406)
T cd08207 131 IAGTRRLTGVEDRP-LIGTIIKPSVGLTPEETAALVRQLA-AAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRT 208 (406)
T ss_pred chhHHHHhCCCCCc-eEEEecccccCCCHHHHHHHHHHHH-hCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 34467777888889 5555544456679999999999988 6999999842 2221 111111111 122
Q ss_pred CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHHhcCCCEEEeCC
Q 022677 208 GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP--PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 208 GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp--~e~a~~It~~l~iPtIGIGa 282 (293)
|=+++ | . .--|. +.+++++|++...++|+.++.+-... -...+.+.+..++|+.+==|
T Consensus 209 G~~~~-y------~---------~NiT~-~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~l~IhaHra 268 (406)
T cd08207 209 GRKVM-Y------A---------FNITD-DIDEMRRNHDLVVEAGGTCVMVSLNSVGLSGLAALRRHSQLPIHGHRN 268 (406)
T ss_pred CCcce-E------E---------EecCC-CHHHHHHHHHHHHHhCCCeEEEeccccchHHHHHHHhcCCceEEECCC
Confidence 22221 0 0 11222 37899999999999999999998776 36778888888899884333
No 418
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=82.84 E-value=45 Score=31.86 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=92.2
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEee
Q 022677 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaD 159 (293)
-++-|++-+++=..-++.-.+|.-.+..+.+. +|++-+|.-+.- +| |++ +++.+ ++.| |.
T Consensus 69 GL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~-~DilQIgArn~r------n~------~LL---~a~g~-t~kp-V~-- 128 (264)
T PRK05198 69 GLKILQEVKETFGVPVLTDVHEPEQAAPVAEV-VDVLQIPAFLCR------QT------DLL---VAAAK-TGKV-VN-- 128 (264)
T ss_pred HHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh-CcEEEECchhcc------hH------HHH---HHHhc-cCCe-EE--
Confidence 45556665543333466788999999988887 999999944322 11 333 44544 4566 33
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC----------CcHHHHHHHHHcCCcEEEeccccceeeeecCCcc
Q 022677 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP----------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFR 229 (293)
Q Consensus 160 mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~----------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~ 229 (293)
+=-|-+ .++++-+-.|-++..++.=+.+-+|=|.. ...+. +.+.+.||+ +-|.+....+|=
T Consensus 129 lKrG~~-~t~~e~~~aaeyi~~~Gn~~vilcERG~tf~y~r~~~D~~~vp~---~k~~~lPVi----~DpSHsvq~pg~- 199 (264)
T PRK05198 129 IKKGQF-LAPWDMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPI---MRETGAPVI----FDATHSVQLPGG- 199 (264)
T ss_pred ecCCCc-CCHHHHHHHHHHHHHcCCCeEEEEeCCCCcCCCCeeechhhhHH---HhhCCCCEE----EeCCccccCCCC-
Confidence 333334 78998888777777544456677786631 12233 335667887 334332222210
Q ss_pred ccc-CCHHHHHHHHHHHHHHHHcCCcEEEecCCCH
Q 022677 230 PQG-KNVTSAVKVVETALALQEVGCFSVVLECVPP 263 (293)
Q Consensus 230 vqG-rt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~ 263 (293)
.| .+.-+-+-+.--|++-..+|||++|+|.-|.
T Consensus 200 -~~~~s~G~r~~v~~la~AAvA~GadGl~iEvHpd 233 (264)
T PRK05198 200 -QGGSSGGQREFVPVLARAAVAVGVAGLFIETHPD 233 (264)
T ss_pred -CCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 12 2222234455668899999999999998773
No 419
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=82.76 E-value=40 Score=31.21 Aligned_cols=149 Identities=15% Similarity=0.084 Sum_probs=88.5
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
.|+..++.|++.+.+=|.-++- |.++. ....+.|++.++.| +-+| |+. .|.|++ .+++ +.
T Consensus 36 ~a~~~~~~g~~~lhivDLd~a~--g~~~n--------~~~i~~i~~~~~~~-v~vg---GGI-rs~e~~----~~~l-~~ 95 (243)
T TIGR01919 36 AAKWWEQGGAEWIHLVDLDAAF--GGGNN--------EMMLEEVVKLLVVV-EELS---GGR-RDDSSL----RAAL-TG 95 (243)
T ss_pred HHHHHHhCCCeEEEEEECCCCC--CCcch--------HHHHHHHHHHCCCC-EEEc---CCC-CCHHHH----HHHH-Hc
Confidence 3455578899999775654442 44433 33456666666666 4555 667 577777 4577 68
Q ss_pred CCCEEEeCCCC-CCcHHHHHHHHHc-CCcEEEeccccceeeee-cCCc-c--cccCCHHHHHHHHHHHHHHHHcCCcEEE
Q 022677 184 GMDAIKLEGGS-PSRITAARGIVEA-GIAVMGHVGLTPQAISV-LGGF-R--PQGKNVTSAVKVVETALALQEVGCFSVV 257 (293)
Q Consensus 184 Ga~gVkiEgg~-~~~~~~ikal~~~-GIpV~GHiGLtPq~~~~-lgGf-~--vqGrt~~~a~e~l~rA~a~eeAGA~~Iv 257 (293)
||+-|-+ +.. ...+..++.+.+. |=.++- .| +.. -|.+ + ..|.++ ......+-++.+++.|+..++
T Consensus 96 Ga~~vvi-gT~a~~~p~~~~~~~~~~g~~ivv--sl----D~k~~g~~~~v~~~Gw~~-~~~~~~~~~~~~~~~g~~~ii 167 (243)
T TIGR01919 96 GRARVNG-GTAALENPWWAAAVIRYGGDIVAV--GL----DVLEDGEWHTLGNRGWSD-GGGDLEVLERLLDSGGCSRVV 167 (243)
T ss_pred CCCEEEE-CchhhCCHHHHHHHHHHccccEEE--EE----EEecCCceEEEECCCeec-CCCcHHHHHHHHHhCCCCEEE
Confidence 9998877 321 1234455555431 111221 11 111 1211 1 234333 334677788899999998888
Q ss_pred ec---------CCCHHHHHHHHHhcCCCEEEe
Q 022677 258 LE---------CVPPPVAAAATSALQIPTIGI 280 (293)
Q Consensus 258 lE---------~vp~e~a~~It~~l~iPtIGI 280 (293)
+- ++.-++.+.+.+..++|+|.=
T Consensus 168 ~tdI~~dGt~~G~d~~l~~~l~~~~~~pvias 199 (243)
T TIGR01919 168 VTDSKKDGLSGGPNELLLEVVAARTDAIVAAS 199 (243)
T ss_pred EEecCCcccCCCcCHHHHHHHHhhCCCCEEEE
Confidence 64 344589999999999999943
No 420
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=82.70 E-value=20 Score=30.34 Aligned_cols=96 Identities=20% Similarity=0.258 Sum_probs=56.2
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCC-ccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 79 ~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt-~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
.....+++.+..+ .++.+++++...++-+.+.|+|.+++|-..... ..+.. ...+++.+ +.+++..+.| ++
T Consensus 83 ~~~~~~~~~~~~~-~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~p-v~ 154 (196)
T cd00564 83 LPVAEARALLGPD-LIIGVSTHSLEEALRAEELGADYVGFGPVFPTP--TKPGAGPPLGLELL----REIAELVEIP-VV 154 (196)
T ss_pred CCHHHHHHHcCCC-CEEEeeCCCHHHHHHHhhcCCCEEEECCccCCC--CCCCCCCCCCHHHH----HHHHHhCCCC-EE
Confidence 3455566665434 467778888888888889999999885221100 01111 22333333 4454445666 66
Q ss_pred eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 158 aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
++ ||- +.++ +.+++ +.|+++|-+-.
T Consensus 155 a~---GGi--~~~~----i~~~~-~~Ga~~i~~g~ 179 (196)
T cd00564 155 AI---GGI--TPEN----AAEVL-AAGADGVAVIS 179 (196)
T ss_pred EE---CCC--CHHH----HHHHH-HcCCCEEEEeh
Confidence 66 544 4443 34555 68999998754
No 421
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=82.69 E-value=40 Score=31.76 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=35.4
Q ss_pred CCcEEEEecCCHHHH-------HHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCC
Q 022677 91 GEPITMVTAYDYPSA-------VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (293)
Q Consensus 91 g~pi~m~tayD~~SA-------riae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmp 161 (293)
..|+++++-|+.... +-+.++|+|-+++-| ++++|.-..... ++..+..++..=-|
T Consensus 91 ~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipD--------------LP~ee~~~~~~~-~~~~gi~~I~lv~P 153 (263)
T CHL00200 91 KAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPD--------------LPYEESDYLISV-CNLYNIELILLIAP 153 (263)
T ss_pred CCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecC--------------CCHHHHHHHHHH-HHHcCCCEEEEECC
Confidence 458899999886443 556788999999854 455665444444 45455554444334
No 422
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=82.66 E-value=3.4 Score=40.91 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCCCH---HHHHHHHHhcCCCEEE
Q 022677 236 TSAVKVVETALALQEVGCFSVVLECVPP---PVAAAATSALQIPTIG 279 (293)
Q Consensus 236 ~~a~e~l~rA~a~eeAGA~~IvlE~vp~---e~a~~It~~l~iPtIG 279 (293)
.+.+..+++.+++++|||+.+=+-+... +..+.|.+++++|++.
T Consensus 39 ~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvA 85 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVA 85 (360)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEE
Confidence 4678999999999999999998877663 6778899999999984
No 423
>PRK08508 biotin synthase; Provisional
Probab=82.66 E-value=17 Score=34.04 Aligned_cols=117 Identities=21% Similarity=0.179 Sum_probs=65.3
Q ss_pred HHHHHcCCcEE-EECchhhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 106 VHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 106 riae~AG~Dai-lvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~-~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
+.+.+.|+.-+ ++++.. ++++ -.++-+.+-++.|++.. +.. +.+- . ++ .+.|+. +.++++
T Consensus 50 ~~a~~~g~~~~~lv~sg~-----~~~~---~~~e~~~ei~~~ik~~~p~l~-i~~s--~-G~-~~~e~l-----~~Lk~a 111 (279)
T PRK08508 50 KMAKANGALGFCLVTSGR-----GLDD---KKLEYVAEAAKAVKKEVPGLH-LIAC--N-GT-ASVEQL-----KELKKA 111 (279)
T ss_pred HHHHHCCCCEEEEEeccC-----CCCc---ccHHHHHHHHHHHHhhCCCcE-EEec--C-CC-CCHHHH-----HHHHHc
Confidence 33444577655 443222 3333 36777888888887644 223 2222 2 34 355544 456689
Q ss_pred CCCEEEe--CCCC---------C---CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHH
Q 022677 184 GMDAIKL--EGGS---------P---SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (293)
Q Consensus 184 Ga~gVki--Egg~---------~---~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~e 249 (293)
|++.+++ |... . .....++.+.+.||++|.++= + | .|-|. ++.++.+..+.
T Consensus 112 Gld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I--------~-G---lGEt~---ed~~~~l~~lr 176 (279)
T PRK08508 112 GIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGI--------F-G---LGESW---EDRISFLKSLA 176 (279)
T ss_pred CCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeE--------E-e---cCCCH---HHHHHHHHHHH
Confidence 9999985 3321 0 122356667899999987620 1 1 35554 44555556666
Q ss_pred HcCCcE
Q 022677 250 EVGCFS 255 (293)
Q Consensus 250 eAGA~~ 255 (293)
+.|.+.
T Consensus 177 ~L~~~s 182 (279)
T PRK08508 177 SLSPHS 182 (279)
T ss_pred cCCCCE
Confidence 777773
No 424
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=82.59 E-value=3.8 Score=38.67 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecCC---------CHH-------HHHHHHHhcCCCE
Q 022677 237 SAVKVVETALALQEVGCFSVVLECV---------PPP-------VAAAATSALQIPT 277 (293)
Q Consensus 237 ~a~e~l~rA~a~eeAGA~~IvlE~v---------p~e-------~a~~It~~l~iPt 277 (293)
-.+.++++|++|+++|.|+|.+|-. +++ ++.++.+++++|+
T Consensus 27 iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~ 83 (254)
T PF03437_consen 27 IIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPV 83 (254)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 3578999999999999999999962 122 2335567788883
No 425
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=82.49 E-value=24 Score=33.88 Aligned_cols=108 Identities=13% Similarity=0.194 Sum_probs=70.2
Q ss_pred CCcEEEE--ecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc---CCCe-----EEeeC
Q 022677 91 GEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPL-----LVGDL 160 (293)
Q Consensus 91 g~pi~m~--tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~---~~p~-----vvaDm 160 (293)
+-|+.+= -+.|+-..+-+=++||+-+.+ |....+++|-+..++.|.+-+ +.++ .+..-
T Consensus 74 ~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~------------DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ 141 (283)
T PRK07998 74 DVPVSLHLDHGKTFEDVKQAVRAGFTSVMI------------DGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGK 141 (283)
T ss_pred CCCEEEECcCCCCHHHHHHHHHcCCCEEEE------------eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCc
Confidence 3454433 345666666666788887776 445689999999999987643 3331 01111
Q ss_pred CCC------CCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC--------CCcHHHHHHHHHc-CCcEEEec
Q 022677 161 PFG------TYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVEA-GIAVMGHV 215 (293)
Q Consensus 161 pfG------sy~~s~e~av~~A~rl~keaGa~gVkiEgg~--------~~~~~~ikal~~~-GIpV~GHi 215 (293)
+-+ .| .+|+++ .+|+++.|+|.+.+-=|. ..-.++++.|.++ ++|++=|=
T Consensus 142 ed~~~~~~~~~-T~pe~a----~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHG 206 (283)
T PRK07998 142 EDDHVSEADCK-TEPEKV----KDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHG 206 (283)
T ss_pred ccccccccccc-CCHHHH----HHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeC
Confidence 111 14 688888 678989999999887542 1225667777655 89999993
No 426
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=82.40 E-value=20 Score=32.04 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHc--CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHH
Q 022677 173 VDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA--GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQE 250 (293)
Q Consensus 173 v~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~--GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~ee 250 (293)
++...+.+++.|+++|-+-+ +-.++.+.+. ++++.+-.+++- -+ -+.++.|++
T Consensus 4 ~~~~l~~l~~~g~dgi~v~~-----~g~~~~~k~~~~~~~i~~~~~~nv-------------~N-------~~s~~~~~~ 58 (233)
T PF01136_consen 4 LEKYLDKLKELGVDGILVSN-----PGLLELLKELGPDLKIIADYSLNV-------------FN-------SESARFLKE 58 (233)
T ss_pred HHHHHHHHHhCCCCEEEEcC-----HHHHHHHHHhCCCCcEEEecCccC-------------CC-------HHHHHHHHH
Confidence 44445667789999999986 4557778888 677775433211 11 236788999
Q ss_pred cCCcEEEecC-CCHHHHHHHHHhc-CCCEEEeCCCCC
Q 022677 251 VGCFSVVLEC-VPPPVAAAATSAL-QIPTIGIGAGPF 285 (293)
Q Consensus 251 AGA~~IvlE~-vp~e~a~~It~~l-~iPtIGIGaG~~ 285 (293)
.|+..+++.- ++-+.++.|.+.. ++|+-.|.-|+-
T Consensus 59 ~G~~~i~ls~EL~~~ei~~i~~~~~~~~~Ev~v~G~~ 95 (233)
T PF01136_consen 59 LGASRITLSPELSLEEIKEIAENSPGVPLEVIVHGNL 95 (233)
T ss_pred cCCCEEEECccCCHHHHHHHHHhCCCCeEEEEEeCCc
Confidence 9999999874 5778889999999 777766655553
No 427
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.39 E-value=39 Score=30.82 Aligned_cols=146 Identities=20% Similarity=0.133 Sum_probs=93.7
Q ss_pred HhhhCCCcEEEEecCCHHHHH----HHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCC-C-eEEee
Q 022677 86 QKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-P-LLVGD 159 (293)
Q Consensus 86 ~l~~~g~pi~m~tayD~~SAr----iae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~-p-~vvaD 159 (293)
+...+.+.|.++...|.-.|. .+-+.|+.++=+.-.- ..-+...+.+++..+. | +++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~---------------~~a~~~i~~l~~~~~~~p~~~v-- 70 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTN---------------PFASEVIKELVELYKDDPEVLI-- 70 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC---------------ccHHHHHHHHHHHcCCCCCeEE--
Confidence 444555678888888876654 4456699998543211 1123444555543321 2 333
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHH
Q 022677 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAV 239 (293)
Q Consensus 160 mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~ 239 (293)
+-|+- .+++++ .+.+ ++||+-+--=+ ...++++...+.|||+.- | ..|..++.
T Consensus 71 -GaGTV-~~~~~~----~~a~-~aGA~FivsP~---~~~~v~~~~~~~~i~~iP-------------G----~~T~~E~~ 123 (213)
T PRK06552 71 -GAGTV-LDAVTA----RLAI-LAGAQFIVSPS---FNRETAKICNLYQIPYLP-------------G----CMTVTEIV 123 (213)
T ss_pred -eeeeC-CCHHHH----HHHH-HcCCCEEECCC---CCHHHHHHHHHcCCCEEC-------------C----cCCHHHHH
Confidence 23666 688887 3445 79999886443 247889999999999861 1 24544433
Q ss_pred HHHHHHHHHHHcCCcEEEe---cCCCHHHHHHHHHhcC-CCEEEeCC
Q 022677 240 KVVETALALQEVGCFSVVL---ECVPPPVAAAATSALQ-IPTIGIGA 282 (293)
Q Consensus 240 e~l~rA~a~eeAGA~~Ivl---E~vp~e~a~~It~~l~-iPtIGIGa 282 (293)
...++|||.|=+ +.+..+.++.+..-++ +|++-+|.
T Consensus 124 -------~A~~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~atGG 163 (213)
T PRK06552 124 -------TALEAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVTGG 163 (213)
T ss_pred -------HHHHcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEECC
Confidence 334699999887 5556788899999888 88887774
No 428
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=82.33 E-value=20 Score=32.94 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCCC--CcHHHHHHHHHc---CCcEEEeccccceeeeecCCcccccCCHHHHHHHH
Q 022677 168 STNQAVDTAVRILKEGGMDAIKLEGGSP--SRITAARGIVEA---GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVV 242 (293)
Q Consensus 168 s~e~av~~A~rl~keaGa~gVkiEgg~~--~~~~~ikal~~~---GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l 242 (293)
++++..+.+.+.+ +.|...+|+--|.. .....++++.++ +++++ .... ++-| .++++
T Consensus 85 ~~~~~~~~~~~~~-~~G~~~~KiKvg~~~~~d~~~v~~vr~~~g~~~~l~---------vDan-----~~~~---~~~a~ 146 (265)
T cd03315 85 EPAEVAEEARRAL-EAGFRTFKLKVGRDPARDVAVVAALREAVGDDAELR---------VDAN-----RGWT---PKQAI 146 (265)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEecCCCHHHHHHHHHHHHHhcCCCCEEE---------EeCC-----CCcC---HHHHH
Confidence 5788888887877 57999999975532 123456666652 22221 1112 2223 35677
Q ss_pred HHHHHHHHcCCcEEEecCCC--HHHHHHHHHhcCCCEEE
Q 022677 243 ETALALQEVGCFSVVLECVP--PPVAAAATSALQIPTIG 279 (293)
Q Consensus 243 ~rA~a~eeAGA~~IvlE~vp--~e~a~~It~~l~iPtIG 279 (293)
+-++++++.|.+.|.-++.+ .+..+.+++.+++|+.+
T Consensus 147 ~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~ 185 (265)
T cd03315 147 RALRALEDLGLDYVEQPLPADDLEGRAALARATDTPIMA 185 (265)
T ss_pred HHHHHHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEE
Confidence 77888888888777655555 47789999999999873
No 429
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=82.32 E-value=22 Score=40.36 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=76.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC---CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHH
Q 022677 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSP---SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (293)
Q Consensus 164 sy~~s~e~av~~A~rl~keaGa~gVkiEgg~~---~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e 240 (293)
+|..=+++.++.-++...+.|+|.+.|=|.-. .....++++.++|..+.|-|-. .|+..--.++....+-
T Consensus 618 gy~~ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~y-------t~~~~d~~~~~~~l~y 690 (1143)
T TIGR01235 618 GYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICY-------TGDILDPARPKYDLKY 690 (1143)
T ss_pred CccCCCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEE-------eccCCCcCCCCCCHHH
Confidence 35555788888888877789999999999742 2345678888999888776542 2222222344445667
Q ss_pred HHHHHHHHHHcCCcEEEecC-----CC---HHHHHHHHHhcCCCE
Q 022677 241 VVETALALQEVGCFSVVLEC-----VP---PPVAAAATSALQIPT 277 (293)
Q Consensus 241 ~l~rA~a~eeAGA~~IvlE~-----vp---~e~a~~It~~l~iPt 277 (293)
.++-|+.++++||+.|.+-= .| .++.+.|.+++++|+
T Consensus 691 ~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi 735 (1143)
T TIGR01235 691 YTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPI 735 (1143)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeE
Confidence 88899999999999999872 24 266777777778874
No 430
>PLN02489 homocysteine S-methyltransferase
Probab=82.32 E-value=38 Score=32.95 Aligned_cols=161 Identities=16% Similarity=0.059 Sum_probs=92.6
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCeEE
Q 022677 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLV 157 (293)
Q Consensus 79 ~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~-~~p~vv 157 (293)
+|..++++.|+. -++...++|+|+|+.- +.-+++|+...++.++... +.|+++
T Consensus 160 ~~~~e~~~~~~~-------------qi~~l~~~gvD~i~~E-------------T~~~l~E~~a~~~~~~~~~~~~p~~i 213 (335)
T PLN02489 160 VTLEKLKDFHRR-------------RLQVLAEAGPDLIAFE-------------TIPNKLEAQAYVELLEEENIKIPAWI 213 (335)
T ss_pred CCHHHHHHHHHH-------------HHHHHHhCCCCEEEEe-------------ccCChHHHHHHHHHHHHcCCCCeEEE
Confidence 788888888863 3445567999999974 2346778877777766443 467654
Q ss_pred -eeCCCC---CCCCCHHHHHHHHHHHHHH-hC--CCEEEeCCCCCCcHHHHHHHHHc-CCcEEEe--ccccceeeeecCC
Q 022677 158 -GDLPFG---TYESSTNQAVDTAVRILKE-GG--MDAIKLEGGSPSRITAARGIVEA-GIAVMGH--VGLTPQAISVLGG 227 (293)
Q Consensus 158 -aDmpfG---sy~~s~e~av~~A~rl~ke-aG--a~gVkiEgg~~~~~~~ikal~~~-GIpV~GH--iGLtPq~~~~lgG 227 (293)
...+-+ ..+.+.+++++. +++ .+ +-|+|+- +.+...++++.+... .+|+... -|+. .+...++
T Consensus 214 S~t~~~~~~l~~G~~~~~~~~~----~~~~~~~~~iGiNC~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~--~~~~~~~ 286 (335)
T PLN02489 214 SFNSKDGVNVVSGDSLLECASI----ADSCKKVVAVGINCT-PPRFIHGLILSIRKVTSKPIVVYPNSGET--YDGEAKE 286 (335)
T ss_pred EEEeCCCCccCCCCcHHHHHHH----HHhcCCceEEEecCC-CHHHHHHHHHHHHhhcCCcEEEECCCCCC--CCCccCc
Confidence 444333 234566666554 332 24 4668885 454456777777654 4565532 2321 1111222
Q ss_pred cccccCCHHHHHHHHHHHHHHHHcCCcEEEecC-CCHHHHHHHHHhcC
Q 022677 228 FRPQGKNVTSAVKVVETALALQEVGCFSVVLEC-VPPPVAAAATSALQ 274 (293)
Q Consensus 228 f~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~-vp~e~a~~It~~l~ 274 (293)
+.. . .+...++..+-++.+.+.|+..|===| +.++-++.|++.++
T Consensus 287 ~~~-~-~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI~al~~~l~ 332 (335)
T PLN02489 287 WVE-S-TGVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTIRAISKALS 332 (335)
T ss_pred ccC-C-CCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHHHHHHHHHh
Confidence 221 1 111234566778888999986443223 45777788888764
No 431
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=82.22 E-value=42 Score=31.10 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=89.1
Q ss_pred CHHH-HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHH
Q 022677 101 DYPS-AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (293)
Q Consensus 101 D~~S-Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl 179 (293)
|... |+..++.|+|-+.+=|-=++ .-|.+.. ....+.|++.+ .| +-+| |+. .|.|++ .++
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a-~~g~~~n--------~~~i~~i~~~~-~~-v~vG---GGI-rs~e~~----~~~ 91 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKA-IENSVEN--------LPVLEKLSEFA-EH-IQIG---GGI-RSLDYA----EKL 91 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-ccCCcch--------HHHHHHHHhhc-Cc-EEEe---cCC-CCHHHH----HHH
Confidence 4443 77778899999875464322 1243322 44456666655 46 5555 566 466666 567
Q ss_pred HHHhCCCEEEeCCCC-CCcHHHHHHHHHcCCcEEEeccccceeeeecCC-cccccCCHHHHHHHHHHHHHHHHcCCcEEE
Q 022677 180 LKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMGHVGLTPQAISVLGG-FRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (293)
Q Consensus 180 ~keaGa~gVkiEgg~-~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgG-f~vqGrt~~~a~e~l~rA~a~eeAGA~~Iv 257 (293)
+ +.||+-|-| |.. ...+..++.+.+.|-.++-=+. ..+| ....|-......+.++-++.+++.|+--++
T Consensus 92 l-~~Ga~rvvi-gT~a~~~p~~l~~~~~~~~~ivvslD-------~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii 162 (241)
T PRK14114 92 R-KLGYRRQIV-SSKVLEDPSFLKFLKEIDVEPVFSLD-------TRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIV 162 (241)
T ss_pred H-HCCCCEEEE-CchhhCCHHHHHHHHHhCCCEEEEEE-------ccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEE
Confidence 7 689998876 321 1234566767543322211111 1112 112231122234567788889999998877
Q ss_pred ec---------CCCHHHHHHHHHhcCCCEEEeC
Q 022677 258 LE---------CVPPPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 258 lE---------~vp~e~a~~It~~l~iPtIGIG 281 (293)
+- ++.-++.+.+++..++|+|.=|
T Consensus 163 ~tdI~rdGt~~G~d~el~~~l~~~~~~pviasG 195 (241)
T PRK14114 163 HTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAG 195 (241)
T ss_pred EEeechhhcCCCcCHHHHHHHHHHCCCCEEEEC
Confidence 65 3335899999999999999443
No 432
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=82.18 E-value=15 Score=33.32 Aligned_cols=93 Identities=17% Similarity=0.223 Sum_probs=64.0
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEE--ECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCC--
Q 022677 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP-- 154 (293)
Q Consensus 79 ~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dail--vGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p-- 154 (293)
--++.++.|.+.|-++.+-++|+...|.++-++|++.+. +| -+ .-+|. =.+ +++..+..+.+..+.+
T Consensus 89 ~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vg-R~--~~~g~-----dg~-~~i~~i~~~~~~~~~~tk 159 (211)
T cd00956 89 DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVG-RI--DDLGG-----DGM-ELIREIRTIFDNYGFDTK 159 (211)
T ss_pred hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecC-hH--hhcCC-----CHH-HHHHHHHHHHHHcCCCce
Confidence 347778888888988999999999999999999999974 44 11 12232 122 4455555666655433
Q ss_pred eEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 155 ~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
++. .|+ .|+.+.. +.+ ++|++.|++-
T Consensus 160 il~-----As~-r~~~ei~----~a~-~~Gad~vTv~ 185 (211)
T cd00956 160 ILA-----ASI-RNPQHVI----EAA-LAGADAITLP 185 (211)
T ss_pred EEe-----ccc-CCHHHHH----HHH-HcCCCEEEeC
Confidence 222 367 5888884 455 5899999995
No 433
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=82.17 E-value=34 Score=36.76 Aligned_cols=100 Identities=23% Similarity=0.205 Sum_probs=59.0
Q ss_pred CcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEE-Cc----------hhhhh-hccCCCCccCCHH----HH
Q 022677 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GD----------SAAMV-VHGHDTTLPITLE----EM 140 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dailv-Gd----------Sla~~-~lG~~dt~~vtl~----em 140 (293)
+.+|..++.+..+.= .-+|+.+.++|||.|=+ +. ...+. .-.| ++ +++ -.
T Consensus 539 ~~mt~~eI~~~i~~f----------~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~y--GG--slenR~r~~ 604 (765)
T PRK08255 539 REMTRADMDRVRDDF----------VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEY--GG--SLENRLRYP 604 (765)
T ss_pred CcCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCC--CC--CHHHHhHHH
Confidence 568888888776531 13788889999999943 21 11111 0011 12 333 44
Q ss_pred HHHHHHHHcccCC--CeEE----eeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 022677 141 LVHCRAVARGAKR--PLLV----GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (293)
Q Consensus 141 l~h~raV~Ra~~~--p~vv----aDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg 193 (293)
++.+++|+.+.+. |+.+ .|..-++ .+.+++++.+..+ ++.|+|.|.+-.|
T Consensus 605 ~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g--~~~~~~~~~~~~l-~~~g~d~i~vs~g 660 (765)
T PRK08255 605 LEVFRAVRAVWPAEKPMSVRISAHDWVEGG--NTPDDAVEIARAF-KAAGADLIDVSSG 660 (765)
T ss_pred HHHHHHHHHhcCCCCeeEEEEccccccCCC--CCHHHHHHHHHHH-HhcCCcEEEeCCC
Confidence 5666677666543 3222 2322233 3688898887665 5789999999754
No 434
>PRK10481 hypothetical protein; Provisional
Probab=82.09 E-value=2.9 Score=38.78 Aligned_cols=171 Identities=16% Similarity=0.215 Sum_probs=94.8
Q ss_pred HHHHHHhhhCCCcEEEEecCCHHHHHHH-----HHcCCcEEEECchhhhhhccCCCCccCCHH--HHHHHHHHHHc----
Q 022677 81 LTHLRQKHKNGEPITMVTAYDYPSAVHL-----DSAGIDICLVGDSAAMVVHGHDTTLPITLE--EMLVHCRAVAR---- 149 (293)
Q Consensus 81 ~~~Lr~l~~~g~pi~m~tayD~~SAria-----e~AG~DailvGdSla~~~lG~~dt~~vtl~--eml~h~raV~R---- 149 (293)
+++|......+ .|+-.++-|-.|..=+ =..|=+.+.+ -+.|+..+.+. ....+.+....
T Consensus 19 ~p~i~~~l~~~-~i~~~g~Ld~l~~~ei~~~~ap~~~~~~lvt---------rL~dG~~v~~s~~~v~~~lq~~i~~l~~ 88 (224)
T PRK10481 19 LPLLTEYLDED-EITHAGLLDGLSREEIMAAYAPEAGEDVLVT---------RLNDGQQVHVSKQKVERDLQSVIEVLDN 88 (224)
T ss_pred hHHHHHhcCCc-ceEEecccCCCCHHHHHHhcCCCCCCceeEE---------EecCCCEEEEEHHHHHHHHHHHHHHHHh
Confidence 34566655555 7999999998886433 2335444444 36677766654 23334443322
Q ss_pred -ccCCCeEE--eeCCCCCCCC-C-----HHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccce
Q 022677 150 -GAKRPLLV--GDLPFGTYES-S-----TNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQ 220 (293)
Q Consensus 150 -a~~~p~vv--aDmpfGsy~~-s-----~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq 220 (293)
+.+.-++. +|+| ++.. + |...+...+..+..++--||-.=. .+......++....|++++ +..
T Consensus 89 ~g~d~ivl~Ctgdfp--~l~a~r~~l~~P~~~i~~lv~Al~~g~riGVitP~-~~qi~~~~~kw~~~G~~v~--~~~--- 160 (224)
T PRK10481 89 QGYDVILLLCTGEFP--SLTARNAILLEPSRILPPLVAAIVGGHQVGVIVPV-EEQLAQQAQKWQVLQKPPV--FAL--- 160 (224)
T ss_pred CCCCEEEEEecCCCC--CccccCccccCchhhHHHHHHHhcCCCeEEEEEeC-HHHHHHHHHHHHhcCCcee--Eee---
Confidence 23222222 4544 3322 1 455554444444222112221111 1112333444445577776 110
Q ss_pred eeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHHhcCCCEEE
Q 022677 221 AISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP--PPVAAAATSALQIPTIG 279 (293)
Q Consensus 221 ~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp--~e~a~~It~~l~iPtIG 279 (293)
...| . ....++++.++++.+.|||+||+-|+- .+....+-+.+++|+|-
T Consensus 161 ----aspy--~----~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 161 ----ASPY--H----GSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLL 211 (224)
T ss_pred ----cCCC--C----CCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEc
Confidence 1122 1 233578888999999999999999987 48889999999999983
No 435
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=82.06 E-value=25 Score=35.53 Aligned_cols=123 Identities=17% Similarity=0.155 Sum_probs=78.3
Q ss_pred HHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC----CCCC-----CcHHHHHHH----HHc
Q 022677 141 LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE----GGSP-----SRITAARGI----VEA 207 (293)
Q Consensus 141 l~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE----gg~~-----~~~~~ikal----~~~ 207 (293)
+.=+|.+...-++| +++-+.--..+.|+++..+-+.++. .+|+|-||=- ++.. ++....+++ .+.
T Consensus 132 i~G~R~~lgv~~RP-L~gtiiKP~~Glsp~~~a~~~~~~~-~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eT 209 (412)
T TIGR03326 132 IEGVREFLGIKDRP-LLGTVPKPKVGLSTEEHAKVAYELW-SGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAET 209 (412)
T ss_pred chhHHHHhCCCCCc-eEEeeccccccCChHHHHHHHHHHH-hcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 33456777777788 5655555556789999999999988 6999999842 2221 111111222 112
Q ss_pred CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHH---hcCCCEEEeCC
Q 022677 208 GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP--PPVAAAATS---ALQIPTIGIGA 282 (293)
Q Consensus 208 GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp--~e~a~~It~---~l~iPtIGIGa 282 (293)
|=+++ |. .--|. +.+++++|++..+++|+.++.+-... -...+.+.+ ..++|+.+==|
T Consensus 210 G~~~~---------------ya-~NiT~-~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ih~Hra 272 (412)
T TIGR03326 210 GERKE---------------YL-ANITA-PVREMERRAELVADLGGQYVMVDVVVCGWSALQYIRELTEDLGLAIHAHRA 272 (412)
T ss_pred CCcce---------------EE-EEecC-CHHHHHHHHHHHHHhCCCeEEEEeeccchHHHHHHHHhhccCCeEEEEcCC
Confidence 22221 10 01122 35899999999999999999988766 255566665 67899986333
No 436
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=82.04 E-value=18 Score=35.48 Aligned_cols=137 Identities=18% Similarity=0.287 Sum_probs=86.9
Q ss_pred HHHHHHHHHcccCCCeEEeeCCCCCCC------------CCHH----HHHHHHHHHHHHhCCCEEEeCCCCC-CcHHHHH
Q 022677 140 MLVHCRAVARGAKRPLLVGDLPFGTYE------------SSTN----QAVDTAVRILKEGGMDAIKLEGGSP-SRITAAR 202 (293)
Q Consensus 140 ml~h~raV~Ra~~~p~vvaDmpfGsy~------------~s~e----~av~~A~rl~keaGa~gVkiEgg~~-~~~~~ik 202 (293)
+...+|.++...+.-+|++|.=+=.|. .+.+ ...+.|+... ++|||.|--.|--. ++..+.+
T Consensus 101 v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~~g~i~ND~Tl~~L~~~Als~A-~AGADiVAPSdMMDGrV~aIR~ 179 (322)
T PRK13384 101 LARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLHNDEVDNDATVENLVKQSVTAA-KAGADMLAPSAMMDGQVKAIRQ 179 (322)
T ss_pred HHHHHHHHHHHCCCeEEEeeeecccCCCCCceeeccCCcCccHHHHHHHHHHHHHHH-HcCCCeEecccccccHHHHHHH
Confidence 456778888888887788886433221 2223 3444455544 79999998775211 2456677
Q ss_pred HHHHcCCcEEEeccccceee---e-ecCCccc------cc-CC-----HHHHHHHHHHHHHHHHcCCcEEEec-CCC-HH
Q 022677 203 GIVEAGIAVMGHVGLTPQAI---S-VLGGFRP------QG-KN-----VTSAVKVVETALALQEVGCFSVVLE-CVP-PP 264 (293)
Q Consensus 203 al~~~GIpV~GHiGLtPq~~---~-~lgGf~v------qG-rt-----~~~a~e~l~rA~a~eeAGA~~IvlE-~vp-~e 264 (293)
+|.++|.. |+++.+-.. + ..|=||- +| |. .....|+++.+..=.+=|||+|.+. ++| -+
T Consensus 180 aLd~~g~~---~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YLD 256 (322)
T PRK13384 180 GLDAAGFE---HVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKPGTPYLD 256 (322)
T ss_pred HHHHCCCC---CCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcCCchHHH
Confidence 78887752 333333211 1 1122221 12 11 1224688888888889999999986 788 69
Q ss_pred HHHHHHHhcCCCEEEe
Q 022677 265 VAAAATSALQIPTIGI 280 (293)
Q Consensus 265 ~a~~It~~l~iPtIGI 280 (293)
+++.+.++.++|+...
T Consensus 257 Ii~~~k~~~~lPvaaY 272 (322)
T PRK13384 257 VLSRLRQETHLPLAAY 272 (322)
T ss_pred HHHHHHhccCCCEEEE
Confidence 9999999999999864
No 437
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=81.96 E-value=20 Score=32.29 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCcEEEECch-hhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDICLVGDS-AAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 103 ~SAriae~AG~DailvGdS-la~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~k 181 (293)
..++.++++|+|.+.+.+- -....-| .. +...+.+++.++.|++.+ |+. .|.+++ .+.++
T Consensus 157 ~~~~~~~~~G~d~i~i~~i~~~g~~~g------~~----~~~~~~i~~~~~ipvia~----GGi-~s~~di----~~~l~ 217 (232)
T TIGR03572 157 EWAREAEQLGAGEILLNSIDRDGTMKG------YD----LELIKTVSDAVSIPVIAL----GGA-GSLDDL----VEVAL 217 (232)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCcCC------CC----HHHHHHHHhhCCCCEEEE----CCC-CCHHHH----HHHHH
Confidence 5678889999999987651 1111122 22 334566777778885443 444 367776 34456
Q ss_pred HhCCCEEEe
Q 022677 182 EGGMDAIKL 190 (293)
Q Consensus 182 eaGa~gVki 190 (293)
+.||++|-+
T Consensus 218 ~~gadgV~v 226 (232)
T TIGR03572 218 EAGASAVAA 226 (232)
T ss_pred HcCCCEEEE
Confidence 789999976
No 438
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=81.83 E-value=12 Score=37.73 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=78.3
Q ss_pred HHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEe----CCCCCC-cHHHHH-------HHH-Hc
Q 022677 141 LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL----EGGSPS-RITAAR-------GIV-EA 207 (293)
Q Consensus 141 l~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVki----Egg~~~-~~~~ik-------al~-~~ 207 (293)
+.=+|.+...-++|++. -+.-+.-+.|+++..+-+.++. .+|+|-||= .++... ..+.++ +.. +.
T Consensus 127 I~G~R~~lgv~~RPL~~-tiiKp~~Gl~~~~~A~~~y~~~-~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eT 204 (407)
T TIGR03332 127 IDGIRKLLGVHERPLLM-SIFKGMIGRDLGYLKEQLRQQA-LGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQT 204 (407)
T ss_pred chHHHHHhCCCCCceeE-eEeCCccCCCHHHHHHHHHHHh-ccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44467777888899554 4554566789999988888888 699999983 233210 011111 111 12
Q ss_pred CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHH--hcCCCEEEeCCC
Q 022677 208 GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP--PPVAAAATS--ALQIPTIGIGAG 283 (293)
Q Consensus 208 GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp--~e~a~~It~--~l~iPtIGIGaG 283 (293)
|=+++ | . +-+-| +..++++|++..+++|+.++.+.-.. -...+.+++ .+++|+.+==|+
T Consensus 205 G~~~~-y----------~--~NiT~----~~~em~~ra~~a~~~G~~~~mv~~~~~G~~~~~~l~~~~~~~lpihaHra~ 267 (407)
T TIGR03332 205 GHKTL-Y----------A--VNLTG----RTFDLKDKAKRAAELGADVLLFNVFAYGLDVLQSLAEDDEIPVPIMAHPAV 267 (407)
T ss_pred CCcce-E----------e--ecCCC----CHHHHHHHHHHHHHhCCCEEEEeccccChHHHHHHHhcCCCCcEEEEecCc
Confidence 22221 1 0 01122 23579999999999999999999776 366788887 677888654333
No 439
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=81.78 E-value=40 Score=30.54 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=84.6
Q ss_pred HcCCcEE-EECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE-e--eCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 022677 110 SAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-G--DLPFGTYESSTNQAVDTAVRILKEGGM 185 (293)
Q Consensus 110 ~AG~Dai-lvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv-a--DmpfGsy~~s~e~av~~A~rl~keaGa 185 (293)
..|+|++ +-=|.+.. ..+. -.+.+++...+.++ .+.|++. . --+=|.|..+.++-++--.++....++
T Consensus 22 ~~~aD~vElRlD~l~~----~~~~--~~~~~~~~~~~~~~--~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~ 93 (228)
T TIGR01093 22 CKGADIVELRVDLLKD----PSSN--NDVDALIEQLSQLR--PDKPLIFTIRTISEGGKFPGNEEEYLEELKRAADSPGP 93 (228)
T ss_pred ccCCCEEEEEechhcc----cCcH--HHHHHHHHHHHHhc--CCCcEEEEECChhhCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 4689998 42255311 1111 12345555555554 4567554 1 122244655666555443344346789
Q ss_pred CEEEeCCCCC--CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC-
Q 022677 186 DAIKLEGGSP--SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP- 262 (293)
Q Consensus 186 ~gVkiEgg~~--~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp- 262 (293)
+.|=+|=... ....+++.+.+.|+++.++.- .| .+|... +++.+..+..++.|||.+=+=+.|
T Consensus 94 d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H----------~f---~~tp~~-~~l~~~~~~~~~~gaDivKia~~a~ 159 (228)
T TIGR01093 94 DFVDIELFLPDDAVKELINIAKKGGTKIIMSYH----------DF---QKTPSW-EEIVERLEKALSYGADIVKIAVMAN 159 (228)
T ss_pred CEEEEEccCCHHHHHHHHHHHHHCCCEEEEecc----------CC---CCCCCH-HHHHHHHHHHHHhCCCEEEEEeccC
Confidence 9999995321 122334545678999987621 12 233222 345566667778999998776665
Q ss_pred --HHHHHH--HHH----hcCCCEEEeCCCCC
Q 022677 263 --PPVAAA--ATS----ALQIPTIGIGAGPF 285 (293)
Q Consensus 263 --~e~a~~--It~----~l~iPtIGIGaG~~ 285 (293)
.++.+. ++. ..++|+|.|+=|+.
T Consensus 160 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~ 190 (228)
T TIGR01093 160 SKEDVLTLLEITNKVDEHADVPLITMSMGDR 190 (228)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 232222 222 23589999998875
No 440
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=81.55 E-value=17 Score=32.90 Aligned_cols=133 Identities=24% Similarity=0.287 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHc---ccCCCeEEeeCCCCCCC---CCHHHHHHH
Q 022677 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR---GAKRPLLVGDLPFGTYE---SSTNQAVDT 175 (293)
Q Consensus 102 ~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~R---a~~~p~vvaDmpfGsy~---~s~e~av~~ 175 (293)
..+++.+-+.|+|.|-+-=..+.. + +. .+++++...++|++ ....|+++=-.+.+ .+ ....+.+..
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~--~--~~---~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~-~~~~~~~~~~~I~~ 150 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGAL--G--SG---NEDEVIEEIAAVVEECHKYGLKVILEPYLRG-EEVADEKKPDLIAR 150 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHH--H--TT---HHHHHHHHHHHHHHHHHTSEEEEEEEECECH-HHBSSTTHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeecccccc--c--cc---cHHHHHHHHHHHHHHHhcCCcEEEEEEecCc-hhhcccccHHHHHH
Confidence 677888888999999432122111 1 11 15555555555544 45677555422221 10 001236788
Q ss_pred HHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHH-cCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHH
Q 022677 176 AVRILKEGGMDAIKLEGGSP-----SRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (293)
Q Consensus 176 A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~-~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~e 249 (293)
+.|+..+.|||-||.+=+.. .....++.+++ ..+| +++++. ..| |-+.++..+.++.|..+.
T Consensus 151 a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p--~~~~Vk-----~sG-----Gi~~~~~~~~l~~a~~~i 218 (236)
T PF01791_consen 151 AARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVP--GKVGVK-----ASG-----GIDAEDFLRTLEDALEFI 218 (236)
T ss_dssp HHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSST--TTSEEE-----EES-----SSSHHHHHHSHHHHHHHH
T ss_pred HHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCC--cceEEE-----EeC-----CCChHHHHHHHHHHHHHH
Confidence 88887799999999987610 01233333443 4444 111110 123 236677788999999999
Q ss_pred HcCCc
Q 022677 250 EVGCF 254 (293)
Q Consensus 250 eAGA~ 254 (293)
++||+
T Consensus 219 ~aGa~ 223 (236)
T PF01791_consen 219 EAGAD 223 (236)
T ss_dssp HTTHS
T ss_pred HcCCh
Confidence 99994
No 441
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=81.53 E-value=23 Score=35.53 Aligned_cols=124 Identities=17% Similarity=0.168 Sum_probs=79.6
Q ss_pred HHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC----CCCC-----CcHHHHHHH---H-Hc
Q 022677 141 LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE----GGSP-----SRITAARGI---V-EA 207 (293)
Q Consensus 141 l~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE----gg~~-----~~~~~ikal---~-~~ 207 (293)
+.=+|.+...-++| +++-+.--+-+.|+++..+-+.++. .+|+|-||=. ++.. ++....+++ . +.
T Consensus 112 i~G~R~~lgv~~RP-L~~tiiKP~~Glsp~~~a~~~y~~~-~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eT 189 (391)
T cd08209 112 IEGIRQRLGVHDRP-LLMSIFKGVLGLDLDDLAEQLREQA-LGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQT 189 (391)
T ss_pred chHHHHHhCCCCCc-eEEeeeccccCCCHHHHHHHHHHHH-hCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34467787888889 5555554456679999999999988 6999999832 3321 111111111 1 12
Q ss_pred CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHH--hcCCCEEEeCCC
Q 022677 208 GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP--PPVAAAATS--ALQIPTIGIGAG 283 (293)
Q Consensus 208 GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp--~e~a~~It~--~l~iPtIGIGaG 283 (293)
|=+++ |. .--|. +.+++++|++..+++|+.++.+-... -...+.+++ .+++|+.+==|+
T Consensus 190 G~~~~---------------ya-~NiT~-~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~lpIhaHra~ 252 (391)
T cd08209 190 GRRTL---------------YA-VNLTG-PVFTLKEKARRLVEAGANALLFNVFAYGLDVLEALASDPEINVPIFAHPAF 252 (391)
T ss_pred CCcce---------------EE-EEcCC-CHHHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHhcCcCCcEEEecCCc
Confidence 22221 10 01122 35899999999999999999998776 366788888 678888854333
No 442
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=81.32 E-value=21 Score=34.07 Aligned_cols=94 Identities=23% Similarity=0.300 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCCC--------CcHHHHHHHHHc---CCcEEEeccccceeeeecCCcccccCCHH
Q 022677 168 STNQAVDTAVRILKEGGMDAIKLEGGSP--------SRITAARGIVEA---GIAVMGHVGLTPQAISVLGGFRPQGKNVT 236 (293)
Q Consensus 168 s~e~av~~A~rl~keaGa~gVkiEgg~~--------~~~~~ikal~~~---GIpV~GHiGLtPq~~~~lgGf~vqGrt~~ 236 (293)
++++.++.+.++. +.|.+++||--|.. ...+.++++.++ +++++- ... ++-+.
T Consensus 139 ~~~~~~~~a~~~~-~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~v---------DaN-----~~~~~- 202 (357)
T cd03316 139 SPEELAEEAKRAV-AEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMV---------DAN-----GRWDL- 202 (357)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEE---------ECC-----CCCCH-
Confidence 6888888887776 68999999975532 123556666652 333331 111 23343
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHHhcCCCEEE
Q 022677 237 SAVKVVETALALQEVGCFSVVLECVP--PPVAAAATSALQIPTIG 279 (293)
Q Consensus 237 ~a~e~l~rA~a~eeAGA~~IvlE~vp--~e~a~~It~~l~iPtIG 279 (293)
+++++-++++++.|.+.+.=++.+ -+..+.|.+++++|++.
T Consensus 203 --~~a~~~~~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~ipi~~ 245 (357)
T cd03316 203 --AEAIRLARALEEYDLFWFEEPVPPDDLEGLARLRQATSVPIAA 245 (357)
T ss_pred --HHHHHHHHHhCccCCCeEcCCCCccCHHHHHHHHHhCCCCEEe
Confidence 456667777777776544422333 36778999999999773
No 443
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=81.30 E-value=25 Score=34.11 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCcEEEecC---------CC---HHHHHHHHHhc--CCCEEEeCC
Q 022677 239 VKVVETALALQEVGCFSVVLEC---------VP---PPVAAAATSAL--QIPTIGIGA 282 (293)
Q Consensus 239 ~e~l~rA~a~eeAGA~~IvlE~---------vp---~e~a~~It~~l--~iPtIGIGa 282 (293)
++.++-++.++++|+|.|-+-+ .+ .+.++.+.+.+ ++|+|+.|.
T Consensus 235 ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Gg 292 (353)
T cd04735 235 EDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGS 292 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECC
Confidence 4567888888999999998742 01 24567777776 799997764
No 444
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=81.29 E-value=16 Score=35.76 Aligned_cols=136 Identities=10% Similarity=0.059 Sum_probs=87.5
Q ss_pred hhccCCCCccCCHHHHHHHHHHHHc-ccCCCeEEee-----CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcH
Q 022677 125 VVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLVGD-----LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRI 198 (293)
Q Consensus 125 ~~lG~~dt~~vtl~eml~h~raV~R-a~~~p~vvaD-----mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~ 198 (293)
-.-.+|.....+.+.++.+++...+ |.+ .++..- -+.|+...+++..+..|+|.+|+.=-+.+-+-|-. ..
T Consensus 48 ~I~smPg~~r~sid~l~~~~~~~~~~Gi~-~v~lFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVc--Lc 124 (322)
T PRK13384 48 PISTLPGISRLPESALADEIERLYALGIR-YVMPFGISHHKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDIC--FC 124 (322)
T ss_pred ecCCCCCcceECHHHHHHHHHHHHHcCCC-EEEEeCCCCCCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeee--cc
Confidence 3567888889999999988888765 332 323222 23466656677778888888886544555555532 01
Q ss_pred HHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhc-----
Q 022677 199 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSAL----- 273 (293)
Q Consensus 199 ~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l----- 273 (293)
+ ----||.|+.- +|. =.+++..+.+.+.|..+.+||||+|=.-.+=+--...|.+.|
T Consensus 125 ~---------YT~hGHcGil~------~g~---i~ND~Tl~~L~~~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~ 186 (322)
T PRK13384 125 E---------YTDHGHCGVLH------NDE---VDNDATVENLVKQSVTAAKAGADMLAPSAMMDGQVKAIRQGLDAAGF 186 (322)
T ss_pred c---------CCCCCceeecc------CCc---CccHHHHHHHHHHHHHHHHcCCCeEecccccccHHHHHHHHHHHCCC
Confidence 1 01357888662 121 135677788999999999999999876655444446666665
Q ss_pred -CCCEEEeC
Q 022677 274 -QIPTIGIG 281 (293)
Q Consensus 274 -~iPtIGIG 281 (293)
++|+++.-
T Consensus 187 ~~v~ImSYs 195 (322)
T PRK13384 187 EHVAILAHS 195 (322)
T ss_pred CCCceeehh
Confidence 47777653
No 445
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=81.19 E-value=36 Score=29.70 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=20.3
Q ss_pred HHHHHHcCCcEEEecCCC-HHHHHHHHHhc
Q 022677 245 ALALQEVGCFSVVLECVP-PPVAAAATSAL 273 (293)
Q Consensus 245 A~a~eeAGA~~IvlE~vp-~e~a~~It~~l 273 (293)
.+.|+|.|.+.+|-+..+ .+.+..+-..+
T Consensus 108 ~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 108 YQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred HHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 567788888888888887 45555555444
No 446
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=81.14 E-value=28 Score=31.39 Aligned_cols=116 Identities=25% Similarity=0.256 Sum_probs=64.3
Q ss_pred eEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHc----CCcEEEeccccceeeeecCCccc
Q 022677 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA----GIAVMGHVGLTPQAISVLGGFRP 230 (293)
Q Consensus 155 ~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~----GIpV~GHiGLtPq~~~~lgGf~v 230 (293)
.++.|+=++ +.-+++..+.+...+.|+|++.+-+... ...++.+.+. +-.+++=.-++.. +....
T Consensus 51 ~i~~DlK~~----DIg~tv~~~~~~~~~~gad~~Tvh~~~G--~~~l~~~~~~~~~~~~~~~~v~~lss~-----~~~~~ 119 (216)
T cd04725 51 LVFLDLKLG----DIPNTVAAAAEALLGLGADAVTVHPYGG--SDMLKAALEAAEEKGKGLFAVTVLSSP-----GALDL 119 (216)
T ss_pred cEEEEeecC----chHHHHHHHHHHHHhcCCCEEEECCcCC--HHHHHHHHHHHhccCCeEEEEEcCCCC-----CHHHH
Confidence 388999984 4445666555555578999999987432 3344444432 3333332222211 11111
Q ss_pred c-cCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEE--EeCC
Q 022677 231 Q-GKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTI--GIGA 282 (293)
Q Consensus 231 q-Grt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtI--GIGa 282 (293)
| +.+...-.-.++.++.-+++|+++++.-....+.+++... -+.+++ |||+
T Consensus 120 q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~~~~i~~~~~-~~~~~ltPGI~~ 173 (216)
T cd04725 120 QEGIPGSLEDLVERLAKLAREAGVDGVVCGATEPEALRRALG-PDFLILTPGIGA 173 (216)
T ss_pred HhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcchHHHHHhhC-CCCeEEcCCcCC
Confidence 1 1111122345677788889999999998877655544432 234444 7774
No 447
>PLN02979 glycolate oxidase
Probab=80.98 E-value=21 Score=35.55 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=64.5
Q ss_pred CcCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCe
Q 022677 77 QRVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (293)
Q Consensus 77 ~~~t~~~Lr~l~~-~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~ 155 (293)
...|.++|..+.+ -+-|+++=.+-+.-.|+.+.++|+|.|.|+...+-. .|..+-|++-+.+..+++. -+.+
T Consensus 208 ~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq----ld~~p~t~~~L~ei~~~~~--~~~~- 280 (366)
T PLN02979 208 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ----LDYVPATISALEEVVKATQ--GRIP- 280 (366)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCC----CCCchhHHHHHHHHHHHhC--CCCe-
Confidence 4577788776654 356888889999999999999999999987665421 2444334443333333332 1234
Q ss_pred EEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 156 vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
|++| |+.. +-.+++ +.+ ..||++|-+-
T Consensus 281 Vi~d---GGIr-~G~Di~----KAL-ALGAdaV~iG 307 (366)
T PLN02979 281 VFLD---GGVR-RGTDVF----KAL-ALGASGIFIG 307 (366)
T ss_pred EEEe---CCcC-cHHHHH----HHH-HcCCCEEEEc
Confidence 8888 5553 445553 445 4799999884
No 448
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=80.88 E-value=12 Score=37.07 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=78.3
Q ss_pred HHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC----CCCC-----CcHHHHHHHH----HcCC
Q 022677 143 HCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE----GGSP-----SRITAARGIV----EAGI 209 (293)
Q Consensus 143 h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE----gg~~-----~~~~~ikal~----~~GI 209 (293)
=.|.+...-++| +++-+.--..+.|+++..+-+.++. .+|+|-||=. ++.. ++....+++. +-|=
T Consensus 117 G~R~~lgv~~RP-l~gtiiKP~~Glsp~~~a~~~y~~~-~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~ 194 (366)
T cd08148 117 GIRKLLGVYGRP-LVGTIIKPKLGLNPKYTAEAAYAAA-LGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGE 194 (366)
T ss_pred hHHHHhCCCCCc-eeEeecccccCCCHHHHHHHHHHHH-hCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCC
Confidence 357777777889 5555544456789999999999998 6999999842 2221 1111112121 1121
Q ss_pred cEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHH--hcCCCEEEeCCCC
Q 022677 210 AVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP--PPVAAAATS--ALQIPTIGIGAGP 284 (293)
Q Consensus 210 pV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp--~e~a~~It~--~l~iPtIGIGaG~ 284 (293)
+++ |. .--|. +.+++++|++..+++|+.++.+-... -...+.+.+ ..++|+.+==||.
T Consensus 195 ~~~---------------y~-~NiT~-~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~l~IhaHrA~~ 256 (366)
T cd08148 195 KKL---------------YA-VNVTA-GTFEIIERAERALELGANMLMVDVLTAGFSALQALAEDFEIDLPIHVHRAMH 256 (366)
T ss_pred cce---------------EE-EEccC-CHHHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHHhCcCCcEEEeccccc
Confidence 111 10 01122 23899999999999999999999877 366778877 5678888644443
No 449
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=80.84 E-value=26 Score=34.50 Aligned_cols=130 Identities=9% Similarity=0.059 Sum_probs=69.1
Q ss_pred CcCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEE-EECch--hhhhhc-cC----CCCccCCHH----HHHHHH
Q 022677 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVGDS--AAMVVH-GH----DTTLPITLE----EMLVHC 144 (293)
Q Consensus 77 ~~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dai-lvGdS--la~~~l-G~----~dt~~vtl~----eml~h~ 144 (293)
+.+|..++.++.+.= .-.|+.+.+||||.| +-+.. |-.-.| -+ .|--.=+++ -.++.+
T Consensus 132 ~~mt~~eI~~ii~~f----------~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii 201 (361)
T cd04747 132 REMTEADIDDVIAAF----------ARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVV 201 (361)
T ss_pred ccCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 568888888876521 137889999999999 43211 111111 00 110011333 335666
Q ss_pred HHHHcccCCCe-EEeeC------CCC-CCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC---C----cHHHHHHHHH-cC
Q 022677 145 RAVARGAKRPL-LVGDL------PFG-TYESSTNQAVDTAVRILKEGGMDAIKLEGGSP---S----RITAARGIVE-AG 208 (293)
Q Consensus 145 raV~Ra~~~p~-vvaDm------pfG-sy~~s~e~av~~A~rl~keaGa~gVkiEgg~~---~----~~~~ikal~~-~G 208 (293)
++|+..++..| |..=+ +++ ..+.+.++.++.+..+ ++.|+|.|++-.+.. . -.+..+.+.+ .+
T Consensus 202 ~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l-~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~ 280 (361)
T cd04747 202 KAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPL-VDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTG 280 (361)
T ss_pred HHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHH-HHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcC
Confidence 77777665333 22222 221 1135788888776555 478999999866521 0 1122233332 36
Q ss_pred CcEEEeccc
Q 022677 209 IAVMGHVGL 217 (293)
Q Consensus 209 IpV~GHiGL 217 (293)
+||++.=++
T Consensus 281 ~pv~~~G~i 289 (361)
T cd04747 281 LPTITVGSV 289 (361)
T ss_pred CCEEEECCc
Confidence 888865333
No 450
>PRK13753 dihydropteroate synthase; Provisional
Probab=80.50 E-value=28 Score=33.39 Aligned_cols=90 Identities=12% Similarity=0.134 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCC-----C---------CcHHHHHHHHHcCCcEEEeccccceeeeecCCccccc
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGS-----P---------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~-----~---------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqG 232 (293)
.+++.+++.|.+++ +.||+.|=|=+.. . +..|++++|.+.++|+ +..+.
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~I---------SIDT~------- 84 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRV---------SIDSF------- 84 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCcE---------EEECC-------
Confidence 68899999999998 5899999996542 1 2337788888765543 22211
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEE-ecCCC-HHHHHHHHHhcCCCEEEeCC
Q 022677 233 KNVTSAVKVVETALALQEVGCFSVV-LECVP-PPVAAAATSALQIPTIGIGA 282 (293)
Q Consensus 233 rt~~~a~e~l~rA~a~eeAGA~~Iv-lE~vp-~e~a~~It~~l~iPtIGIGa 282 (293)
.. +++ ++-.++||++|- +.+.. +++. .+..+.++|++-+-.
T Consensus 85 -~~----~va---~~al~aGadiINDVsg~~d~~~~-~vva~~~~~vVlmH~ 127 (279)
T PRK13753 85 -QP----ETQ---RYALKRGVGYLNDIQGFPDPALY-PDIAEADCRLVVMHS 127 (279)
T ss_pred -CH----HHH---HHHHHcCCCEEEeCCCCCchHHH-HHHHHcCCCEEEEec
Confidence 11 222 233478999876 44554 4554 455567899988775
No 451
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=80.49 E-value=3.8 Score=38.90 Aligned_cols=47 Identities=32% Similarity=0.362 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHH-cCCcEEEecCCC--HHHHHHHHHhcCCCEEE-eCCCC
Q 022677 237 SAVKVVETALALQE-VGCFSVVLECVP--PPVAAAATSALQIPTIG-IGAGP 284 (293)
Q Consensus 237 ~a~e~l~rA~a~ee-AGA~~IvlE~vp--~e~a~~It~~l~iPtIG-IGaG~ 284 (293)
..+++++-|..+.+ +|||+|-+|+-. .++++.|++ -+||++| ||=-|
T Consensus 92 s~e~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~-~GIPV~gHiGLtP 142 (261)
T PF02548_consen 92 SPEQAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVD-AGIPVMGHIGLTP 142 (261)
T ss_dssp SHHHHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHH-TT--EEEEEES-G
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHH-CCCcEEEEecCch
Confidence 34677888887766 999999999876 588899987 5899997 55433
No 452
>TIGR03586 PseI pseudaminic acid synthase.
Probab=80.43 E-value=14 Score=36.06 Aligned_cols=112 Identities=17% Similarity=0.244 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEe
Q 022677 135 ITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGH 214 (293)
Q Consensus 135 vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GH 214 (293)
+++++. ......|+..+.+|++ .|| +.+.+ .++.+-|++.+||--+.-.-.++++++.+.|.||.-=
T Consensus 74 l~~e~~-~~L~~~~~~~Gi~~~s--tpf-----d~~sv-----d~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvils 140 (327)
T TIGR03586 74 TPWEWH-KELFERAKELGLTIFS--SPF-----DETAV-----DFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMS 140 (327)
T ss_pred CCHHHH-HHHHHHHHHhCCcEEE--ccC-----CHHHH-----HHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEE
Confidence 444432 2344556777777655 344 22322 5666789999999765434578999999999999732
Q ss_pred ccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCC-cEEEecCCCH----------HHHHHHHHhcCCCE
Q 022677 215 VGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGC-FSVVLECVPP----------PVAAAATSALQIPT 277 (293)
Q Consensus 215 iGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA-~~IvlE~vp~----------e~a~~It~~l~iPt 277 (293)
. |.. ..+|+.+-+..++++|+ +.++++|+.. ..+..+.+..++|+
T Consensus 141 t----------------G~~--t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pV 196 (327)
T TIGR03586 141 T----------------GIA--TLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPV 196 (327)
T ss_pred C----------------CCC--CHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCE
Confidence 2 221 34455555566678999 7888888731 45677778888886
No 453
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=80.34 E-value=23 Score=34.79 Aligned_cols=134 Identities=15% Similarity=0.164 Sum_probs=84.3
Q ss_pred hccCCCCccCCHHHHHHHHHHHHc-ccCCCeEEee-----CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHH
Q 022677 126 VHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLVGD-----LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRIT 199 (293)
Q Consensus 126 ~lG~~dt~~vtl~eml~h~raV~R-a~~~p~vvaD-----mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~ 199 (293)
.-.+|.....+.++++.+++.... |.+ .++..- -+.|+...+++..+..|+|.+|+.--+.+-|-|-. ..+
T Consensus 47 I~smPg~~r~s~d~l~~~v~~~~~~Gi~-av~LFgv~~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVc--Lc~ 123 (323)
T PRK09283 47 IPSMPGVYRLSIDLLVKEAEEAVELGIP-AVALFGVPELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVC--LDE 123 (323)
T ss_pred cCCCCCceeeCHHHHHHHHHHHHHCCCC-EEEEeCcCCCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeee--ccC
Confidence 345777788888888888877655 343 223322 24466656666777788888886655555555422 011
Q ss_pred HHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhc------
Q 022677 200 AARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSAL------ 273 (293)
Q Consensus 200 ~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l------ 273 (293)
----||.|+.-. |. + -+++..+.+.+.|..+.+||||+|=.-.+=+--+..|.+.|
T Consensus 124 ---------YT~hGHcGil~~------g~-i--dND~Tl~~L~~~Al~~A~AGaDiVAPSdMMDGrV~aIR~aLd~~g~~ 185 (323)
T PRK09283 124 ---------YTSHGHCGILED------GY-V--DNDETLELLAKQALSQAEAGADIVAPSDMMDGRVGAIREALDEAGFT 185 (323)
T ss_pred ---------CCCCCceecccC------Cc-C--cCHHHHHHHHHHHHHHHHhCCCEEEcccccccHHHHHHHHHHHCCCC
Confidence 013477776532 21 1 25677788999999999999999877655444446666655
Q ss_pred CCCEEEe
Q 022677 274 QIPTIGI 280 (293)
Q Consensus 274 ~iPtIGI 280 (293)
++|+++.
T Consensus 186 ~v~ImSY 192 (323)
T PRK09283 186 DVPIMSY 192 (323)
T ss_pred CCceeec
Confidence 4677765
No 454
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=80.29 E-value=53 Score=30.98 Aligned_cols=154 Identities=21% Similarity=0.281 Sum_probs=91.8
Q ss_pred HHHHHHHcCCcEE-EECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 104 SAriae~AG~Dai-lvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ke 182 (293)
.|+--++.|+..+ +| |-=++-. |.+.. ....+.|++.++.|+=++ |+- .|.+.+ .+++ +
T Consensus 36 ~a~~~~~~Ga~~lHlV-DLdgA~~-g~~~n--------~~~i~~i~~~~~~~vQvG----GGI-Rs~~~v----~~ll-~ 95 (241)
T COG0106 36 VAKKWSDQGAEWLHLV-DLDGAKA-GGPRN--------LEAIKEILEATDVPVQVG----GGI-RSLEDV----EALL-D 95 (241)
T ss_pred HHHHHHHcCCcEEEEe-ecccccc-CCccc--------HHHHHHHHHhCCCCEEee----CCc-CCHHHH----HHHH-H
Confidence 4555566788888 55 5444432 33333 456678888888773332 455 355544 4677 6
Q ss_pred hCCCEEEeCCCCCCcHHHHHHHHH-cCCcEEEeccccceeeeecCCc-ccccCCHHHHHHHHHHHHHHHHcCCcEEEecC
Q 022677 183 GGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGF-RPQGKNVTSAVKVVETALALQEVGCFSVVLEC 260 (293)
Q Consensus 183 aGa~gVkiEgg~~~~~~~ikal~~-~GIpV~GHiGLtPq~~~~lgGf-~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~ 260 (293)
.|++-|.+=--.-.-++.++.+++ -|-.++ ++|-. -+|+ .+-|=.+....++.+-++.|++.|+..+..--
T Consensus 96 ~G~~rViiGt~av~~p~~v~~~~~~~g~riv--v~lD~-----r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~Td 168 (241)
T COG0106 96 AGVARVIIGTAAVKNPDLVKELCEEYGDRIV--VALDA-----RDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTD 168 (241)
T ss_pred CCCCEEEEecceecCHHHHHHHHHHcCCcEE--EEEEc-----cCCccccccccccccCCHHHHHHHHHhcCCCeEEEEe
Confidence 899988773221123555665554 232222 11111 1222 22232333445788899999999999998543
Q ss_pred ---------CCHHHHHHHHHhcCCCEEEeCCCC
Q 022677 261 ---------VPPPVAAAATSALQIPTIGIGAGP 284 (293)
Q Consensus 261 ---------vp~e~a~~It~~l~iPtIGIGaG~ 284 (293)
+-.++.+.+++.+++|+|.=|.-.
T Consensus 169 I~~DGtl~G~n~~l~~~l~~~~~ipviaSGGv~ 201 (241)
T COG0106 169 ISRDGTLSGPNVDLVKELAEAVDIPVIASGGVS 201 (241)
T ss_pred cccccccCCCCHHHHHHHHHHhCcCEEEecCcC
Confidence 335889999999999999766544
No 455
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=80.12 E-value=21 Score=40.71 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHcccCCCeEE---eeCCC--CCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC-CCcHHHHHHHHHc--
Q 022677 136 TLEEMLVHCRAVARGAKRPLLV---GDLPF--GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEA-- 207 (293)
Q Consensus 136 tl~eml~h~raV~Ra~~~p~vv---aDmpf--Gsy~~s~e~av~~A~rl~keaGa~gVkiEgg~-~~~~~~ikal~~~-- 207 (293)
..++|..+.+.+.+.++.|+.+ +.+|. +.|..++++-.+.+.++++ .|. ++|=||+ ...++-|++|.+.
T Consensus 253 GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~-~G~--v~IIGGCCGTtPeHI~ala~~l~ 329 (1229)
T PRK09490 253 GADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAE-SGF--LNIVGGCCGTTPEHIAAIAEAVA 329 (1229)
T ss_pred cHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHH-cCC--CCEEEecCCCCHHHHHHHHHHHh
Confidence 4688999999998888888655 44442 5788899999888888885 441 4455763 3345556666541
Q ss_pred CC-cEE--E---e---ccccceeeeecCCccccc-CCHH-------------HHHHHHHHHHHHHHcCCcEEEec
Q 022677 208 GI-AVM--G---H---VGLTPQAISVLGGFRPQG-KNVT-------------SAVKVVETALALQEVGCFSVVLE 259 (293)
Q Consensus 208 GI-pV~--G---H---iGLtPq~~~~lgGf~vqG-rt~~-------------~a~e~l~rA~a~eeAGA~~IvlE 259 (293)
+. |.. . + -|+.|........|.++| |+.. +.++++++|+...++||+.|=+=
T Consensus 330 ~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~qve~GA~iIDVn 404 (1229)
T PRK09490 330 GLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTNVTGSAKFARLIKEEDYDEALDVARQQVENGAQIIDIN 404 (1229)
T ss_pred cCCCCCCCCcCcceeeecceEEeecCCCcccccccccchhccHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 11 110 0 0 011111111123577777 4321 13689999999999999999763
No 456
>PRK07360 FO synthase subunit 2; Reviewed
Probab=80.08 E-value=20 Score=35.11 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=71.8
Q ss_pred HHHHHHHcCCcEEE-ECchhhhhhcc-CCCCccCCHHHHHHHHHHHHcccCCCeEEe--eCCC----CCCCCCHHHHHHH
Q 022677 104 SAVHLDSAGIDICL-VGDSAAMVVHG-HDTTLPITLEEMLVHCRAVARGAKRPLLVG--DLPF----GTYESSTNQAVDT 175 (293)
Q Consensus 104 SAriae~AG~Dail-vGdSla~~~lG-~~dt~~vtl~eml~h~raV~Ra~~~p~vva--Dmpf----Gsy~~s~e~av~~ 175 (293)
.|+.+.+.|+.-+. +| | .|+. -.++.+...++.|++..+..-+.+ .++. -+.+.+.++.
T Consensus 99 ~a~~a~~~G~~~i~l~~--------G~~p~~--~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~--- 165 (371)
T PRK07360 99 KAAEAVKRGATEVCIQG--------GLHPAA--DSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEV--- 165 (371)
T ss_pred HHHHHHhCCCCEEEEcc--------CCCCCC--CcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHH---
Confidence 35567788987774 54 3 2322 147888888888876433211211 0000 0112344554
Q ss_pred HHHHHHHhCCCEEEeCCCCC------------------CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHH
Q 022677 176 AVRILKEGGMDAIKLEGGSP------------------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (293)
Q Consensus 176 A~rl~keaGa~gVkiEgg~~------------------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~ 237 (293)
.+.++++|++.+. |.+.+ .....++.+.+.|+++|.= +..-.|-|.++
T Consensus 166 -l~~LkeAGld~~~-~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg------------~i~G~gEt~ed 231 (371)
T PRK07360 166 -LKALKDAGLDSMP-GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTST------------MMYGHVETPEH 231 (371)
T ss_pred -HHHHHHcCCCcCC-CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceee------------EEeeCCCCHHH
Confidence 3456789999995 54421 1235677778999999832 22214666665
Q ss_pred HHHHHHHHHHHH-HcCCcEEEec
Q 022677 238 AVKVVETALALQ-EVGCFSVVLE 259 (293)
Q Consensus 238 a~e~l~rA~a~e-eAGA~~IvlE 259 (293)
..+.+...+.++ +.|-|..|++
T Consensus 232 rv~~l~~lr~l~~~~~g~~~fIp 254 (371)
T PRK07360 232 RIDHLLILREIQQETGGITEFVP 254 (371)
T ss_pred HHHHHHHHHHhchhhCCeeEEEe
Confidence 555555555554 3556666665
No 457
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=80.07 E-value=22 Score=35.26 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=51.9
Q ss_pred CcEE-EEecC-C-HHHHHHHHHcCCcEEEECchhhhh---hccCCCCccCCHHHHHHHHHHHHccc----CCCeEEeeCC
Q 022677 92 EPIT-MVTAY-D-YPSAVHLDSAGIDICLVGDSAAMV---VHGHDTTLPITLEEMLVHCRAVARGA----KRPLLVGDLP 161 (293)
Q Consensus 92 ~pi~-m~tay-D-~~SAriae~AG~DailvGdSla~~---~lG~~dt~~vtl~eml~h~raV~Ra~----~~p~vvaDmp 161 (293)
.|+. -...+ + .-.|++++..|+|+|.+...-+-. -+-+.+...++..+.+..+....+.. +.| |++|
T Consensus 215 ~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~-vias-- 291 (392)
T cd02808 215 KPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVS-LIAS-- 291 (392)
T ss_pred ceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCe-EEEE--
Confidence 5664 34444 3 346677777779999764443222 11111222355555555444443322 345 7787
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 162 fGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
|+. .+..+++ +.+ ..||++|.+=.
T Consensus 292 -GGI-~~g~Dv~----kal-aLGAd~V~ig~ 315 (392)
T cd02808 292 -GGL-RTGADVA----KAL-ALGADAVGIGT 315 (392)
T ss_pred -CCC-CCHHHHH----HHH-HcCCCeeeech
Confidence 677 5777774 456 47999999853
No 458
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=79.82 E-value=24 Score=35.10 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=65.0
Q ss_pred CcCCHHHHHHhhh-CCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCe
Q 022677 77 QRVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (293)
Q Consensus 77 ~~~t~~~Lr~l~~-~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~ 155 (293)
...|-++|..+.+ .+-||++=.+-+.-.|+.+.++|+|.|.|+...+- ..|...-|++-+.+..+++. -+.|
T Consensus 209 ~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGr----qld~~~~t~~~L~ei~~av~--~~~~- 281 (367)
T PLN02493 209 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGAR----QLDYVPATISALEEVVKATQ--GRIP- 281 (367)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCC----CCCCchhHHHHHHHHHHHhC--CCCe-
Confidence 3567777776653 35789988999999999999999999998765542 23444434443333333332 2245
Q ss_pred EEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 156 vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
|++| |+.. +-.+++ +.+ ..||++|-+-
T Consensus 282 vi~d---GGIr-~G~Dv~----KAL-ALGA~aV~iG 308 (367)
T PLN02493 282 VFLD---GGVR-RGTDVF----KAL-ALGASGIFIG 308 (367)
T ss_pred EEEe---CCcC-cHHHHH----HHH-HcCCCEEEEc
Confidence 8888 5563 445553 445 4799999884
No 459
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=79.77 E-value=14 Score=34.52 Aligned_cols=121 Identities=24% Similarity=0.241 Sum_probs=72.3
Q ss_pred HHHHHHHHcccCCCeEE---eeCCC-------CCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC----------------
Q 022677 141 LVHCRAVARGAKRPLLV---GDLPF-------GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------------- 194 (293)
Q Consensus 141 l~h~raV~Ra~~~p~vv---aDmpf-------Gsy~~s~e~av~~A~rl~keaGa~gVkiEgg~---------------- 194 (293)
.+.++.=+.+...+.++ .|.|- |.+ .++.+.+-.+.+-++++||+.+-|-...
T Consensus 23 ne~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w-~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPl 101 (230)
T COG1794 23 NEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEW-DEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPL 101 (230)
T ss_pred HHHHHHHhCCcCcchhheecCCcccHHHHHccCcc-ccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCe
Confidence 34444444444444322 66652 455 4677777777777889999999997752
Q ss_pred -CCcHHHHHHHHHcCCcEEEeccccceeeee-------cCCccc--------------------ccCC-HHHHHHHHHHH
Q 022677 195 -PSRITAARGIVEAGIAVMGHVGLTPQAISV-------LGGFRP--------------------QGKN-VTSAVKVVETA 245 (293)
Q Consensus 195 -~~~~~~ikal~~~GIpV~GHiGLtPq~~~~-------lgGf~v--------------------qGrt-~~~a~e~l~rA 245 (293)
..+....+++...|.++.|=+|=.+.-.+- --|+-+ +|.- ++.-+..++-+
T Consensus 102 lhIidaTa~~ik~~g~kkvgLLgT~~Tm~~~fY~~~l~~~gievvvPdd~~q~~v~~iIy~El~~G~~~~~sr~~~~~ii 181 (230)
T COG1794 102 LHIIDATAKAIKAAGAKKVGLLGTRFTMEQGFYRKRLEEKGIEVVVPDDDEQAEVNRIIYEELCQGIVKDASRELYLAVI 181 (230)
T ss_pred ehHHHHHHHHHHhcCCceeEEeeccchHHhHHHHHHHHHCCceEecCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 124466778888899999877621111100 011111 2321 12223455567
Q ss_pred HHHHHcCCcEEEecCCC
Q 022677 246 LALQEVGCFSVVLECVP 262 (293)
Q Consensus 246 ~a~eeAGA~~IvlE~vp 262 (293)
+.+++-||++|.+=|..
T Consensus 182 ~~l~~~Gae~vIlGCTE 198 (230)
T COG1794 182 ERLAERGAEGVILGCTE 198 (230)
T ss_pred HHHHHcCCCEEEEeccc
Confidence 88889999999999875
No 460
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=79.75 E-value=41 Score=31.83 Aligned_cols=102 Identities=17% Similarity=0.086 Sum_probs=59.2
Q ss_pred HHHHHHHcCCcEEEECchh----hhhhccCCCCccCCHHHHHHHHHHHHccc---CC--CeEEeeCCCC-CCCCCHHHHH
Q 022677 104 SAVHLDSAGIDICLVGDSA----AMVVHGHDTTLPITLEEMLVHCRAVARGA---KR--PLLVGDLPFG-TYESSTNQAV 173 (293)
Q Consensus 104 SAriae~AG~DailvGdSl----a~~~lG~~dt~~vtl~eml~h~raV~Ra~---~~--p~vvaDmpfG-sy~~s~e~av 173 (293)
....+-++|++.|-+.-+. .-..++ -|.+|.+...+.+.+-+ +. .+-..| |+ .|..+++..+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~------~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d--~~~~~r~~~~~~~ 150 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLR------KTPEEHFADIREVIEYAIKNGIEVNIYLED--WSNGMRDSPDYVF 150 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHC------cCHHHHHHHHHHHHHHHHhCCCEEEEEEEe--CCCCCcCCHHHHH
Confidence 4555667899988432222 222233 45677765555444322 22 222255 43 4567888888
Q ss_pred HHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHHc--CCcEEEe
Q 022677 174 DTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA--GIAVMGH 214 (293)
Q Consensus 174 ~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~~--GIpV~GH 214 (293)
+.+.++. +.|++.|.|-|-.. ....+++.+.+. ++|+--|
T Consensus 151 ~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H 197 (280)
T cd07945 151 QLVDFLS-DLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFH 197 (280)
T ss_pred HHHHHHH-HcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEE
Confidence 8877766 78999999999532 233455666553 3565555
No 461
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=79.68 E-value=19 Score=35.28 Aligned_cols=94 Identities=23% Similarity=0.245 Sum_probs=61.0
Q ss_pred CCHHHHHHhhhCCCcEE-EEecCCHHHHHHHHHcCCcEEEE-CchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeE
Q 022677 79 VTLTHLRQKHKNGEPIT-MVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (293)
Q Consensus 79 ~t~~~Lr~l~~~g~pi~-m~tayD~~SAriae~AG~Dailv-GdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~v 156 (293)
-|++.-+.+.++| ..+ ..++=|...|+.++++|+-++.- |.-.| +-.| ++= -+..+.+++..+.| |
T Consensus 185 ~~v~aa~~L~~~G-f~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIG-sg~g------v~~---p~~i~~~~e~~~vp-V 252 (326)
T PRK11840 185 ETLKATEILVKEG-FQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIG-SGLG------IQN---PYTIRLIVEGATVP-V 252 (326)
T ss_pred HHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHhcCCEEEeecccccc-CCCC------CCC---HHHHHHHHHcCCCc-E
Confidence 4555556666555 356 56788999999999999976654 43333 3333 332 23345555556677 8
Q ss_pred EeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 022677 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (293)
Q Consensus 157 vaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg 193 (293)
++|=+.| +++++ .+.| |.|+|||-+--+
T Consensus 253 ivdAGIg----~~sda----~~Am-elGadgVL~nSa 280 (326)
T PRK11840 253 LVDAGVG----TASDA----AVAM-ELGCDGVLMNTA 280 (326)
T ss_pred EEeCCCC----CHHHH----HHHH-HcCCCEEEEcce
Confidence 8886654 56777 3457 699999988654
No 462
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=79.64 E-value=51 Score=30.42 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=62.3
Q ss_pred CCCcEEEEe---cCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCC
Q 022677 90 NGEPITMVT---AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYE 166 (293)
Q Consensus 90 ~g~pi~m~t---ayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~ 166 (293)
++.++.++. ..+.-.-..+.++|+|.+-+.++..-. +.+...++.+++ .+.. +.+.+.. .+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~------------~~~~~~i~~ak~-~G~~-v~~~~~~-~~~ 137 (263)
T cd07943 73 KQAKLGVLLLPGIGTVDDLKMAADLGVDVVRVATHCTEA------------DVSEQHIGAARK-LGMD-VVGFLMM-SHM 137 (263)
T ss_pred cCCEEEEEecCCccCHHHHHHHHHcCCCEEEEEechhhH------------HHHHHHHHHHHH-CCCe-EEEEEEe-ccC
Confidence 356776663 233444556677899999776555421 234444444433 2222 3333332 244
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHHc-CC-cEEEe
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GI-AVMGH 214 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~~-GI-pV~GH 214 (293)
.+++..++.+.++. +.|++.|.|-|-.. ....+++.+.+. +. |+--|
T Consensus 138 ~~~~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H 191 (263)
T cd07943 138 ASPEELAEQAKLME-SYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFH 191 (263)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEE
Confidence 68888888776655 79999999998532 123444555432 33 66655
No 463
>PRK12999 pyruvate carboxylase; Reviewed
Probab=79.58 E-value=58 Score=37.01 Aligned_cols=119 Identities=21% Similarity=0.233 Sum_probs=72.1
Q ss_pred CHHHHHHhhhCCCcEEEEec------C----CHH---HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHH
Q 022677 80 TLTHLRQKHKNGEPITMVTA------Y----DYP---SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRA 146 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~ta------y----D~~---SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~ra 146 (293)
.++.||+.. .+.+|.|+.= | |-. .-+.+-++|+|++-+.|++.- ++.|...++.
T Consensus 596 rl~~~r~~~-~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd------------~~~~~~~i~~ 662 (1146)
T PRK12999 596 RLAELREAA-PNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNW------------VENMRVAIDA 662 (1146)
T ss_pred HHHHHHHhC-CCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCCh------------HHHHHHHHHH
Confidence 345566554 4567776643 2 112 234566789999999886522 4567777777
Q ss_pred HHcccCCC-e--E--EeeCC--CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHHc-CCcEEE
Q 022677 147 VARGAKRP-L--L--VGDLP--FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMG 213 (293)
Q Consensus 147 V~Ra~~~p-~--v--vaDmp--fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~~-GIpV~G 213 (293)
++.. +.- . + .+|+. +... -+++..++.+.++. +.|++.|.|-|-.. .+..++++|.++ ++|+--
T Consensus 663 vk~~-g~~~~~~i~ytg~~~d~~~~~-~~~~~~~~~a~~l~-~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~ 739 (1146)
T PRK12999 663 VRET-GKIAEAAICYTGDILDPARAK-YDLDYYVDLAKELE-KAGAHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHL 739 (1146)
T ss_pred HHHc-CCeEEEEEEEEecCCCCCCCC-CCHHHHHHHHHHHH-HcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 7664 321 1 1 13433 2111 37788888877766 79999999999532 234566667653 677766
Q ss_pred e
Q 022677 214 H 214 (293)
Q Consensus 214 H 214 (293)
|
T Consensus 740 H 740 (1146)
T PRK12999 740 H 740 (1146)
T ss_pred E
Confidence 6
No 464
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=79.51 E-value=12 Score=36.63 Aligned_cols=135 Identities=16% Similarity=0.202 Sum_probs=84.7
Q ss_pred hccCCCCccCCHHHHHHHHHHHHc-ccCCCeEEeeCC-------C-CCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCC
Q 022677 126 VHGHDTTLPITLEEMLVHCRAVAR-GAKRPLLVGDLP-------F-GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS 196 (293)
Q Consensus 126 ~lG~~dt~~vtl~eml~h~raV~R-a~~~p~vvaDmp-------f-Gsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~ 196 (293)
.-.+|.....+++.++..++...+ |.+ .++..-.| . |+-..+++-.+..|+|.+|+.=-+.+-|-|-.-
T Consensus 39 I~smPG~~r~s~d~l~~~~~~~~~~Gi~-~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvcl- 116 (320)
T cd04824 39 IDSLPGINRYGVNRLEEFLRPLVAKGLR-SVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACDVCL- 116 (320)
T ss_pred cCCCCCceeeCHHHHHHHHHHHHHCCCC-EEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEEEEeeec-
Confidence 445788888889998888887665 443 33333223 3 555556777788888888865345555555320
Q ss_pred cHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhc---
Q 022677 197 RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSAL--- 273 (293)
Q Consensus 197 ~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l--- 273 (293)
.+ ----||.|+.-. +|. + -+++..+.+.+.|..+.+||||+|=.-.+=+--...|.+.|
T Consensus 117 -c~---------YT~hGHcGil~~-----~g~-v--dND~Tl~~L~k~Avs~A~AGADiVAPSdMMDGrV~aIR~aLD~~ 178 (320)
T cd04824 117 -CE---------YTSHGHCGILYE-----DGT-I--NNEASVKRLAEVALAYAKAGAHIVAPSDMMDGRVRAIKQALIQA 178 (320)
T ss_pred -cC---------CCCCCcceeECC-----CCc-C--cCHHHHHHHHHHHHHHHHhCCCEEecccccccHHHHHHHHHHHC
Confidence 11 013578886531 121 1 25667788999999999999999876655443345665554
Q ss_pred ----CCCEEEe
Q 022677 274 ----QIPTIGI 280 (293)
Q Consensus 274 ----~iPtIGI 280 (293)
++|+++.
T Consensus 179 G~~~~v~ImSY 189 (320)
T cd04824 179 GLGNKVSVMSY 189 (320)
T ss_pred CCccCCeeeeh
Confidence 4666654
No 465
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=79.32 E-value=35 Score=32.72 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=58.6
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEE--CchhhhhhccCCCCccCCHHHHHHHHHHHHccc----C
Q 022677 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA----K 152 (293)
Q Consensus 79 ~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~Dailv--GdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~----~ 152 (293)
.-+.-|+..|+. ..++++-++|.-.|+..-+||.|+|.. |=..+ -..|..+ ..|++|-...++.|.+++ +
T Consensus 138 ~EVemi~~A~~~-gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~g-G~~Ga~~--~~sl~~a~~~~~~i~~aa~~v~~ 213 (268)
T PF09370_consen 138 REVEMIRKAHEK-GLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTG-GSIGAKT--ALSLEEAAERIQEIFDAARAVNP 213 (268)
T ss_dssp HHHHHHHHHHHT-T-EE--EE-SHHHHHHHHHHT-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHHHHC-CCeeeeeecCHHHHHHHHHcCCCEEEecCCccCC-CCcCccc--cCCHHHHHHHHHHHHHHHHHhCC
Confidence 445667777665 469999999999999999999999974 32111 1345553 469999999888887753 3
Q ss_pred CCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhC-CCEEE
Q 022677 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGG-MDAIK 189 (293)
Q Consensus 153 ~p~vvaDmpfGsy~~s~e~av~~A~rl~keaG-a~gVk 189 (293)
..++.+. |+-=.+|+++ ..+++... ++|..
T Consensus 214 dii~l~h---GGPI~~p~D~----~~~l~~t~~~~Gf~ 244 (268)
T PF09370_consen 214 DIIVLCH---GGPIATPEDA----QYVLRNTKGIHGFI 244 (268)
T ss_dssp T-EEEEE---CTTB-SHHHH----HHHHHH-TTEEEEE
T ss_pred CeEEEEe---CCCCCCHHHH----HHHHhcCCCCCEEe
Confidence 4444455 5565788888 45666554 78864
No 466
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=79.31 E-value=59 Score=30.94 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=84.6
Q ss_pred HHHHHHHHcCCcEE-EECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 022677 103 PSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 103 ~SAriae~AG~Dai-lvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~k 181 (293)
-.|+.-++.|++.| +| |--+ |-+.. ....+.|++ ++.|+=++ |+.. + |++ .+++
T Consensus 47 ~~A~~~~~~Ga~~lHvV-DLdg----g~~~n--------~~~i~~i~~-~~~~vqvG----GGIR-~-e~i----~~~l- 101 (262)
T PLN02446 47 EFAEMYKRDGLTGGHVI-MLGA----DDASL--------AAALEALRA-YPGGLQVG----GGVN-S-ENA----MSYL- 101 (262)
T ss_pred HHHHHHHHCCCCEEEEE-ECCC----CCccc--------HHHHHHHHh-CCCCEEEe----CCcc-H-HHH----HHHH-
Confidence 35777788999998 55 4322 22222 344566777 66563222 5562 2 433 6788
Q ss_pred HhCCCEEEeCCCCC-----CcHHHHHHHHHcCCcEEEeccccceeeee--cCCccc--ccCCHHHHHHHHHHHHHHHHcC
Q 022677 182 EGGMDAIKLEGGSP-----SRITAARGIVEAGIAVMGHVGLTPQAISV--LGGFRP--QGKNVTSAVKVVETALALQEVG 252 (293)
Q Consensus 182 eaGa~gVkiEgg~~-----~~~~~ikal~~~GIpV~GHiGLtPq~~~~--lgGf~v--qGrt~~~a~e~l~rA~a~eeAG 252 (293)
+.||+=|-| |... .-++.++.+.+ .+|.=-++.--+.. .|.|+| .|-....-..+++-+..+++.|
T Consensus 102 ~~Ga~rVii-gT~Av~~~~~~p~~v~~~~~----~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g 176 (262)
T PLN02446 102 DAGASHVIV-TSYVFRDGQIDLERLKDLVR----LVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAY 176 (262)
T ss_pred HcCCCEEEE-chHHHhCCCCCHHHHHHHHH----HhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhC
Confidence 699999988 3211 11556666665 22210011111111 233433 3322222345666778888999
Q ss_pred CcEEEecC---------CCHHHHHHHHHhcCCCEEEeC
Q 022677 253 CFSVVLEC---------VPPPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 253 A~~IvlE~---------vp~e~a~~It~~l~iPtIGIG 281 (293)
|.-+++-. +.-++.+.+++.+++|+|.=|
T Consensus 177 ~~eii~TdI~rDGtl~G~d~el~~~l~~~~~ipVIASG 214 (262)
T PLN02446 177 CDEFLVHGVDVEGKRLGIDEELVALLGEHSPIPVTYAG 214 (262)
T ss_pred CCEEEEEEEcCCCcccCCCHHHHHHHHhhCCCCEEEEC
Confidence 98888543 335899999999999999544
No 467
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=79.26 E-value=47 Score=30.84 Aligned_cols=153 Identities=20% Similarity=0.185 Sum_probs=85.1
Q ss_pred HHHcCCcEE-E-ECchhhhhhccCCCCccCCHHHHHHHHHHHHccc-CCCeEE-eeCC--CCCCCCCHHHHHHHHHHHHH
Q 022677 108 LDSAGIDIC-L-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLV-GDLP--FGTYESSTNQAVDTAVRILK 181 (293)
Q Consensus 108 ae~AG~Dai-l-vGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~-~~p~vv-aDmp--fGsy~~s~e~av~~A~rl~k 181 (293)
+...|+|++ + + |.+.. ++ ..+......+.+++.. +.|++. .-.+ =|.|..+.++-++--.+++
T Consensus 37 ~~~~~aD~vElRl-D~l~~----~~-----~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~- 105 (253)
T PRK02412 37 ISKYDADIIEWRA-DFLEK----IS-----DVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEEYLALIKAVI- 105 (253)
T ss_pred HhhcCCCEEEEEe-chhhc----cC-----CHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHHHHHH-
Confidence 344689998 4 5 54421 11 2345556666666643 457554 2222 2456666665544433444
Q ss_pred HhC-CCEEEeCCCCC--CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 022677 182 EGG-MDAIKLEGGSP--SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258 (293)
Q Consensus 182 eaG-a~gVkiEgg~~--~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~Ivl 258 (293)
+.| ++.|=||-... ....+++.+.+.|+++.++.- . | .+|.. .+++.+..+..++.|||.+=+
T Consensus 106 ~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H-------~---f---~~tP~-~~~l~~~~~~~~~~gaDivKi 171 (253)
T PRK02412 106 KSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYH-------D---F---EKTPP-KEEIVERLRKMESLGADIVKI 171 (253)
T ss_pred hcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeC-------C---C---CCCcC-HHHHHHHHHHHHHhCCCEEEE
Confidence 567 89999995321 122334445567888886521 1 1 22221 124556666777889998877
Q ss_pred cCCC---HHHHHHH------HHh-cCCCEEEeCCCCC
Q 022677 259 ECVP---PPVAAAA------TSA-LQIPTIGIGAGPF 285 (293)
Q Consensus 259 E~vp---~e~a~~I------t~~-l~iPtIGIGaG~~ 285 (293)
=+.| .++.+.+ .++ .+.|+|.|+=|+.
T Consensus 172 a~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~ 208 (253)
T PRK02412 172 AVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKL 208 (253)
T ss_pred EecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 6665 2332222 122 5689999998885
No 468
>PRK06852 aldolase; Validated
Probab=79.12 E-value=13 Score=36.03 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEEECchhhhhhccCC-----CCccCCHHHHHHHHHHHHccc-CCCeEEeeCCCCCCCCCHHHHHHH
Q 022677 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHD-----TTLPITLEEMLVHCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDT 175 (293)
Q Consensus 102 ~~SAriae~AG~DailvGdSla~~~lG~~-----dt~~vtl~eml~h~raV~Ra~-~~p~vvaDmpfGsy~~s~e~av~~ 175 (293)
+.-||++.+.|+|+|=|- |+ +. .+..+.|.++. +.|+|++ |+-..+.++.++.
T Consensus 191 a~aaRiaaELGADIVKv~---------y~~~~~~g~--------~e~f~~vv~~~g~vpVvia----GG~k~~~~e~L~~ 249 (304)
T PRK06852 191 AGAAGVAACLGADFVKVN---------YPKKEGANP--------AELFKEAVLAAGRTKVVCA----GGSSTDPEEFLKQ 249 (304)
T ss_pred HHHHHHHHHHcCCEEEec---------CCCcCCCCC--------HHHHHHHHHhCCCCcEEEe----CCCCCCHHHHHHH
Q ss_pred HHHHHHHhCCCEEEe
Q 022677 176 AVRILKEGGMDAIKL 190 (293)
Q Consensus 176 A~rl~keaGa~gVki 190 (293)
+...++++|+.||-+
T Consensus 250 v~~ai~~aGa~Gv~~ 264 (304)
T PRK06852 250 LYEQIHISGASGNAT 264 (304)
T ss_pred HHHHHHHcCCceeee
No 469
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=79.08 E-value=40 Score=28.82 Aligned_cols=101 Identities=24% Similarity=0.201 Sum_probs=65.6
Q ss_pred CeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC--CCC--CcHHHHHHHHHcCCcEEEeccccceeeeecCCcc
Q 022677 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG--GSP--SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFR 229 (293)
Q Consensus 154 p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg--g~~--~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~ 229 (293)
-|=+.|++. . .++|+.++.| ++.+++.|-+.. +.. ....+++.|.++|+.-+- -..||-.
T Consensus 29 GfeVi~LG~--~-v~~e~~v~aa----~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~---------vivGG~~ 92 (134)
T TIGR01501 29 GFNVVNLGV--L-SPQEEFIKAA----IETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGIL---------LYVGGNL 92 (134)
T ss_pred CCEEEECCC--C-CCHHHHHHHH----HHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCE---------EEecCCc
Confidence 466888875 4 7899998765 345788887764 211 134667778888763210 1255655
Q ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHHhcCC
Q 022677 230 PQGKNVTSAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQI 275 (293)
Q Consensus 230 vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp-~e~a~~It~~l~i 275 (293)
+.+..+.+ + --..+.+.|.+.+|-+..| ++++..|.+.|++
T Consensus 93 vi~~~d~~--~---~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~~ 134 (134)
T TIGR01501 93 VVGKQDFP--D---VEKRFKEMGFDRVFAPGTPPEVVIADLKKDLNI 134 (134)
T ss_pred CcChhhhH--H---HHHHHHHcCCCEEECcCCCHHHHHHHHHHHhcC
Confidence 55443211 1 1235678999999999887 6899999988764
No 470
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=79.01 E-value=80 Score=32.26 Aligned_cols=138 Identities=13% Similarity=0.044 Sum_probs=78.7
Q ss_pred EEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCe-EEeeCCCCCCCCCHHHHH
Q 022677 95 TMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL-LVGDLPFGTYESSTNQAV 173 (293)
Q Consensus 95 ~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~-vvaDmpfGsy~~s~e~av 173 (293)
+++-+||---...+-++|.++|.+ .+.+.-||+-=+..+..+....+... +++ +- |. .+++++.
T Consensus 162 ~lvEvh~~~El~~al~~~a~iiGi-----------NnRdL~t~~vd~~~~~~l~~~ip~~~~~vs--eS-GI-~t~~d~~ 226 (454)
T PRK09427 162 VLTEVSNEEELERAIALGAKVIGI-----------NNRNLRDLSIDLNRTRELAPLIPADVIVIS--ES-GI-YTHAQVR 226 (454)
T ss_pred EEEEECCHHHHHHHHhCCCCEEEE-----------eCCCCccceECHHHHHHHHhhCCCCcEEEE--eC-CC-CCHHHHH
Confidence 556667766666666666666544 44455555544555666666555443 344 33 45 4778873
Q ss_pred HHHHHHHHHhCCCEEEeCCCC---CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHH
Q 022677 174 DTAVRILKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQE 250 (293)
Q Consensus 174 ~~A~rl~keaGa~gVkiEgg~---~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~ee 250 (293)
+ +++ |+++|-+=-.- +.....++.+...-|++||= ++ .+++++..+
T Consensus 227 ----~-~~~-~~davLiG~~lm~~~d~~~~~~~L~~~~vKICGi------------------t~-------~eda~~a~~ 275 (454)
T PRK09427 227 ----E-LSP-FANGFLIGSSLMAEDDLELAVRKLILGENKVCGL------------------TR-------PQDAKAAYD 275 (454)
T ss_pred ----H-HHh-cCCEEEECHHHcCCCCHHHHHHHHhccccccCCC------------------CC-------HHHHHHHHh
Confidence 3 344 69999773221 11234456676667888862 12 345666667
Q ss_pred cCCcEE---EecC----CCHHHHHHHHHhcCCCEE
Q 022677 251 VGCFSV---VLEC----VPPPVAAAATSALQIPTI 278 (293)
Q Consensus 251 AGA~~I---vlE~----vp~e~a~~It~~l~iPtI 278 (293)
+|||+| |.+. |+.+.++.|.+.+++.++
T Consensus 276 ~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~v~~V 310 (454)
T PRK09427 276 AGAVYGGLIFVEKSPRYVSLEQAQEIIAAAPLRYV 310 (454)
T ss_pred CCCCEEeeEeCCCCCCCCCHHHHHHHHHhCCCCEE
Confidence 777765 2232 335667777776654433
No 471
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=78.97 E-value=90 Score=32.82 Aligned_cols=158 Identities=22% Similarity=0.271 Sum_probs=92.7
Q ss_pred cCCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 78 ~~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
.+|..++++.|+. -+++..++|+|+++.- +.-+++|....++.+....+.|+++
T Consensus 117 ~~~~~~~~~~~~~-------------~~~~l~~~gvD~l~~E-------------T~~~~~Ea~a~~~a~~~~~~~p~~~ 170 (612)
T PRK08645 117 DISLEEIRREFRE-------------QIDALLEEGVDGLLLE-------------TFYDLEELLLALEAAREKTDLPIIA 170 (612)
T ss_pred CCCHHHHHHHHHH-------------HHHHHHhcCCCEEEEE-------------ccCCHHHHHHHHHHHHHhCCCcEEE
Confidence 3678888888863 4566778999999975 2346778887777776544467655
Q ss_pred -eeCCCC---CCCCCHHHHHHHHHHHHHHhCCCEEEeCC--CCCCcHHHHHHHHHc-CCcEEEeccccceeeeecCCcc-
Q 022677 158 -GDLPFG---TYESSTNQAVDTAVRILKEGGMDAIKLEG--GSPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFR- 229 (293)
Q Consensus 158 -aDmpfG---sy~~s~e~av~~A~rl~keaGa~gVkiEg--g~~~~~~~ikal~~~-GIpV~GHiGLtPq~~~~lgGf~- 229 (293)
....-+ .-+.+.+++++ .+.+.|+++|=+-- +.+...+.++.+... .+|+... |- .|+.
T Consensus 171 Sf~~~~~g~l~~G~~~~~~~~----~~~~~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vy----pN-----aG~~~ 237 (612)
T PRK08645 171 QVAFHEDGVTQNGTSLEEALK----ELVAAGADVVGLNCGLGPYHMLEALERIPIPENAPLSAY----PN-----AGLPE 237 (612)
T ss_pred EEEECCCCeeCCCCCHHHHHH----HHHhCCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEE----EC-----CCCCC
Confidence 333222 23445666654 44455666644443 333445556666442 3444422 21 1221
Q ss_pred -cccC--CHHHHHHHHHHHHHHHHcCCcEEEecC-CCHHHHHHHHHhcC
Q 022677 230 -PQGK--NVTSAVKVVETALALQEVGCFSVVLEC-VPPPVAAAATSALQ 274 (293)
Q Consensus 230 -vqGr--t~~~a~e~l~rA~a~eeAGA~~IvlE~-vp~e~a~~It~~l~ 274 (293)
..++ -+...++..+.++.+.++||..|===| +.++-+++|.+.++
T Consensus 238 ~~~~~~~~~~~p~~~~~~~~~~~~~Ga~iiGGCCgt~P~hI~~la~~l~ 286 (612)
T PRK08645 238 YVDGRYVYSANPEYFAEYALEFVEQGVRLIGGCCGTTPEHIRAMARALK 286 (612)
T ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCCEEeEecCCCHHHHHHHHHHhc
Confidence 0111 011345677788889999997765333 45777788888876
No 472
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=78.82 E-value=36 Score=29.53 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=51.4
Q ss_pred hhhCCCcEE--EEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCC
Q 022677 87 KHKNGEPIT--MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGT 164 (293)
Q Consensus 87 l~~~g~pi~--m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGs 164 (293)
.++.|-++. ++++.+...+..+...|+|.+.++=+......| . .......+.+++..+.| +.+| |+
T Consensus 99 ~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~----~----~~~~~~i~~~~~~~~~~-i~~~---GG 166 (202)
T cd04726 99 AKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAG----G----WWPEDDLKKVKKLLGVK-VAVA---GG 166 (202)
T ss_pred HHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccC----C----CCCHHHHHHHHhhcCCC-EEEE---CC
Confidence 334465555 489999999988888899998874111001111 1 12244555665544455 6777 44
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 165 YESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 165 y~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
- |++++ .+++ +.||+++-+-
T Consensus 167 I--~~~~i----~~~~-~~Gad~vvvG 186 (202)
T cd04726 167 I--TPDTL----PEFK-KAGADIVIVG 186 (202)
T ss_pred c--CHHHH----HHHH-hcCCCEEEEe
Confidence 4 55543 5566 6899998774
No 473
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=78.79 E-value=21 Score=35.09 Aligned_cols=119 Identities=26% Similarity=0.346 Sum_probs=81.0
Q ss_pred HHHHHHHcC-CcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHH
Q 022677 104 SAVHLDSAG-IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (293)
Q Consensus 104 SAriae~AG-~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~ke 182 (293)
.|+.+.+.| ...+++. -|+. ..=.++++...++.|....+.. +.+-++. .+.|++ .+ +++
T Consensus 92 ~Ak~ak~~Ga~r~c~~a-------agr~--~~~~~~~i~~~v~~Vk~~~~le-~c~slG~----l~~eq~----~~-L~~ 152 (335)
T COG0502 92 AAKKAKAAGATRFCMGA-------AGRG--PGRDMEEVVEAIKAVKEELGLE-VCASLGM----LTEEQA----EK-LAD 152 (335)
T ss_pred HHHHHHHcCCceEEEEE-------eccC--CCccHHHHHHHHHHHHHhcCcH-HhhccCC----CCHHHH----HH-HHH
Confidence 688899999 5666542 1333 2267888899999998888766 5555543 577887 34 558
Q ss_pred hCCCEEEe--CCCC------------CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHH
Q 022677 183 GGMDAIKL--EGGS------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALAL 248 (293)
Q Consensus 183 aGa~gVki--Egg~------------~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~ 248 (293)
+|++.++. |-.. +....+++.+.++||.+| .||..-.|.|.+ +-++.+..|
T Consensus 153 aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vc------------sGgI~GlGEs~e---Dri~~l~~L 217 (335)
T COG0502 153 AGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVC------------SGGIVGLGETVE---DRAELLLEL 217 (335)
T ss_pred cChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccc------------cceEecCCCCHH---HHHHHHHHH
Confidence 99999875 4321 124567888899999999 456555777644 345666677
Q ss_pred HHcC-CcEE
Q 022677 249 QEVG-CFSV 256 (293)
Q Consensus 249 eeAG-A~~I 256 (293)
.+-. .|+|
T Consensus 218 ~~l~~pdsV 226 (335)
T COG0502 218 ANLPTPDSV 226 (335)
T ss_pred HhCCCCCee
Confidence 7777 7766
No 474
>PRK07695 transcriptional regulator TenI; Provisional
Probab=78.75 E-value=44 Score=29.44 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=57.6
Q ss_pred CCHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEe
Q 022677 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (293)
Q Consensus 79 ~t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vva 158 (293)
..+..+|+.. . ..++..++++...+..++++|+|.+..|--..... .++.....++ ..+.+++..+.|++..
T Consensus 84 ~~~~~~r~~~-~-~~~ig~s~~s~e~a~~a~~~Gadyi~~g~v~~t~~--k~~~~~~g~~----~l~~~~~~~~ipvia~ 155 (201)
T PRK07695 84 FSVRSVREKF-P-YLHVGYSVHSLEEAIQAEKNGADYVVYGHVFPTDC--KKGVPARGLE----ELSDIARALSIPVIAI 155 (201)
T ss_pred CCHHHHHHhC-C-CCEEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCC--CCCCCCCCHH----HHHHHHHhCCCCEEEE
Confidence 3456666654 2 45677799999999999999999998652111111 1111222333 3355555567885543
Q ss_pred eCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 022677 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (293)
Q Consensus 159 DmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEg 192 (293)
|+- +++++ .+++ +.|+++|-+-.
T Consensus 156 ----GGI--~~~~~----~~~~-~~Ga~gvav~s 178 (201)
T PRK07695 156 ----GGI--TPENT----RDVL-AAGVSGIAVMS 178 (201)
T ss_pred ----cCC--CHHHH----HHHH-HcCCCEEEEEH
Confidence 544 56554 4556 58999997644
No 475
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=78.72 E-value=48 Score=29.52 Aligned_cols=143 Identities=22% Similarity=0.284 Sum_probs=74.7
Q ss_pred CHHHHHHhhhC-CCcEEEE-ecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEE
Q 022677 80 TLTHLRQKHKN-GEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (293)
Q Consensus 80 t~~~Lr~l~~~-g~pi~m~-tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vv 157 (293)
....+++..+. +.|+.+- +..|...|.-+-++|+|.+.+|+++-. | .+.+....+... .....+.
T Consensus 61 ~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~------d-----p~~~~~i~~~~g--~~~i~~s 127 (234)
T cd04732 61 NLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK------N-----PELVKELLKEYG--GERIVVG 127 (234)
T ss_pred CHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh------C-----hHHHHHHHHHcC--CceEEEE
Confidence 34445544332 3454443 457777777777799999999876621 1 222222222211 1123344
Q ss_pred eeCCCCC------CCCCHHHHHHHHHHHHHHhCCCEEEeCC----CC--CCcHHHHHHHHHc-CCcEEEeccccceeeee
Q 022677 158 GDLPFGT------YESSTNQAVDTAVRILKEGGMDAIKLEG----GS--PSRITAARGIVEA-GIAVMGHVGLTPQAISV 224 (293)
Q Consensus 158 aDmpfGs------y~~s~e~av~~A~rl~keaGa~gVkiEg----g~--~~~~~~ikal~~~-GIpV~GHiGLtPq~~~~ 224 (293)
.|++-|. ...+..+..+.+.+ +++.|++.+-+-+ |. ..-.+.++.+++. .+|++..-|
T Consensus 128 id~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GG-------- 198 (234)
T cd04732 128 LDAKDGKVATKGWLETSEVSLEELAKR-FEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGG-------- 198 (234)
T ss_pred EEeeCCEEEECCCeeecCCCHHHHHHH-HHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecC--------
Confidence 6765431 11122233333334 5578999887754 11 1124566777654 789886422
Q ss_pred cCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 022677 225 LGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258 (293)
Q Consensus 225 lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~Ivl 258 (293)
. ++. ++.+.+.+.||+++.+
T Consensus 199 ---i----~~~-------~di~~~~~~Ga~gv~v 218 (234)
T cd04732 199 ---V----SSL-------DDIKALKELGVAGVIV 218 (234)
T ss_pred ---C----CCH-------HHHHHHHHCCCCEEEE
Confidence 1 332 2344455569999876
No 476
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=78.53 E-value=31 Score=33.76 Aligned_cols=133 Identities=16% Similarity=0.200 Sum_probs=82.4
Q ss_pred ccCCCCccCCHHHHHHHHHHHHc-ccCCCeEEee-----CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHH
Q 022677 127 HGHDTTLPITLEEMLVHCRAVAR-GAKRPLLVGD-----LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITA 200 (293)
Q Consensus 127 lG~~dt~~vtl~eml~h~raV~R-a~~~p~vvaD-----mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ 200 (293)
-.+|.....|.++++.+++.... |.+ .++..- -+.|+...+++-.+..|+|.+|+.==+.+-|-|-. ..+
T Consensus 40 ~sMPG~~r~s~d~l~~~~~~~~~~Gi~-~v~LFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~Dvc--Lc~- 115 (314)
T cd00384 40 SSMPGVYRLSVDSLVEEAEELADLGIR-AVILFGIPEHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVC--LCE- 115 (314)
T ss_pred CCCCCceeeCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCcccccCCCChHHHHHHHHHHhCCCcEEEEeee--ccC-
Confidence 45677777778888777776654 332 222222 23455555667777888888886533555555532 011
Q ss_pred HHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhc------C
Q 022677 201 ARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSAL------Q 274 (293)
Q Consensus 201 ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l------~ 274 (293)
----||.|+.- +| .+ -+++..+.+.+.|..+.+||||+|=.-.+=+--...|.+.| +
T Consensus 116 --------YT~hGHcGil~------~~-~i--dND~Tl~~L~k~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~ 178 (314)
T cd00384 116 --------YTDHGHCGILK------DD-YV--DNDATLELLAKIAVSHAEAGADIVAPSDMMDGRVAAIREALDEAGFSD 178 (314)
T ss_pred --------CCCCCcceecc------CC-cC--ccHHHHHHHHHHHHHHHHcCCCeeecccccccHHHHHHHHHHHCCCCC
Confidence 01347888652 12 11 35667788999999999999999876655444446666665 4
Q ss_pred CCEEEe
Q 022677 275 IPTIGI 280 (293)
Q Consensus 275 iPtIGI 280 (293)
+|+++.
T Consensus 179 v~ImsY 184 (314)
T cd00384 179 VPIMSY 184 (314)
T ss_pred Cceeec
Confidence 777765
No 477
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=78.36 E-value=51 Score=29.67 Aligned_cols=110 Identities=19% Similarity=0.121 Sum_probs=64.7
Q ss_pred cCCHHHHHHhhhCC--CcEEEEecCCHHHHHHHHHcCCcEEEECchhhh----hhccCCCCccCCHHHHHHHHHHHHccc
Q 022677 78 RVTLTHLRQKHKNG--EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGA 151 (293)
Q Consensus 78 ~~t~~~Lr~l~~~g--~pi~m~tayD~~SAriae~AG~DailvGdSla~----~~lG~~dt~~vtl~eml~h~raV~Ra~ 151 (293)
.-....++.+.+.+ .++.+++--..-.++.+.++|+|.+.+.++..- ..++ -+.+-.+++++..++..++ .
T Consensus 51 ~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~--~~~~~~~~~~~~~i~~a~~-~ 127 (265)
T cd03174 51 EDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDSASETHSRKNLN--KSREEDLENAEEAIEAAKE-A 127 (265)
T ss_pred CCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhC--CCHHHHHHHHHHHHHHHHH-C
Confidence 33444555555544 466444444455677788899999976554431 1111 1122245666666665544 3
Q ss_pred CCCeEEeeCCCCCCC--CCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 022677 152 KRPLLVGDLPFGTYE--SSTNQAVDTAVRILKEGGMDAIKLEGG 193 (293)
Q Consensus 152 ~~p~vvaDmpfGsy~--~s~e~av~~A~rl~keaGa~gVkiEgg 193 (293)
+.. +...+.. .+. .++++..+.+.++. +.|++.|.+-|-
T Consensus 128 G~~-v~~~~~~-~~~~~~~~~~l~~~~~~~~-~~g~~~i~l~Dt 168 (265)
T cd03174 128 GLE-VEGSLED-AFGCKTDPEYVLEVAKALE-EAGADEISLKDT 168 (265)
T ss_pred CCe-EEEEEEe-ecCCCCCHHHHHHHHHHHH-HcCCCEEEechh
Confidence 445 5555532 233 58888877765555 799999999874
No 478
>PRK08227 autoinducer 2 aldolase; Validated
Probab=78.30 E-value=13 Score=35.36 Aligned_cols=88 Identities=15% Similarity=0.241 Sum_probs=59.7
Q ss_pred CHHHHHH----hhhCCCcEEEEecCC----------HHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHH
Q 022677 80 TLTHLRQ----KHKNGEPITMVTAYD----------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCR 145 (293)
Q Consensus 80 t~~~Lr~----l~~~g~pi~m~tayD----------~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~r 145 (293)
.+.+|.+ -++-|=|++.+.+.- +..||++.+.|.|+|=|-.. . + ..+
T Consensus 125 ~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~---------~------~----~f~ 185 (264)
T PRK08227 125 SIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYV---------E------E----GFE 185 (264)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCC---------H------H----HHH
Confidence 4545544 345577776644321 34589999999999987522 0 2 224
Q ss_pred HHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC
Q 022677 146 AVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (293)
Q Consensus 146 aV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE 191 (293)
.|.++.+.|+|++-=| ..+.++.++.+...+ ++|+.||-+=
T Consensus 186 ~vv~a~~vPVviaGG~----k~~~~~~L~~v~~ai-~aGa~Gv~~G 226 (264)
T PRK08227 186 RITAGCPVPIVIAGGK----KLPERDALEMCYQAI-DEGASGVDMG 226 (264)
T ss_pred HHHHcCCCcEEEeCCC----CCCHHHHHHHHHHHH-HcCCceeeec
Confidence 5666888998887644 346788999998889 5999999773
No 479
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=78.28 E-value=33 Score=33.61 Aligned_cols=134 Identities=17% Similarity=0.147 Sum_probs=86.4
Q ss_pred ccCCCCccCCHHHHHHHHHHHHc-ccCCCeEEee-------CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcH
Q 022677 127 HGHDTTLPITLEEMLVHCRAVAR-GAKRPLLVGD-------LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRI 198 (293)
Q Consensus 127 lG~~dt~~vtl~eml~h~raV~R-a~~~p~vvaD-------mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~ 198 (293)
-.+|.-...+++.+..+++...+ |.+ .++..- -++|+...+++..+..|+|.+|+.=-+.+-+-|-. ..
T Consensus 43 ~smPg~~r~s~d~l~~~v~~~~~~Gi~-~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVc--lc 119 (320)
T cd04823 43 PSMPGVFRLSIDELLKEAEEAVDLGIP-AVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVA--LD 119 (320)
T ss_pred CCCCCceeeCHHHHHHHHHHHHHcCCC-EEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeee--cc
Confidence 46778888889999888887665 443 333322 34577766777788888888886533555555422 01
Q ss_pred HHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhc-----
Q 022677 199 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSAL----- 273 (293)
Q Consensus 199 ~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l----- 273 (293)
+ ----||.|+.- .++ + -+++..+.+-+.|..+.+||||+|=.-.+=.--...|.+.|
T Consensus 120 ~---------YT~hGHcGil~-----~~~--i--dND~Tl~~L~~~Avs~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~ 181 (320)
T cd04823 120 P---------YTSHGHDGIVR-----DGG--I--LNDETVEVLCKQALVQAEAGADIVAPSDMMDGRIGAIREALDAEGF 181 (320)
T ss_pred C---------CCCCCcceecc-----CCc--C--cCHHHHHHHHHHHHHHHHhCCCEEEcccchhhHHHHHHHHHHHCCC
Confidence 1 01357888652 111 1 35667788899999999999999876655444446666655
Q ss_pred -CCCEEEeC
Q 022677 274 -QIPTIGIG 281 (293)
Q Consensus 274 -~iPtIGIG 281 (293)
++|+++.-
T Consensus 182 ~~v~ImSYs 190 (320)
T cd04823 182 TNVSILSYA 190 (320)
T ss_pred CCCceeech
Confidence 47887663
No 480
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=78.25 E-value=41 Score=32.73 Aligned_cols=45 Identities=31% Similarity=0.398 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEecC-C----------------------------C--HHHHHHHHHhcC--CCEEEeCC
Q 022677 238 AVKVVETALALQEVGCFSVVLEC-V----------------------------P--PPVAAAATSALQ--IPTIGIGA 282 (293)
Q Consensus 238 a~e~l~rA~a~eeAGA~~IvlE~-v----------------------------p--~e~a~~It~~l~--iPtIGIGa 282 (293)
-.++.+-|+++.++|+|+|.+-- + | -++++++.++++ +|+||+|.
T Consensus 172 ~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGG 249 (310)
T COG0167 172 ITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGG 249 (310)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 35778889999999999998543 1 1 156788889987 99999885
No 481
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=78.25 E-value=63 Score=32.54 Aligned_cols=136 Identities=21% Similarity=0.229 Sum_probs=81.2
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
-|+.+++.|+|.|=+|+-. ..+ .....++.+.. ..++ .+..-+ ......++-..+.+.++
T Consensus 29 Ia~~Ld~lGv~~IE~g~p~---------~s~----~~~~~~~~i~~--~~~~----~~~~~~-~~~~~~~~~~~ea~~~a 88 (409)
T COG0119 29 IAKALDDLGVDYIEAGFPV---------ASP----GDFEFVRAIAE--KAGL----FICALI-AALARAIKRDIEALLEA 88 (409)
T ss_pred HHHHHHHcCCCEEEEeCCc---------CCh----hhHHHHHHHHH--hcCc----ccchhh-hhhHHhHHhhHHHHHhC
Confidence 5778899999999987432 222 12333455553 2221 111112 12233444223344479
Q ss_pred CCCEEEeCCCCC-----------------CcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHH
Q 022677 184 GMDAIKLEGGSP-----------------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (293)
Q Consensus 184 Ga~gVkiEgg~~-----------------~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~ 246 (293)
|++.|++=...+ .+.+.++.+.+.|+++.++.- ++ -|+ +-+.+++-++
T Consensus 89 ~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~E----------d~---~rt--~~~~l~~~~~ 153 (409)
T COG0119 89 GVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAE----------DA---TRT--DPEFLAEVVK 153 (409)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEee----------cc---ccC--CHHHHHHHHH
Confidence 999988765421 244667788899988886521 11 144 3456777777
Q ss_pred HHHHcCCcEEEec-----CCCH---HHHHHHHHhcC
Q 022677 247 ALQEVGCFSVVLE-----CVPP---PVAAAATSALQ 274 (293)
Q Consensus 247 a~eeAGA~~IvlE-----~vp~---e~a~~It~~l~ 274 (293)
++.++||+.|.+. +.|. ++++.+.+.++
T Consensus 154 ~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 154 AAIEAGADRINLPDTVGVATPNEVADIIEALKANVP 189 (409)
T ss_pred HHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCC
Confidence 7889999999987 2452 67777777775
No 482
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.22 E-value=35 Score=30.27 Aligned_cols=94 Identities=22% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHH
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~ 246 (293)
.+++++++.+..++ ++|+..|.+-.-.....+.++.+.+ +.|......+.+.+ .+|++
T Consensus 21 ~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~----------~~~~~~~g~gtvl~-----------~d~~~ 78 (187)
T PRK07455 21 PDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLRE----------KLPECIIGTGTILT-----------LEDLE 78 (187)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHH----------hCCCcEEeEEEEEc-----------HHHHH
Q ss_pred HHHHcCCcEEEecCCCHHHHHHHHHhcCCCEEEeCCCC
Q 022677 247 ALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGP 284 (293)
Q Consensus 247 a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtIGIGaG~ 284 (293)
...++|||.++.++...++ ...++..++|.+ +|+..
T Consensus 79 ~A~~~gAdgv~~p~~~~~~-~~~~~~~~~~~i-~G~~t 114 (187)
T PRK07455 79 EAIAAGAQFCFTPHVDPEL-IEAAVAQDIPII-PGALT 114 (187)
T ss_pred HHHHcCCCEEECCCCCHHH-HHHHHHcCCCEE-cCcCC
No 483
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=78.20 E-value=48 Score=31.71 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccC---CCe-----EEeeCCCC-------
Q 022677 99 AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK---RPL-----LVGDLPFG------- 163 (293)
Q Consensus 99 ayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~---~p~-----vvaDmpfG------- 163 (293)
+.|+-....+=++||.-+.. |...++++|-+..+|.|++-+. .++ -++.-+.+
T Consensus 84 ~~~~e~i~~ai~~GftSVMi------------DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~ 151 (284)
T PRK12737 84 HEDLDDIKKKVRAGIRSVMI------------DGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKD 151 (284)
T ss_pred CCCHHHHHHHHHcCCCeEEe------------cCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccc
Confidence 45666666666777776665 4456899999999999887543 221 01111111
Q ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC---------CCcHHHHHHHHHc-CCcEEEec
Q 022677 164 -TYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGHV 215 (293)
Q Consensus 164 -sy~~s~e~av~~A~rl~keaGa~gVkiEgg~---------~~~~~~ikal~~~-GIpV~GHi 215 (293)
.| .+||++ .+|+++.|+|++=+-=|. ..-.++++.|.+. +||.+=|=
T Consensus 152 ~~~-T~peeA----~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHG 209 (284)
T PRK12737 152 AMY-TNPDAA----AEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHG 209 (284)
T ss_pred ccC-CCHHHH----HHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeC
Confidence 15 688888 578888999998877542 1344666777554 89999993
No 484
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=78.15 E-value=58 Score=30.21 Aligned_cols=146 Identities=19% Similarity=0.261 Sum_probs=77.2
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
.+..+.+.|.|+|++|.|. .+|.+.|..-+.+|++.. .|.+. .| |+. ++. . -
T Consensus 19 ~~~~~~~~gtdai~vGGS~-----------~vt~~~~~~~v~~ik~~~-lPvil--fp-~~~----~~i-------~--~ 70 (223)
T TIGR01768 19 IAKAAAESGTDAILIGGSQ-----------GVTYEKTDTLIEALRRYG-LPIIL--FP-SNP----TNV-------S--R 70 (223)
T ss_pred HHHHHHhcCCCEEEEcCCC-----------cccHHHHHHHHHHHhccC-CCEEE--eC-CCc----ccc-------C--c
Confidence 4455667899999999654 367788888888888755 89655 55 333 333 1 3
Q ss_pred CCCEEEeCC------CCCCcHHHHHHHHHcCCcEEEecc--ccceeeeec-C----CcccccCCH-HHHHHHHHHHHHH-
Q 022677 184 GMDAIKLEG------GSPSRITAARGIVEAGIAVMGHVG--LTPQAISVL-G----GFRPQGKNV-TSAVKVVETALAL- 248 (293)
Q Consensus 184 Ga~gVkiEg------g~~~~~~~ikal~~~GIpV~GHiG--LtPq~~~~l-g----Gf~vqGrt~-~~a~e~l~rA~a~- 248 (293)
+||++-+-- -.|..-..++ ++|..++++ +.|.-.-.+ + ++.-..++. -+-.++..-+..-
T Consensus 71 ~aDa~l~~svlNs~~~~~iig~~~~-----~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~ 145 (223)
T TIGR01768 71 DADALFFPSVLNSDDPYWIIGAQIE-----AAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAE 145 (223)
T ss_pred CCCEEEEEEeecCCCchHHHhHHHH-----HHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHH
Confidence 578876642 1121111112 122333332 233211000 0 111122222 1122333222222
Q ss_pred HHcCCcEEEecC-------CCHHHHHHHHHhc-CCCEEEeCCC
Q 022677 249 QEVGCFSVVLEC-------VPPPVAAAATSAL-QIPTIGIGAG 283 (293)
Q Consensus 249 eeAGA~~IvlE~-------vp~e~a~~It~~l-~iPtIGIGaG 283 (293)
+=-|--.+++|. ++.++++.+.+.+ ++|++ +|.|
T Consensus 146 ~~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~-vGGG 187 (223)
T TIGR01768 146 EMLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLF-VGGG 187 (223)
T ss_pred HHcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEE-EecC
Confidence 225888999993 2368999999998 89987 3554
No 485
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=78.13 E-value=24 Score=35.65 Aligned_cols=126 Identities=18% Similarity=0.175 Sum_probs=78.8
Q ss_pred HHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEe----CCCCC-----CcHHHHHHH---H-Hc
Q 022677 141 LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL----EGGSP-----SRITAARGI---V-EA 207 (293)
Q Consensus 141 l~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVki----Egg~~-----~~~~~ikal---~-~~ 207 (293)
+.=.|.+...-++| +++-+.--..+.|+++..+-+.++. .+|+|-||= -++.. ++....+++ . +-
T Consensus 120 i~GiR~~lgv~~RP-L~~tiiKP~~Glsp~~~a~~~y~~~-~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eT 197 (414)
T cd08206 120 IQGEREILGKYGRP-LLGTIVKPKLGLSPKEYARVVYEAL-RGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAET 197 (414)
T ss_pred chhHHHHhCCCCCc-eEEEecccccCCCHHHHHHHHHHHH-hcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 34456677777889 4544444446679999999999988 699999983 23321 111111111 1 11
Q ss_pred CCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHH---hcCCCEEEeCC
Q 022677 208 GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP--PPVAAAATS---ALQIPTIGIGA 282 (293)
Q Consensus 208 GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp--~e~a~~It~---~l~iPtIGIGa 282 (293)
|=+++ |. .--|.+..+++++|++...++|+.++.+-... -...+.+.+ ..++|+.+==|
T Consensus 198 G~~~~---------------y~-~NiT~~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ih~HrA 261 (414)
T cd08206 198 GEAKG---------------HY-LNITADTPEEMIKRAEFAKELGSVIVMVDGVTAGWTAIQSARRWCPDNGLALHAHRA 261 (414)
T ss_pred CCcce---------------EE-eccCCCcHHHHHHHHHHHHHhCCcEEEEeeecccHHHHHHHHHhccccCeEEEEccc
Confidence 22111 10 11233347899999999999999999998765 355677776 57788876444
Q ss_pred CC
Q 022677 283 GP 284 (293)
Q Consensus 283 G~ 284 (293)
|.
T Consensus 262 ~~ 263 (414)
T cd08206 262 GH 263 (414)
T ss_pred cc
Confidence 33
No 486
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=77.60 E-value=30 Score=39.37 Aligned_cols=121 Identities=22% Similarity=0.306 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHcccCCCeEE---eeCC--CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCC-CCcHHHHHHHHHc--
Q 022677 136 TLEEMLVHCRAVARGAKRPLLV---GDLP--FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEA-- 207 (293)
Q Consensus 136 tl~eml~h~raV~Ra~~~p~vv---aDmp--fGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~-~~~~~~ikal~~~-- 207 (293)
.-++|..+++.+.+.++.|+.+ +.+| ++.|..++++-.+.+.++++++|+.. =||+ ...++-|++|.++
T Consensus 237 gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~ggv~I---IGGCCGTtPeHI~ala~~l~ 313 (1178)
T TIGR02082 237 GPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAAEGGLNI---VGGCCGTTPDHIRAIAEAVK 313 (1178)
T ss_pred CHHHHHHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHhCCCcE---EEecCCCCHHHHHHHHHHhh
Confidence 3689999999999988888665 3443 24688899998888888886445554 4763 3345556666541
Q ss_pred CC-cEE--Ee--c----cccceeeeecCCccccc-CCHH-------------HHHHHHHHHHHHHHcCCcEEEec
Q 022677 208 GI-AVM--GH--V----GLTPQAISVLGGFRPQG-KNVT-------------SAVKVVETALALQEVGCFSVVLE 259 (293)
Q Consensus 208 GI-pV~--GH--i----GLtPq~~~~lgGf~vqG-rt~~-------------~a~e~l~rA~a~eeAGA~~IvlE 259 (293)
|+ |.. .+ . ++.+-.......|.++| |+.. +.++++++|+...++||+.|=+=
T Consensus 314 ~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a~~~A~~qve~GA~iIDVn 388 (1178)
T TIGR02082 314 NIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGERTNVAGSKKFRRLIIAEDYDEALDIAKQQVENGAQILDIN 388 (1178)
T ss_pred cCCCCCCCCcccceeecCceEEeecCCCceEEEeeccchhhhHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 11 110 00 0 11111111123566777 4321 12689999999999999998753
No 487
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=77.55 E-value=59 Score=29.96 Aligned_cols=114 Identities=8% Similarity=0.001 Sum_probs=66.1
Q ss_pred CCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhh----hccCCCCccCCHHHHH----HHHHHHHcccCCCeEEeeCCC
Q 022677 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV----VHGHDTTLPITLEEML----VHCRAVARGAKRPLLVGDLPF 162 (293)
Q Consensus 91 g~pi~m~tayD~~SAriae~AG~DailvGdSla~~----~lG~~dt~~vtl~eml----~h~raV~Ra~~~p~vvaDmpf 162 (293)
+..+.+..-.+.--...+.++|+|.|-+..+.+-. .+| .|.+|.+ ..++..+ ..+. .+....|+
T Consensus 61 ~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~------~~~~~~~~~~~~~i~~a~-~~G~-~v~~~~~~ 132 (259)
T cd07939 61 PARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLG------KDRAWVLDQLRRLVGRAK-DRGL-FVSVGAED 132 (259)
T ss_pred CCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhC------CCHHHHHHHHHHHHHHHH-HCCC-eEEEeecc
Confidence 34455554345545566778899998654444322 333 3455544 3333332 2333 35677787
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCC-----CcHHHHHHHHH-cCCcEEEe
Q 022677 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----SRITAARGIVE-AGIAVMGH 214 (293)
Q Consensus 163 Gsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~-----~~~~~ikal~~-~GIpV~GH 214 (293)
.+. .+++..++.+.++. +.|++.|.|=|-.. .....++.+.+ .++|+--|
T Consensus 133 ~~~-~~~~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H 188 (259)
T cd07939 133 ASR-ADPDFLIEFAEVAQ-EAGADRLRFADTVGILDPFTTYELIRRLRAATDLPLEFH 188 (259)
T ss_pred CCC-CCHHHHHHHHHHHH-HCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 544 68898888887776 69999999998532 12334444543 24555544
No 488
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=77.51 E-value=48 Score=31.70 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=42.7
Q ss_pred HHHHHhCCCEEEe---CCCC--------------CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHH
Q 022677 178 RILKEGGMDAIKL---EGGS--------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (293)
Q Consensus 178 rl~keaGa~gVki---Egg~--------------~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e 240 (293)
+.++++|++.+.. |-.. +.....++.+.+.||++|.|+= +| .|.|.++..+
T Consensus 147 ~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~i--------iG----lgEt~ed~~~ 214 (340)
T TIGR03699 147 ERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMM--------FG----HVETLEDRIE 214 (340)
T ss_pred HHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeE--------ee----CCCCHHHHHH
Confidence 5577899988752 2110 0124567788899999987621 11 3667666666
Q ss_pred HHHHHHHHH-HcCCcEEEec
Q 022677 241 VVETALALQ-EVGCFSVVLE 259 (293)
Q Consensus 241 ~l~rA~a~e-eAGA~~IvlE 259 (293)
.++..+.++ +.+.|..|++
T Consensus 215 ~l~~l~~l~~~~~~~~~fIP 234 (340)
T TIGR03699 215 HLERIRELQDKTGGFTAFIP 234 (340)
T ss_pred HHHHHHHhchhhCCeeEEEe
Confidence 666666665 3455556555
No 489
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=77.49 E-value=2.9 Score=39.03 Aligned_cols=44 Identities=30% Similarity=0.429 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHhcCCCEEEeC
Q 022677 238 AVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 238 a~e~l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l~iPtIGIG 281 (293)
+..++.....-++-|+|++++-|..+.....+.+..++|+|||+
T Consensus 55 ~~~~l~ei~~~~~~GvdaiiIaCf~DPgl~~~Re~~~~PviGi~ 98 (230)
T COG4126 55 APGLLREIADGEEQGVDAIIIACFSDPGLAAARERAAIPVIGIC 98 (230)
T ss_pred hhHHHHHhhcccccCCcEEEEEecCChHHHHHHHHhCCCceehh
Confidence 45778888888889999999999998888999999999999996
No 490
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=77.47 E-value=18 Score=35.41 Aligned_cols=113 Identities=16% Similarity=0.261 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCcHHHHHHHHHcCCcEEEe
Q 022677 135 ITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGH 214 (293)
Q Consensus 135 vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~~~~ikal~~~GIpV~GH 214 (293)
+++++. ......|+..+.+|++ .|| +. +. ++++.+-|++.+||--+.-.-.++++++.+.|.|+.-=
T Consensus 73 l~~e~~-~~L~~~~~~~Gi~~~s--tpf-----d~-~s----vd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilS 139 (329)
T TIGR03569 73 LSEEDH-RELKEYCESKGIEFLS--TPF-----DL-ES----ADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILS 139 (329)
T ss_pred CCHHHH-HHHHHHHHHhCCcEEE--EeC-----CH-HH----HHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEE
Confidence 444443 3445566777777655 344 22 33 25677789999999765433578999999999999732
Q ss_pred ccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCc---EEEecCCC----------HHHHHHHHHhcCCCEE
Q 022677 215 VGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCF---SVVLECVP----------PPVAAAATSALQIPTI 278 (293)
Q Consensus 215 iGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~---~IvlE~vp----------~e~a~~It~~l~iPtI 278 (293)
.| . -| .+|+.+-+..+.++|+. .+++.|+. -..+..+.+..++|+.
T Consensus 140 tG--------------m-at---l~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG 198 (329)
T TIGR03569 140 TG--------------M-AT---LEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVG 198 (329)
T ss_pred CC--------------C-CC---HHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEE
Confidence 22 1 13 34555555566789985 78888864 1467788888888865
No 491
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=77.46 E-value=33 Score=31.56 Aligned_cols=88 Identities=7% Similarity=0.083 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHH-hCCCEEEeCCC------CCCcHHHHHHHHH-cCCcEEEeccccceeeeecCCcccccCCHHHH
Q 022677 167 SSTNQAVDTAVRILKE-GGMDAIKLEGG------SPSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSA 238 (293)
Q Consensus 167 ~s~e~av~~A~rl~ke-aGa~gVkiEgg------~~~~~~~ikal~~-~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a 238 (293)
.||.+. | +.+.+ .||+-+++=|= .+...++++.+.+ .++|++ .-||. |+
T Consensus 31 ~dp~~~---a-~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~-----------vGGGI----rs---- 87 (234)
T PRK13587 31 RSAEES---I-AYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIE-----------VGGGI----RT---- 87 (234)
T ss_pred CCHHHH---H-HHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEE-----------EcCCc----CC----
Confidence 466554 2 34445 68998888651 2223567887765 346664 12222 55
Q ss_pred HHHHHHHHHHHHcCCcEEEecCC--C-HHHHHHHHHhcC-CCEEEe
Q 022677 239 VKVVETALALQEVGCFSVVLECV--P-PPVAAAATSALQ-IPTIGI 280 (293)
Q Consensus 239 ~e~l~rA~a~eeAGA~~IvlE~v--p-~e~a~~It~~l~-iPtIGI 280 (293)
+++++.|.++||+-+++=.. . +++.+.+.++.+ -.+++|
T Consensus 88 ---~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvsl 130 (234)
T PRK13587 88 ---KSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSV 130 (234)
T ss_pred ---HHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEE
Confidence 55677777899999998643 3 578888888873 344444
No 492
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=77.27 E-value=6.4 Score=38.81 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCCCH---HHHHHHHHhcCCCEEE
Q 022677 236 TSAVKVVETALALQEVGCFSVVLECVPP---PVAAAATSALQIPTIG 279 (293)
Q Consensus 236 ~~a~e~l~rA~a~eeAGA~~IvlE~vp~---e~a~~It~~l~iPtIG 279 (293)
.+.+..+++.++|++|||+.+=+-.... +....|.+..++|++.
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVA 77 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVA 77 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEE
Confidence 4678999999999999999998876653 6778889999999984
No 493
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=77.27 E-value=21 Score=36.67 Aligned_cols=124 Identities=17% Similarity=0.092 Sum_probs=77.4
Q ss_pred HHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeC----CCCC-----CcHHHHHHH---H-HcC
Q 022677 142 VHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE----GGSP-----SRITAARGI---V-EAG 208 (293)
Q Consensus 142 ~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaGa~gVkiE----gg~~-----~~~~~ikal---~-~~G 208 (293)
.=+|.+...-++| +++-+.--..+.|+++..+-+.++. .+|+|-||=- ++.. ++....+++ . +-|
T Consensus 149 ~GiR~~lgv~~RP-L~gtiiKP~~GLsp~~~a~~~y~~~-~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG 226 (468)
T PRK04208 149 QVERERLDKYGRP-LLGTTPKPKLGLSAKNYGRVVYEAL-RGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETG 226 (468)
T ss_pred hhHHHHhCCCCCc-eEEEeeccccCCCHHHHHHHHHHHH-hcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhC
Confidence 3456777777889 4544444456789999999999998 6999999842 2221 111111111 1 112
Q ss_pred CcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHH---hcCCCEEEeCCC
Q 022677 209 IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP--PPVAAAATS---ALQIPTIGIGAG 283 (293)
Q Consensus 209 IpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~vp--~e~a~~It~---~l~iPtIGIGaG 283 (293)
-+++ |. .--|.++..++++|++...++|+.++.+-... -...+.+.+ ..++|+.+==||
T Consensus 227 ~~k~---------------y~-~NiT~~~~~em~~ra~~~~e~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~IhaHrA~ 290 (468)
T PRK04208 227 ERKG---------------HY-LNVTAPTMEEMYKRAEFAKELGSPIVMIDVVTAGWTALQSLREWCRDNGLALHAHRAM 290 (468)
T ss_pred Ccce---------------EE-EecCCCCHHHHHHHHHHHHHhCCCEEEEeccccccHHHHHHHHhhhcCCcEEEecCCc
Confidence 1111 11 11233347899999999999999999998776 244565654 778998754333
No 494
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=77.26 E-value=44 Score=29.06 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEec-CCC--HHHHHHHHHhcCCCEEEeCCCC
Q 022677 234 NVTSAVKVVETALALQEVGCFSVVLE-CVP--PPVAAAATSALQIPTIGIGAGP 284 (293)
Q Consensus 234 t~~~a~e~l~rA~a~eeAGA~~IvlE-~vp--~e~a~~It~~l~iPtIGIGaG~ 284 (293)
+.++.+++++ .+.++|+|.|++= +.| +..+....+.++.+ +.||.|.
T Consensus 86 ~~~~~~~i~~---~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~ 135 (172)
T PF03808_consen 86 DEEEEEAIIN---RINASGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGG 135 (172)
T ss_pred ChhhHHHHHH---HHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECc
Confidence 3444455555 5667999999987 567 57899999999998 4455554
No 495
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=77.26 E-value=33 Score=32.31 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCC--CCcHHHHHHHHHc-C-CcEEEeccccceeeeecCCcccccCCHHHHHHHH
Q 022677 167 SSTNQAVDTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEA-G-IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVV 242 (293)
Q Consensus 167 ~s~e~av~~A~rl~keaGa~gVkiEgg~--~~~~~~ikal~~~-G-IpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l 242 (293)
.++++.++.+.++. +.|..++||--|. +.....++++.++ | ++++ .... ++-+. .+++
T Consensus 133 ~~~~~~~~~~~~~~-~~Gf~~iKik~g~~~~~d~~~v~~lr~~~g~~~l~---------vD~n-----~~~~~---~~A~ 194 (316)
T cd03319 133 DTPEAMAAAAKKAA-KRGFPLLKIKLGGDLEDDIERIRAIREAAPDARLR---------VDAN-----QGWTP---EEAV 194 (316)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEEeCCChhhHHHHHHHHHHhCCCCeEE---------EeCC-----CCcCH---HHHH
Confidence 36788888887777 5789999986432 1234566666652 2 2222 1111 23333 4677
Q ss_pred HHHHHHHHcCCcEEEecCCC--HHHHHHHHHhcCCCEEE
Q 022677 243 ETALALQEVGCFSVVLECVP--PPVAAAATSALQIPTIG 279 (293)
Q Consensus 243 ~rA~a~eeAGA~~IvlE~vp--~e~a~~It~~l~iPtIG 279 (293)
+.++++++.|.+.|.=++.+ .+..+++++.+++|+++
T Consensus 195 ~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~ 233 (316)
T cd03319 195 ELLRELAELGVELIEQPVPAGDDDGLAYLRDKSPLPIMA 233 (316)
T ss_pred HHHHHHHhcCCCEEECCCCCCCHHHHHHHHhcCCCCEEE
Confidence 88888888887665422434 37788999999999774
No 496
>PLN02389 biotin synthase
Probab=77.20 E-value=40 Score=33.45 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=65.8
Q ss_pred HHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHhC
Q 022677 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (293)
Q Consensus 105 Ariae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~keaG 184 (293)
|+.+.+.|+.-++.+.+. .| ....+..++.++..++.|++ .+.. +. .-.| + .+.|+. +.++++|
T Consensus 125 a~~~~~~G~~~~~ivts~----rg-~~~e~~~~e~i~eiir~ik~-~~l~-i~--~s~G-~-l~~E~l-----~~LkeAG 188 (379)
T PLN02389 125 AKRAKEAGSTRFCMGAAW----RD-TVGRKTNFNQILEYVKEIRG-MGME-VC--CTLG-M-LEKEQA-----AQLKEAG 188 (379)
T ss_pred HHHHHHcCCCEEEEEecc----cC-CCCChhHHHHHHHHHHHHhc-CCcE-EE--ECCC-C-CCHHHH-----HHHHHcC
Confidence 334456688776543221 11 11223468889998999873 3332 33 3333 4 455554 4567899
Q ss_pred CCEEE--eCCCC------------CCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHH
Q 022677 185 MDAIK--LEGGS------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALAL 248 (293)
Q Consensus 185 a~gVk--iEgg~------------~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~ 248 (293)
++.++ +|... +.....++.+.+.||++|.|+= + | .|.|.++..+.+...+.+
T Consensus 189 ld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~I--------i-G---lgEt~edrv~~l~~Lr~L 254 (379)
T PLN02389 189 LTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGI--------I-G---LGEAEEDRVGLLHTLATL 254 (379)
T ss_pred CCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEE--------E-C---CCCCHHHHHHHHHHHHhc
Confidence 99775 55311 0123678888999999998821 1 1 256665555555555554
No 497
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.11 E-value=6.1 Score=37.64 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHhc--CCCEEEeCC
Q 022677 242 VETALALQEVGCFSVVLECVPPPVAAAATSAL--QIPTIGIGA 282 (293)
Q Consensus 242 l~rA~a~eeAGA~~IvlE~vp~e~a~~It~~l--~iPtIGIGa 282 (293)
++.++...++|||.|.+..+..|..+++.+.+ ++|+..+|.
T Consensus 199 leea~eA~~~gaD~I~LD~~~~e~l~~~v~~~~~~i~leAsGG 241 (277)
T PRK05742 199 LDELRQALAAGADIVMLDELSLDDMREAVRLTAGRAKLEASGG 241 (277)
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCCcEEEECC
Confidence 56677777999999999999888788888877 799999883
No 498
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=76.91 E-value=53 Score=29.11 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=67.6
Q ss_pred HHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCC-CCCCCCHHHHHHHHHHHHHHhC
Q 022677 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEGG 184 (293)
Q Consensus 106 riae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpf-Gsy~~s~e~av~~A~rl~keaG 184 (293)
+.+-++|+|++.+---. +.-++..++ +.+.+.--..+++.++.. +.+ ....+-++.+.++-.+.|
T Consensus 74 ~~~~~~gad~vtvh~e~----------g~~~l~~~i---~~~~~~g~~~~v~~~~~~~~~~-~~~~~~~~~v~~m~~e~G 139 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFT----------GRDSLKAVV---EAAAESGGKVFVVVEMSHPGAL-EFIQPHADKLAKLAQEAG 139 (215)
T ss_pred HHHHhCCCCEEEEcCcC----------CHHHHHHHH---HHHHhcCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHHHHhC
Confidence 44557999998763111 101233333 333332123334455542 122 233445666677777899
Q ss_pred CCEEEeCCCCCCcHHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHHHHHHHHHHHHHHcCCcEEEecC-C--
Q 022677 185 MDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC-V-- 261 (293)
Q Consensus 185 a~gVkiEgg~~~~~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a~e~l~rA~a~eeAGA~~IvlE~-v-- 261 (293)
.++.++.... .+.++.+.+. ++. ++ .. ..||.+.+|.+ .+.+.++||+.+++=- +
T Consensus 140 ~~g~~~~~~~---~~~i~~l~~~-~~~--~~-----~i-vdgGI~~~g~~----------~~~~~~aGad~iV~Gr~I~~ 197 (215)
T PRK13813 140 AFGVVAPATR---PERVRYIRSR-LGD--EL-----KI-ISPGIGAQGGK----------AADAIKAGADYVIVGRSIYN 197 (215)
T ss_pred CCeEEECCCc---chhHHHHHHh-cCC--Cc-----EE-EeCCcCCCCCC----------HHHHHHcCCCEEEECcccCC
Confidence 9999987533 3334444431 000 00 01 34566666543 5566778999887641 2
Q ss_pred ---CHHHHHHHHHhc
Q 022677 262 ---PPPVAAAATSAL 273 (293)
Q Consensus 262 ---p~e~a~~It~~l 273 (293)
|.+.++.+.+.+
T Consensus 198 ~~d~~~~~~~l~~~~ 212 (215)
T PRK13813 198 AADPREAAKAINEEI 212 (215)
T ss_pred CCCHHHHHHHHHHHH
Confidence 245666665543
No 499
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=76.91 E-value=59 Score=29.65 Aligned_cols=127 Identities=18% Similarity=0.212 Sum_probs=78.7
Q ss_pred CHHHHHHhhhCCCcEEEEecCCHHHHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEee
Q 022677 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (293)
Q Consensus 80 t~~~Lr~l~~~g~pi~m~tayD~~SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaD 159 (293)
.++.+++.+. .-.+=.=|..|.-.++.+-++|.+.|++-. .-.|++.+|+. .+.|+
T Consensus 49 ~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP~---------------~~~~v~~~~~~----~~i~~---- 104 (204)
T TIGR01182 49 AIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQFIVSPG---------------LTPELAKHAQD----HGIPI---- 104 (204)
T ss_pred HHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEECCC---------------CCHHHHHHHHH----cCCcE----
Confidence 3455554442 222333378999999999999999997641 12366665553 34442
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCCCCCc-HHHHHHHHHcCCcEEEeccccceeeeecCCcccccCCHHHH
Q 022677 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR-ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSA 238 (293)
Q Consensus 160 mpfGsy~~s~e~av~~A~rl~keaGa~gVkiEgg~~~~-~~~ikal~~~GIpV~GHiGLtPq~~~~lgGf~vqGrt~~~a 238 (293)
+| |-. ++.|+. +.+ +.|++.||+=-....- +..+|.|.. .+.|+-+.| .| |-+
T Consensus 105 iP-G~~--TptEi~----~A~-~~Ga~~vKlFPA~~~GG~~yikal~~----plp~i~~~p-----tG-----GV~---- 158 (204)
T TIGR01182 105 IP-GVA--TPSEIM----LAL-ELGITALKLFPAEVSGGVKMLKALAG----PFPQVRFCP-----TG-----GIN---- 158 (204)
T ss_pred EC-CCC--CHHHHH----HHH-HCCCCEEEECCchhcCCHHHHHHHhc----cCCCCcEEe-----cC-----CCC----
Confidence 33 544 788884 456 6999999997432111 466777775 446666555 23 333
Q ss_pred HHHHHHHHHHHHcCCcEEEec
Q 022677 239 VKVVETALALQEVGCFSVVLE 259 (293)
Q Consensus 239 ~e~l~rA~a~eeAGA~~IvlE 259 (293)
.+....|.+||+.++.+=
T Consensus 159 ---~~N~~~~l~aGa~~vg~G 176 (204)
T TIGR01182 159 ---LANVRDYLAAPNVACGGG 176 (204)
T ss_pred ---HHHHHHHHhCCCEEEEEC
Confidence 246677888888887653
No 500
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=76.90 E-value=4.2 Score=37.11 Aligned_cols=152 Identities=20% Similarity=0.284 Sum_probs=86.3
Q ss_pred HHHHHHHcCCcEEEECchhhhhhccCCCCccCCHHHHHHHHHHHHcccCCCeEEeeCCCCCCCCCHHHHHHHHHHHHHHh
Q 022677 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (293)
Q Consensus 104 SAriae~AG~DailvGdSla~~~lG~~dt~~vtl~eml~h~raV~Ra~~~p~vvaDmpfGsy~~s~e~av~~A~rl~kea 183 (293)
.|+..++.|+|-+.+=|-= ...-| -.......+.+++.++.| +.+| |+. .|.+++ .+++ +.
T Consensus 34 ~a~~~~~~g~~~l~ivDLd-aa~~g--------~~~n~~~i~~i~~~~~~~-i~vg---GGI-rs~ed~----~~ll-~~ 94 (229)
T PF00977_consen 34 VAKAFNEQGADELHIVDLD-AAKEG--------RGSNLELIKEIAKETGIP-IQVG---GGI-RSIEDA----ERLL-DA 94 (229)
T ss_dssp HHHHHHHTT-SEEEEEEHH-HHCCT--------HHHHHHHHHHHHHHSSSE-EEEE---SSE--SHHHH----HHHH-HT
T ss_pred HHHHHHHcCCCEEEEEEcc-CcccC--------chhHHHHHHHHHhcCCcc-EEEe---Ccc-CcHHHH----HHHH-Hh
Confidence 5666678899999765732 22222 224456677888888777 6677 667 577777 5677 68
Q ss_pred CCCEEEeCCCCCCcHHHHHHHHHc-CC-cEEEeccccceeeeecCCcccc--cCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 022677 184 GMDAIKLEGGSPSRITAARGIVEA-GI-AVMGHVGLTPQAISVLGGFRPQ--GKNVTSAVKVVETALALQEVGCFSVVLE 259 (293)
Q Consensus 184 Ga~gVkiEgg~~~~~~~ikal~~~-GI-pV~GHiGLtPq~~~~lgGf~vq--Grt~~~a~e~l~rA~a~eeAGA~~IvlE 259 (293)
||+-|-+---...-+..++.+.+. |- .++-=+. ...||++. |-.+.....+.+-++.+.+.|+.-+++-
T Consensus 95 Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD-------~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~t 167 (229)
T PF00977_consen 95 GADRVVIGTEALEDPELLEELAERYGSQRIVVSLD-------ARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILT 167 (229)
T ss_dssp T-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEE-------EEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEE
T ss_pred CCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEE-------eeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEe
Confidence 999877731110112344444431 21 2221111 11133332 2222222356677788889999988865
Q ss_pred CC---------CHHHHHHHHHhcCCCEEEeC
Q 022677 260 CV---------PPPVAAAATSALQIPTIGIG 281 (293)
Q Consensus 260 ~v---------p~e~a~~It~~l~iPtIGIG 281 (293)
.+ .-++.+.+++..++|+|.=|
T Consensus 168 di~~dGt~~G~d~~~~~~l~~~~~~~viasG 198 (229)
T PF00977_consen 168 DIDRDGTMQGPDLELLKQLAEAVNIPVIASG 198 (229)
T ss_dssp ETTTTTTSSS--HHHHHHHHHHHSSEEEEES
T ss_pred eccccCCcCCCCHHHHHHHHHHcCCCEEEec
Confidence 44 24888999999999999544
Done!