BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022678
(293 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225459534|ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
vinifera]
gi|302141830|emb|CBI19033.3| unnamed protein product [Vitis vinifera]
Length = 297
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/298 (77%), Positives = 258/298 (86%), Gaps = 8/298 (2%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MA PSKLYSDDVSL+VVLLDTNPFFWS++SL FS+FL+HVLAFLN+IL +NQLNQVVVI
Sbjct: 1 MAPVPSKLYSDDVSLLVVLLDTNPFFWSTASLPFSKFLSHVLAFLNSILLINQLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSST-GNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
ATG NSC++++DSSS N ++ NGRMP+LC+ LLQ LEEF+ DE+L K+ I S
Sbjct: 61 ATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSS 120
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDS 174
LLSGSLSMALCYIQRVFR+G LHPQPR GSPDGPEQYVA+MNAIFSAQRSMVPIDS
Sbjct: 121 LLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDS 180
Query: 175 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 234
C +GAQ+SAFLQQASYITGGV+ KPQQLDGLFQYL T+F TDLHSR FLQLPKP GVDFR
Sbjct: 181 CVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFR 240
Query: 235 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRKTTD 292
ASCFCHKNTIDMGYICSVCLSI+CKH KKCSTCGSVFGQA QSD SAT+RKRKT +
Sbjct: 241 ASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQA--QSDGNSATDRKRKTPE 296
>gi|449470273|ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
sativus]
Length = 295
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 224/297 (75%), Positives = 254/297 (85%), Gaps = 7/297 (2%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MASAPSKLY+DDVSL+VVLLDTNPFFWS+S+L FS+FL+HVLAFLN+IL LNQLN+VVVI
Sbjct: 1 MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
TGY SC Y+Y+SSS N + +GRMP+LC LL+NLEEF+ DEQ K++P+G SL
Sbjct: 61 GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSC 175
LSGSLSMALCYIQ+VFRSG LHPQPR GSPDGPEQYVAIMNAIFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
Query: 176 YLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA 235
Y+G+ NSAFLQQASYITGGV+ KPQQ+DGLFQYL T+FGTDLHSR FLQLPK VGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240
Query: 236 SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRKTTD 292
SCFCHK TIDMGY+CSVCLSI+CKH KKCSTCGSVFG+ + D S + KRKT +
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELD--SVSKLKRKTPE 295
>gi|18394597|ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
thaliana]
gi|21537277|gb|AAM61618.1| unknown [Arabidopsis thaliana]
gi|92856638|gb|ABE77412.1| At1g18340 [Arabidopsis thaliana]
gi|332191584|gb|AEE29705.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
thaliana]
Length = 301
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/299 (74%), Positives = 254/299 (84%), Gaps = 12/299 (4%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M + SK YSDDVSL+V+LLDTNP FWS++S++FSQFL+HVLAFLNA+L LNQLNQVVVI
Sbjct: 1 MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGN----QSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-PEGR 115
ATGY+SCDY+YDSS T N +S G G MP++ +LL+ LEEF+ KDE+L K+E E R
Sbjct: 61 ATGYSSCDYIYDSSLTSNHGNFESNGTG-MPAIFGSLLKKLEEFVTKDEELSKEEVSEDR 119
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMV 170
I LLSGSLSMALCYIQRVFRSG LHPQPR GSPDGPEQYVA+MN+IFSAQR MV
Sbjct: 120 IPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMV 179
Query: 171 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 230
PIDSCY+G QNSAFLQQASYITGGVHH P+QLDGLFQYL TIF TDLHSR F+QLPKP+G
Sbjct: 180 PIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIG 239
Query: 231 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 289
VDFRASCFCHK TIDMGYICSVCLSI+C+H KKCSTCGSVFGQ++ D SA+++KRK
Sbjct: 240 VDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD-DASSASDKKRK 297
>gi|297850232|ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
lyrata]
gi|297338839|gb|EFH69256.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
lyrata]
Length = 301
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/299 (73%), Positives = 254/299 (84%), Gaps = 12/299 (4%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M S SK YSDDVSL+V+LLDTNP FWS++S++FSQFL+HVLAFLNA+L LNQLNQVVVI
Sbjct: 1 MPSVVSKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGN----QSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-PEGR 115
ATGY+SCDY+YDSS T N +S G G MP+L +LL+ LE+F+ KDE+L ++E E R
Sbjct: 61 ATGYSSCDYIYDSSLTSNHGNLESNGTG-MPALFGSLLKKLEDFVTKDEELSREEVSEDR 119
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMV 170
I LLSGSLSMALCYIQRVFRSG LHPQPR GSPDGPEQYVA+MN+IFSAQR MV
Sbjct: 120 IPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMV 179
Query: 171 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 230
PIDSCY+G QNSAFLQQASYITGGVHH P+QLDGLFQYL TIF TDLHSR+F+QLPKP+G
Sbjct: 180 PIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPIG 239
Query: 231 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 289
VDFRASCFCHK TIDMGYICSVCLSI+C+H KKCSTCGSVFGQ++ D S +++KRK
Sbjct: 240 VDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD-DASSVSDKKRK 297
>gi|224084866|ref|XP_002307429.1| predicted protein [Populus trichocarpa]
gi|222856878|gb|EEE94425.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/290 (76%), Positives = 249/290 (85%), Gaps = 9/290 (3%)
Query: 10 SDDVSLVVVLLDTNPFFWSS-SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
+DDVSLVVVLLDTNPFFW+ SSLSFSQFL+HVLAF+N+IL LNQLNQVVVIA+GYN+CD
Sbjct: 1 ADDVSLVVVLLDTNPFFWTPPSSLSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCD 60
Query: 69 YVYDSSSTGNQ-SVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSM 127
Y+YDSSS +Q +GRMPSL + LLQ LEEFM KDE+LGK++ + I SLLSGSLSM
Sbjct: 61 YIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSM 120
Query: 128 ALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 182
ALCYIQRVFRSG LHPQPR GSPDGPEQYVA+MNAIFSAQRSMVPIDSCY+GA NS
Sbjct: 121 ALCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNS 180
Query: 183 AFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKN 242
AFLQQASYITGGV+ KPQ LDGLFQYL T+F TDLHSR+F+QLP+P GVDFRASCFCHK
Sbjct: 181 AFLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKT 240
Query: 243 TIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRKTTD 292
TIDMGYICSVCLSI+C H KKCSTCGSVFGQA QSD S ++ KRK +
Sbjct: 241 TIDMGYICSVCLSIFCNHHKKCSTCGSVFGQA--QSDTSSTSDLKRKAPE 288
>gi|255584434|ref|XP_002532948.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
communis]
gi|223527277|gb|EEF29432.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
communis]
Length = 266
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/257 (77%), Positives = 225/257 (87%), Gaps = 6/257 (2%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MAS PSKLYSDDVSLV+VLLDTNPFFW++SSL FSQFL+HVLAFLN+IL LNQLNQVVVI
Sbjct: 1 MASVPSKLYSDDVSLVMVLLDTNPFFWTTSSLPFSQFLSHVLAFLNSILLLNQLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK-QEPEGRIACS 119
A GYNSCDY+YDSS N S GR+P+L + LLQ LE+FM +DE+LGK +E + +IA S
Sbjct: 61 ANGYNSCDYIYDSSLVMNHSSDEGRIPALYSDLLQKLEDFMIRDEKLGKGEESKRKIASS 120
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDS 174
LLSGSLSMALCYIQR+FRSG LHPQPR GSPDGPEQYVA+MN+IFSAQRSMVPIDS
Sbjct: 121 LLSGSLSMALCYIQRIFRSGPLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDS 180
Query: 175 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 234
CY+G NSAFLQQASYITGGV+ KPQ LDGLFQYL+T+F TDLHSR+FLQLP+P GVDFR
Sbjct: 181 CYVGGHNSAFLQQASYITGGVYVKPQHLDGLFQYLVTVFATDLHSRSFLQLPRPAGVDFR 240
Query: 235 ASCFCHKNTIDMGYICS 251
ASCFCHK TIDMG+ICS
Sbjct: 241 ASCFCHKTTIDMGFICS 257
>gi|357461529|ref|XP_003601046.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355490094|gb|AES71297.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 340
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/337 (60%), Positives = 238/337 (70%), Gaps = 52/337 (15%)
Query: 3 SAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
SAPSK Y+DDVSL+VV LDTNPFFWSS FS+FL+ VLAFLN+IL L QLNQVVVIAT
Sbjct: 4 SAPSKNYADDVSLLVVTLDTNPFFWSSFPFHFSEFLSQVLAFLNSILLLGQLNQVVVIAT 63
Query: 63 GYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK-QEPEGRIACSLL 121
G NSC YVYDS+S N + NG MP++ + LL NL+EF+ KD+QL G I SLL
Sbjct: 64 GCNSCSYVYDSASDKNHASTNGTMPAIYSNLLHNLDEFVAKDQQLTTPHHKPGTIPSSLL 123
Query: 122 SGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 176
SG+LSMALCYIQR FRSG +HPQPR GS DGPEQYVAIMNAIFSAQRS+VP+DSC+
Sbjct: 124 SGALSMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCF 183
Query: 177 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 236
+G+ NSAFLQQASYITGG++++P Q++GLFQYL T+F TDLHSR FL+LPK +GVDFRAS
Sbjct: 184 IGSNNSAFLQQASYITGGIYYRPPQMEGLFQYLSTVFATDLHSREFLRLPKSLGVDFRAS 243
Query: 237 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTC----------------------------- 267
CFCHK TIDMGY+CSVCLSI+C+H KCSTC
Sbjct: 244 CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCSFTIYDASNECKCSLFADCSNQFNLAEIF 303
Query: 268 ---------------GSVFGQAQTQSDEPSATNRKRK 289
SVFG QTQS+ S NRKRK
Sbjct: 304 PLSAVFFNFFYSFIISSVFG--QTQSEAASEENRKRK 338
>gi|356509424|ref|XP_003523449.1| PREDICTED: general transcription factor IIH subunit 3-like [Glycine
max]
Length = 294
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/296 (68%), Positives = 234/296 (79%), Gaps = 10/296 (3%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SAPSKLY+DDVSL+VV LDTNPFFWS+ F++FL+ VLAFLN IL L QLNQV+VI
Sbjct: 1 MPSAPSKLYADDVSLLVVTLDTNPFFWSTFPFPFAEFLSQVLAFLNTILLLGQLNQVIVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ--EPEGRIAC 118
ATG NSC YVYDS+S N G MP+L + LL NL+EF+ +D QL G +
Sbjct: 61 ATGCNSCGYVYDSTSDKNHGSTTGTMPALYSNLLHNLDEFLARDRQLDADASHAPGIVPS 120
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPID 173
SLLSGSLSMALCYIQR FRSG + PQPR G+ DGPEQYVAIMNAIFSAQ S VPID
Sbjct: 121 SLLSGSLSMALCYIQRAFRSGPMPPQPRILCLQGAADGPEQYVAIMNAIFSAQHSTVPID 180
Query: 174 SCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDF 233
SCY+G+ NSAFLQQASYITGG+++KP QLDGL+QYL T+F TDLHSR FL+LPK VGVDF
Sbjct: 181 SCYIGSNNSAFLQQASYITGGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDF 240
Query: 234 RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 289
RASCFCHK TIDMGY+CSVCLSI+C+H KCSTCGSVFGQAQ + SA +R+RK
Sbjct: 241 RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQL---DASAADRQRK 293
>gi|363806998|ref|NP_001242062.1| uncharacterized protein LOC100776751 [Glycine max]
gi|255647869|gb|ACU24393.1| unknown [Glycine max]
Length = 294
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/296 (67%), Positives = 233/296 (78%), Gaps = 10/296 (3%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLY+DDVSL+VV LDTNPFFWS+ F++FL+ VLAFLN+IL L QLNQV+VI
Sbjct: 1 MPSASSKLYADDVSLLVVTLDTNPFFWSTFPFPFAEFLSQVLAFLNSILLLGQLNQVIVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE--GRIAC 118
ATG NSC Y+YDS+S N G MP+L + LL NL+EF+ +D QL G +
Sbjct: 61 ATGCNSCGYIYDSTSDKNHGSTTGTMPALYSNLLHNLDEFLARDRQLDADAAHAPGTVPS 120
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPID 173
SLLSGSLSMALCYIQR FRSG + PQPR G DGPEQYVAIMNAIFSAQ S VPID
Sbjct: 121 SLLSGSLSMALCYIQRAFRSGPMPPQPRILCLRGVADGPEQYVAIMNAIFSAQHSTVPID 180
Query: 174 SCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDF 233
SCY+G+ NSAFLQQASYITGG+++KP QLDGL+QYL T+F TDL+SR FL+LPK VGVDF
Sbjct: 181 SCYIGSNNSAFLQQASYITGGIYYKPPQLDGLYQYLSTVFATDLYSRAFLRLPKSVGVDF 240
Query: 234 RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 289
RASCFCHK TIDMGY+CSVCLSI+C+H KCSTCGSVFGQAQ + SA +R+RK
Sbjct: 241 RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQL---DASAADRQRK 293
>gi|294464556|gb|ADE77788.1| unknown [Picea sitchensis]
Length = 306
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/305 (61%), Positives = 227/305 (74%), Gaps = 23/305 (7%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSS-------SSLSFSQFLTHVLAFLNAILTLNQ 53
MASA S DDVSLVVVLLDTNPFFW+S SSL+FSQFL HVLAF N++L L+Q
Sbjct: 6 MASAGSNPPQDDVSLVVVLLDTNPFFWASATSSGQASSLTFSQFLEHVLAFFNSLLLLHQ 65
Query: 54 LNQVVVIATGYNSCDYVYDSSSTGNQ------SVGNGRMPSLCATLLQNLEEFMNKDEQL 107
+NQ+VVI TG NSC+++YDSS+T ++ + + + ++Q LE+F+ +D+ L
Sbjct: 66 MNQLVVIGTGTNSCEFIYDSSTTNSEYKKSKDTKCSQEFLTPSTIIVQQLEDFVRRDQAL 125
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAI 162
+ SLLSGSLSMALCYIQR+ R G HPQPR GSPDGP+QYVAIMNAI
Sbjct: 126 NTNNNATKNIHSLLSGSLSMALCYIQRIIRGGPSHPQPRILCLQGSPDGPQQYVAIMNAI 185
Query: 163 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 222
FSAQRSMVP+DSC +G+Q+SAFLQQAS+ITGG++ KPQQL+GLFQ+L +F TDLHSR F
Sbjct: 186 FSAQRSMVPVDSCIVGSQHSAFLQQASHITGGIYLKPQQLEGLFQFLAMVFATDLHSRRF 245
Query: 223 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPS 282
LQLP+P GVDFRASCFCHK TIDMGY+CSVCLSI+C+H KKCSTC S F Q PS
Sbjct: 246 LQLPRPTGVDFRASCFCHKKTIDMGYVCSVCLSIFCEHSKKCSTCESTFNQ-----KPPS 300
Query: 283 ATNRK 287
RK
Sbjct: 301 GQKRK 305
>gi|357146071|ref|XP_003573866.1| PREDICTED: general transcription factor IIH subunit 3-like
[Brachypodium distachyon]
Length = 290
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 182/283 (64%), Positives = 218/283 (77%), Gaps = 15/283 (5%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLYSDDVSLVVV++DTNPFFW+ ++L F+ F H++ F+N++L LN LNQVVVI
Sbjct: 1 MTSAHSKLYSDDVSLVVVIVDTNPFFWAGAALPFADFFGHLIHFVNSLLLLNHLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQ---NLEEFMNKD--EQLGKQEPEGR 115
A G +SC YV+DS GN + P + AT + +EEF+ +D + G G
Sbjct: 61 AAGVSSCAYVFDS---GNAAASGS--PDVAATFAKASRKVEEFVKQDARDTAGNGTVAGG 115
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMV 170
A SL SG+LS+ALCYIQRVFRSG HPQPR GSPDGPEQYVA+MN+IFSAQRSMV
Sbjct: 116 GAASLFSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMV 175
Query: 171 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 230
PIDSC +G Q+SAFLQQASYITGGV+ KPQ+L GLFQYL +F +DLHSR FL+LPK +G
Sbjct: 176 PIDSCIVGTQDSAFLQQASYITGGVYLKPQELSGLFQYLAAVFASDLHSRAFLRLPKTLG 235
Query: 231 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQ 273
VDFRASCFCHK TIDMGY+CSVCLSI+CK+ KKCSTCGS F +
Sbjct: 236 VDFRASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFSR 278
>gi|326513394|dbj|BAK06937.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 292
Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 176/280 (62%), Positives = 216/280 (77%), Gaps = 9/280 (3%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLYSDDVSLVVV++DTNPFFW+ ++L F+ FL+H++ F+N++L L+ LN VV+I
Sbjct: 1 MTSAHSKLYSDDVSLVVVVVDTNPFFWAGAALPFADFLSHLIHFVNSLLLLSNLNHVVII 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKD--EQLGKQEPEGRIAC 118
A G +SC YV+DS + G + G + + LEE + +D E +G A
Sbjct: 61 AAGVSSCAYVFDSGNAG--ASGTADVAETLGKASRKLEELIKQDARETVGNGTVADGGAA 118
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPID 173
SL SG+LS+ALCYIQR+FRSG HPQPR GSPDGPEQYVA+MN+IFSAQRSMVPID
Sbjct: 119 SLFSGALSLALCYIQRIFRSGSRHPQPRILCVQGSPDGPEQYVAVMNSIFSAQRSMVPID 178
Query: 174 SCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDF 233
+C +G Q+SAFLQQASYITGGV+ KPQ+L GLFQYL +F TDLHSR FL+LPK +GVDF
Sbjct: 179 TCIVGTQDSAFLQQASYITGGVYMKPQELSGLFQYLAAVFATDLHSRTFLRLPKTLGVDF 238
Query: 234 RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQ 273
RASCFCHK TIDMGY+CSVCLSI+CK+ KKCSTCGS F +
Sbjct: 239 RASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFSR 278
>gi|212722318|ref|NP_001131186.1| uncharacterized protein LOC100192494 [Zea mays]
gi|194688300|gb|ACF78234.1| unknown [Zea mays]
gi|194690816|gb|ACF79492.1| unknown [Zea mays]
gi|224028537|gb|ACN33344.1| unknown [Zea mays]
gi|413926714|gb|AFW66646.1| hypothetical protein ZEAMMB73_940692 [Zea mays]
Length = 291
Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 176/281 (62%), Positives = 215/281 (76%), Gaps = 9/281 (3%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLYSDDVSLVVV++DTNPFFW++++L F+ F H++ F+N++L LN LN+VVVI
Sbjct: 1 MTSAHSKLYSDDVSLVVVVVDTNPFFWAAAALPFADFFAHLIHFVNSLLLLNHLNRVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL--GKQEPEGRIAC 118
A G +SC Y+ DSS G + + EEF+ +D + G A
Sbjct: 61 AAGVSSCAYILDSSDASPS--GGVAVSDTFDKASRKAEEFIAQDARATAGNGSVASANAA 118
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPID 173
SLLSG+LS++LCYIQR+FRSG HPQPR GSPDGPEQYVA+MN+IFSAQRSMVPID
Sbjct: 119 SLLSGALSISLCYIQRIFRSGSRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPID 178
Query: 174 SCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDF 233
SC +G Q+SAFLQQASYITGGV+ KPQ+L+GLFQYL +F TDLHSR FL+LPK +GVDF
Sbjct: 179 SCIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRAFLRLPKTLGVDF 238
Query: 234 RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQA 274
RASCFCHK TIDMGY+CS+CLSI+CK+ KKCSTCGS F +A
Sbjct: 239 RASCFCHKKTIDMGYVCSICLSIFCKNQKKCSTCGSEFSRA 279
>gi|223946567|gb|ACN27367.1| unknown [Zea mays]
gi|413926715|gb|AFW66647.1| hypothetical protein ZEAMMB73_940692 [Zea mays]
Length = 294
Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 175/284 (61%), Positives = 214/284 (75%), Gaps = 12/284 (4%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLYSDDVSLVVV++DTNPFFW++++L F+ F H++ F+N++L LN LN+VVVI
Sbjct: 1 MTSAHSKLYSDDVSLVVVVVDTNPFFWAAAALPFADFFAHLIHFVNSLLLLNHLNRVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL--GKQEPEGRIAC 118
A G +SC Y+ DSS G + + EEF+ +D + G A
Sbjct: 61 AAGVSSCAYILDSSDASPS--GGVAVSDTFDKASRKAEEFIAQDARATAGNGSVASANAA 118
Query: 119 SLLSGSLSMALCY---IQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMV 170
SLLSG+LS++LC IQR+FRSG HPQPR GSPDGPEQYVA+MN+IFSAQRSMV
Sbjct: 119 SLLSGALSISLCCYLDIQRIFRSGSRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMV 178
Query: 171 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 230
PIDSC +G Q+SAFLQQASYITGGV+ KPQ+L+GLFQYL +F TDLHSR FL+LPK +G
Sbjct: 179 PIDSCIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRAFLRLPKTLG 238
Query: 231 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQA 274
VDFRASCFCHK TIDMGY+CS+CLSI+CK+ KKCSTCGS F +A
Sbjct: 239 VDFRASCFCHKKTIDMGYVCSICLSIFCKNQKKCSTCGSEFSRA 282
>gi|115443937|ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group]
gi|41053068|dbj|BAD08012.1| putative TFIIH basal transcription factor complex p34 subunit
[Oryza sativa Japonica Group]
gi|113535279|dbj|BAF07662.1| Os02g0125800 [Oryza sativa Japonica Group]
gi|215768495|dbj|BAH00724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 289
Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 172/279 (61%), Positives = 214/279 (76%), Gaps = 13/279 (4%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
A SKLYSDDVSL VV++DTNP FW++++L F+ F H++ ++N++L LN LN VVVIA G
Sbjct: 2 ASSKLYSDDVSLAVVVVDTNPLFWATAALPFADFFAHLIHYVNSLLLLNHLNHVVVIAAG 61
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA----CS 119
+SC Y++DSS + + + A + ++EF+ +D + G +A S
Sbjct: 62 LSSCTYIFDSSDASASGAAD--VAATFAKASRKMDEFIAEDAR--ATSSNGSVADGNAAS 117
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDS 174
LLSG+LS+ALCYIQRVFRSG HPQPR GSPDGPEQYVA+MN+IFSAQRSMVPIDS
Sbjct: 118 LLSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDS 177
Query: 175 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 234
C +G Q+SAFLQQASYITGGV+ KPQ+L+GLFQYL +F TDLHSR FL+LPK +GVDFR
Sbjct: 178 CIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFR 237
Query: 235 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQ 273
ASCFCHK TIDMGY+CSVCLSI+CK+ KKCSTCGS F +
Sbjct: 238 ASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNR 276
>gi|168000809|ref|XP_001753108.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695807|gb|EDQ82149.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 257
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 139/258 (53%), Positives = 188/258 (72%), Gaps = 18/258 (6%)
Query: 44 FLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGN------QSVGNGRMP-SLCATLLQN 96
F+N IL LN N++V+IATG ++C ++YDS++T S N + S + ++
Sbjct: 2 FVNGILLLNHTNRIVIIATGSSTCAFLYDSTATDGINGSSVTSKANKKTQVSRTELITKS 61
Query: 97 LEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDG 151
++EF++K+E+ K+ + I S +SGSLSMALCYIQRV R L HPQ R GSPD
Sbjct: 62 MQEFVSKEEEASKESSQ--IQYSNISGSLSMALCYIQRVLRGPLPHPQARILCLQGSPDA 119
Query: 152 PEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 211
P QY+++MN+IFSAQR+ V ID+C +G+Q+SAFLQQA++ITGG++ KP Q DGLF+YL+
Sbjct: 120 PYQYISVMNSIFSAQRNGVVIDACVVGSQHSAFLQQATHITGGIYMKPPQPDGLFEYLMM 179
Query: 212 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+F TDL SR FLQLP+PVGVDFRASCFCHK TIDMG++CSVCLSI+CKH + CSTCG+ F
Sbjct: 180 VFTTDLFSRQFLQLPRPVGVDFRASCFCHKKTIDMGFVCSVCLSIFCKHHQTCSTCGATF 239
Query: 272 GQAQTQSDEPSATNRKRK 289
++S+ + T KRK
Sbjct: 240 ----SRSNSTTVTGMKRK 253
>gi|6714290|gb|AAF25986.1|AC013354_5 F15H18.15 [Arabidopsis thaliana]
Length = 590
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 167/312 (53%), Positives = 205/312 (65%), Gaps = 58/312 (18%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHV--------LAFLNAILTLN 52
M + SK YSDDVSL+V+LLDTNP FWS++S++FSQFL+HV LAFLNA+L LN
Sbjct: 1 MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVSVSNESIVLAFLNAVLGLN 60
Query: 53 QLNQVVVIATGYNSCDYVYDSSSTGN----QSVGNGRMPSLCATLLQNLEEFMNKDEQLG 108
QLNQVVVIATGY+SCDY+YDSS T N +S G G MP++ +LL+ LEEF+ KDE+L
Sbjct: 61 QLNQVVVIATGYSSCDYIYDSSLTSNHGNFESNGTG-MPAIFGSLLKKLEEFVTKDEELS 119
Query: 109 KQE-PEGRI-ACSLLSGSLSMALCYIQRVFR--------SGLLHPQPRGSPDGPEQYVAI 158
K+E E RI +C L G+ +C+ F SGL+ +YVA+
Sbjct: 120 KEEVSEDRIPSCLLWPGT----VCFFLHFFSTCKILSCLSGLIKRFCHSF-----RYVAV 170
Query: 159 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL-LTIFGTDL 217
MN+IFSAQR M + Y A NS GLF + TIF TDL
Sbjct: 171 MNSIFSAQRLM---RTQYSMAANS---------------------GLFCFAQKTIFATDL 206
Query: 218 HSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQ 277
HSR F+QLPKP+GVDFRASCFCHK TIDMGYICSVCLSI+C+H KKCSTCGSVFGQ++
Sbjct: 207 HSRGFVQLPKPIGVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD 266
Query: 278 SDEPSATNRKRK 289
D SA+++KRK
Sbjct: 267 -DASSASDKKRK 277
>gi|218189967|gb|EEC72394.1| hypothetical protein OsI_05675 [Oryza sativa Indica Group]
gi|222622090|gb|EEE56222.1| hypothetical protein OsJ_05207 [Oryza sativa Japonica Group]
Length = 261
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/274 (55%), Positives = 191/274 (69%), Gaps = 31/274 (11%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
A SKLYSDDVSL VV++DTNP FW++++L F+ F H++ ++N++L LN LN VVVIA G
Sbjct: 2 ASSKLYSDDVSLAVVVVDTNPLFWATAALPFADFFAHLIHYVNSLLLLNHLNHVVVIAAG 61
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA----CS 119
+SC Y++DSS + + + A + ++EF+ +D + G +A S
Sbjct: 62 LSSCTYIFDSSDASASGAAD--VAATFAKASRKMDEFIAEDAR--ATSSNGSVADGNAAS 117
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 179
LLSG+LS+ALCYIQRVFRSG HPQPR VPIDSC +G
Sbjct: 118 LLSGALSLALCYIQRVFRSGTRHPQPR-----------------------VPIDSCIVGT 154
Query: 180 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 239
Q+SAFLQQASYITGGV+ KPQ+L+GLFQYL +F TDLHSR FL+LPK +GVDFRASCFC
Sbjct: 155 QDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFRASCFC 214
Query: 240 HKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQ 273
HK TIDMGY+CSVCLSI+CK+ KKCSTCGS F +
Sbjct: 215 HKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNR 248
>gi|449527735|ref|XP_004170865.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
sativus]
Length = 187
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/177 (74%), Positives = 150/177 (84%), Gaps = 5/177 (2%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MASAPSKLY+DDVSL+VVLLDTNPFFWS+S+L FS+FL+HVLAFLN+IL LNQLN+VVVI
Sbjct: 1 MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
TGY SC Y+Y+SSS N + +GRMP+LC LL+NLEEF+ DEQ K++P+G SL
Sbjct: 61 GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPI 172
LSGSLSMALCYIQ+VFRSG LHPQPR GSPDGPEQYVAIMNAIFSAQRSMV I
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVCI 177
>gi|384252816|gb|EIE26291.1| transcription factor Tfb4 [Coccomyxa subellipsoidea C-169]
Length = 305
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 135/307 (43%), Positives = 186/307 (60%), Gaps = 32/307 (10%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS----------SSLSFSQFLTHVLAFLNAILTLNQ 53
APS DD L+VV+L+T+ WS+ +LS + L VL FLN L LN+
Sbjct: 2 APSD-EDDDSCLLVVVLETHEDLWSALADESESPVIGNLSLTTLLQQVLVFLNTFLALNE 60
Query: 54 LNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-- 111
N++VVIA + + +Y S S + G P A EE + K L +++
Sbjct: 61 ANELVVIAACGDQSEVLYTSPSVHRERQG----PKHGAVTGNASEEVLKKLHALLQEQAA 116
Query: 112 -PEGRIA-CSLLSGSLSMALCYIQRVFRSGL----LHPQPR-----GSPDGPEQYVAIMN 160
P G A ++L+G+LS ALC I + + QPR GSPD EQY+++MN
Sbjct: 117 LPVGDHARPAVLAGALSRALCLINKAQLASAGGSRTRKQPRLLCLKGSPDATEQYISVMN 176
Query: 161 AIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSR 220
AIF+AQR V ID+C LGA +SAFLQQA+++T G++ +P+ D L QYLLTIF D SR
Sbjct: 177 AIFAAQRCEVVIDACMLGASDSAFLQQAAHLTNGIYLRPKHKDALLQYLLTIFCGDAFSR 236
Query: 221 NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDE 280
+FLQLP+P+GVDFRA+CFCH+ ID+GY+CSVCLSI+C+ + +CSTCG+ F + +
Sbjct: 237 SFLQLPRPIGVDFRAACFCHRRAIDLGYVCSVCLSIFCESITECSTCGTTF---KVVART 293
Query: 281 PSATNRK 287
P AT RK
Sbjct: 294 P-ATKRK 299
>gi|330789994|ref|XP_003283083.1| hypothetical protein DICPUDRAFT_9126 [Dictyostelium purpureum]
gi|325086950|gb|EGC40332.1| hypothetical protein DICPUDRAFT_9126 [Dictyostelium purpureum]
Length = 282
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 168/286 (58%), Gaps = 33/286 (11%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-----------LSFSQFLTHVLAFLNAILTLNQLNQVVV 59
DD SL+V++LD N + W +SS + FS+FL HV+ F+NA L LNQ NQ+ +
Sbjct: 3 DDTSLLVIVLDCNIYSWGTSSPPLINTSKNNYIGFSKFLEHVMVFINAYLMLNQENQIAL 62
Query: 60 IATGYNSCDYVYDSS-----STGNQSVGNGRMPSLCATLLQNLEEF---MNKDEQLGKQE 111
I++ +++ + Q+ N + +L + +L+ L++ +N D+Q
Sbjct: 63 ISSKIGQSSFIFPETVEQLEQEETQTENNIQNITLQSQILKRLQKINIEVNNDQQ----- 117
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRG-----SPDGPEQYVAIMNAIFSAQ 166
I S S +LSMALCYI R+ R + +PR SPD QY+++MN IFSAQ
Sbjct: 118 ---DIINSSFSAALSMALCYINRI-RKESPNLKPRILVFNISPDVSSQYISVMNCIFSAQ 173
Query: 167 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLP 226
+ +P+DSC L +S FLQQAS++T G++ KP + + L QYLLT F D SR L P
Sbjct: 174 KQSIPVDSCILSQTDSTFLQQASHLTNGIYLKPHKQELLSQYLLTTFLLDTQSRKSLAYP 233
Query: 227 KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFG 272
VD+RASCFCHK +D+G++CSVCLSI+C H CSTCG+ F
Sbjct: 234 NLKSVDYRASCFCHKKIVDIGFVCSVCLSIFCNHFSSCSTCGTKFS 279
>gi|449524543|ref|XP_004169281.1| PREDICTED: general transcription factor IIH subunit 3-like, partial
[Cucumis sativus]
Length = 121
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 106/123 (86%), Gaps = 2/123 (1%)
Query: 170 VPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 229
VPIDSCY+G+ NSAFLQQASYITGGV+ KPQQ+DGLFQYL T+FGTDLHSR FLQLPK V
Sbjct: 1 VPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSV 60
Query: 230 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 289
GVDFRASCFCHK TIDMGY+CSVCLSI+CKH KKCSTCGSVFG+ + D S + KRK
Sbjct: 61 GVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELD--SVSKLKRK 118
Query: 290 TTD 292
T +
Sbjct: 119 TPE 121
>gi|145340718|ref|XP_001415467.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575690|gb|ABO93759.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 285
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 160/296 (54%), Gaps = 41/296 (13%)
Query: 10 SDDVSLVVVLLDTNPFFWSSS---------SLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
+DD SL+VVL++TNP +W++S + S L FLN+ LNQ N+ VI
Sbjct: 9 ADDKSLLVVLVETNPRYWAASEGKGDGTAAANGLSSVLEATTVFLNSFFALNQQNRAAVI 68
Query: 61 ATGYNSCDYVYDSS---STGNQSV-GNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
A + C Y+Y S + G+ S G+ + AT P R
Sbjct: 69 AVHDDGCHYLYTSPLELNAGDASASATGKKRTKTAT-------------------PSSRA 109
Query: 117 A-CSLLSGSLSMALCYIQR---VFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQR 167
A S +G+LS+ALCY R + + L +PR S D P Y+++MNAIFSAQR
Sbjct: 110 AMSSPFAGALSLALCYCNRAQTLETAAGLRVRPRILCLQASQDNPTDYISMMNAIFSAQR 169
Query: 168 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
+PID+ LG + FLQQA++IT G + KP GL QYLL+ D+ SR+ L+LP
Sbjct: 170 QSIPIDAFALGEHDLPFLQQAAHITRGAYVKPTHGAGLLQYLLSTAALDMRSRSHLKLPA 229
Query: 228 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSA 283
GVDFRASCFCHK + +G++CSVCLSI+C+ C TCG+ F + PSA
Sbjct: 230 ARGVDFRASCFCHKRPVSVGFVCSVCLSIFCERRSSCDTCGADFAADAQVTSVPSA 285
>gi|328874423|gb|EGG22788.1| general transcription factor IIH [Dictyostelium fasciculatum]
Length = 304
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 165/284 (58%), Gaps = 33/284 (11%)
Query: 11 DDVSLVVVLLDTNPFFWS---------------SSSLSFSQFLTHVLAFLNAILTLNQLN 55
DD SL+V+++D N + W S ++ S F H++ F+NA L LNQ N
Sbjct: 8 DDTSLLVIIVDLNAYSWGKQVELAEQNIDSTSGSRFITLSTFFEHLVIFINAYLLLNQEN 67
Query: 56 QVVVIATGYNSCDYVYDSS--STGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE 113
Q+ VI++ ++Y S+ T ++S+ SL N+ + + ++ L +E
Sbjct: 68 QIAVISSNVGESSFIYPSNHVDTKDKSISFKISQSL-----NNISKHLIEEIHLTSEENS 122
Query: 114 GRIACSLLSGSLSMALCYIQRV------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQR 167
+ S ++S+ALCYI R+ RS +L SPD QY+ +MN IFSAQ+
Sbjct: 123 SSSS---FSAAMSLALCYINRIKKDNSTIRSRIL--VFNISPDVSTQYIPVMNCIFSAQK 177
Query: 168 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
+P+DSC L + +S FLQQAS++T G++ +P + D L QYLL+ F D +SR FL +P
Sbjct: 178 QSIPVDSCILTSTDSTFLQQASHLTNGIYLRPHRQDHLGQYLLSSFLIDSYSRKFLNVPT 237
Query: 228 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
VD+RASCFCHK +D+G++CSVCLSIYCK+ C+TCG+ F
Sbjct: 238 LKTVDYRASCFCHKKIVDIGFVCSVCLSIYCKYSSSCTTCGTKF 281
>gi|348676264|gb|EGZ16082.1| hypothetical protein PHYSODRAFT_508027 [Phytophthora sojae]
Length = 298
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 150/264 (56%), Gaps = 16/264 (6%)
Query: 15 LVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
L+V+++DTNP W ++ Q ++ L F+N+ L L++ N++V+IA
Sbjct: 21 LLVLVIDTNPVHWFAQGGSAADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSA 80
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMA 128
+Y + + + + A ++Q L++ D L +P R A ++ SLS A
Sbjct: 81 MLYPDPEQDDTTGSAEQAARVNAGVMQRLQQL--SDAPLDPAKP-NRTA---IAASLSRA 134
Query: 129 LCYIQRVFRSGL-LHPQ---PRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAF 184
LC+I R L P+ + SPD E Y+AIMN IFSAQ+ V +D+C L ++S+F
Sbjct: 135 LCFINRAINEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILANEHSSF 194
Query: 185 LQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTI 244
+QQA+Y+TGG+++KP GL QYL++I+ D R L+LP VDFRA CFCH+ I
Sbjct: 195 MQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVI 254
Query: 245 DMGYICSVCLSIYCKHLKKCSTCG 268
Y+C VCLS++C+ CSTCG
Sbjct: 255 STAYVCPVCLSLFCEFRPICSTCG 278
>gi|301122235|ref|XP_002908844.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262099606|gb|EEY57658.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 293
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 148/264 (56%), Gaps = 16/264 (6%)
Query: 15 LVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
L+V+++DTNP W ++ Q ++ L F+N+ L L++ N++V+IA
Sbjct: 16 LLVLVIDTNPVHWFTNGGSAADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSA 75
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMA 128
+Y + + + + A +LQ +++ D L P + ++ SLS +
Sbjct: 76 MLYPDPEQDDTTGSAEQAAKVNAGVLQRMQQL--SDAPLDPATPNQ----TAIAASLSRS 129
Query: 129 LCYIQRVFRSGL-LHPQP---RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAF 184
LC+I R L P+ + SPD E Y+AIMN IFSAQ+ V +D+C L ++S+F
Sbjct: 130 LCFINRAINEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILATEHSSF 189
Query: 185 LQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTI 244
+QQA+Y+TGG+++KP GL QYL++I+ D R L+LP VDFRA CFCH+ I
Sbjct: 190 MQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVI 249
Query: 245 DMGYICSVCLSIYCKHLKKCSTCG 268
Y+C VCLS++C+ CSTCG
Sbjct: 250 STAYVCPVCLSLFCEFRPICSTCG 273
>gi|290987006|ref|XP_002676214.1| predicted protein [Naegleria gruberi]
gi|284089815|gb|EFC43470.1| predicted protein [Naegleria gruberi]
Length = 346
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 165/327 (50%), Gaps = 72/327 (22%)
Query: 10 SDDVSLVVVLLDTNPFFW--------------SSSSLSFSQFLTHVLAFLNAILTLNQLN 55
+D++ L+V+LLD NP+ W + S +SFSQF+ +L F+N LT+ +
Sbjct: 11 TDELELLVILLDINPYTWGKRKLDNEQQQSSSAKSLISFSQFINQLLVFINTFLTIQRNK 70
Query: 56 QVVVIATGYNSCDYV-----YDSSSTGNQSVGNGRMPSLCATLLQNL---------EEFM 101
++ VIA+ N+ + + S G + ++ S +T + N+ E+F
Sbjct: 71 KIAVIASSENNKSHFLFPNRFRSKKDGKHNHNQIQVKSTDSTSMLNMMGVKSGDDIEDFF 130
Query: 102 NKD----------------------EQLGKQEPEGRIACSL-----LSGSLSMALCYIQR 134
D E E +G S LSG+LSMALC+I R
Sbjct: 131 LNDIGFESVQNAVLSGLNSEEVTPSEDTEYMEDDGNHTTSTAQGFSLSGALSMALCFINR 190
Query: 135 VFRSGLLHPQPRG------------SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 182
L +P G SPD QY+++MNAIFSA++ + +D+C L +S
Sbjct: 191 -----LEKEKPLGMSLNSRILTFQVSPDISSQYISVMNAIFSAEKMSIMLDACVLSNDDS 245
Query: 183 AFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKN 242
FLQQA ++TGG + KPQ+ +GL QYLLTIF + R+++QLP VDFRASCF +
Sbjct: 246 TFLQQACFLTGGNYLKPQRQEGLIQYLLTIFMLEKSLRSYIQLPVQNTVDFRASCFETRK 305
Query: 243 TIDMGYICSVCLSIYCKHLKKCSTCGS 269
ID GY+C VCLSI+ H CSTC S
Sbjct: 306 PIDDGYVCPVCLSIFSSHKPVCSTCAS 332
>gi|115609530|ref|XP_791329.2| PREDICTED: general transcription factor IIH subunit 3-like
[Strongylocentrotus purpuratus]
Length = 313
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 159/287 (55%), Gaps = 35/287 (12%)
Query: 14 SLVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+LVV+++D NP +W S L+ SQ + V+ F+N+ L +++ N+V VIA+ N
Sbjct: 11 NLVVIVIDVNPVWWGKQSHHKQQKDGLALSQCMDAVVVFINSHLMMDRRNKVAVIASHTN 70
Query: 66 SCDYVY-----------DSSSTGNQSVGNGR---MPSLCATLLQNLEEFMNKDEQLGKQE 111
++Y D ++ +G+ S+ T+++ L+ +++ + G
Sbjct: 71 ESRFLYPKKTSDAFDDGDDQREQDEMSSDGKYEVFASINDTVMEELKNLVDESKSWGLSH 130
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-------GSPDGPEQYVAIMNAIFS 164
+ +LL+GSL+MALCYI RV + + + + + D QY+ MN IF+
Sbjct: 131 TD-----TLLAGSLAMALCYIHRVXKECAVGEKIKSRILVLKAADDSASQYMNFMNVIFT 185
Query: 165 AQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 224
AQ+ +PID+C L ++S+ LQQA ITGG + K GL QYLL ++ R L
Sbjct: 186 AQKQNIPIDACILD-KDSSLLQQACDITGGKYLKLLSTTGLLQYLLWVYLPSPSQRESLV 244
Query: 225 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
LP + VD+RA+CFCH+ ID+GY+CSVCLSI+C + CSTC + F
Sbjct: 245 LPPAIHVDYRAACFCHRILIDVGYVCSVCLSIFCTYSPICSTCHTAF 291
>gi|417398730|gb|JAA46398.1| Putative rna polymer [Desmodus rotundus]
Length = 308
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 163/288 (56%), Gaps = 29/288 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKGSQFTLSKCMDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G+ P LC + LL E + + + + K +
Sbjct: 65 QESRFLYPGRNGRMGDFFGDPGKTPELCPSGSKDGKYELLTAANEVIVDEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAIF 163
+G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ MN IF
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VVKAAEDSALQYMNFMNVIF 182
Query: 164 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 223
+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R L
Sbjct: 183 AAQKQSILIDACVLDS-DSGLLQQACDITGGMYLKVPQVPSLLQYLLWVFLPDQDQRPQL 241
Query: 224 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 242 TLPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|334327155|ref|XP_001375408.2| PREDICTED: general transcription factor IIH subunit 3-like, partial
[Monodelphis domestica]
Length = 308
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 163/291 (56%), Gaps = 36/291 (12%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGYN 65
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 DELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVMGNSHLFMNRSNKLAVIASHIQ 64
Query: 66 SCDYVY---------------DSSSTGNQS-VGNGRMPSLCATLLQNLEEFMNKDEQLGK 109
++Y +S++ N S +G+ L A EE + + K
Sbjct: 65 ESRFLYPGKNWKFGDIFGDPGNSATEYNPSGSKDGKYELLTAANEAITEEI---KDLMTK 121
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMN 160
+ EG+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ MN
Sbjct: 122 SDMEGQHTETLLAGSLAKALCYIHRMSKEVKDNQEMKSRIL--VIKAAEDSALQYMNFMN 179
Query: 161 AIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSR 220
IF+AQ+ + ID+C L A +S LQQA ITGG++ K Q+ L QYLL +F D R
Sbjct: 180 VIFAAQKQNIVIDACVLDA-DSGLLQQACDITGGIYLKVPQMPSLLQYLLWVFLPDQDQR 238
Query: 221 NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 239 SQLNLPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|115655410|ref|XP_001194121.1| PREDICTED: general transcription factor IIH subunit 3-like
[Strongylocentrotus purpuratus]
Length = 391
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 153/284 (53%), Gaps = 31/284 (10%)
Query: 14 SLVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+LVV+++D NP +W S L+ SQ + V+ F+N+ L +++ N+V VIA+ N
Sbjct: 91 NLVVIVIDVNPVWWGKQSHHKQQKDGLALSQCMDAVVVFINSHLMMDRRNKVAVIASHTN 150
Query: 66 SCDYVY-----------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEG 114
++Y D ++ +G+ + +EE N L + P
Sbjct: 151 ESRFLYPKKTSDAFDDGDDQREQDEMSSDGKYEVFASINDTVMEELKN----LVDENPTV 206
Query: 115 RIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-------GSPDGPEQYVAIMNAIFSAQR 167
+LL+GSL+MALCYI RV + + + + + D QY+ MN IF+AQ+
Sbjct: 207 SHTDTLLAGSLAMALCYIHRVEKECAVGEKIKSRILVLKAADDSASQYMNFMNVIFTAQK 266
Query: 168 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
+PID+C L ++S+ LQQA ITGG + K GL QYLL ++ R L LP
Sbjct: 267 QNIPIDACILD-KDSSLLQQACDITGGKYLKLLSTTGLLQYLLWVYLPSPSQRESLVLPP 325
Query: 228 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+ VD+RA+CFCH+ ID+GY+CSVCLSI+C + CSTC + F
Sbjct: 326 AIHVDYRAACFCHRILIDVGYVCSVCLSIFCTYSPICSTCHTAF 369
>gi|328852556|gb|EGG01701.1| hypothetical protein MELLADRAFT_110826 [Melampsora larici-populina
98AG31]
Length = 316
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 159/290 (54%), Gaps = 35/290 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWS------SSSLSF---SQFLTHVLAFLNAILTLNQLNQVVVI 60
+D L++++LD NP WS +SS F + FL VL F N L++ N + +
Sbjct: 5 TDPADLLIIILDLNPSSWSNFKHQSTSSEEFIELTSFLETVLVFSNTHLSIRHENSLAIY 64
Query: 61 ATGYNSCDYVYDSSSTG--NQSVGNGRMPSLCAT--LLQN-----LEEFMN-KDEQLGKQ 110
A+ + + +Y + G N SV R + T +L + +++ M D+ L
Sbjct: 65 ASMIGTSELLYSTLENGVKNDSVSGHRDSNTYQTFRVLDDCVSDCVKKLMKVNDQDLKSG 124
Query: 111 EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ----PRG-----SPDGPEQYVAIMNA 161
+P G + +L+ ALC+I RV + P+ PR SPD P QY+ +MN
Sbjct: 125 QPTGTV------NALAKALCHINRVTKEET-RPKDSLKPRILIISISPDSPGQYIPMMNC 177
Query: 162 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 221
IFSAQ+S +PID C + +++ FLQQASY+T G++++ ++ L QYL IF + R
Sbjct: 178 IFSAQKSCIPIDVCKITGEDAVFLQQASYLTNGIYYRLEKPKALIQYLTMIFLPGVSIRK 237
Query: 222 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
L LP+ VD RA+CFCH+ ID+GY+CSVCLSI+C + CSTC + F
Sbjct: 238 SLNLPQQEEVDLRAACFCHRKIIDLGYVCSVCLSIFCTPIPVCSTCRTKF 287
>gi|395513842|ref|XP_003761131.1| PREDICTED: general transcription factor IIH subunit 3 [Sarcophilus
harrisii]
Length = 316
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 162/297 (54%), Gaps = 42/297 (14%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
L D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 9 LADDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVMGNSHLFMNRSNKLAVIAS 68
Query: 63 GYNSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNK 103
++Y D + +G++ + + + + +++ M K
Sbjct: 69 HIQESRFLYPGKNWKFGDFFGDPGCSSADYNPSGSKDGKYELLTAANEVITEEIKDLMTK 128
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQ 154
+ EG+ +LL+GSL+ ALCYI R+ +S +L + + D Q
Sbjct: 129 SDM------EGQRTETLLAGSLAKALCYIHRMGKEVKDNQEMKSRIL--VIKAAEDSALQ 180
Query: 155 YVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFG 214
Y+ MN IF+AQ+ + ID+C L +S LQQA ITGG++ K Q+ L QYLL +F
Sbjct: 181 YMNFMNVIFAAQKQNIVIDACVLDT-DSGLLQQACDITGGIYLKVPQMLSLLQYLLWVFL 239
Query: 215 TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
D R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 240 PDQDQRSQLNLPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 296
>gi|149633387|ref|XP_001507590.1| PREDICTED: general transcription factor IIH subunit 3-like
[Ornithorhynchus anatinus]
Length = 311
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 164/292 (56%), Gaps = 32/292 (10%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
L ++++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 LSDEELNLLVIVVDTNPIWWGKQALRESQFTLSKCIDAVMVMGNSHLLMNRTNKLAVIAS 64
Query: 63 GYNSCDYVY------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKD--EQLG 108
++Y D+ S+ + +G LL E + ++ + +
Sbjct: 65 HIQESRFLYPGKNWKLGEFSGDACSSPTEYNPSGSKDGK-YELLTTANEVITEEIKDLMT 123
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIM 159
K + +G+ +LL+GSL+ ALCYI R+ RS +L + S D QY+ M
Sbjct: 124 KSDMKGQHTETLLAGSLAKALCYIHRMNKEVKDSQEMRSRIL--VIKASEDSALQYMNFM 181
Query: 160 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 219
N IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 182 NVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGIYLKVPQMPSLLQYLLWVFLPDQDQ 240
Query: 220 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 241 RSQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 292
>gi|440898315|gb|ELR49840.1| General transcription factor IIH subunit 3, partial [Bos grunniens
mutus]
Length = 305
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 161/292 (55%), Gaps = 36/292 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 1 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 60
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCATLLQNLEEFMNKDEQLG 108
++Y + GN S +G+ L A EE + +
Sbjct: 61 QESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDGKYELLTAANEVIAEEI---KDLMT 117
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIM 159
K + EG+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ M
Sbjct: 118 KSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYMNFM 175
Query: 160 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 219
N IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 176 NVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQ 234
Query: 220 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 235 RSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 286
>gi|118601766|ref|NP_001073057.1| general transcription factor IIH subunit 3 [Bos taurus]
gi|426247186|ref|XP_004017367.1| PREDICTED: general transcription factor IIH subunit 3 [Ovis aries]
gi|122131719|sp|Q05B56.1|TF2H3_BOVIN RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=General transcription factor IIH polypeptide 3
gi|115545470|gb|AAI22793.1| General transcription factor IIH, polypeptide 3, 34kDa [Bos taurus]
gi|296478493|tpg|DAA20608.1| TPA: general transcription factor IIH subunit 3 [Bos taurus]
Length = 309
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 161/292 (55%), Gaps = 36/292 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCATLLQNLEEFMNKDEQLG 108
++Y + GN S +G+ L A EE + +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDGKYELLTAANEVIAEEI---KDLMT 121
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIM 159
K + EG+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ M
Sbjct: 122 KSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYMNFM 179
Query: 160 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 219
N IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 180 NVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQ 238
Query: 220 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 239 RSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|66730451|ref|NP_001019407.1| general transcription factor IIH subunit 3 [Rattus norvegicus]
gi|81888006|sp|Q561R7.1|TF2H3_RAT RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=General transcription factor IIH polypeptide 3
gi|62531219|gb|AAH93380.1| General transcription factor IIH, polypeptide 3 [Rattus norvegicus]
gi|149063248|gb|EDM13571.1| general transcription factor IIH, polypeptide 3 [Rattus norvegicus]
Length = 309
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 160/295 (54%), Gaps = 42/295 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ NA L +N+ NQ+ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANAHLFMNRSNQLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
++Y D + +G++ + + + + +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNALPDCNPSGSKDGKYELLTAANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYV 156
G+ +LL+GSL+ ALCYI R +S +L + + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRASKAVKDNQEMKSRIL--VIKAAEDSALQYM 176
Query: 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 NFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPD 235
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 QDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|194042856|ref|XP_001927574.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Sus scrofa]
Length = 309
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 162/292 (55%), Gaps = 36/292 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY---------------DSSSTGNQS-VGNGRMPSLCATLLQNLEEFMNKDEQLG 108
++Y + SS N S +G+ L A EE + +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFNPSGSKDGKYELLTAANDVIAEEI---KDLMT 121
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIM 159
K + EG+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ M
Sbjct: 122 KSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYMNFM 179
Query: 160 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 219
N IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 180 NVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQ 238
Query: 220 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 239 RSQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|395846791|ref|XP_003796077.1| PREDICTED: general transcription factor IIH subunit 3 [Otolemur
garnettii]
Length = 309
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 163/295 (55%), Gaps = 42/295 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVMGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
+ ++Y + + TG++ + + +++ +++ M K +
Sbjct: 65 HESRFLYPGKNGRLGDFFGDPGNPPPEFNPTGSKDGKYELLTAANEVIVEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYV 156
G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYM 176
Query: 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 NFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPD 235
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 QDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|348554273|ref|XP_003462950.1| PREDICTED: general transcription factor IIH subunit 3-like [Cavia
porcellus]
Length = 309
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 161/295 (54%), Gaps = 42/295 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + VL N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVLVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGN-------QSVGNGRMPSLCA---TLLQNLEEFMNKDE 105
+ ++Y + GN +G+ L A +++ +++ M K +
Sbjct: 65 HESRFLYPGKNGRLGDFFGDAGNPPPEYNPSGSKDGKYELLTAANEVIVEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYV 156
G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VLKAAEDSALQYM 176
Query: 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
MN IF+AQ+ + ID+C L +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 NFMNVIFAAQKQNILIDACVLDT-DSGLLQQACDITGGLYLKVPQMTSLLQYLLWVFLPD 235
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 QDQRAQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|301754663|ref|XP_002913183.1| PREDICTED: general transcription factor IIH subunit 3-like
[Ailuropoda melanoleuca]
Length = 309
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 162/295 (54%), Gaps = 42/295 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCAT---LLQNLEEFMNKDE 105
++Y + GN S +G+ A + + +++ M K E
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFSPSGSKDGKYELFTAANEIIAEEIKDLMTKSE 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYV 156
G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYM 176
Query: 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
+MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 NLMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPD 235
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 QDQRSQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|308798981|ref|XP_003074271.1| basal transcription factor complex subunit-related (ISS)
[Ostreococcus tauri]
gi|116000442|emb|CAL50122.1| basal transcription factor complex subunit-related (ISS)
[Ostreococcus tauri]
Length = 319
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 157/305 (51%), Gaps = 45/305 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSS---------SLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
+DD SL++VL++TNP W +S S S L + FLNA LNQ N+ VV+
Sbjct: 10 TDDRSLLIVLVETNPRTWETSEGKGEGTPASRGLSSVLGATITFLNAFFALNQQNRAVVV 69
Query: 61 ATGYNSCDYVY------DSSSTGNQS--------VGNGRMP---SLCATLLQNLEEFMNK 103
A + C Y+Y ++ G+++ VG G P T+L+ L E +N
Sbjct: 70 AVHGDGCHYLYTSPLGVETDEDGDEAEDARWANKVG-GLDPLQSEAGPTILRRLGE-LNA 127
Query: 104 DE--------QLGKQEPEGRIACSLLSGSLSMALCYIQR---VFRSGLLHPQPR-----G 147
E + K + + A S +G+LS+ALCY R + + L +PR
Sbjct: 128 AETGSSATGAKRDKADSDDGPATSPFAGALSLALCYCNRAQALENAAGLRSKPRILCLQA 187
Query: 148 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQ 207
S D P Y+ +MNAIFSAQR +P+D+ LG +S F+QQA++IT G + KP DGL Q
Sbjct: 188 SQDNPTDYIPMMNAIFSAQRQSIPVDAFALGEHDSPFMQQAAHITRGAYVKPTLGDGLLQ 247
Query: 208 YLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDM-GYICSVCLSIYCKHLKKCST 266
YLL+ DL SR FL+LP+ FRAS ++CSVCLS++C C T
Sbjct: 248 YLLSTAVMDLRSRAFLKLPQAKASTFRASVLLPTTARQASAFVCSVCLSVFCDGRPACDT 307
Query: 267 CGSVF 271
CG+ F
Sbjct: 308 CGTTF 312
>gi|114647703|ref|XP_001170519.1| PREDICTED: general transcription factor IIH subunit 3 isoform 3
[Pan troglodytes]
gi|397481834|ref|XP_003812142.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Pan paniscus]
gi|410221584|gb|JAA08011.1| general transcription factor IIH, polypeptide 3, 34kDa [Pan
troglodytes]
gi|410252228|gb|JAA14081.1| general transcription factor IIH, polypeptide 3, 34kDa [Pan
troglodytes]
gi|410294034|gb|JAA25617.1| general transcription factor IIH, polypeptide 3, 34kDa [Pan
troglodytes]
gi|410334639|gb|JAA36266.1| general transcription factor IIH, polypeptide 3, 34kDa [Pan
troglodytes]
Length = 308
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 163/288 (56%), Gaps = 29/288 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G +P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNLPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAIF 163
+G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ MN IF
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRIL--VIKAAEDSALQYMNFMNVIF 182
Query: 164 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 223
+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L
Sbjct: 183 AAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQL 241
Query: 224 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 242 ILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|190358598|ref|NP_001121894.1| uncharacterized protein LOC100151595 [Danio rerio]
Length = 296
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 155/279 (55%), Gaps = 24/279 (8%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
DD++++V++LD NP +W + + S L ++ NA L +++ N++ VI + Y+
Sbjct: 5 DDINILVIVLDVNPVWWGQQAQREPKFTLSACLDSLMVLANAHLVMSRTNKLAVITSLYH 64
Query: 66 SCDYVYDSSS--TGNQSVGN--GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLL 121
++Y S +G + N G+ L T EE N E + E G +LL
Sbjct: 65 ESHFLYPSKQWRSGEEISANPDGKYELLSVTNDLFAEEIRNLME---RAEVSGSQTETLL 121
Query: 122 SGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPI 172
+ SL+ ALCYI R+ +S +L + + D QY+ MN IF+AQ+ + I
Sbjct: 122 AVSLARALCYINRISKDVQAGQEVKSRIL--VIKAAEDSTSQYMNFMNVIFAAQKKNILI 179
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 232
D+C L + +S LQQA ITGG++ + Q L QYLL +F D R+ L LP PV VD
Sbjct: 180 DACVLDS-DSGLLQQACDITGGLYLRVPQKVALTQYLLWVFLPDAEQRSQLLLPPPVHVD 238
Query: 233 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 239 YRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 277
>gi|291414274|ref|XP_002723381.1| PREDICTED: general transcription factor IIH, polypeptide 3, 34kDa
[Oryctolagus cuniculus]
Length = 309
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 162/295 (54%), Gaps = 42/295 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ V+A+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVVASHI 64
Query: 65 NSCDYVY---------------DSSSTGNQS-VGNGRMPSLCA---TLLQNLEEFMNKDE 105
++Y + SS N S +G+ L A +++ + + M K +
Sbjct: 65 QESRFLYPGKNGRVGDFFGDPGNPSSEFNPSGSKDGKYELLTAANEVIVEEIRDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYV 156
G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYM 176
Query: 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
MN IF+AQ+ + ID+C L +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 NFMNVIFAAQKQNILIDACVLDT-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPD 235
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 QDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCSFSPICTTCETAF 290
>gi|149720731|ref|XP_001498402.1| PREDICTED: general transcription factor IIH subunit 3-like [Equus
caballus]
Length = 309
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 164/295 (55%), Gaps = 42/295 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRCNKLAVIASHI 64
Query: 65 NSCDYVY---------------DSSSTGNQS-VGNGRMPSLCA---TLLQNLEEFMNKDE 105
++Y ++ S N S +G+ L A +++ +++ M K +
Sbjct: 65 QESRFLYPGKHGRLGDFFGDPGNAPSEFNPSGSKDGKYELLTAANEVIVEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYV 156
G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDTALQYM 176
Query: 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 NFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPD 235
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 QDQRSQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|325190435|emb|CCA24938.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 288
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 160/269 (59%), Gaps = 21/269 (7%)
Query: 14 SLVVVLLDTNPFFW----------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
+ +V++LDTNP W S SL F + + VL F+++ L LN+ N+++++A
Sbjct: 7 AFLVLILDTNPSHWWRNVDGMPTDQSDSL-FQRTVKSVLIFVSSYLLLNRSNRLILLAAH 65
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
S +Y + + ++S ++ + +L+NL + + + + + +SG
Sbjct: 66 AGSSVTLYPDALSESESESGDQIGLIRNIVLKNLLALSEQTHDVTSK------STTSISG 119
Query: 124 SLSMALCYIQRVFR-SGLLHPQP---RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 179
S+S LC + RV + + L P+ + SPD PE Y++IMN+IFSAQ+ V ID+C L
Sbjct: 120 SISRGLCCMNRVLKENAQLCPRIFVIQRSPDVPEHYISIMNSIFSAQKKTVAIDACILSE 179
Query: 180 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 239
++S F+QQA+Y+TGG+++KP+ +DGL QYL+T++ D + R L+ P VDFRA CFC
Sbjct: 180 EHSPFMQQATYLTGGIYYKPRVIDGLLQYLITLYLPDPNMRKMLRFPSQESVDFRAMCFC 239
Query: 240 HKNTIDMGYICSVCLSIYCKHLKKCSTCG 268
HK + ++C VCLS++C+ CSTCG
Sbjct: 240 HKKAVSTAFVCPVCLSLFCQFQPICSTCG 268
>gi|335775838|gb|AEH58705.1| general transcription factor IIH subunit-like protein [Equus
caballus]
Length = 302
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 162/290 (55%), Gaps = 39/290 (13%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
D+++L+V+++DTNP +W +L SQ VL N+ L +N+ N++ VIA+ +
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQDAVMVLG--NSHLFMNRCNKLAVIASHIQESRF 62
Query: 70 VY---------------DSSSTGNQS-VGNGRMPSLCA---TLLQNLEEFMNKDEQLGKQ 110
+Y ++ S N S +G+ L A +++ +++ M K + G+
Sbjct: 63 LYPGKHGRLGDFFGDPGNAPSEFNPSGSKDGKYELLTAANEVIVEEIKDLMTKSDIKGQH 122
Query: 111 EPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNA 161
+LL+GSL+ ALCYI R+ +S +L + + D QY+ MN
Sbjct: 123 TE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDTALQYMNFMNV 174
Query: 162 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 221
IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 175 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 233
Query: 222 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 234 QLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 283
>gi|31088894|ref|NP_852075.1| general transcription factor IIH subunit 3 [Mus musculus]
gi|22654149|sp|Q8VD76.1|TF2H3_MOUSE RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=Basic transcription factor 2 34 kDa subunit;
Short=BTF2 p34; AltName: Full=General transcription
factor IIH polypeptide 3; AltName: Full=TFIIH basal
transcription factor complex p34 subunit
gi|17028402|gb|AAH17515.1| General transcription factor IIH, polypeptide 3 [Mus musculus]
gi|74228938|dbj|BAE21939.1| unnamed protein product [Mus musculus]
gi|148687628|gb|EDL19575.1| general transcription factor IIH, polypeptide 3 [Mus musculus]
Length = 309
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 159/295 (53%), Gaps = 42/295 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ NQ+ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANSHLFMNRSNQLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
+Y D + +G++ + + + +++ M K +
Sbjct: 65 QESRLLYPGKNGGLGDFFGDPGNALPDCNPSGSKDGKYELLTVANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYV 156
G+ +LL+GSL+ ALCYI RV +S +L + + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRVNKAVKDNQEMKSRIL--VIKAAEDSALQYM 176
Query: 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 NFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPD 235
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 QDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|344297280|ref|XP_003420327.1| PREDICTED: general transcription factor IIH subunit 3-like
[Loxodonta africana]
Length = 309
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 163/295 (55%), Gaps = 42/295 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY---------------DSSSTGNQS-VGNGRMPSLCA---TLLQNLEEFMNKDE 105
+ ++Y + S N S +G+ L A + + +++ M K +
Sbjct: 65 HESRFLYPGKNGRLGDFFGEASNPPSEFNPSGSKDGKYELLTAANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYV 156
G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+
Sbjct: 125 IKGQHME------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYM 176
Query: 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 NFMNVIFAAQKQSILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPD 235
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 QDQRSQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|432873950|ref|XP_004072398.1| PREDICTED: general transcription factor IIH subunit 3-like [Oryzias
latipes]
Length = 300
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 153/284 (53%), Gaps = 28/284 (9%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
D+V+L+V+++D NP +W + + S+ L V+ N+ + L + N++ VIA+
Sbjct: 4 EDEVNLLVIVVDVNPIWWGQQAQREPEFTLSKCLDGVMVMGNSHMALTRTNKLAVIASHC 63
Query: 65 NSCDYVYDSSSTG--------NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
++Y S S G S +G+ L EE N L K E G
Sbjct: 64 QDSHFLYPSKSLGGGGGAAEDTSSSRDGKYELLAVANSAIAEEIRNV---LSKTEVRGNS 120
Query: 117 ACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQR 167
+LL+GSL+ ALCYI RV +S +L + + D QY+ MN IF+AQ+
Sbjct: 121 TDTLLAGSLAKALCYIYRVSKELDVGQEIKSRIL--VIKAAEDCALQYMNFMNVIFAAQK 178
Query: 168 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
+ ID+C L + +S LQQA ITGG++ K Q L QYLL +F D R+ L LP
Sbjct: 179 QNILIDACVLDS-DSGLLQQACDITGGLYLKIPQKLALTQYLLWVFLPDSEQRSQLVLPP 237
Query: 228 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
P VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 PAHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 281
>gi|1039318|emb|CAA82909.1| basic transcription factor 2, 35 kD subunit [Homo sapiens]
Length = 303
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 161/294 (54%), Gaps = 41/294 (13%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
++Y + + +G++ + S +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVA 157
G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+
Sbjct: 125 KGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYMN 176
Query: 158 IMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDL 217
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 FMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQ 235
Query: 218 HSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 DQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|363739821|ref|XP_001235063.2| PREDICTED: general transcription factor IIH subunit 3 [Gallus
gallus]
Length = 307
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 160/291 (54%), Gaps = 37/291 (12%)
Query: 11 DDVSLVVVLLDTNPFFWS-----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+++SL+V+++DTNP +W + + S+ + + N+ L +++ N++ +IA+
Sbjct: 5 EELSLLVIVIDTNPIWWGKRAQGEAEFTLSKCMDAAMVLGNSHLFMSRTNRLALIASHTQ 64
Query: 66 SCDYVY--------DSSSTGNQSV-------GNGRMPSLCA---TLLQNLEEFMNKDEQL 107
++Y D G SV +G+ L A + + +++ M K + +
Sbjct: 65 ESRFLYPGKRWASADLLGDGGNSVESNCSGSKDGKYELLTAINDAIAEEIKDLMTKTDMM 124
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-------GSPDGPEQYVAIMN 160
G+Q +LL+GSL+ ALCYI ++ + + + + + D QY+ MN
Sbjct: 125 GQQTE------TLLAGSLAKALCYINKISKEVKANQEMKSRILVIKAAEDSALQYMNFMN 178
Query: 161 AIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSR 220
IF+AQ+ + ID+C L + +S LQQA ITGG++ K L L QYLL +F D R
Sbjct: 179 VIFAAQKQSILIDACVLDS-DSGLLQQACDITGGIYLKVPHLPSLLQYLLWVFLPDQEQR 237
Query: 221 NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C CSTC + F
Sbjct: 238 SQLVLPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICSTCETAF 288
>gi|57105536|ref|XP_534644.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Canis lupus familiaris]
Length = 308
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 162/291 (55%), Gaps = 35/291 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV------GNGRMPSLCATLLQNLEEFMNKDEQLGK 109
++Y + GN S +G+ A +EE KD + K
Sbjct: 65 QESRFLYPGKNGKLGDFFGDPGNPSEFSPSGSKDGKYELFTAANEVIVEEI--KDLMI-K 121
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMN 160
+ +G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ MN
Sbjct: 122 SDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYMNFMN 179
Query: 161 AIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSR 220
IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R
Sbjct: 180 VIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQR 238
Query: 221 NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 239 SQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|402888055|ref|XP_003907392.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Papio anubis]
gi|426374588|ref|XP_004054152.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Gorilla gorilla gorilla]
gi|380784389|gb|AFE64070.1| general transcription factor IIH subunit 3 [Macaca mulatta]
gi|383417813|gb|AFH32120.1| general transcription factor IIH subunit 3 [Macaca mulatta]
gi|384946662|gb|AFI36936.1| general transcription factor IIH subunit 3 [Macaca mulatta]
Length = 308
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 162/288 (56%), Gaps = 29/288 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAIF 163
+G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ MN IF
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRIL--VIKAAEDSALQYMNFMNVIF 182
Query: 164 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 223
+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L
Sbjct: 183 AAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQL 241
Query: 224 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 242 ILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|358060458|dbj|GAA93863.1| hypothetical protein E5Q_00509 [Mixia osmundae IAM 14324]
Length = 331
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 150/278 (53%), Gaps = 22/278 (7%)
Query: 15 LVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
L+ +++DTN W S+ LS S+ L +L FLNA L L N+++V G
Sbjct: 10 LLCIIIDTNVLAWHESAQSSESGDRLSLSEALETLLVFLNAHLALRDQNELLVYGAGPGH 69
Query: 67 CDYVYDS------SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ-EPEGRIACS 119
+ +Y S SS + S N R S Q + Q+ ++ EP+ +
Sbjct: 70 SEMIYSSFDDQGESSADHASETNERYASTFPRFRQVDTQVSKAVGQMMRELEPDTDAPPA 129
Query: 120 LLSGSLSMALCYIQRVFRSGLLHP-QPRG-----SPDGPEQYVAIMNAIFSAQRSMVPID 173
++S +L+ LC+I R+ R H +PR S D QY+ +MN IFSAQ++ VPID
Sbjct: 130 IVS-ALARTLCHINRISREETKHTIKPRVLLLSVSHDSSSQYIPLMNCIFSAQKANVPID 188
Query: 174 SCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDF 233
C + ++ FLQQA+Y++ G+++K ++ GL QYL+ F + SR L LP VD
Sbjct: 189 VCKIYGDDAVFLQQAAYLSSGIYYKLEKRAGLLQYLMMTFLPGVTSRKLLNLPSQDAVDL 248
Query: 234 RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
RA+CFCH+ +D+G++CSVCLSI+C C TC + F
Sbjct: 249 RAACFCHQRIVDIGFVCSVCLSIFCTPRPSCLTCRTKF 286
>gi|50540194|ref|NP_001002564.1| general transcription factor IIH, polypeptide 3 [Danio rerio]
gi|49900709|gb|AAH76236.1| General transcription factor IIH, polypeptide 3 [Danio rerio]
Length = 296
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 154/279 (55%), Gaps = 24/279 (8%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
DD++++V++LD NP +W + + S L ++ NA L +++ N++ VI + Y+
Sbjct: 5 DDINILVIVLDVNPVWWGQQAQREPKFTLSACLDSLMVLANAHLVMSRTNKLAVITSLYH 64
Query: 66 SCDYVYDSSS--TGNQSVGN--GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLL 121
++Y S +G + N G+ L T EE N E + E G +LL
Sbjct: 65 ESHFLYPSKQWRSGEEISANPDGKYELLSVTNDLFAEEIRNLME---RAEVSGSQTETLL 121
Query: 122 SGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPI 172
+ SL+ ALCYI R+ +S +L + + D QY+ MN IF+AQ+ + I
Sbjct: 122 AVSLARALCYINRISKDVQAGQEVKSRIL--VIKAAEDSTSQYMNFMNVIFAAQKKNILI 179
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 232
D+C L + +S LQQA ITGG++ + Q L QYLL F D R+ L LP PV VD
Sbjct: 180 DACVLDS-DSGLLQQACDITGGLYLRVPQKVALTQYLLWAFLPDAEQRSQLLLPPPVHVD 238
Query: 233 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 239 YRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 277
>gi|19923732|ref|NP_001507.2| general transcription factor IIH subunit 3 isoform a [Homo sapiens]
gi|50403772|sp|Q13889.2|TF2H3_HUMAN RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=Basic transcription factor 2 34 kDa subunit;
Short=BTF2 p34; AltName: Full=General transcription
factor IIH polypeptide 3; AltName: Full=TFIIH basal
transcription factor complex p34 subunit
gi|23955948|gb|AAN40702.1| general transcription factor IIH, polypeptide 3, 34kDa [Homo
sapiens]
gi|40850955|gb|AAH65250.1| General transcription factor IIH, polypeptide 3, 34kDa [Homo
sapiens]
gi|119618832|gb|EAW98426.1| general transcription factor IIH, polypeptide 3, 34kDa, isoform
CRA_a [Homo sapiens]
gi|189053764|dbj|BAG36016.1| unnamed protein product [Homo sapiens]
gi|208966364|dbj|BAG73196.1| general transcription factor IIH, polypeptide 3, 34kDa [synthetic
construct]
Length = 308
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 162/288 (56%), Gaps = 29/288 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAIF 163
+G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ MN IF
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYMNFMNVIF 182
Query: 164 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 223
+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L
Sbjct: 183 AAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQL 241
Query: 224 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 242 ILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|355564808|gb|EHH21308.1| hypothetical protein EGK_04329, partial [Macaca mulatta]
gi|355786640|gb|EHH66823.1| hypothetical protein EGM_03880, partial [Macaca fascicularis]
Length = 308
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 161/294 (54%), Gaps = 41/294 (13%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
++Y + + +G++ + S +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVA 157
G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+
Sbjct: 125 KGQHTE------TLLAGSLAKALCYIHRMNKEIKDNQEMKSRIL--VIKAAEDSALQYMN 176
Query: 158 IMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDL 217
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 FMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQ 235
Query: 218 HSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 DQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|167773979|gb|ABZ92424.1| general transcription factor IIH, polypeptide 3, 34kDa [synthetic
construct]
Length = 308
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 162/288 (56%), Gaps = 29/288 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALQESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAIF 163
+G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ MN IF
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYMNFMNVIF 182
Query: 164 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 223
+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L
Sbjct: 183 AAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQL 241
Query: 224 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 242 ILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|34783458|gb|AAH39726.1| GTF2H3 protein, partial [Homo sapiens]
gi|34783739|gb|AAH47868.2| GTF2H3 protein, partial [Homo sapiens]
Length = 303
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 162/287 (56%), Gaps = 29/287 (10%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGYN 65
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 1 DELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQ 60
Query: 66 SCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEPE 113
++Y + G+ G P + LL + E + ++ + + K + +
Sbjct: 61 ESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIK 120
Query: 114 GRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAIFS 164
G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ MN IF+
Sbjct: 121 GQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYMNFMNVIFA 178
Query: 165 AQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 224
AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L
Sbjct: 179 AQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLI 237
Query: 225 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 LPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 284
>gi|332254335|ref|XP_003276282.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Nomascus leucogenys]
Length = 308
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 161/294 (54%), Gaps = 41/294 (13%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
++Y + + +G++ + S +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKGDI 124
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVA 157
G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+
Sbjct: 125 KGQHTE------TLLAGSLAKALCYIHRMNKEIKDNQEMKSRIL--VIKAAEDSALQYMN 176
Query: 158 IMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDL 217
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 FMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQ 235
Query: 218 HSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 DQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|354491444|ref|XP_003507865.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
2 [Cricetulus griseus]
gi|344248744|gb|EGW04848.1| General transcription factor IIH subunit 3 [Cricetulus griseus]
Length = 313
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 162/297 (54%), Gaps = 42/297 (14%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
L D+++L+V+++DTNP +W +L SQF + V+ N+ L +++ NQ+ VIA+
Sbjct: 7 LAEDELNLLVIIVDTNPIWWGKQALKGSQFTLSKCMDAVMVLANSHLFMHRSNQLAVIAS 66
Query: 63 GYNSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNK 103
++Y D + +G++ + + + + +++ M K
Sbjct: 67 HIQESRFLYPGKNGRLGDFFGDPGNPFPDCNPSGSKDGKYELLTAANDVIAEEIKDLMTK 126
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQ 154
+ G+ +LL+GSL+ ALCYI R+ +S +L + + D Q
Sbjct: 127 SDIKGQHTE------TLLAGSLAKALCYIHRMNKAVKDNQEMKSRIL--VIKAAEDSALQ 178
Query: 155 YVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFG 214
Y+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F
Sbjct: 179 YMNFMNVIFAAQKQNILIDACILDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFL 237
Query: 215 TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
D R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 PDQDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 294
>gi|354491442|ref|XP_003507864.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
1 [Cricetulus griseus]
Length = 309
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 161/295 (54%), Gaps = 42/295 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +++ NQ+ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKGSQFTLSKCMDAVMVLANSHLFMHRSNQLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
++Y D + +G++ + + + + +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPFPDCNPSGSKDGKYELLTAANDVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYV 156
G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKAVKDNQEMKSRIL--VIKAAEDSALQYM 176
Query: 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 NFMNVIFAAQKQNILIDACILDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPD 235
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 QDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|449279312|gb|EMC86947.1| General transcription factor IIH subunit 3, partial [Columba livia]
Length = 306
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 159/293 (54%), Gaps = 39/293 (13%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGYN 65
D++SL+VV++DTNP +W +L ++F + V+ N+ L +N+ N++ VIA+
Sbjct: 2 DELSLLVVVIDTNPIWWGKKALGEAEFTLSKCIDAVMVLGNSHLLMNRNNKLAVIASHTQ 61
Query: 66 SCDYVY------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL 107
++Y +S+ +G++ + ++ + + +++ M K E
Sbjct: 62 ESRFLYPGKRWAVADLFGDGGSSMESNCSGSRDGKYELLTAINDAIAEEIKDLMTKTEMK 121
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGL-LHPQP--------RGSPDGPEQYVAI 158
G+Q + L+GSL+ ALC I + S L Q + + D QY+
Sbjct: 122 GQQTE------TQLAGSLAKALCCILLIVESSKPLSNQEIKSRILVIKAAEDSALQYMNF 175
Query: 159 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 218
MN IF+AQ+ V ID+C L + +S LQQA ITGG++ K + L QYLL +F D
Sbjct: 176 MNVIFAAQKQSVLIDACVLES-DSGLLQQACDITGGIYLKVLHMPSLLQYLLWVFLPDQE 234
Query: 219 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C CSTC + F
Sbjct: 235 QRSQLVLPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICSTCETAF 287
>gi|66819921|ref|XP_643618.1| general transcription factor IIH, polypeptide 3 [Dictyostelium
discoideum AX4]
gi|74861043|sp|Q86IB5.1|TF2H3_DICDI RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=TFIIH basal transcription factor complex subunit 3
gi|60471553|gb|EAL69509.1| general transcription factor IIH, polypeptide 3 [Dictyostelium
discoideum AX4]
Length = 372
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 149/257 (57%), Gaps = 19/257 (7%)
Query: 32 LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVG--------- 82
+ F++FL H + F+NA L LNQ NQ+ +I + +V+ S+
Sbjct: 90 IGFNKFLEHFMVFINAYLMLNQENQLAIICSKIGESSFVFPQSNIDQYQQEQQELEQRQL 149
Query: 83 --NGRM-PSLCATLL-QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR- 137
NG + P+ T+ Q L + D ++ + + I S S S+S+ALCYI R+ R
Sbjct: 150 NENGELLPTPNKTIQGQILAKLQKLDLEIKHDQTD--ILSSSFSASMSIALCYINRIKRE 207
Query: 138 SGLLHPQP---RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGG 194
+ + P+ SPD QY+++MN IFS+Q+ +P+DSC L +S FLQQAS++T G
Sbjct: 208 TPTIKPRILVFNISPDVSSQYISVMNCIFSSQKQSIPVDSCILSQSDSTFLQQASHLTSG 267
Query: 195 VHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCL 254
++ KPQ+ + L QYLLT F D SR L P VD+RASCFCHK +D+GY+CSVCL
Sbjct: 268 IYLKPQKQELLSQYLLTTFLLDTLSRKSLAYPTLKSVDYRASCFCHKRIVDIGYVCSVCL 327
Query: 255 SIYCKHLKKCSTCGSVF 271
SI+C H CSTCG+ F
Sbjct: 328 SIFCGHSSSCSTCGTKF 344
>gi|348528468|ref|XP_003451739.1| PREDICTED: general transcription factor IIH subunit 3-like
[Oreochromis niloticus]
Length = 300
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 152/282 (53%), Gaps = 24/282 (8%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W + + S+ + V+ NA + + + N++ VIA+
Sbjct: 4 EDEINLLVIVVDVNPIWWGQQAQRDPQFTLSKCMDAVMVMGNAHMAMARTNKLAVIASHC 63
Query: 65 NSCDYVY--------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
++Y D S G+G+ L A EE N + K E G
Sbjct: 64 QGSHFLYPNKSWSGGDGGGNDASSSGDGKYELLSAANNLIAEEIRNI---MSKIEVTGNS 120
Query: 117 ACSLLSGSLSMALCYIQRVFRSGLLHPQ-------PRGSPDGPEQYVAIMNAIFSAQRSM 169
+LL+GSL+ ALCYI R+ + + + + + D QY+ MN IF+AQ+
Sbjct: 121 TDTLLAGSLAKALCYIHRLTKELEVGQEIKSRILVVKAAEDCALQYMNFMNVIFAAQKQN 180
Query: 170 VPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 229
+ ID+C L + +S LQQA ITGG++ K Q L QYLL +F D R+ L LP P
Sbjct: 181 ILIDACVLDS-DSGLLQQACDITGGLYLKIPQKVALAQYLLWVFLPDSEQRSQLVLPPPA 239
Query: 230 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 240 HVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 281
>gi|296213239|ref|XP_002753188.1| PREDICTED: general transcription factor IIH subunit 3 [Callithrix
jacchus]
Length = 309
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 161/289 (55%), Gaps = 30/289 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+ +L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDEWNLLVIVVDANPIWWGKQALKESQFTLSKCMDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCA---------TLLQNLEEFMNKD--EQLGKQE 111
++Y + G+ G PS LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPSEFNPSGSKDGKYELLTSANEVIAEEIKDLMTKSD 124
Query: 112 PEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAI 162
+G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ MN I
Sbjct: 125 IKGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRIL--VIKAAEDSALQYMNFMNVI 182
Query: 163 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 222
F+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 183 FAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWMFLPDQDQRSQ 241
Query: 223 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 242 LILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|345564048|gb|EGX47029.1| hypothetical protein AOL_s00097g75 [Arthrobotrys oligospora ATCC
24927]
Length = 374
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 158/320 (49%), Gaps = 65/320 (20%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWS----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
K +D +L V++LDTNP W+ SSSLSF L+ +L F NA L +Q N+ VIA
Sbjct: 13 KAPADLATLQVIILDTNPLAWATFEKSSSLSFPAALSQLLIFANAHLAFSQSNRCAVIAN 72
Query: 63 GYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ---------------- 106
+ ++ + + R P ++L+E N++
Sbjct: 73 HIDGVHFLSPADPGTDH-----RDPGEADLTPEDLKEIANQNASKYRVFRLLEDEVRASY 127
Query: 107 ---LGKQEPEGRIAC---SLLSGSLSMALCYIQRVFRSGL-------------------- 140
+ PE +AC S L+G+LS AL YI R+ G
Sbjct: 128 RRLIKNTTPEAVMACPNSSYLAGALSAALTYINRICFGGTGGRSSGVPGDEKSKVNSAGG 187
Query: 141 --------LHPQ---PRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQAS 189
+H + +PD QY+ +MN+IF+AQR VPID C L ++ FLQQA+
Sbjct: 188 KVDETGRTMHAKILVVSVTPDPANQYIPVMNSIFAAQRLKVPIDVCKL-RDSTVFLQQAA 246
Query: 190 YITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYI 249
TGGV+ +P+ GL QYL+ F D +R L LP V VDFRA+CFCHK +D+G++
Sbjct: 247 DATGGVYMEPEHPQGLIQYLMMGFLPDHLARQSLILPTKVDVDFRAACFCHKKVLDIGFV 306
Query: 250 CSVCLSIYCKHLKK--CSTC 267
CSVCLSI+C+ + CSTC
Sbjct: 307 CSVCLSIFCEPPQGAVCSTC 326
>gi|355693898|gb|AER99489.1| proteinral transcription factor IIH, polypeptide 3, 34kDa [Mustela
putorius furo]
Length = 286
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 159/291 (54%), Gaps = 42/291 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCA---TLLQNLEEFMNKDE 105
++Y + GN S +G+ A + + +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFSPSGSKDGKYELFTAANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYV 156
G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYM 176
Query: 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 NFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPD 235
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTC 267
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC
Sbjct: 236 QDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTC 286
>gi|432095027|gb|ELK26416.1| General transcription factor IIH subunit 3, partial [Myotis
davidii]
Length = 277
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 159/283 (56%), Gaps = 36/283 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNRLAVIASHI 64
Query: 65 NSCDYVY---------------DSSSTGNQS-VGNGRMPSLCA---TLLQNLEEFMNKDE 105
++Y + +S N S +G+ L A +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPASEYNPSGSKDGKYELLTAANEVIVEEIKDLMTKSD 124
Query: 106 QLGKQ-EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRGSPDGPEQYVAIMNAIFS 164
G+ EP LL+GSL+ ALCY Q + L+ + + D QY+ MN IF+
Sbjct: 125 IKGQHTEP-------LLAGSLAKALCYNQEMKSRILVI---KAAEDSALQYMNFMNVIFA 174
Query: 165 AQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 224
AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L
Sbjct: 175 AQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLT 233
Query: 225 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTC 267
LP P+ VD+RA+C CH+N I++GY+CSVCLSI+C C+TC
Sbjct: 234 LPPPIHVDYRAACLCHRNLIEIGYVCSVCLSIFCNFSPICTTC 276
>gi|410922922|ref|XP_003974931.1| PREDICTED: general transcription factor IIH subunit 3-like
[Takifugu rubripes]
Length = 298
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 152/281 (54%), Gaps = 24/281 (8%)
Query: 11 DDVSLVVVLLDTNPFFWS-----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
D++SL+V+++D NP +W S + S+ L V+ N+ + + + N++ VIA+
Sbjct: 5 DEISLLVIVVDVNPIWWGQQAQRESEFTLSKCLDSVMVLGNSHMAMARTNKLAVIASHCQ 64
Query: 66 SCDYVYDSS-----STGNQSV---GNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
++Y S+ G ++ G+G+ L EE N + K E G
Sbjct: 65 DSHFLYPSNKLQGGENGEENTSCSGDGKYELLSIANNSIAEEMRNL---MLKTEVRGNSN 121
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLHPQPR-------GSPDGPEQYVAIMNAIFSAQRSMV 170
+LL+GSL+ ALCYI RV + + + + + D QY+ MN IF+AQ+ +
Sbjct: 122 DTLLAGSLAKALCYINRVSKEMEVGQETKSRILVIKAAEDCALQYMNFMNVIFAAQKQNI 181
Query: 171 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 230
ID+C L +S LQQA ITGG++ K Q L QYLL +F D R+ L LP
Sbjct: 182 LIDACVLD-MDSGLLQQACDITGGLYLKIPQKAALAQYLLWVFLPDTEQRSQLLLPPRAH 240
Query: 231 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 241 VDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 281
>gi|403163144|ref|XP_003323260.2| hypothetical protein PGTG_04797 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163932|gb|EFP78841.2| hypothetical protein PGTG_04797 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 322
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 143/292 (48%), Gaps = 39/292 (13%)
Query: 11 DDVSLVVVLLDTNPFFWS--------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
D L+ V+LD NP W+ + S + L F N+ L L N + V
Sbjct: 7 DPADLLTVILDLNPLAWADLESGESQEETTSLVSVIESFLIFANSHLALRHENAIAVYGA 66
Query: 63 GYNSCDYVYDS------SSTGNQSVGNGRMPSL---------CATLLQNLEEFMNKDEQL 107
S + +Y S ++ +Q G+ + A+ ++ L
Sbjct: 67 SLGSSELLYSSLQAKPITTKSSQPSGSRDANTYQSFRILNDSIASGVKQLATLTQSSSMT 126
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRG--------SPDGPEQYVAIM 159
GKQ + +L+ ALC+I R+ R + S D P QY+ +M
Sbjct: 127 GKQPG--------IVKALAKALCHINRLARENENKKESLKARILILSVSSDAPGQYIPMM 178
Query: 160 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 219
N IFSAQ+S +PID C + +N+ FLQQA+++T G++++ ++ + QYL IF L +
Sbjct: 179 NCIFSAQKSTIPIDVCKISKENAVFLQQAAHLTEGIYYQIEKPKAILQYLTMIFLPGLAA 238
Query: 220 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R FL LPK VDFRA+CFCH+ ID+GY+CSVCLSI+C CSTC + F
Sbjct: 239 RKFLNLPKHQEVDFRAACFCHREIIDVGYVCSVCLSIFCTPTPVCSTCRTKF 290
>gi|307105142|gb|EFN53393.1| hypothetical protein CHLNCDRAFT_13819, partial [Chlorella
variabilis]
Length = 135
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 94/125 (75%)
Query: 147 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 206
+PD P QY+++MNAIFSAQRS V ID+C LG ++S FLQQA+Y+TGGV+ KP + L
Sbjct: 11 AAPDVPSQYISVMNAIFSAQRSGVLIDACQLGRRHSTFLQQAAYLTGGVYLKPSKPVALV 70
Query: 207 QYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCST 266
QYL ++F D +R FL++P VDFRASCFCHK ID+GY+CS CLSI+C+ L C+T
Sbjct: 71 QYLNSVFAVDAATRQFLRMPGTAHVDFRASCFCHKRQIDLGYVCSACLSIFCEQLPACTT 130
Query: 267 CGSVF 271
CG+ F
Sbjct: 131 CGTEF 135
>gi|307214269|gb|EFN89365.1| General transcription factor IIH subunit 3 [Harpegnathos saltator]
Length = 292
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 150/275 (54%), Gaps = 24/275 (8%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL+V++LD NP + SQ L + F NA L + N++ V+A +S +
Sbjct: 6 NTSLLVIVLDVNPVQRIVKQETKILSQCLDSAIVFANAHLMQSSNNELAVMACHGHSAKF 65
Query: 70 VYDSSSTGNQSVGNG---RMPSLCATLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y + +G R + T+ L++ +N+ D L + SL+SG
Sbjct: 66 LYPCENAAEIRQIDGQYERFTMVERTVRLQLQKVINELSTDTPLNTE--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGL----LHPQP---RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 176
+LSMALCYI R+ R + LHP+ S D QY+ MN F+AQ+ V +D C
Sbjct: 118 ALSMALCYIARLERDKVAGQKLHPRILVITASNDSATQYMNYMNIFFTAQKMNVILDVCS 177
Query: 177 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 236
L Q LQQ ITGG + K QL GL QYLL +F D + R+ L LP PV VD+RA+
Sbjct: 178 LD-QELTLLQQGCDITGGNYLKVPQLAGLLQYLLWVFLPDPNVRSKLVLPPPVKVDYRAA 236
Query: 237 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
CFCH+ ID+GY+CS+CLS++CK C+TC +VF
Sbjct: 237 CFCHQELIDIGYVCSICLSVFCKFSPICTTCHTVF 271
>gi|158296528|ref|XP_316918.4| AGAP008522-PA [Anopheles gambiae str. PEST]
gi|157014753|gb|EAA12181.5| AGAP008522-PA [Anopheles gambiae str. PEST]
Length = 288
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 149/277 (53%), Gaps = 24/277 (8%)
Query: 10 SDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+ D SL+V++LDTNP + +Q L ++AF NA L N++ V+A +++
Sbjct: 4 NKDASLLVIVLDTNPSQRIIREKPHNLTQCLDSIVAFANAHLMQKAQNKLAVLACHHHAT 63
Query: 68 DYVYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
++Y + Q G + +L T+ Q L +N L SLL+G
Sbjct: 64 QFLYPTPGKPLDIRQVDGQYEVFTLVEKTIKQKLAHMINTAPPLTTPTE------SLLAG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQPR---------GSPDGPEQYVAIMNAIFSAQRSMVPIDS 174
S+SMALCYI R+ R+ P + GS + QY+ MN F+AQ+ V +D
Sbjct: 118 SMSMALCYIARINRNK--APGSKINSRVLVVTGSNECASQYMTYMNVFFTAQKQGVVVDV 175
Query: 175 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 234
C L S LQQ ITGG + + +QL+G QYLL +F D R L LP PV VD+R
Sbjct: 176 CALDKALS-LLQQGCDITGGQYLRLEQLEGFLQYLLWVFLPDPQMRCKLVLPPPVKVDYR 234
Query: 235 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
A+CFCH+ ID+GY+CSVCLSI+CK C+TC +VF
Sbjct: 235 AACFCHRELIDIGYVCSVCLSIFCKFSPICTTCHTVF 271
>gi|189189624|ref|XP_001931151.1| RNA polymerase II transcription factor B subunit 4 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187972757|gb|EDU40256.1| RNA polymerase II transcription factor B subunit 4 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 370
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 162/330 (49%), Gaps = 65/330 (19%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSAALANILVFINAHLASGNANEVAVIASHSHKTAFLY 79
Query: 72 DSSST-------GNQSVGNGRMPSLC-------------ATLLQNLEEFMNKDEQLGKQE 111
+ S+ G N ++ + + +L+N + +N+ ++ +
Sbjct: 80 PTPSSPQPQSRHGTNGATNDKVHDMAESANKYRPFAVVESAILRNFVKLLNETKESHLEA 139
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRGSP---------------------- 149
+L+ G+LS+AL +I + +LH S
Sbjct: 140 ----TPTTLIGGALSLALTHIN---KQTILHAPTAASAESTALSALADSENAHVDRVPLT 192
Query: 150 ----------DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKP 199
D QY+ +MN+IF+AQR +PID L A ++ LQQAS TGGV+ KP
Sbjct: 193 SRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQASDATGGVYMKP 251
Query: 200 QQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK 259
+ +GL QYL+ F D+ +R L +P GVDFRA+CFCH+ +D+G++CSVCLSI+C
Sbjct: 252 DRPEGLLQYLMMAFLPDVTARTSLVVPSAGGVDFRAACFCHRKVVDIGFVCSVCLSIFCN 311
Query: 260 ---HLKKCSTCGSVFGQAQTQSDEPSATNR 286
C TCGS ++ P+ R
Sbjct: 312 PDLSDNLCMTCGSYLSLRSAVTNPPALIPR 341
>gi|170093117|ref|XP_001877780.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647639|gb|EDR11883.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 360
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 157/290 (54%), Gaps = 36/290 (12%)
Query: 12 DVSLVVVLLDTNPFFWSSS-------SLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
D S + V+LD +P W S LS + FL+HVLAFLNA L N + V
Sbjct: 11 DASHLSVVLDLSPTQWHLSGLLSNKYPLSLNSFLSHVLAFLNAHLASQHENTLAVFGAFP 70
Query: 65 NSCDYVYDSS--STGNQSV-GNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
+Y S+ + QS+ N P + +T++ + + ++ +Q ++ P C+
Sbjct: 71 GKSLMLYSSTLHNPELQSIDSNSYAPFKLVDSTIINRISDELDAIDQSEEEAP-----CA 125
Query: 120 LLSGSLSMALCYIQRV-------------FRSGLLHPQPR-----GSPDGPEQYVAIMNA 161
L+ G+L+ ALCY+ R+ R + P PR SPD Y+ IMN+
Sbjct: 126 LV-GALTKALCYVNRISLPPPSNSSTSPNTRDSTVLPDPRILILSVSPDLSTSYIPIMNS 184
Query: 162 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 221
IFSAQ+ V ID+C + ++ FLQQA+++TGG + ++ D L QYL+ F + R
Sbjct: 185 IFSAQKLKVTIDACQVYGPDAVFLQQAAHLTGGSYLFLERRDALLQYLIMSFLSAPSIRQ 244
Query: 222 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
L +P +DFRA+CFCHKN ID+G++CSVCLSI+C+ + CSTC + F
Sbjct: 245 VLAVPTQDRIDFRAACFCHKNIIDIGFVCSVCLSIFCQPVPVCSTCRTKF 294
>gi|47226419|emb|CAG08435.1| unnamed protein product [Tetraodon nigroviridis]
Length = 299
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 154/286 (53%), Gaps = 31/286 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
D++SL+V+++D NP +W + + S+ L ++ N+ + + + N++ VIA+
Sbjct: 4 EDEISLLVIVVDVNPIWWGQQAQRQPEFTLSKCLDAMMVLGNSHMAMARTNKLAVIASHC 63
Query: 65 NSCDYVYDSSS----TGN-----QSVGNGRMPSLCAT---LLQNLEEFMNKDEQLGKQEP 112
++Y S+ GN S G+G+ L +++ + M K E G
Sbjct: 64 QDSHFLYPSNKLQVGDGNGDENTSSSGDGKYELLSVANNLIVEEIRSVMLKTEVRGNSND 123
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-------GSPDGPEQYVAIMNAIFSA 165
+LL+GSL+ ALCYI RV + + + + + D QY+ MN IF+A
Sbjct: 124 ------TLLAGSLAKALCYINRVSKELEVGQETKSRILVIKAAEDSALQYMNFMNVIFAA 177
Query: 166 QRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 225
Q+ + ID+C L + +S LQQA ITGG++ K Q L QYLL +F D R+ L L
Sbjct: 178 QKQNILIDACVLDS-DSGLLQQACDITGGLYLKIPQKLALAQYLLWVFLPDTEQRSQLLL 236
Query: 226 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
P VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 237 PPRAHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 282
>gi|307175391|gb|EFN65408.1| General transcription factor IIH subunit 3 [Camponotus floridanus]
Length = 292
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 147/272 (54%), Gaps = 18/272 (6%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
D SL+V++LD NP + SQ L + F NA L + N++ ++A +S +
Sbjct: 6 DTSLLVIVLDINPVQRIVKQETKILSQCLDSTVVFANAHLMQSSNNELAIMACHGHSAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y + +G+ T+ Q L++ +N+ E SL+SG+LS
Sbjct: 66 LYPCENMAEIRQIDGQYEKFTMVERTVRQQLQQVINEISMNTPLNTE-----SLISGALS 120
Query: 127 MALCYIQRVFRSGL----LHPQP---RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 179
MALCYI R+ R LH + S D QY+ MN F+AQR V +D C L
Sbjct: 121 MALCYIARLEREKFANQKLHSRMLVITASNDSAMQYMNYMNIFFTAQRMNVILDVCSLD- 179
Query: 180 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 239
Q LQQ ITGG + + QL GL QYLL +F D R+ L LP PV V++RA+CFC
Sbjct: 180 QELTLLQQGCEITGGNYLQVPQLAGLLQYLLWVFLPDPSVRSKLVLPPPVKVNYRAACFC 239
Query: 240 HKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
H++ ID+GY+CS+CLSI+CK+ C+TC +VF
Sbjct: 240 HQDLIDIGYVCSICLSIFCKYSPICTTCHTVF 271
>gi|332019667|gb|EGI60141.1| General transcription factor IIH subunit 3 [Acromyrmex echinatior]
Length = 292
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 148/275 (53%), Gaps = 24/275 (8%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL+V++LD NP + SQ L + F NA L + N++ +++ + +
Sbjct: 6 ETSLLVIVLDVNPMQRIVKQETKILSQCLDSTIVFANAHLMQSSNNELAIMSCHGHGARF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y + +G+ T+ Q L++ +N+ D L + SL+SG
Sbjct: 66 LYPCENAIEIRQMDGQYEKFTMVERTVRQQLQQVINEISMDVPLNME--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGL----LHPQP---RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 176
+LSMALCYI R+ R + LHP+ S D QY+ MN F+AQR V +D C
Sbjct: 118 ALSMALCYIARLEREKVAGQKLHPRMLVITASNDSATQYMNYMNIFFTAQRMNVILDVCS 177
Query: 177 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 236
L Q LQQ ITGG + K QL GL QYLL +F D R+ L LP PV VD+RA+
Sbjct: 178 LD-QELTLLQQGCDITGGNYLKVPQLAGLLQYLLWVFLPDPSVRSKLVLPPPVKVDYRAA 236
Query: 237 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
CFCH+ ID+GY+CS+CLSI+CK C+TC +VF
Sbjct: 237 CFCHQELIDIGYVCSICLSIFCKFSPICTTCHTVF 271
>gi|213409415|ref|XP_002175478.1| RNA polymerase II transcription factor B subunit 4
[Schizosaccharomyces japonicus yFS275]
gi|212003525|gb|EEB09185.1| RNA polymerase II transcription factor B subunit 4
[Schizosaccharomyces japonicus yFS275]
Length = 295
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 148/271 (54%), Gaps = 15/271 (5%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+VV+LD NP W S S+ L ++ F+NA L + N+V VIA+ +S +
Sbjct: 21 DTPSLLVVILDANPVSWYSLAQKAPISEILADIIVFINAHLAFHHENRVAVIASHTDSVE 80
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF--MNKDEQLGKQEPEGRIAC-SLLSGSL 125
++Y ++ ++ P A + E M + E I+ +++SG+L
Sbjct: 81 FLYPTTKDNRKTKQVD--PEKDANTYRKFREVDDMVLEGMARLVESTNSISTKTMMSGAL 138
Query: 126 SMALCYIQRV-----FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 180
S AL YI R+ RS +L G D QY++ MN IF AQ+ +PI+ C L ++
Sbjct: 139 SRALAYINRIQTESPLRSRILIFSLSG--DVALQYISTMNCIFCAQKKNIPINVCSL-SK 195
Query: 181 NSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCH 240
+ FL+QA TGG++ K ++ GL Q+L+ D + R + +P VDFRA+CFCH
Sbjct: 196 ETLFLEQAVDATGGIYIKVEEPKGLLQHLMMSLFPDQNLRKHINIPNQANVDFRATCFCH 255
Query: 241 KNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
K +D+GY+CSVCLSI+C +C+TC S F
Sbjct: 256 KKILDIGYVCSVCLSIFCSPRDQCTTCHSTF 286
>gi|157132766|ref|XP_001662634.1| transcription factor TFIIH-subunit, putative [Aedes aegypti]
gi|108871079|gb|EAT35304.1| AAEL012523-PA [Aedes aegypti]
Length = 288
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 151/275 (54%), Gaps = 20/275 (7%)
Query: 10 SDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+ D SL+V+++DTNP + +Q L ++AF NA L N++ V+A +++
Sbjct: 4 NKDASLLVIVMDTNPSQRIIRENPHHLTQCLDSIVAFANAHLMQKAQNKLAVLACHHHAT 63
Query: 68 DYVYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
+++Y + Q G +L T+ Q L + +++ +L SLL+G
Sbjct: 64 EFLYPTPGKPLDIRQVDGQYEAFTLVEKTIKQKLAKVISEAPRLTVPTE------SLLAG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQPR-------GSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 176
S++MALCYI RV R+ + GS + QY+ MN F+AQ+ V +D C
Sbjct: 118 SMAMALCYIARVHRNKPAGVKINSRILVVTGSNECASQYMTYMNVFFTAQKQNVSLDVCA 177
Query: 177 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 236
L S LQQ ITGG + K QLDG QYLL +F + +R L LP PV VD+RA+
Sbjct: 178 LDKPLS-LLQQGCDITGGQYLKLPQLDGFLQYLLWVFLPEPLTRCKLVLPPPVKVDYRAA 236
Query: 237 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
CFCH+ ID+GY+CSVCLSI+CK C+TC +VF
Sbjct: 237 CFCHRELIDIGYVCSVCLSIFCKFSPICTTCHTVF 271
>gi|24580793|ref|NP_608574.2| Tfb4 [Drosophila melanogaster]
gi|22945518|gb|AAF51411.2| Tfb4 [Drosophila melanogaster]
gi|94400646|gb|ABF17925.1| FI01003p [Drosophila melanogaster]
Length = 299
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 156/284 (54%), Gaps = 26/284 (9%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A SK + L+V++LDTNP F + + +Q L V+AF NA L N++ V++
Sbjct: 6 AASKEAESCIDLLVIVLDTNPSQHFVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVS 65
Query: 62 TGYNSCDYVYDSSSTGNQ-SVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIA 117
+++ +++Y + +G+ + NL E K +QLG P
Sbjct: 66 CSHHATNFLYPLPRRQVELRQVDGQYEAF------NLVEKTVK-QQLGSILMNAPRLSAP 118
Query: 118 C-SLLSGSLSMALCYIQRVFRSGLLHPQPR---------GSPDGPEQYVAIMNAIFSAQR 167
C SLL+GS+SMALCYI R+ R+ L P + GS + QY+ MN F+AQ+
Sbjct: 119 CESLLAGSMSMALCYISRLQRN--LAPGVKMHSRILVVTGSNECASQYMTFMNVFFTAQK 176
Query: 168 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
+ ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP
Sbjct: 177 LGITIDTCALD-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPAPQIRHKLVLPP 235
Query: 228 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
P VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 236 PPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|322795304|gb|EFZ18109.1| hypothetical protein SINV_08150 [Solenopsis invicta]
Length = 322
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/282 (37%), Positives = 149/282 (52%), Gaps = 19/282 (6%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL+V++ D NP + SQ L + F NA L + N++ ++A +S +
Sbjct: 4 ETSLLVIVFDVNPMQRIVKQETKILSQCLDSTIVFANAHLMQSSNNELAIMACHSHSARF 63
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y + +G+ T+ Q L++F+N+ E SL+SG+LS
Sbjct: 64 LYPCENAVEIRQMDGQYEKFTMVERTVRQQLQQFINEIPMDAPLNTE-----SLISGALS 118
Query: 127 MALCYIQRVFRSGL----LHPQP---RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 179
MALCYI R+ R + LHP+ S D QY+ MN F+AQR V +D C L
Sbjct: 119 MALCYIARLEREKVAGQKLHPRILVITASNDSATQYMNYMNIFFTAQRMNVILDVCSLD- 177
Query: 180 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 239
Q LQQ I+GG + K QL GL QYLL +F D R L LP PV VD+RA+CFC
Sbjct: 178 QELTLLQQGCDISGGNYLKVPQLAGLLQYLLWVFLPDPSVRLKLVLPPPVKVDYRAACFC 237
Query: 240 HKNTIDMGYICSVCLSIYCKHLKKCSTCG-SVFGQAQTQSDE 280
H+ ID+GY+CS+CLSI+CK C+TC A+T +D+
Sbjct: 238 HQELIDIGYVCSICLSIFCKFSPICTTCQYHCIQNARTYADK 279
>gi|330933521|ref|XP_003304199.1| hypothetical protein PTT_16692 [Pyrenophora teres f. teres 0-1]
gi|311319344|gb|EFQ87711.1| hypothetical protein PTT_16692 [Pyrenophora teres f. teres 0-1]
Length = 376
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 161/336 (47%), Gaps = 71/336 (21%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSAALANILVFINAHLASGNANEVAVIASHSHKTTFLY 79
Query: 72 DS-------------SSTGNQSVGNGRMPSLC-------------ATLLQNLEEFMNKDE 105
+ STG N + ++ + +L+N + +N+ +
Sbjct: 80 PTPLSPQPQSRHGTNDSTGTNGATNDKEHAMAESANKYRPFAVVESAILRNFVKLLNETK 139
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRGSP---------------- 149
+ + +L+ G+LS+AL +I + +LH S
Sbjct: 140 ESHLEA----TPTTLIGGALSLALTHIN---KQTILHAPTAASAESTALSALADSENTHV 192
Query: 150 ----------------DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITG 193
D QY+ +MN+IF+AQR +PID L A ++ LQQAS TG
Sbjct: 193 DRVPLTSRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQASDATG 251
Query: 194 GVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVC 253
GV+ KP + +GL QYL+ F D +R L +P GVDFRA+CFCH+ +D+G++CSVC
Sbjct: 252 GVYMKPDRPEGLLQYLMMAFLPDATARTSLVVPSAGGVDFRAACFCHRKVVDIGFVCSVC 311
Query: 254 LSIYCK---HLKKCSTCGSVFGQAQTQSDEPSATNR 286
LSI+C C TCGS ++ P+ R
Sbjct: 312 LSIFCNPDLSDNLCMTCGSYLSLRSAVTNPPALIPR 347
>gi|451999247|gb|EMD91710.1| hypothetical protein COCHEDRAFT_1136566 [Cochliobolus
heterostrophus C5]
Length = 377
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 164/337 (48%), Gaps = 72/337 (21%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSTALANILVFINAHLASGNTNEVAVIASHSHKTTFLY 79
Query: 72 DS---------SSTGNQSV----------------GNGRMP--SLCATLLQNLEEFMNKD 104
S + T N V N P + +T+LQN + +N+
Sbjct: 80 PSPVAPQTQARNGTANGDVEMNGTGGDKGQHTAESANKYRPFAVVESTILQNFVKLLNET 139
Query: 105 EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRG----------------- 147
++ + +L+ G+LS+AL +I + +LH
Sbjct: 140 KESHLEA----TPTTLIGGALSLALTHINK---QTILHAPTAASAESASLAALADSENTH 192
Query: 148 ---------------SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYIT 192
S D QY+ +MN+IF+AQR +PID L A ++ LQQAS T
Sbjct: 193 VDRVSLTSRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQASDAT 251
Query: 193 GGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSV 252
GGV+ KP++ +GL QYL+ F D+ +R L +P GVDFRA+CFCH+ +D+G++CSV
Sbjct: 252 GGVYMKPERPEGLLQYLMMAFLPDVTARASLVVPSAGGVDFRAACFCHRKVVDIGFVCSV 311
Query: 253 CLSIYCK---HLKKCSTCGSVFGQAQTQSDEPSATNR 286
CLSI+C C TCGS ++ P+ R
Sbjct: 312 CLSIFCSPDLPGNLCLTCGSYLSLRSAMTNPPALIPR 348
>gi|442749163|gb|JAA66741.1| Putative rna polymer [Ixodes ricinus]
Length = 293
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/276 (36%), Positives = 148/276 (53%), Gaps = 23/276 (8%)
Query: 11 DDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D+ SL+V ++DTNP S S+ L + F N+ L LN N++ +IA+ +
Sbjct: 5 DEGSLLVAIIDTNPCASLLESDQGIVSKLLDALTVFCNSHLMLNPCNKLAIIASHSHRST 64
Query: 69 YVY---DSSSTGNQSVGNGR---MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLS 122
++Y SS+ SV +G+ + + ++E + D+ E SLL+
Sbjct: 65 FIYPKPQESSSDTYSV-DGQYELFTEVTGAIKDGVKELVLSDDS------ESAAGESLLT 117
Query: 123 GSLSMALCYIQRVFRSGLLHPQP-------RGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 175
G LS+ALCYI R+ + + S + QY+ MN F+AQ+ V ID+C
Sbjct: 118 GGLSLALCYINRIEKESSSQNKIASRILVLSASGESASQYLNFMNVFFTAQKKNVIIDAC 177
Query: 176 YLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA 235
L ++S LQQ ITGG + K GL QYLL +F D SRN++ P PV VD+RA
Sbjct: 178 VL-EKDSGLLQQGCDITGGKYMKVPNHAGLLQYLLWVFLPDKTSRNYMVFPPPVHVDYRA 236
Query: 236 SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+CFCH+N I++GY+CSVCLSI+C CSTC + F
Sbjct: 237 ACFCHRNLIEIGYVCSVCLSIFCAFSPICSTCQTAF 272
>gi|451848115|gb|EMD61421.1| hypothetical protein COCSADRAFT_173760 [Cochliobolus sativus
ND90Pr]
Length = 377
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 163/337 (48%), Gaps = 72/337 (21%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSTALANILVFINAHLASGNTNEVAVIASHSHKTTFLY 79
Query: 72 DSS----STGNQSVGNGRM-----------------------PSLCATLLQNLEEFMNKD 104
S + + NG + + +T+LQN + +N+
Sbjct: 80 PSPVAPQAQSRNGIANGDVEMNGIGDDKGQHTAESANKYRPFAVVESTILQNFVKLLNET 139
Query: 105 EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRG----------------- 147
++ + +L+ G+LS+AL +I + +LH
Sbjct: 140 KESHLEA----TPTTLIGGALSLALTHINK---QTILHAPTAASAESASLAALADSENTH 192
Query: 148 ---------------SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYIT 192
S D QY+ +MN+IF+AQR +PID L A ++ LQQAS T
Sbjct: 193 VDRVSLTSRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQASDAT 251
Query: 193 GGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSV 252
GGV+ KP++ +GL QYL+ F D+ +R L +P GVDFRA+CFCH+ +D+G++CSV
Sbjct: 252 GGVYMKPERPEGLLQYLMMAFLPDVTARASLVVPSAGGVDFRAACFCHRKVVDIGFVCSV 311
Query: 253 CLSIYCK---HLKKCSTCGSVFGQAQTQSDEPSATNR 286
CLSI+C C TCGS ++ P+ R
Sbjct: 312 CLSIFCSPDLPDNLCLTCGSYLSLRSAMTNPPALIPR 348
>gi|194853925|ref|XP_001968252.1| GG24611 [Drosophila erecta]
gi|190660119|gb|EDV57311.1| GG24611 [Drosophila erecta]
Length = 299
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/284 (37%), Positives = 155/284 (54%), Gaps = 26/284 (9%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A SK + L+V++LDTNP + + +Q L V+AF NA L N++ V++
Sbjct: 6 AASKEAESCIDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVS 65
Query: 62 TGYNSCDYVY---DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGR 115
+++ +++Y Q G SL ++ +QLG P
Sbjct: 66 CSHHATNFLYPLPRRQVELRQVDGQYEAFSLVEKTVK---------QQLGSILMNAPRLS 116
Query: 116 IAC-SLLSGSLSMALCYIQRVFRS---GL-LHPQP---RGSPDGPEQYVAIMNAIFSAQR 167
C SLL+GS+SMALCYI R+ R+ G+ +H + GS + QY+ MN F+AQ+
Sbjct: 117 APCESLLAGSMSMALCYISRLQRNVAPGVKMHSRILVLTGSNECASQYMTFMNVFFTAQK 176
Query: 168 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
+ ID+C L + + LQQ IT G K QLDGL QYLL +F H R+ L LP
Sbjct: 177 LGITIDTCALN-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPAPHIRHKLVLPP 235
Query: 228 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
P VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 236 PPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|350407575|ref|XP_003488130.1| PREDICTED: general transcription factor IIH subunit 3-like [Bombus
impatiens]
Length = 292
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 147/275 (53%), Gaps = 24/275 (8%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++V+LD NP + +Q L + F NA L + NQ+ VIA + +
Sbjct: 6 ETSLLIVVLDVNPVQRIIKQETRILTQCLDSTVVFANAHLMQSSNNQLAVIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y +G+ T+ Q L++ +N+ D+ L + SL+SG
Sbjct: 66 LYPCEKPLEIRQIDGQYEKFTMIERTIRQQLQQVINEISMDKPLNGE--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQP-------RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 176
+L+MALCY+ R+ R + + S D QY+ MN F+AQ+ + +D C
Sbjct: 118 ALTMALCYVARLEREKVASEKIYSRILVITASNDSATQYMNYMNIFFTAQKMGIILDVCS 177
Query: 177 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 236
L Q LQQ ITGG + K QL+GL QYLL IF D + R+ L LP PV VD+RA+
Sbjct: 178 LD-QELTLLQQGCDITGGNYLKVPQLNGLLQYLLWIFLPDPNVRSKLVLPPPVKVDYRAA 236
Query: 237 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
CFCH+ ID+GY+CS+CLSI+CK C+TC +VF
Sbjct: 237 CFCHQELIDIGYVCSICLSIFCKFSPICTTCHTVF 271
>gi|195575703|ref|XP_002077716.1| GD22925 [Drosophila simulans]
gi|194189725|gb|EDX03301.1| GD22925 [Drosophila simulans]
Length = 299
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 154/281 (54%), Gaps = 24/281 (8%)
Query: 6 SKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
SK + L+V++LDTNP F + + +Q L V+AF NA L N++ V++
Sbjct: 8 SKEAESCIDLLVIVLDTNPSQHFVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVSCS 67
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIAC-S 119
+++ +++Y + V +M NL E K +QLG P C S
Sbjct: 68 HHATNFLY---PLPRRQVELRQMDGQYEAF--NLVEKTVK-QQLGSILMNAPRLSAPCES 121
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPR---------GSPDGPEQYVAIMNAIFSAQRSMV 170
LL+GS+SMALCYI R+ R+ L P + GS + QY+ MN F+AQ+ +
Sbjct: 122 LLAGSMSMALCYISRLQRN--LAPGVKMHSRILVLTGSNECASQYMTFMNVFFTAQKLGI 179
Query: 171 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 230
ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP P
Sbjct: 180 TIDTCALD-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPAPQIRHKLVLPPPPK 238
Query: 231 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 239 VDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|195350283|ref|XP_002041670.1| GM16625 [Drosophila sechellia]
gi|194123443|gb|EDW45486.1| GM16625 [Drosophila sechellia]
Length = 299
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 152/274 (55%), Gaps = 24/274 (8%)
Query: 13 VSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
+ L+V++LDTNP F + + +Q L V+AF NA L N++ V++ +++ +++
Sbjct: 15 IDLLVIVLDTNPSQHFVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVSCSHHATNFL 74
Query: 71 YDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIAC-SLLSGSLS 126
Y + V +M NL E K +QLG P C SLL+GS+S
Sbjct: 75 Y---PLPRRQVELRQMDGQYEAF--NLVEKTVK-QQLGSILMNAPRLSAPCESLLAGSMS 128
Query: 127 MALCYIQRVFRSGLLHPQPR---------GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 177
MALCYI R+ R+ L P + GS + QY+ MN F+AQ+ + ID+C L
Sbjct: 129 MALCYISRLQRN--LAPGVKMHSRILVLTGSNECASQYMTFMNVFFTAQKLGITIDTCAL 186
Query: 178 GAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASC 237
+ + LQQ IT G K QLDGL QYLL +F R+ L LP P VD+RASC
Sbjct: 187 D-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPAPQIRHKLVLPPPPKVDYRASC 245
Query: 238 FCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
FCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 246 FCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|17945214|gb|AAL48665.1| RE13149p [Drosophila melanogaster]
Length = 299
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/284 (37%), Positives = 156/284 (54%), Gaps = 26/284 (9%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A SK + L+V++LDTNP F + + +Q L V+AF NA L N++ V++
Sbjct: 6 AASKEAESCIDLLVIVLDTNPSQHFVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVS 65
Query: 62 TGYNSCDYVYDSSSTGNQ-SVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIA 117
+++ +++Y + +G+ + NL E K +QLG P
Sbjct: 66 CSHHATNFLYPLPRRQVELRQVDGQYEAF------NLVEKTVK-QQLGSILMNAPRLSAP 118
Query: 118 C-SLLSGSLSMALCYIQRVFRSGLLHPQPR---------GSPDGPEQYVAIMNAIFSAQR 167
C SLL+GS+SMALCYI R+ R+ L P + GS + QY+ +N F+AQ+
Sbjct: 119 CESLLAGSMSMALCYISRLQRN--LAPGVKMHSRILVVTGSNECASQYMTFLNVFFTAQK 176
Query: 168 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
+ ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP
Sbjct: 177 LGITIDTCALD-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPAPQIRHKLVLPP 235
Query: 228 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
P VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 236 PPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|340717520|ref|XP_003397229.1| PREDICTED: general transcription factor IIH subunit 3-like [Bombus
terrestris]
Length = 292
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/275 (36%), Positives = 147/275 (53%), Gaps = 24/275 (8%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++++LD NP + +Q L + F NA L + NQ+ VIA + +
Sbjct: 6 ETSLLIIVLDVNPVQRIIKQETRILTQCLDSTVVFANAHLMQSSNNQLAVIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y +G+ T+ Q L++ +N+ D+ L + SL+SG
Sbjct: 66 LYPCEKPLEIRQIDGQYEKFTMIERTIRQQLQQVINEISMDKPLNGE--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQP-------RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 176
+L+MALCY+ R+ R + + S D QY+ MN F+AQ+ + +D C
Sbjct: 118 ALTMALCYVARLEREKVASEKIYSRILVITASNDSATQYMNYMNIFFTAQKMGIILDVCS 177
Query: 177 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 236
L Q LQQ ITGG + K QL+GL QYLL IF D + R+ L LP PV VD+RA+
Sbjct: 178 LD-QELTLLQQGCDITGGNYLKVPQLNGLLQYLLWIFLPDPNVRSKLVLPPPVKVDYRAA 236
Query: 237 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
CFCH+ ID+GY+CS+CLSI+CK C+TC +VF
Sbjct: 237 CFCHQELIDIGYVCSICLSIFCKFSPICTTCHTVF 271
>gi|170028289|ref|XP_001842028.1| TFIIH basal transcription factor complex p34 subunit [Culex
quinquefasciatus]
gi|167874183|gb|EDS37566.1| TFIIH basal transcription factor complex p34 subunit [Culex
quinquefasciatus]
Length = 292
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 151/279 (54%), Gaps = 24/279 (8%)
Query: 10 SDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
++D SL+V++LDTNP + +Q L ++ F NA L N++ V+A +++
Sbjct: 4 NNDTSLLVIVLDTNPSQRIIRENPHHLTQCLDSIVGFANAHLMQKAHNKLAVLACHHHAT 63
Query: 68 DYVYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
+++Y + Q G +L T+ Q L +N+ +L SLL+G
Sbjct: 64 EFLYPNPGKPLDIRQVDGQYEQFTLVEKTIKQKLARMINEAPRLAAPTE------SLLAG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQPR-------GSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 176
S++MALCYI R+ R+ + GS + QY+ MN F+AQ+ V +D C
Sbjct: 118 SMAMALCYIARINRNKPAGVKINSRILVVTGSNECASQYMTYMNVFFTAQKQNVTLDVCA 177
Query: 177 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD--LHS--RNFLQLPKPVGVD 232
L S LQQ ITGG + K QLDG QYLL +F D +H R L LP PV VD
Sbjct: 178 LDKPLS-LLQQGCDITGGQYLKLPQLDGFLQYLLWVFLPDPQMHPQMRCKLVLPPPVKVD 236
Query: 233 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+RA+CFCH+ ID+GY+CSVCLSI+CK C+TC +VF
Sbjct: 237 YRAACFCHRELIDIGYVCSVCLSIFCKFSPICTTCHTVF 275
>gi|332375937|gb|AEE63109.1| unknown [Dendroctonus ponderosae]
Length = 300
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 157/300 (52%), Gaps = 29/300 (9%)
Query: 5 PSKLYSDDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
P +D++SL+VV+LDTNP + + V+AF N+ L N++ V+A
Sbjct: 12 PEITSADEISLLVVILDTNPTQKMLRDKQNQLTNIVDSVVAFSNSHLMQKAQNKLAVMAC 71
Query: 63 GYNSCDYVYDSSSTG-NQSVGNGRMPSLC---ATLLQNLEEFMNKDEQLGKQEPEGRIAC 118
+ ++Y + + +G+ + T+ QNL E + + E
Sbjct: 72 HSKTSQFIYPGAKKPLDVRQVDGQYEAFLLVEKTVKQNLAELLASESSTAVTE------- 124
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPR---------GSPDGPEQYVAIMNAIFSAQRSM 169
SLL+G+++MALCYI R+ R+ P + GS D QY+ MN F+AQ+
Sbjct: 125 SLLAGAIAMALCYIARLQRTK--PPGSKLNSRILVVSGSGDSASQYMNYMNVFFTAQKLN 182
Query: 170 VPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 229
V +D C L Q+ + LQQ ITGG++ K Q+ L Q+LL +F + R L LP PV
Sbjct: 183 VVLDVCALD-QHLSLLQQCCDITGGMYLKVPQITALLQFLLWVFLPEPPIREKLVLPPPV 241
Query: 230 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 289
VD+RA+CFCH+ ID+G++CSVCLSI+CK C+TC VF + +P +KRK
Sbjct: 242 KVDYRAACFCHRELIDIGFVCSVCLSIFCKFSPICTTCHMVFKIPGPLAVKP----KKRK 297
>gi|194759192|ref|XP_001961833.1| GF14734 [Drosophila ananassae]
gi|190615530|gb|EDV31054.1| GF14734 [Drosophila ananassae]
Length = 297
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 154/284 (54%), Gaps = 22/284 (7%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVV 59
A SK + L+V++LDTNP + + +Q L V+AF NA L N++ V
Sbjct: 3 AETSSKEAESSIDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAV 62
Query: 60 IATGYNSCDYVY---DSSSTGNQSVGNGRMPSLC-ATLLQNLEE-FMNKDEQLGKQEPEG 114
++ +++ +++Y Q G SL T+ Q L MN G E
Sbjct: 63 LSCSHHATNFLYPLPRRQVELRQVDGQYEAFSLVEKTVKQQLGSILMNAPRLNGPSE--- 119
Query: 115 RIACSLLSGSLSMALCYIQRVFR---SGL-LHPQP---RGSPDGPEQYVAIMNAIFSAQR 167
SLL+GS+SMALCYI R+ R SG+ +H + GS + QY+ MN F+AQ+
Sbjct: 120 ----SLLAGSMSMALCYISRLQRNVTSGVKMHSRILVLTGSNECASQYMTFMNVFFTAQK 175
Query: 168 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
+ ID+C L + + LQQ IT G K QL+GL QYLL +F R+ L LP
Sbjct: 176 LGIVIDTCALD-KTLSLLQQGCDITSGQFLKVTQLEGLLQYLLWVFLPAPQMRHKLVLPP 234
Query: 228 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
P VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 235 PPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 278
>gi|380030634|ref|XP_003698948.1| PREDICTED: general transcription factor IIH subunit 3-like [Apis
florea]
Length = 292
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 144/272 (52%), Gaps = 18/272 (6%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++++LD NP + +Q L + F NA L + NQ+ VIA + +
Sbjct: 6 ETSLLIIILDVNPVQRIIKQETRILTQCLDSTIVFANAHLMQSSNNQLAVIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y +G+ T+ Q L++ +N E + G SL+SG+L+
Sbjct: 66 LYPCEDALEIRQIDGQYEKFTMIELTVRQQLQKVIN--EITSNKLLSGE---SLISGALT 120
Query: 127 MALCYIQRVFRSGLLHPQ-------PRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 179
MALCYI R+ R + + S D QY+ MN F+AQ+ V +D C L
Sbjct: 121 MALCYIARLEREKIAGEKLYSRILVITASNDSATQYMNYMNIFFTAQKMGVILDVCSLD- 179
Query: 180 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 239
Q LQQ ITGG + K QL+GL QYLL IF D + R+ L P PV VD+RA+CFC
Sbjct: 180 QELTLLQQGCDITGGNYLKVPQLNGLLQYLLWIFLPDPNVRSKLVFPPPVKVDYRAACFC 239
Query: 240 HKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
H+ ID+GY+CS+CLSI+CK C+TC +VF
Sbjct: 240 HQELIDIGYVCSICLSIFCKFSPICTTCHTVF 271
>gi|198475301|ref|XP_001357006.2| GA18615 [Drosophila pseudoobscura pseudoobscura]
gi|198138760|gb|EAL34072.2| GA18615 [Drosophila pseudoobscura pseudoobscura]
Length = 298
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 152/273 (55%), Gaps = 22/273 (8%)
Query: 13 VSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
+ L+V++LDTNP + + +Q L V+AF NA L N++ VI+ +++ +++
Sbjct: 15 IDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVISCAHHATNFL 74
Query: 71 YDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIAC-SLLSGSL 125
Y Q G SL T+ Q L + +LG C SLL+GS+
Sbjct: 75 YPQPRRQVELRQIDGQYEAFSLVEKTVKQQLGSILMNAPRLGS-------PCESLLAGSM 127
Query: 126 SMALCYIQRVFR---SGL-LHPQP---RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 178
+MALCYI R+ R +G+ +H + GS + QY+ MN F+AQ+ + ID+C L
Sbjct: 128 AMALCYISRLQRNVAAGVKMHSRILVLTGSNECSSQYMTFMNVFFTAQKLGITIDTCALD 187
Query: 179 AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCF 238
+ + LQQ IT G K QLDGL QYLL +F R+ L LP P VD+RASCF
Sbjct: 188 -KTLSLLQQGCDITTGQFLKVTQLDGLLQYLLWVFLPAPQMRHKLVLPPPPKVDYRASCF 246
Query: 239 CHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
CH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 247 CHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|110757998|ref|XP_394705.3| PREDICTED: general transcription factor IIH subunit 3 [Apis
mellifera]
Length = 292
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 144/272 (52%), Gaps = 18/272 (6%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++++LD NP + +Q L + F NA L + NQ+ VIA + +
Sbjct: 6 ETSLLIIILDVNPVQRIIKQETRILTQCLDSTIVFANAHLMQSSNNQLAVIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y +G+ T+ Q L++ +N E + G SL+SG+L+
Sbjct: 66 LYPCEDALEIRQIDGQYEKFTMIELTVRQQLQKVIN--EITSNKILNGE---SLISGALT 120
Query: 127 MALCYIQRVFRSGLLHPQ-------PRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 179
MALCYI R+ R + + S D QY+ MN F+AQ+ V +D C L
Sbjct: 121 MALCYIARLEREKIAGEKLYSRILVITASNDSATQYMNYMNIFFTAQKMGVILDVCSLD- 179
Query: 180 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 239
Q LQQ ITGG + K QL+GL QYLL IF D + R+ L P PV VD+RA+CFC
Sbjct: 180 QELTLLQQGCDITGGNYLKVPQLNGLLQYLLWIFLPDPNVRSKLVFPPPVKVDYRAACFC 239
Query: 240 HKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
H+ ID+GY+CS+CLSI+CK C+TC +VF
Sbjct: 240 HQELIDIGYVCSICLSIFCKFSPICTTCHTVF 271
>gi|396462438|ref|XP_003835830.1| similar to RNA polymerase II transcription factor B subunit 4
[Leptosphaeria maculans JN3]
gi|312212382|emb|CBX92465.1| similar to RNA polymerase II transcription factor B subunit 4
[Leptosphaeria maculans JN3]
Length = 375
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 164/336 (48%), Gaps = 72/336 (21%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSAALANILVFINAHLASGNANEVAVIASHSHKTTFLY 79
Query: 72 D--SSSTGNQSVGNGRM----------PSLCA-------------TLLQNLEEFMNK-DE 105
SSS + NG + P + +L+N + +++ +E
Sbjct: 80 PTPSSSPRPRKAANGDVEMNGAGGNSEPHMAENPNKYRPFAIVENAILRNFAKLLDETNE 139
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRG------------------ 147
+ P +L+ G+LS+AL +I + +LH
Sbjct: 140 RHLAATP-----TTLIGGALSLALTHINK---QTMLHAPTAASAESASLAALADAENTHV 191
Query: 148 --------------SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITG 193
S D QY+ +MN+IF+AQR +PID L A ++ LQQAS TG
Sbjct: 192 DRIPLTSRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQASDATG 250
Query: 194 GVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVC 253
GV+ KP++ +GL QYL+ F D+ +R L +P GVDFRA+CFCH+ +D+G++CSVC
Sbjct: 251 GVYMKPERPEGLLQYLMMAFLPDVTARASLVVPNAGGVDFRAACFCHRRVVDIGFVCSVC 310
Query: 254 LSIYCK---HLKKCSTCGSVFGQAQTQSDEPSATNR 286
LSI+C C TCGS ++ P+ R
Sbjct: 311 LSIFCSPDLPDNLCLTCGSYLSLRSAMTNTPALIPR 346
>gi|389741855|gb|EIM83043.1| Tfb4-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 400
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 147/296 (49%), Gaps = 45/296 (15%)
Query: 11 DDVSLVVVLLDTNPFFW-------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + +++D +P W ++ L FL+HVL F+N+ + N + V
Sbjct: 2 DKASHLSLIIDLSPSQWLLSADPSNAHPLPLHVFLSHVLTFINSHIASKHENSLAVFGAL 61
Query: 64 -------YNSCDYVYDSSSTGNQSVGNGRMP------SLCATLLQNLE--EFMNKDEQLG 108
Y+S D + D T ++S N P ++ + + LE E NK E+
Sbjct: 62 PGKSVMLYSSSDSIPDQDQTADESSANSYRPFRLVDSAIVRRITEELELLEAQNKPEE-- 119
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRVF--------RSGLLHPQPR-----GSPDGPEQY 155
EP L G+L+ ALCYI R+ H PR SPD Y
Sbjct: 120 --EPVA------LVGALTKALCYINRITHVPTANAPEDPAAHVDPRILILSVSPDLSTAY 171
Query: 156 VAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGT 215
+ +MN+IFSAQ+ V ID C + ++ FLQQ +++T G + ++ D L QYL+ F
Sbjct: 172 IPVMNSIFSAQKLKVTIDVCKVYGPDTVFLQQTAHLTAGSYIYLERRDALLQYLIMSFLP 231
Query: 216 DLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R L +PK +DFRA+CFCHKN +D+G++CSVCLSI+C + CSTC + F
Sbjct: 232 PPALRQILAVPKQDKIDFRAACFCHKNIVDIGFVCSVCLSIFCAPVPVCSTCRTKF 287
>gi|383855904|ref|XP_003703450.1| PREDICTED: general transcription factor IIH subunit 3-like
[Megachile rotundata]
Length = 292
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 145/275 (52%), Gaps = 24/275 (8%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++++LD NP + +Q L + F NA L + NQ+ +IA + +
Sbjct: 6 ETSLLIIVLDVNPVQRIVKQETRILTQCLDSTIVFANAHLMQSSNNQLAMIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y +G+ T+ Q L++ +N+ D+ L + SL+SG
Sbjct: 66 LYPCEKPVEIRQIDGQYEKFTMVERTVRQQLQQVINEISMDKPLNGE--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQ-------PRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 176
+L+MALCYI R+ R + + S D QY+ MN F+AQ+ V +D C
Sbjct: 118 ALTMALCYIARLEREKVAGQKLYSRILTITASNDSATQYMNYMNIFFTAQKMGVILDVCS 177
Query: 177 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 236
L Q LQQ ITGG + K QL GL QYLL IF D R+ L LP PV VD+RA+
Sbjct: 178 LD-QELTLLQQGCDITGGNYLKVPQLSGLLQYLLWIFLPDPSIRSKLVLPPPVKVDYRAA 236
Query: 237 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
CFCH+ ID+GY+CSVCLSI+CK C+TC +VF
Sbjct: 237 CFCHQELIDIGYVCSVCLSIFCKFSPICTTCHTVF 271
>gi|195032196|ref|XP_001988455.1| GH10566 [Drosophila grimshawi]
gi|193904455|gb|EDW03322.1| GH10566 [Drosophila grimshawi]
Length = 300
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 153/285 (53%), Gaps = 28/285 (9%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A +K + L+ ++LDTNP + + +Q L V+AF NA L N++ VI+
Sbjct: 7 AANKEAEASIDLLAIVLDTNPTQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVIS 66
Query: 62 TGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF----MNKDEQLGK---QEPEG 114
+++ D++Y GR L + E F +QLG P
Sbjct: 67 CSHHATDFLYPLP---------GRQVEL-RPIDGQYEAFSLVEKTVKQQLGSILMNAPRL 116
Query: 115 RIAC-SLLSGSLSMALCYIQRVFR---SGL-LHPQP---RGSPDGPEQYVAIMNAIFSAQ 166
C SLL+GS+SMALCYI R+ R +G+ +H + GS + QY+ MN F+AQ
Sbjct: 117 SSPCESLLAGSMSMALCYISRLQRNVAAGVKMHSRILVLTGSNECASQYMTYMNVFFTAQ 176
Query: 167 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLP 226
+ + ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP
Sbjct: 177 KLSIVIDACALD-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFMPSPQMRHKLVLP 235
Query: 227 KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
P VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 236 PPPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 280
>gi|449683803|ref|XP_002159513.2| PREDICTED: general transcription factor IIH subunit 3-like [Hydra
magnipapillata]
Length = 291
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 144/277 (51%), Gaps = 26/277 (9%)
Query: 14 SLVVVLLDTNPFFWSS----SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+L+V++LD N +W+S ++ F + + VL F N+ L LN N++ ++ +
Sbjct: 8 NLLVIILDINAAWWASQFQNNNDVFQKCIDSVLVFCNSYLMLNHTNKLALVVCNSEQACF 67
Query: 70 VYDSSSTGNQSVG------NGR---MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
+Y +SS + +G+ + TL + + P SL
Sbjct: 68 LYPNSSKSTSGISIETSQKDGKYELFSEMNETLQCEFKRLFAESVSNMTNRP------SL 121
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQP------RGSPDGPEQYVAIMNAIFSAQRSMVPIDS 174
L+G+L+ ALCYI R+ +GS D QY+ +MN IF+A + + ID
Sbjct: 122 LAGALTKALCYIHSHDRTANGRRTNARILIIKGSSDSSSQYMTVMNCIFAASKKNIVIDC 181
Query: 175 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 234
C L NS F+QQAS ITGGV+ G+ +YLL IF D R L LP +D+R
Sbjct: 182 CAL-QNNSGFMQQASDITGGVYFFIDDFSGMLEYLLWIFLPDPGLREKLNLPTSSQIDYR 240
Query: 235 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
A+CFCHK +D+G++CSVCLSIYC+ + KC+TC + F
Sbjct: 241 AACFCHKQLVDVGFVCSVCLSIYCQFMPKCATCQTRF 277
>gi|195470427|ref|XP_002087508.1| GE15755 [Drosophila yakuba]
gi|194173609|gb|EDW87220.1| GE15755 [Drosophila yakuba]
Length = 299
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 154/284 (54%), Gaps = 26/284 (9%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A SK + L+V++LDTNP + + +Q L V+AF NA L N++ V++
Sbjct: 6 AASKEAESCIDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVS 65
Query: 62 TGYNSCDYVY---DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGR 115
+++ +++Y Q G SL ++ +QLG P
Sbjct: 66 CSHHATNFLYPLPRRQVELRQVDGQYEAFSLVEKTVK---------QQLGSILMNAPRLS 116
Query: 116 IAC-SLLSGSLSMALCYIQRVFRS---GL-LHPQ---PRGSPDGPEQYVAIMNAIFSAQR 167
C SLL+GS+SMALCYI R+ R+ G+ +H + GS + QY+ MN F+AQ+
Sbjct: 117 APCESLLAGSMSMALCYISRLQRNVAPGVKMHSRILVITGSNECASQYMTFMNVFFTAQK 176
Query: 168 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
+ ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP
Sbjct: 177 LGITIDTCALD-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPAPQIRHKLVLPP 235
Query: 228 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
P VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 236 PPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|390602568|gb|EIN11961.1| transcription factor Tfb4 [Punctularia strigosozonata HHB-11173
SS5]
Length = 338
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 149/288 (51%), Gaps = 35/288 (12%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS---------LSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
D + + V++D +P W S+ LS FL+ +LAFLN+ + N + V+
Sbjct: 2 DRAAHLSVVVDLSPPQWLLSAQPGPSNPHPLSLRSFLSQLLAFLNSHIASKPENTLCVLG 61
Query: 62 TG-------YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEG 114
Y+S D+V SS G+ + +P ++ N+ + LG+ E +
Sbjct: 62 AFPGKSGILYSSTDHVSTSSEKGDP---DAYLP-FKVVDAAIIDHITNELDVLGEWEAQE 117
Query: 115 RIACSLLSGSLSMALCYIQRVFRSGLLHPQPRG-----------SPDGPEQYVAIMNAIF 163
A L G+L+ ALCYI R+ + +PR SPD Y+ IMN+IF
Sbjct: 118 STA---LVGALTKALCYINRIMNVSADN-EPRSPSEPRILILSVSPDQSTSYIPIMNSIF 173
Query: 164 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 223
SAQ+ V +D C L S FLQQAS++TGG + + D L QYL+ F R L
Sbjct: 174 SAQKLKVTMDVCQLYGPESVFLQQASHLTGGSYIHLEHRDALLQYLIMSFLPPPSIRRTL 233
Query: 224 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+P +DFRA+CFCHKN +D+G++CSVCLSI+C+ + CSTC + F
Sbjct: 234 SVPTQDKIDFRAACFCHKNIVDVGFVCSVCLSIFCQPVPVCSTCRTKF 281
>gi|195159598|ref|XP_002020665.1| GL15043 [Drosophila persimilis]
gi|194117615|gb|EDW39658.1| GL15043 [Drosophila persimilis]
Length = 298
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/282 (37%), Positives = 153/282 (54%), Gaps = 22/282 (7%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S + L+V++LDTNP + + +Q L V+AF NA L N++ VI+
Sbjct: 6 AASTETESGIDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVIS 65
Query: 62 TGYNSCDYVYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+++ +++Y Q G SL T+ Q L + +LG
Sbjct: 66 CAHHATNFLYPQPRRQVELRQIDGQYEAFSLVEKTVKQQLGSILMNAPRLGS-------P 118
Query: 118 C-SLLSGSLSMALCYIQRV---FRSGL-LHPQP---RGSPDGPEQYVAIMNAIFSAQRSM 169
C SLL+GS++MALCYI R+ +G+ +H + GS + QY+ MN F+AQ+
Sbjct: 119 CESLLAGSMAMALCYISRLHGMLAAGVKMHSRILVLTGSNECSSQYMTFMNVFFTAQKLG 178
Query: 170 VPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 229
+ ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP P
Sbjct: 179 ITIDTCALD-KTLSLLQQGCDITTGQFLKVTQLDGLLQYLLWVFLPAPQMRHKLVLPPPP 237
Query: 230 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 238 KVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|426197233|gb|EKV47160.1| hypothetical protein AGABI2DRAFT_204058 [Agaricus bisporus var.
bisporus H97]
Length = 361
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 140/274 (51%), Gaps = 24/274 (8%)
Query: 18 VLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
V+LD P W S+ L+ FL+HVL FLNA + N N + V + +Y
Sbjct: 6 VVLDLPPAQWHRSARHDPPLALPDFLSHVLVFLNAHIANNAENSLAVFGAFPGTSPLLYS 65
Query: 73 SSST--GNQSVGNGRMPSLCATLLQNLEEFMNKDEQLG-KQEPEGRIACSLLSGSLSMAL 129
S+ + + PS + LG + PE S L G+++ AL
Sbjct: 66 SADPVPARLPIDSNSYPSFVHLDHAVARRVTAVLDSLGTDRAPEP----SALVGAITKAL 121
Query: 130 CYIQRVFRSG-------LLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 177
CY+ R+ S + P PR SPD Y+ IMN++FSAQ+ V ID C +
Sbjct: 122 CYVNRLAISPSSAAPAEHVLPDPRLLILSVSPDLATSYIPIMNSVFSAQKLKVTIDVCQV 181
Query: 178 GAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASC 237
++ FLQQA+++TGG + ++ D L QYL+ F R L +P VDFRA+C
Sbjct: 182 FGPDTVFLQQAAHLTGGSYIHLERRDALLQYLIMAFLPPPPIRKVLAVPTQDKVDFRAAC 241
Query: 238 FCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
FCHKN +D+G++CSVCLSI+C+ + CSTC + F
Sbjct: 242 FCHKNIVDIGFVCSVCLSIFCQPVPVCSTCRTKF 275
>gi|407926572|gb|EKG19539.1| Transcription factor Tfb4 [Macrophomina phaseolina MS6]
Length = 380
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 152/314 (48%), Gaps = 65/314 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ + +L S+ + ++L F+NA L +N NQV V+A+ + ++Y
Sbjct: 20 SLLTIIIDTNPHAWAFLADTLPLSKAIANLLVFINAHLAINSANQVAVLASHSHQATWLY 79
Query: 72 ----------------------------DSSSTGNQSVGNGRMP--SLCATLLQNLEEFM 101
D S T + N P ++ LL NL M
Sbjct: 80 PTPHPPKAKRRNAPNGNKEENGDADGDVDMSDTPSMDDANKYRPFRNVETELLANLRVLM 139
Query: 102 NKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV---------------FRSGLLHPQPR 146
+ ++ + +L++G+L+ AL YI + + P R
Sbjct: 140 ARTSEMDLKAS----TTTLVAGALTTALAYIAKANIKSAPQVGDTQMADLATAADPPAAR 195
Query: 147 GS-----------PDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGV 195
S D QY+ +MNAIF+AQR +PID L A ++ FLQQA TGG+
Sbjct: 196 SSLTSRILVLSVSGDLASQYIPVMNAIFAAQRQRIPIDILKL-AGDTVFLQQACDATGGI 254
Query: 196 HHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLS 255
+ KP +GL QYL+ F D +R L LP VDFRA+CFCH+ +D+GY+CSVCLS
Sbjct: 255 YLKPLAPEGLLQYLMMAFLPDETARKHLVLPSAGEVDFRAACFCHRRVVDIGYVCSVCLS 314
Query: 256 IYCKHL--KKCSTC 267
I+C+ + C TC
Sbjct: 315 IFCEPPADQTCPTC 328
>gi|409080333|gb|EKM80693.1| hypothetical protein AGABI1DRAFT_119282 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 361
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 140/274 (51%), Gaps = 24/274 (8%)
Query: 18 VLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
V+LD P W S+ L+ FL+HVL FLNA + N N + V + +Y
Sbjct: 6 VVLDLPPAQWHRSARHDPPLALPDFLSHVLVFLNAHIANNAENSLAVFGAFPGTSPLLYS 65
Query: 73 SSST--GNQSVGNGRMPSLCATLLQNLEEFMNKDEQLG-KQEPEGRIACSLLSGSLSMAL 129
S+ + + PS + LG + PE S L G+++ AL
Sbjct: 66 SADPVPARLPIDSNSYPSFVHLDHAVARRVTAVLDSLGTDRAPEP----SALVGAITKAL 121
Query: 130 CYIQRVFRSG-------LLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 177
CY+ R+ S + P PR SPD Y+ IMN++FSAQ+ V ID C +
Sbjct: 122 CYVNRLAISPSSAAPAEHVLPDPRLLILSVSPDLATSYIPIMNSVFSAQKLKVTIDVCQV 181
Query: 178 GAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASC 237
++ FLQQA+++TGG + ++ D L QYL+ F R L +P VDFRA+C
Sbjct: 182 FGPDTVFLQQAAHLTGGSYIHLERRDALLQYLIMAFLPPPPIRKVLAVPTQDKVDFRAAC 241
Query: 238 FCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
FCHKN +D+G++CSVCLSI+C+ + CSTC + F
Sbjct: 242 FCHKNIVDIGFVCSVCLSIFCQPVPVCSTCRTKF 275
>gi|430811432|emb|CCJ31073.1| unnamed protein product [Pneumocystis jirovecii]
gi|430812043|emb|CCJ30521.1| unnamed protein product [Pneumocystis jirovecii]
Length = 284
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 144/272 (52%), Gaps = 32/272 (11%)
Query: 10 SDDVS-LVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
DDVS L+VV+LDTNPF W + S + F + L FLNA L+ NQ N + V+A+ N
Sbjct: 18 EDDVSNLLVVILDTNPFGWDALSEYIPFDVAIREFLVFLNAHLSSNQNNDLAVLASHTNF 77
Query: 67 CDYVYDS----SSTGNQSVGNGRMPS-------------LCATLLQNLEEFMNKDEQLGK 109
Y+Y S S ++V + + + NL++ ++K + +
Sbjct: 78 VQYLYPSVQVSSKDNEKAVEENKEDKDFQKSNIYRPFYLMNKQIQDNLKKLIDKANEQDE 137
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRSG---LLHPQP---RGSPDGPEQYVAIMNAIF 163
P +++ GSL MAL Y+ R +S L+ + S D QY+ IMN IF
Sbjct: 138 DTPS-----TMIGGSLCMALAYVNRAMQSASKNRLNARILIISVSSDITFQYIPIMNCIF 192
Query: 164 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 223
AQ+ +PID C +G ++ FLQQAS T G++ + L QYLL IF D R L
Sbjct: 193 GAQKKKIPIDVCKIGG-DTVFLQQASDATKGIYLHLDKPKSLLQYLLMIFLPDQKVRQHL 251
Query: 224 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLS 255
LP + VDFRA+CFCHK +D+G++CSVCLS
Sbjct: 252 VLPFQLNVDFRAACFCHKKILDIGFVCSVCLS 283
>gi|19112324|ref|NP_595532.1| transcription factor TFIIH complex subunit Tfb4
[Schizosaccharomyces pombe 972h-]
gi|62901129|sp|O74366.1|TFB4_SCHPO RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|3417433|emb|CAA20320.1| transcription factor TFIIH complex subunit Tfb4
[Schizosaccharomyces pombe]
Length = 297
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 148/279 (53%), Gaps = 29/279 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+D SL+VV+LD NP W S S + S+ L + FLNA L + N+V V+A+ +
Sbjct: 20 NDTPSLLVVILDANPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKV 79
Query: 68 DYVYDSSSTGNQSVGN----------GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+Y+Y S + Q V + + +L ++ M+ +++ ++
Sbjct: 80 EYLYPSIA-PEQKVAEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSRK------- 131
Query: 118 CSLLSGSLSMALCYIQRV-----FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPI 172
+++SG+LS AL YI +V RS +L G D QY+ MN IF AQ+ +PI
Sbjct: 132 -TMISGALSRALAYINQVQNKNTLRSRILIFSLTG--DVALQYIPTMNCIFCAQKKNIPI 188
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 232
+ C + + FL+QA+ TGG++ K GL QYL+ D + R L P VD
Sbjct: 189 NVCNIEG-GTLFLEQAADATGGIYLKVDNPKGLLQYLMMSLFPDQNLRKHLNTPNQANVD 247
Query: 233 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
FRA+CFCHK +D+G++CSVCLSI+C+ CSTC + F
Sbjct: 248 FRATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTCHTKF 286
>gi|2257568|dbj|BAA21460.1| basic transcription factor 2.35KD subunit [Schizosaccharomyces
pombe]
Length = 298
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 148/279 (53%), Gaps = 29/279 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+D SL+VV+LD NP W S S + S+ L + FLNA L + N+V V+A+ +
Sbjct: 20 NDTPSLLVVILDANPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKV 79
Query: 68 DYVYDSSSTGNQSVGN----------GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+Y+Y S + Q V + + +L ++ M+ +++ ++
Sbjct: 80 EYLYPSIAP-EQKVAEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSRK------- 131
Query: 118 CSLLSGSLSMALCYIQRV-----FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPI 172
+++SG+LS AL YI +V RS +L G D QY+ MN IF AQ+ +PI
Sbjct: 132 -TMISGALSRALAYINQVQNKNTLRSRILIFSLTG--DVALQYIPTMNCIFCAQKKNIPI 188
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 232
+ C + + FL+QA+ TGG++ K GL QYL+ D + R L P VD
Sbjct: 189 NVCNIEG-GTLFLEQAADATGGIYLKVDNPKGLLQYLMMSLFPDQNLRKHLNTPNQANVD 247
Query: 233 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
FRA+CFCHK +D+G++CSVCLSI+C+ CSTC + F
Sbjct: 248 FRATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTCHTKF 286
>gi|198432365|ref|XP_002120803.1| PREDICTED: similar to general transcription factor IIH, polypeptide
3, 34kDa [Ciona intestinalis]
Length = 309
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 151/297 (50%), Gaps = 47/297 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLS----FSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
++ L+VV+ D NP +W SL ++ L +L F+N+ L L N++ +IA+
Sbjct: 4 EEERQLLVVIFDVNPVWWGIKSLQGQAQITKCLDCLLVFVNSYLMLRHDNKLAIIASHST 63
Query: 66 SCDYVY-----------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE- 113
++Y +S +Q+ G+ R E F D+ + + E
Sbjct: 64 KSVFLYPAQESSHSPDPSKASISDQAGGDCR-----------YEHFAKVDDSVTDKFKEL 112
Query: 114 GRIAC--------SLLSGSLSMALCYIQR--VFRSGLLHPQPR-----GSPDGPEQYVAI 158
R C SL++GS+++ALCYI R + G R + D QY++
Sbjct: 113 MRDGCEKNDIRRDSLIAGSMAIALCYIHRMQIESQGNTKLNARILVIKAADDAASQYMSF 172
Query: 159 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 218
MN IF+AQ+ V +D+C LG Q+S LQQA +T G++ K D QYLLT F T+
Sbjct: 173 MNVIFAAQKERVVVDACILG-QDSGLLQQACDMTSGMYLKVPHQDAFLQYLLTAFLTEAE 231
Query: 219 SRN----FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R Q +P VD+RA+CFCH++ +D+G++CSVCLSI+C+ CSTC + F
Sbjct: 232 LRKESLVLAQSSRPREVDYRAACFCHRSLVDVGFVCSVCLSIFCQFSPICSTCETAF 288
>gi|296421687|ref|XP_002840396.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636611|emb|CAZ84587.1| unnamed protein product [Tuber melanosporum]
Length = 357
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 156/297 (52%), Gaps = 49/297 (16%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+V++LDTNP+ WS S++L + L +L FLN + + N+V VIA+ S ++Y
Sbjct: 19 SLLVLILDTNPYAWSTLSATLPLERALASILIFLNVHMAFSHANRVAVIASHTRSARFLY 78
Query: 72 DSSSTGN-------------QSVGNGRMPSLCATLLQ-NLEEFMNK---DEQLGKQEPEG 114
++++ + R L +Q + E M + E + +E
Sbjct: 79 PTTTSTTTAAGGSGGSEDPFRDANKYRQFRLIEDQVQASFAELMRQTTASELVDAKE--- 135
Query: 115 RIACSLLSGSLSMALCYIQRVFR---SGLLHPQPRG-----------------SPDGPEQ 154
++++G+L +AL Y+ R+ R SG + G S D EQ
Sbjct: 136 ----TMMAGALGLALGYVNRLVRVDDSGGVVGGKDGAVGEVTSMNARILVVSVSGDLAEQ 191
Query: 155 YVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFG 214
YV +MN+IF+AQR +PID C + + + FLQQAS T G++ + + + L QYL+ F
Sbjct: 192 YVPVMNSIFAAQRKKIPIDICKVAGE-TVFLQQASDTTRGIYMQLEHPESLLQYLMMCFI 250
Query: 215 TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGS 269
D +R L P V VDFRA+CFCHKN +D+G++CS+CLSI+C + C+TC +
Sbjct: 251 PDTATRRHLVPPTQVNVDFRAACFCHKNVVDIGFVCSICLSIFCTPPEGAICTTCNT 307
>gi|303274264|ref|XP_003056454.1| RNA polymerase II transcription factor B subunit 4 [Micromonas
pusilla CCMP1545]
gi|226462538|gb|EEH59830.1| RNA polymerase II transcription factor B subunit 4 [Micromonas
pusilla CCMP1545]
Length = 296
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 146/277 (52%), Gaps = 24/277 (8%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
L SD S++V+L +TNP WS SF + L +L ++ L+L++ N+VV+IA
Sbjct: 22 LPSDGSSVLVILFETNPLLWSGLGGRLDGKESFDETLRQLLVYMIGFLSLHEQNRVVIIA 81
Query: 62 TGYN--SCDYVYDSSSTGNQSVGN-GRMPSLCATLLQNLEEF---MNKDEQLGKQEPEGR 115
N C Y + ++G + N G LCA ++ NL M D L +
Sbjct: 82 LHSNVEHCMYAIPTLASGENDLTNTGSKSDLCAQVISNLATLAMRMRSDFDLSTKSNMP- 140
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMV 170
L+ +SMALC + R R H PR GS D QY + MNAIFSA+ S V
Sbjct: 141 -----LTTVISMALCCVNRA-RVYKPHCSPRILCILGSQDSSGQYFSGMNAIFSAKNSGV 194
Query: 171 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 230
ID+C LG +S FLQQA+ ITGG + QQ + YLL+ R LQ P+
Sbjct: 195 RIDACLLGYTDSFFLQQAAQITGGSYCMLQQGEKALYYLLSDLPGSESIRAKLQSPRKFC 254
Query: 231 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTC 267
+++A+CFCH+ + +G++CSVCL+I+C+ +KC C
Sbjct: 255 SEYQATCFCHEVNLQVGFVCSVCLTIFCERCRKCLAC 291
>gi|431912136|gb|ELK14274.1| General transcription factor IIH subunit 3 [Pteropus alecto]
Length = 292
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 148/284 (52%), Gaps = 43/284 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L ++ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMDHSNKLAVIASHI 64
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
++Y NGR+ L EF + GK E LL+ +
Sbjct: 65 QESRFLYPGK--------NGRLGDLFGDPSNPPSEFNPSGSKDGKYE--------LLTAA 108
Query: 125 LSMALCYIQRVFRSG---------LLH--------PQP----RGSPDGPEQYVAIMNAIF 163
+ + I+ + +G + H P P + + D QY+ MN IF
Sbjct: 109 NEVIVEEIKDLMTNGPNPVADFVPVCHSQGSSFSSPHPGQVIKAAEDSALQYMNFMNVIF 168
Query: 164 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 223
+AQ+ + ID+C LG+ +S LQQA ITGG++ K Q+ L QYLL +F D R+ L
Sbjct: 169 AAQKQNILIDACVLGS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQL 227
Query: 224 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTC 267
LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC
Sbjct: 228 ILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTC 271
>gi|392570135|gb|EIW63308.1| transcription factor Tfb4 [Trametes versicolor FP-101664 SS1]
Length = 329
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 147/290 (50%), Gaps = 35/290 (12%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + V+LD +P W+ S+ +S FL+ +LAFLNA + N + V
Sbjct: 2 DTPSHLSVILDLSPTQWALSAQSTNPPGISLETFLSQLLAFLNAHIACKDENTLAVFGAL 61
Query: 64 YNSCDYVYDSS-----STGNQSVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+Y S+ S + N P +L AT++++L E + ++ P G +
Sbjct: 62 PGESVLLYSSTGEVTASDDGPTDSNTYRPFKTLDATVMKSLAERLESFGDAAEEAPIGIV 121
Query: 117 ACSLLSGSLSMALCYIQRVF-RSGLLHPQPRG--------------SPDGPEQYVAIMNA 161
C ++ ALCYI R+ + P G SPD Y+ IMN+
Sbjct: 122 GC------MTKALCYINRITSNTTAAGPNEDGPTASIDPRILVLSVSPDQSSTYIPIMNS 175
Query: 162 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 221
IFSAQ+ V ID C + ++ FLQQA+++TGG + + + D L QY++ F R
Sbjct: 176 IFSAQKLKVTIDVCKIFGADNVFLQQAAHLTGGAYVQVDRTDALLQYMMMSFLPPPAIRQ 235
Query: 222 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+ +P VDFRA+CFCHK +++G++CSVCLSI+C+ + CSTC + F
Sbjct: 236 LIAVPTQDRVDFRAACFCHKRIVEIGFVCSVCLSIFCQPVPVCSTCRTKF 285
>gi|395332939|gb|EJF65317.1| transcription factor Tfb4 [Dichomitus squalens LYAD-421 SS1]
Length = 324
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 145/290 (50%), Gaps = 35/290 (12%)
Query: 11 DDVSLVVVLLDTNPFFWS-------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + V++D +P W+ L FL+ +LAFLNA + N + V
Sbjct: 2 DKPSHLSVIVDLSPTQWALCAQSTAPPGLHLQTFLSQLLAFLNAHIACKDENTLAVFGAF 61
Query: 64 YNSCDYVYDSS-----STGNQSVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+Y S+ +T + N P +L +T++ ++ E N + ++EP G +
Sbjct: 62 PGQSVMLYSSTGEIMTATTEATDPNTYRPFKTLDSTVMSSIAERFNSYDVTEEEEPIGLV 121
Query: 117 ACSLLSGSLSMALCYIQRVF----------RSGLLHPQPR-----GSPDGPEQYVAIMNA 161
C L+ ALCYI R + PR SPD Y+ IMN+
Sbjct: 122 GC------LTKALCYINRTISVVSASAQGTEGATISIDPRILVLSVSPDQSSTYIPIMNS 175
Query: 162 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 221
IFSAQ+ V ID C + + FLQQA+++TGG + + ++ D L QY++ F R
Sbjct: 176 IFSAQKLKVTIDVCKVFGAENVFLQQAAHLTGGAYVQIERTDALLQYMMMSFLPPPAIRQ 235
Query: 222 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+ +P VDFRA+CFCHK +++G++CSVCLSI+C+ + CSTC + F
Sbjct: 236 LISVPTQDRVDFRAACFCHKRIVEIGFVCSVCLSIFCQPVPVCSTCRTKF 285
>gi|393217355|gb|EJD02844.1| Tfb4-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 378
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 147/290 (50%), Gaps = 35/290 (12%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSL-------SFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + ++LD +P W SSL SF FL LAFLN+ L L N + V
Sbjct: 2 DRPSHLAIILDLSPTQWHLSSLPKNAYPLSFKSFLAQTLAFLNSHLALKHENTLAVYGAF 61
Query: 64 YNSCDYVYDSSSTGNQSVG------NGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGR 115
+Y S + V N +P + + + + E ++ ++ P
Sbjct: 62 PGKSVLLYSSMDHKPEGVDDSIADPNTYLPFKVVDTAVTKRISEELDAMSDFDEEAP--- 118
Query: 116 IACSLLSGSLSMALCYIQRVFRS---------GLLHPQPR-----GSPDGPEQYVAIMNA 161
C L+ G+L+ ALC+I R+ ++ P+PR SPD Y+ +MN+
Sbjct: 119 --CQLV-GALTKALCHINRLVNPTATSIDSDVPVVPPEPRIVILSVSPDLSTSYIPLMNS 175
Query: 162 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 221
IFSAQ+ V ID C + ++ FLQQA+++TGG + ++ D L Q+LL F R
Sbjct: 176 IFSAQKLKVAIDVCKIYGPDAVFLQQAAHLTGGSYIYLERRDALLQHLLMTFLPTPSIRQ 235
Query: 222 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+ +P +DFRA+CFCHK +D+G++CSVCLSI+C+ + CSTC + F
Sbjct: 236 LIAVPTQDKIDFRAACFCHKTIVDIGFVCSVCLSIFCQPVPVCSTCRTKF 285
>gi|169775241|ref|XP_001822088.1| transcription factor TFIIH complex subunit [Aspergillus oryzae
RIB40]
gi|83769951|dbj|BAE60086.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872974|gb|EIT82049.1| RNA polymerase II transcription initiation protein [Aspergillus
oryzae 3.042]
Length = 376
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 153/322 (47%), Gaps = 72/322 (22%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+ V+LDTNP W+ SL S+ + ++L FLNA L N N+V V+A+ ++Y
Sbjct: 20 ALLTVVLDTNPHAWALLEDSLPLSKAIANILVFLNAHLACNYANEVAVVASHSQKAAWLY 79
Query: 72 --------------------DSSSTGNQSVGNGRMPS------LCATLLQNLEEFMNKDE 105
SS+ N + G G++ + + NL E M
Sbjct: 80 PHENPATKISHDADGDVSMNGSSTNNNTTEGPGQVNKYRPFRIVEEQVTHNLRELM---- 135
Query: 106 QLGKQEPEGRIACS-LLSGSLSMALCYIQRV----------------------------- 135
P+ + S +++G+L++AL +I R
Sbjct: 136 -ASTSGPDVKANNSTMMAGALTLALSHINRRSIAWAEAHGADTAAETSGGGPPSGGHASG 194
Query: 136 ------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQAS 189
+S +L G+ D QY+ IMN+IF+ QR +PID C L ++ FLQQAS
Sbjct: 195 TDTTEGLQSRILIVSVSGASDSAHQYIPIMNSIFACQRLHIPIDVCKLSG-DAVFLQQAS 253
Query: 190 YITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYI 249
T G++ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G++
Sbjct: 254 DATKGIYMSLTEPRGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVDIGFV 313
Query: 250 CSVCLSIYCKHLKK--CSTCGS 269
CS+CLSI+C+ L C TCG+
Sbjct: 314 CSICLSIFCEPLDNGTCLTCGT 335
>gi|393244851|gb|EJD52362.1| transcription factor Tfb4 [Auricularia delicata TFB-10046 SS5]
Length = 338
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 146/289 (50%), Gaps = 42/289 (14%)
Query: 14 SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
S + ++LD +P W + L+ FLT LAF+NA L N +VV+
Sbjct: 5 SHLALILDLSPTQWHLCGTAAEHPLALRDFLTQTLAFVNAHLAARDENSLVVLGALPGKS 64
Query: 68 DYVY----DSSSTGNQSVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLL 121
+Y D S N + N P ++ T+++ + + ++ + ++EP L
Sbjct: 65 VLLYASNEDFSGMANVADANSYQPFKAVDTTVMKRVIDELSSLGDITEEEPTS------L 118
Query: 122 SGSLSMALCYIQRVFRSGLLHPQPRG-------------------SPDGPEQYVAIMNAI 162
G+L+ ALC+I R+ HP P SPD Y+ +MN+I
Sbjct: 119 VGALTKALCHINRI-----THPPPPANPSESPPTPPEARILILSVSPDLSTSYIPLMNSI 173
Query: 163 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 222
FSAQ+ ID C + ++ FLQQA+++TGG + + + L QYL+ F + R+
Sbjct: 174 FSAQKLKAIIDVCKVFGPDAVFLQQAAHLTGGSYVYLLEREALLQYLIMSFLSPPMVRSI 233
Query: 223 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
L +P +DFRA+CFCHKN ID+GY+CSVCLSI+C + CSTC + F
Sbjct: 234 LSVPTQEKIDFRAACFCHKNIIDVGYVCSVCLSIFCTPVAVCSTCRTKF 282
>gi|115387571|ref|XP_001211291.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195375|gb|EAU37075.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 380
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 151/323 (46%), Gaps = 71/323 (21%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SL S + ++L FLNA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTVILDTNPHAWAVLEPSLPLSTAIANILVFLNAHLACNYANEVAVVASHSQTATWLY 79
Query: 72 DSSSTGNQSVG-----------NGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS- 119
+ + ++ NG P A+ + F +EQ+ + E A S
Sbjct: 80 PRETRHDTTIASGTDRDGDIAMNGSAP---ASQVNKYRPFRIVEEQVTQHLRELMEATSG 136
Query: 120 ---------LLSGSLSMALCYIQR------------------------------------ 134
+++G+L++AL +I R
Sbjct: 137 ADVQATTSTMMAGALTLALSHINRRSLAWSEAHGADTAGDGAGASAGGGGGGGSGAGGAG 196
Query: 135 ------VFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQA 188
+S +L GS D QY+ +MN IF+ QR +PID C L ++ FLQQA
Sbjct: 197 RAGGAEGLQSRILIVSVSGSSDSAHQYIPMMNGIFACQRLHIPIDVCKLSG-DAVFLQQA 255
Query: 189 SYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGY 248
S T GV + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G+
Sbjct: 256 SDATKGVFMSLAEPRGLLQYLMMAFLPDQRSRKHLVLPTRVDVDFRAACFCHRRVVDVGF 315
Query: 249 ICSVCLSIYCKHLKK--CSTCGS 269
+CS+CLSI+C+ + C TCG+
Sbjct: 316 VCSICLSIFCEPPENGDCLTCGT 338
>gi|195388531|ref|XP_002052933.1| GJ17829 [Drosophila virilis]
gi|194149390|gb|EDW65088.1| GJ17829 [Drosophila virilis]
Length = 300
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 153/284 (53%), Gaps = 26/284 (9%)
Query: 4 APSKLYSDDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A +K + L+ ++LDTNP + + +Q L V+AF NA L +++ VI+
Sbjct: 7 AANKEAEASIDLLAIVLDTNPSQQIVRQNPQNLTQILEAVIAFGNAHLMQKAQSKLAVIS 66
Query: 62 TGYNSCDYVY---DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGR 115
+++ D++Y Q G SL ++ +QLG P
Sbjct: 67 CSHHATDFLYPLPGRQVELRQIDGQYEAFSLVEKTVK---------QQLGSILMNAPRLS 117
Query: 116 IAC-SLLSGSLSMALCYIQRVFR---SGL-LHPQP---RGSPDGPEQYVAIMNAIFSAQR 167
+C SLL+GS+SMALCYI R+ R +G+ +H + GS + QY+ MN F+AQ+
Sbjct: 118 ASCESLLAGSMSMALCYISRLQRNVAAGVKMHSRILVLTGSNECASQYMTYMNVFFTAQK 177
Query: 168 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
+ ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP
Sbjct: 178 LGIVIDTCALD-KTLSLLQQGCDITNGQFLKVTQLDGLLQYLLWVFLPSPQMRHKLVLPP 236
Query: 228 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 237 TPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 280
>gi|238496129|ref|XP_002379300.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
flavus NRRL3357]
gi|220694180|gb|EED50524.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
flavus NRRL3357]
Length = 367
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 153/322 (47%), Gaps = 72/322 (22%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+ V+LDTNP W+ SL S+ + ++L FLNA L N N+V V+A+ ++Y
Sbjct: 11 ALLTVVLDTNPHAWALLEDSLPLSKAIANILVFLNAHLACNYANEVAVVASHSQKAAWLY 70
Query: 72 --------------------DSSSTGNQSVGNGRMPS------LCATLLQNLEEFMNKDE 105
SS+ N + G G++ + + NL E M
Sbjct: 71 PHENPATKISHDADGDVSMNGSSTNNNTTEGPGQVNKYRPFRIVEEQVTHNLRELM---- 126
Query: 106 QLGKQEPEGRIACS-LLSGSLSMALCYIQRV----------------------------- 135
P+ + S +++G+L++AL +I R
Sbjct: 127 -ASTSGPDVKANNSTMMAGALTLALSHINRRSIAWAEAHGADTAAETSGGGPPSGGHASG 185
Query: 136 ------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQAS 189
+S +L G+ D QY+ IMN+IF+ QR +PID C L ++ FLQQAS
Sbjct: 186 TDTTEGLQSRILIVSVSGASDSAHQYIPIMNSIFACQRLHIPIDVCKLSG-DAVFLQQAS 244
Query: 190 YITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYI 249
T G++ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G++
Sbjct: 245 DATKGIYMSLTEPRGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVDIGFV 304
Query: 250 CSVCLSIYCKHLKK--CSTCGS 269
CS+CLSI+C+ L C TCG+
Sbjct: 305 CSICLSIFCEPLDNGTCLTCGT 326
>gi|357624804|gb|EHJ75440.1| putative transcription factor TFIIH-subunit [Danaus plexippus]
Length = 291
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 144/277 (51%), Gaps = 28/277 (10%)
Query: 12 DVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
D SL+V+++DTNP + + + L V+AF N+ L NQ+ VI ++ +Y
Sbjct: 9 DSSLLVIIVDTNPNQRYITEDPKVLTGCLDAVIAFANSHLMQKSRNQLAVIGCHFHKSEY 68
Query: 70 VYDSSSTG---NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y S Q G + +L ++ M + Q E R SLL+G+++
Sbjct: 69 LYPSPGKPLDVRQIDGQYELFTLVEKTIK-----MRLVNLIKSQPQEERPGESLLAGAMA 123
Query: 127 MALCYIQRVFRSGLLHPQP------------RGSPDGPEQYVAIMNAIFSAQRSMVPIDS 174
M LC+I R+ R QP GS D QY+ MN F+AQ+ V +D
Sbjct: 124 MGLCFIARMRRE-----QPPGLRMVSRMLVVTGSSDTAAQYINYMNVFFTAQKQQVLLDV 178
Query: 175 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 234
C L ++ + LQQ ITGG++ K L+GL QYLL +F + R L LP VD+R
Sbjct: 179 CSLD-KHLSLLQQGCDITGGLYLKVPSLEGLLQYLLWVFLPEASERRELVLPGRGRVDYR 237
Query: 235 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
A+CFCH+ + +GY+CSVCLS++CK C+TC +VF
Sbjct: 238 AACFCHRELLTIGYVCSVCLSVFCKFSPICTTCHTVF 274
>gi|327276109|ref|XP_003222813.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 3-like [Anolis carolinensis]
Length = 360
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 154/288 (53%), Gaps = 34/288 (11%)
Query: 11 DDVSLVVVLLDTNPFFWSS-----SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
D+++L+V+++DTNP +W S L+ S+ L + N+ L +N+ N++ VIA+
Sbjct: 61 DELNLLVIVVDTNPIWWGKQALIGSKLTLSKCLDASMVLGNSHLFMNRNNKLAVIASHIQ 120
Query: 66 SCDYVY---------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ 110
++Y D++ G++ + ++ T+ + +++ M K + Q
Sbjct: 121 ESRFLYPGKRWEIIDIFGEAVDANMYGSKDGKYELLTTVNETIAEEIQDLMTK-SGIKWQ 179
Query: 111 EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-------GSPDGPEQYVAIMNAIF 163
+ E + L L+ AL YI RV ++ + + + D QY+ MN IF
Sbjct: 180 QTE-----TCLYXYLTKALWYIHRVSKTESASQEIKSRILVIKAAEDSALQYMNFMNVIF 234
Query: 164 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 223
+AQ+ + ID+C L + +S LQQA ITGG++ K L QYLL +F D R+ L
Sbjct: 235 AAQKQNILIDACVLES-DSGLLQQACDITGGIYLKVPHKPSLLQYLLWVFLPDHDQRSQL 293
Query: 224 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
LP V VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 294 ILPPRVHVDYRAACFCHRNLIEVGYVCSVCLSIFCNFSPICTTCETAF 341
>gi|326929605|ref|XP_003210949.1| PREDICTED: general transcription factor IIH subunit 3-like
[Meleagris gallopavo]
Length = 290
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 144/268 (53%), Gaps = 32/268 (11%)
Query: 29 SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY--------DSSSTGNQS 80
S + S+ + + N+ L +++ N++ VIA+ ++Y D G S
Sbjct: 11 SLDFTLSKCIDAAMVLGNSHLFMSRTNKLAVIASHTQESRFLYPGKRWASADLLGDGGNS 70
Query: 81 V-------GNGRMPSLCA---TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALC 130
V +G+ L A + + +++ M K + +G+Q +LL+GSL+ ALC
Sbjct: 71 VESNCSGSKDGKYELLTAINDAIAEEIKDLMTKTDMMGQQTE------TLLAGSLAKALC 124
Query: 131 YIQRVFRSGLLHPQPR-------GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSA 183
YI ++ + + + + + D QY+ MN IF+AQ+ + ID+C L + +S
Sbjct: 125 YINKMSKEVKANQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQSILIDACVLDS-DSG 183
Query: 184 FLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNT 243
LQQA ITGG++ K L L QYLL +F D R+ L LP PV VD+RA+CFCH+N
Sbjct: 184 LLQQACDITGGIYLKVPHLPSLLQYLLWVFLPDQEQRSQLVLPPPVHVDYRAACFCHRNL 243
Query: 244 IDMGYICSVCLSIYCKHLKKCSTCGSVF 271
I++GY+CSVCLSI+C CSTC + F
Sbjct: 244 IEIGYVCSVCLSIFCNFSPICSTCETAF 271
>gi|351698565|gb|EHB01484.1| General transcription factor IIH subunit 3, partial [Heterocephalus
glaber]
Length = 315
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 150/301 (49%), Gaps = 48/301 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLN---------------------AI 48
D+++L+V+++DTNP +W SL SQ H + A+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQSLKESQCWDHKCVLPHPAVIGGSHRFCCGHSPTRGGGAL 64
Query: 49 LTLNQLNQVVVIATGYNS--CDYVYDSSSTGNQ----SVGNGRMPSLCA---TLLQNLEE 99
L L Q + G N D+ D S +G+ L A + + +++
Sbjct: 65 FFLVHLQQCRFLYPGKNGRLGDFFGDPGSPSPDYNPSGSKDGKYELLTAANDVIAEEIKD 124
Query: 100 FMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPD 150
M + G+ +LL+GSL+ ALCYI R+ +S +L + + D
Sbjct: 125 LMTTSDIKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAED 176
Query: 151 GPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL 210
QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL
Sbjct: 177 SALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMASLLQYLL 235
Query: 211 TIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSV 270
+F D R L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC +
Sbjct: 236 WVFLPDQDQRAQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETA 295
Query: 271 F 271
F
Sbjct: 296 F 296
>gi|145254849|ref|XP_001398778.1| transcription factor TFIIH complex subunit [Aspergillus niger CBS
513.88]
gi|134084362|emb|CAK48702.1| unnamed protein product [Aspergillus niger]
Length = 379
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 152/319 (47%), Gaps = 64/319 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ + SL S + ++L F+NA L N N+V V+++ + ++Y
Sbjct: 20 SLLTIILDTNPHAWALLNPSLPLSTAIANILVFINAHLACNYANEVAVVSSHTSQATWLY 79
Query: 72 DSS------------STGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ--------LGKQE 111
S G+ S+ + + P T + F +EQ + +
Sbjct: 80 PVEKATTTTTANNLDSDGDISMRSQQPPPSTHTNINKYRPFRIVEEQVSTHLHNLMSQTT 139
Query: 112 PEG--RIACSLLSGSLSMALCYIQR----------------------------------- 134
PE ++++G+L++AL +I R
Sbjct: 140 PETLQSTTSTMMAGALTLALSHINRRTLAWNEAHGGDIDTTNPNDPSSTSSSSHNTKGTA 199
Query: 135 --VFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYIT 192
+S +L S QY+ IMNAIF+ QR +PID C + ++ FLQQAS T
Sbjct: 200 ESTLQSRILILSVSSSTGSAHQYIPIMNAIFACQRLHIPIDVCKVSG-DAVFLQQASDAT 258
Query: 193 GGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSV 252
GV+ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G++CS+
Sbjct: 259 KGVYMALDEPKGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVDVGFVCSI 318
Query: 253 CLSIYCKHLKK--CSTCGS 269
CLSI+C+ L C TCGS
Sbjct: 319 CLSIFCEPLGDGVCLTCGS 337
>gi|195437728|ref|XP_002066792.1| GK24367 [Drosophila willistoni]
gi|194162877|gb|EDW77778.1| GK24367 [Drosophila willistoni]
Length = 303
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 152/279 (54%), Gaps = 20/279 (7%)
Query: 6 SKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
+K + L+V++LDTNP + + +Q L ++AF NA L N++ VI+
Sbjct: 14 AKESESSIDLLVIVLDTNPSQRIVRQNPQNLTQILEAMIAFGNAHLMQKAQNKLAVISCS 73
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIAC-S 119
+++ +++Y G Q R + +E+ + +QLG P C S
Sbjct: 74 HHASNFLYPLP--GRQV--EVRQIDGQYEVFSQVEKTIK--QQLGNILMNAPRLSAPCES 127
Query: 120 LLSGSLSMALCYIQRVFRS---GL-LHPQP---RGSPDGPEQYVAIMNAIFSAQRSMVPI 172
LL+GS+ ALCYI R+ R+ G+ +H + GS + QY+ MN F+AQ+ + I
Sbjct: 128 LLAGSIGRALCYISRLQRNTPPGIKMHSRVLVLTGSNECSSQYMTFMNVFFTAQKLGIVI 187
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 232
D+C L S LQQ IT G K QLDGL QYLL +F R+ L LP P VD
Sbjct: 188 DTCSLENPVS-LLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPSPQMRHKLVLPPPPKVD 246
Query: 233 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC +VF
Sbjct: 247 YRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTVF 285
>gi|195995769|ref|XP_002107753.1| hypothetical protein TRIADDRAFT_51576 [Trichoplax adhaerens]
gi|190588529|gb|EDV28551.1| hypothetical protein TRIADDRAFT_51576 [Trichoplax adhaerens]
Length = 276
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 151/273 (55%), Gaps = 31/273 (11%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+++++DTNP W ++ + F++++ +++ ++N+ L ++ N + VIA+ N Y+Y
Sbjct: 9 NLLILVIDTNPLAWLPFAAEMDFTRYIENIVVYINSHLMMDHRNSIAVIASHVNKSCYLY 68
Query: 72 -----------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKD--EQLGKQEPEGRIAC 118
+S+ST N + +GR L + + + E K+ +++ + +
Sbjct: 69 SPHMDNWIKNTNSNSTVNIA-KDGRHEEL--SHINYIIETRVKELVQEMATADIHNHVDQ 125
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 178
L + + + + + +PD QY+ IMN IF+AQ+ VPID+C +
Sbjct: 126 DLRNKGQAKSRILVIKC------------TPDTSFQYLPIMNCIFTAQKYNVPIDACVI- 172
Query: 179 AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCF 238
++S FLQQA ITGG++ K Q GL QYLLT F + R L LP VD+RA+CF
Sbjct: 173 EKDSGFLQQACDITGGIYLKLQSPSGLLQYLLTAFLPNQSMRETLILPPKAKVDYRAACF 232
Query: 239 CHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
CH+ I++GYICSVCLSI CK + C TC + F
Sbjct: 233 CHRELIEIGYICSVCLSISCKFVPVCPTCQTHF 265
>gi|350630603|gb|EHA18975.1| hypothetical protein ASPNIDRAFT_42792 [Aspergillus niger ATCC 1015]
Length = 380
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 153/320 (47%), Gaps = 65/320 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ + SL S + ++L F+NA L N N+V V+++ + ++Y
Sbjct: 20 SLLTIILDTNPHAWALLNPSLPLSTAIANILVFINAHLACNYANEVAVVSSHTSQATWLY 79
Query: 72 -------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ--------LGKQ 110
+ S G+ S+ + + P T + F +EQ + +
Sbjct: 80 PVEKAATTTTAANNLDSDGDISMRSQQPPPSTHTNVNKYRPFRIVEEQVSTHLHNLMSQT 139
Query: 111 EPEG--RIACSLLSGSLSMALCYIQR---------------------------------- 134
PE ++++G+L++AL +I R
Sbjct: 140 TPETLQSTTSTMMAGALTLALSHINRRTLAWNEAHGGDIDTTNPNDPSSSSSSSHNTKGT 199
Query: 135 ---VFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYI 191
+S +L S QY+ IMNAIF+ QR +PID C + ++ FLQQAS
Sbjct: 200 AESTLQSRILILSVSSSTGSAHQYIPIMNAIFACQRLHIPIDVCKVSG-DAVFLQQASDA 258
Query: 192 TGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICS 251
T GV+ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G++CS
Sbjct: 259 TKGVYMALDEPKGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVDVGFVCS 318
Query: 252 VCLSIYCKHLKK--CSTCGS 269
+CLSI+C+ L C TCGS
Sbjct: 319 ICLSIFCEPLGDGVCLTCGS 338
>gi|345497965|ref|XP_001603853.2| PREDICTED: general transcription factor IIH subunit 3-like [Nasonia
vitripennis]
Length = 295
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 143/276 (51%), Gaps = 23/276 (8%)
Query: 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
D SL+V++LD NP + +Q L + F NA L N + ++A ++Y
Sbjct: 6 DRSLLVIILDINPMQKLVKQV-LTQCLDSTIVFSNAHLMQTAGNSLAIMACHSQGAQFLY 64
Query: 72 DSSSTGNQSVGNG---RMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMA 128
+ +G + L T+ Q + E + + K E SL+SG+LSMA
Sbjct: 65 PQEKMPDVRQFDGQYEKFTQLERTVRQQIHEMVGEMSMDRKGNEE-----SLISGALSMA 119
Query: 129 LCYIQRVFRSGLL--HPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 181
LCYI R+ R H PR S D QY+ MN F+AQ+ V +D C L +
Sbjct: 120 LCYIARMEREKYAGEHLHPRILVITASHDSATQYMNYMNIFFTAQKMGVMLDVCSLDHEL 179
Query: 182 SAFLQQASYITGGVHHK-PQQ-----LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA 235
+ LQQ +TGG + K PQQ L GL QYLL +F D R+ L LP PV VD+RA
Sbjct: 180 T-LLQQGCDLTGGNYLKIPQQSGQPPLAGLLQYLLWVFLPDPAVRSKLVLPPPVKVDYRA 238
Query: 236 SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+CFCH+ +D G++CSVCLSI+CK C+TC +VF
Sbjct: 239 ACFCHQELVDTGFVCSVCLSIFCKFSPICTTCHTVF 274
>gi|255953875|ref|XP_002567690.1| Pc21g06450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589401|emb|CAP95542.1| Pc21g06450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 374
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 155/320 (48%), Gaps = 69/320 (21%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ SL S+ + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVIDTNPHAWAVLEDSLPLSKAIANILVFINAHLACNYANEVAVVASHSQKAAWLY 79
Query: 72 DSSST---------GNQSVGNGRMPSLCAT------------LLQNLEEFMNKDEQLGKQ 110
S S G+ ++ + T + +NL+E M D G
Sbjct: 80 PSHSEPQYRPADHDGDVTMNGTSDTTTPKTNKYRPFRIVEEQVTRNLKELM--DSTTG-D 136
Query: 111 EPEGRIACSLLSGSLSMALCYIQRV----------------------------------- 135
+ G ++ ++L+G+L++AL +I R
Sbjct: 137 DLRGNMS-TMLAGALTLALSHINRRTLAWAEEHGGANTEDAAADGNGGGTTSTNRYSASN 195
Query: 136 ----FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYI 191
+S +L GS D QY+ +MN+IF+ QR +PID C L ++ FLQQAS
Sbjct: 196 EDERLQSRILVVSVSGSTDAAHQYIPVMNSIFACQRLSIPIDVCKLSG-DAVFLQQASDA 254
Query: 192 TGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICS 251
T GV+ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G++CS
Sbjct: 255 TKGVYMALAEPRGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVDVGFVCS 314
Query: 252 VCLSIYCKHLK--KCSTCGS 269
+CLSI+C+ C TCGS
Sbjct: 315 ICLSIFCEPPPGGDCMTCGS 334
>gi|427787947|gb|JAA59425.1| Putative transcription factor tfb4 [Rhipicephalus pulchellus]
Length = 293
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/275 (36%), Positives = 154/275 (56%), Gaps = 21/275 (7%)
Query: 11 DDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D+ SL+V ++DTNP + S+FL F N+ L LN N++ VIA +
Sbjct: 5 DEGSLLVTIIDTNPCASLLQNEEGIVSRFLDAATVFCNSHLMLNPCNRLAVIACHSHKSS 64
Query: 69 YVYDSS--STGNQSVGNGR---MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
+VY + ST + +G+ + + + + ++E ++ D+ E +++ +LL+G
Sbjct: 65 FVYPKALPSTQDTVSVDGQYELFSEVTSAIKEGVKELVSSDKG------ESQVSETLLTG 118
Query: 124 SLSMALCYIQRVFR--SGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 176
LS+ALCYI R+ + +G R S + QY+ MN F+AQ+ V ID+C
Sbjct: 119 GLSLALCYINRIEKETAGQKKIASRILVLSASGESASQYLNFMNVFFTAQKKNVIIDACV 178
Query: 177 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 236
L ++S LQQ ITGG + K GL +YLL +F D +R++L P PV VD+RA+
Sbjct: 179 L-EKDSGLLQQGCDITGGKYMKVPNHTGLLEYLLWLFLPDKATRDYLVFPPPVHVDYRAA 237
Query: 237 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
CFCH+N I++GY+CSVCLSI+C CSTC + F
Sbjct: 238 CFCHRNLIEIGYVCSVCLSIFCAFSPICSTCQTAF 272
>gi|449476600|ref|XP_002189370.2| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Taeniopygia guttata]
gi|449476604|ref|XP_004176463.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Taeniopygia guttata]
Length = 267
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 139/251 (55%), Gaps = 32/251 (12%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY------------------DSSSTGNQSVGNGRMP 87
N+ L +N+ N++ VIA+ ++Y +S+ +G++ +
Sbjct: 5 NSHLLMNRTNKLAVIASHTQESRFLYPGKRWAAADPFGEGGPSMESNCSGSKDGKYELLT 64
Query: 88 SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR- 146
++ + + +++ M K + G+Q +LL+GSL+ ALCYI ++ + ++ + +
Sbjct: 65 AINDAIAEEIKDLMTKTDMKGQQTE------TLLAGSLAKALCYINKMGKDLKVNQEIKS 118
Query: 147 ------GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 200
+ D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K
Sbjct: 119 RILVIKAAEDSALQYMNFMNVIFAAQKQSILIDACVLDS-DSGLLQQACDITGGIYLKVP 177
Query: 201 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 260
+ L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 178 HMPSLLQYLLWVFLPDQEQRSQLVLPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNF 237
Query: 261 LKKCSTCGSVF 271
CSTC + F
Sbjct: 238 SPICSTCETAF 248
>gi|409045010|gb|EKM54491.1| hypothetical protein PHACADRAFT_258371 [Phanerochaete carnosa
HHB-10118-sp]
Length = 360
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 151/290 (52%), Gaps = 35/290 (12%)
Query: 11 DDVSLVVVLLDTNPFFW-------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D+ S + V+LD +P W + ++ L+H+LAFLNA + N + +
Sbjct: 2 DNASHLGVVLDLSPKQWHLAAQPSNPHPITLVASLSHLLAFLNAHIACKDENSLALFGAL 61
Query: 64 YNSCDYVYDSSSTGNQ-----SVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+Y S+ N+ + N P + +T+++++ +++ E LG+ E E I
Sbjct: 62 PGKSVMLYSSTMPVNEEEIQPADANTYRPFKVMDSTIMKHI---VSEVEALGEPEVEEPI 118
Query: 117 ACSLLSGSLSMALCYIQRVF--------RSGLLH--PQPR-----GSPDGPEQYVAIMNA 161
G+L+ A+CYI RV R+ L P PR SPD Y+ +MN
Sbjct: 119 G---FVGALTKAMCYINRVTNGSTSSTSRNDDLATLPDPRILVISVSPDQSSSYIPVMNL 175
Query: 162 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 221
IFSAQ+ V ID C + S FLQQA+++TGG + + D + QYL+ F R
Sbjct: 176 IFSAQKLKVTIDVCKIFGGESVFLQQAAHLTGGSYIDIDRPDAILQYLMMSFLPPPGLRQ 235
Query: 222 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+ +P +DFRA+CFCHKN +D+G++CSVCLSI+C+ + CSTC + F
Sbjct: 236 LISVPTQDKIDFRAACFCHKNIVDIGFVCSVCLSIFCQPVPVCSTCRTKF 285
>gi|297693367|ref|XP_002823992.1| PREDICTED: general transcription factor IIH subunit 3 [Pongo
abelii]
Length = 318
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 151/288 (52%), Gaps = 35/288 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQ--------FLTH---VLAFLNAILTLNQLNQVV 58
D+++L+V+++D NP +W +L SQ TH + + + ++ +
Sbjct: 21 EDELNLLVIVVDANPIWWGKQALKESQECMCTPLQHFTHNNPPPSVFPPLFRKHWNHRFL 80
Query: 59 VIATGYNSCDYVYDSSS------TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEP 112
D+ D + +G++ + S +++ +++ M K + G+
Sbjct: 81 YPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTE 140
Query: 113 EGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAIF 163
+LL+GSL+ ALCYI R+ +S +L + + D QY+ MN IF
Sbjct: 141 ------TLLAGSLAKALCYIHRMNKEIKDNQEMKSRIL--VIKAAEDSALQYMNFMNVIF 192
Query: 164 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 223
+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L
Sbjct: 193 AAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQL 251
Query: 224 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 252 TLPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 299
>gi|195118052|ref|XP_002003554.1| GI21952 [Drosophila mojavensis]
gi|193914129|gb|EDW12996.1| GI21952 [Drosophila mojavensis]
Length = 299
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 148/276 (53%), Gaps = 28/276 (10%)
Query: 13 VSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
+ L+ ++LDTNP + + +Q L V+AF NA L N++ V++ + + +++
Sbjct: 16 IDLLAIVLDTNPSQLIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVLSCSHYTTEFL 75
Query: 71 YDSSSTGNQSVGNGRMPSLCATLLQNLEEF----MNKDEQLGK---QEPEGRIAC-SLLS 122
+ GR L + E F +QLG P C SLL+
Sbjct: 76 FPLP---------GRQVEL-RQIDAQYEAFSLVEKTVKQQLGSILMNAPRLSAPCESLLA 125
Query: 123 GSLSMALCYIQRVFR---SGL-LHPQP---RGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 175
GS+SMALCYI R+ R +G+ +H + GS + QY+ MN F+AQ+ + +D+C
Sbjct: 126 GSMSMALCYISRLQRNVPAGVKMHSRILVITGSNECASQYMTFMNVFFTAQKLGIVVDTC 185
Query: 176 YLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA 235
L + + LQQ IT G K QLDGL QYLL +F R+ L LP VD+RA
Sbjct: 186 ALD-KTLSLLQQGCDITNGQFLKVNQLDGLLQYLLWVFLPSPQMRHKLVLPPTPKVDYRA 244
Query: 236 SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
SCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 245 SCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 280
>gi|452838611|gb|EME40551.1| hypothetical protein DOTSEDRAFT_136966 [Dothistroma septosporum
NZE10]
Length = 379
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/332 (32%), Positives = 159/332 (47%), Gaps = 80/332 (24%)
Query: 10 SDDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
S+ SL+ ++LDTNP W+ SL S+ + +L F+NA L ++ N+V VIA+
Sbjct: 16 SEPPSLLTIILDTNPHAWALHEGSLPLSKAVASLLVFINAHLAIHYGNKVAVIASHAERA 75
Query: 68 DYVY--------DSSSTGNQSVGNG---------RMPS----------LCATLLQNLEEF 100
+++Y SS+T + +GNG R P + L NL +
Sbjct: 76 EFLYPAPATAKPHSSATDDVDMGNGDALVNGGPVRPPDDANKYRPFAHIEHALTHNLRDM 135
Query: 101 MNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV------------------------- 135
M++ P ++L+G+L+MAL YI +
Sbjct: 136 MDRTSPAALSTPS-----TMLAGALTMALTYISKQSAALPTANSSAQFNYSDPSAVAGGS 190
Query: 136 -------------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 182
RS +L G D +QY++IMNAIF+ QR VPID L A ++
Sbjct: 191 DLTADGSRKKHHGLRSRILILSVSG--DLADQYISIMNAIFACQRMSVPIDILKL-AGDT 247
Query: 183 AFLQQASYITGGVH--HKPQQLDGLFQYLLTIFGTDLHSRNFLQLP-KPVGVDFRASCFC 239
FLQQA+ TGGV+ + G QYL+ + D +R L +P + GVDFRA+CFC
Sbjct: 248 VFLQQAADATGGVYVALDEKTRAGFLQYLMFAYLPDQTARAHLIMPGEGEGVDFRAACFC 307
Query: 240 HKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 269
H+ +D GY+CS+CLSI+C+ H C TCGS
Sbjct: 308 HRKVVDTGYVCSICLSIFCEPLHDGTCLTCGS 339
>gi|353240140|emb|CCA72023.1| related to TFIIH basal transcription factor complex p34 subunit
[Piriformospora indica DSM 11827]
Length = 355
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 144/284 (50%), Gaps = 26/284 (9%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
++ S + V+LD +P W SS LS + FL + FLNA L N + V
Sbjct: 2 ENASHLSVILDLSPSQWYQSSQTSGDKHPLSLAHFLPQLFVFLNAHLASQHENTLTVFGA 61
Query: 63 GYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLS 122
+Y S+ T Q+ + T+ + + +N++ + ++ E IA L
Sbjct: 62 FPGKSSMLYSSNETYIQADADSNTFQPFKTMNSVIAQRLNEELESLPEDAEAPIA---LV 118
Query: 123 GSLSMALCYI-QRVFRSGLLH---------PQPR-----GSPDGPEQYVAIMNAIFSAQR 167
G+L+ +LC I +R S L+ P PR SPD Y+ IMN+IF AQ+
Sbjct: 119 GALTKSLCTINRRSHPSDTLNATSPNPSKLPTPRLLVISVSPDLSASYIPIMNSIFCAQK 178
Query: 168 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
+ ID C + ++ FLQQA+++TGG + + D + QYL+T F + R + +P
Sbjct: 179 LKLSIDVCKIFGPDNVFLQQAAHLTGGSYISIDRRDSILQYLMTTFLSPPAVRRLMAVPT 238
Query: 228 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+D RA+CFCHK +D+G+ICS+CLSI+CK CSTC F
Sbjct: 239 EDRIDLRAACFCHKQIVDIGFICSICLSIFCKPTPVCSTCRVKF 282
>gi|70997489|ref|XP_753492.1| transcription factor TFIIH subunit Tfb4 [Aspergillus fumigatus
Af293]
gi|66851128|gb|EAL91454.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
fumigatus Af293]
gi|159126779|gb|EDP51895.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
fumigatus A1163]
Length = 387
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 149/325 (45%), Gaps = 70/325 (21%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLEDSLPLSTAIANILVFVNAHLACNYANEVAVVASHSQKATWLY 79
Query: 72 ----------DSSSTGNQSVGNGRMPSLCATL--------LQNLEEFMNKDEQLGKQEPE 113
+S TG G+ M A + F +EQ+ + E
Sbjct: 80 PCETKEDNGKSTSKTGRDEDGDVAMNGSGAGAGAGFAAAQVNKYRPFRIVEEQVTRNLRE 139
Query: 114 ----------GRIACSLLSGSLSMALCYIQRV---------------------------- 135
++++G+L++AL +I R
Sbjct: 140 LMDSTSGADVAATTSTMMAGALTLALSHINRRSIAWADAHGGTAAGPPGAVEAGSSGAGR 199
Query: 136 ---------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQ 186
+S +L GS D QY+ IMN IF+ QR +PID C L ++ FLQ
Sbjct: 200 AGADTGAEGLQSRILIISVSGSTDSAHQYIPIMNCIFACQRLHIPIDVCKLSG-DAVFLQ 258
Query: 187 QASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDM 246
QAS T GV+ + GL QYL+ F D SR L +P V VDFRA+CFCH+ +D+
Sbjct: 259 QASDATKGVYMSLSEPRGLLQYLMMAFLPDQRSRRHLVIPTRVDVDFRAACFCHRRVVDI 318
Query: 247 GYICSVCLSIYCKHLKK--CSTCGS 269
G++CS+CLSI+C+ + C TCG+
Sbjct: 319 GFVCSICLSIFCEPPENGDCLTCGT 343
>gi|281343811|gb|EFB19395.1| hypothetical protein PANDA_000941 [Ailuropoda melanoleuca]
Length = 278
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 144/268 (53%), Gaps = 37/268 (13%)
Query: 32 LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSS---------TGNQSV- 81
+ S+ + V+ N+ L +N+ N++ VIA+ ++Y + GN S
Sbjct: 2 FTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPSSE 61
Query: 82 ------GNGRMPSLCAT---LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYI 132
+G+ A + + +++ M K E G+ +LL+GSL+ ALCYI
Sbjct: 62 FSPSGSKDGKYELFTAANEIIAEEIKDLMTKSEIKGQHTE------TLLAGSLAKALCYI 115
Query: 133 QRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSA 183
R+ +S +L + + D QY+ +MN IF+AQ+ + ID+C L + +S
Sbjct: 116 HRMNKEVKDNQEMKSRIL--VIKAAEDSALQYMNLMNVIFAAQKQNILIDACVLDS-DSG 172
Query: 184 FLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNT 243
LQQA ITGG++ K Q+ L QYLL +F D R+ L LP P+ VD+RA+CFCH+N
Sbjct: 173 LLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRAACFCHRNL 232
Query: 244 IDMGYICSVCLSIYCKHLKKCSTCGSVF 271
I++GY+CSVCLSI+C C+TC + F
Sbjct: 233 IEIGYVCSVCLSIFCNFSPICTTCETAF 260
>gi|119479015|ref|XP_001259536.1| transcription factor TFIIH subunit Tfb4, putative [Neosartorya
fischeri NRRL 181]
gi|119407690|gb|EAW17639.1| transcription factor TFIIH subunit Tfb4, putative [Neosartorya
fischeri NRRL 181]
Length = 385
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 149/325 (45%), Gaps = 70/325 (21%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLKDSLPLSTAIANILVFVNAHLACNYANEVAVVASHSQKATWLY 79
Query: 72 ----------DSSSTGNQSVGNGRMPSLCATL--------LQNLEEFMNKDEQLGKQEPE 113
+S TG G+ M A + F +EQ+ + E
Sbjct: 80 PRETKEDNGKSNSKTGRDEDGDVAMNGSGAGAGAGSAAAQVNKYRPFRIVEEQVTRNLRE 139
Query: 114 ----------GRIACSLLSGSLSMALCYIQRV---------------------------- 135
++++G+L++AL +I R
Sbjct: 140 LMDSTSGADVAATTSTMMAGALTLALSHINRRSIAWADAHGGTAAGPPGAVEAGSSGAGR 199
Query: 136 ---------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQ 186
+S +L GS D QY+ IMN IF+ QR +PID C L ++ FLQ
Sbjct: 200 AGTDTGAEGLQSRILIISVSGSTDSAHQYIPIMNCIFACQRLHIPIDVCKLSG-DAVFLQ 258
Query: 187 QASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDM 246
QAS T GV+ + GL QYL+ F D SR L +P V VDFRA+CFCH+ +D+
Sbjct: 259 QASDATKGVYMSLSEPRGLLQYLMMAFLPDQRSRRHLVIPTRVDVDFRAACFCHRRVVDI 318
Query: 247 GYICSVCLSIYCKHLKK--CSTCGS 269
G++CS+CLSI+C+ + C TCG+
Sbjct: 319 GFVCSICLSIFCEPPENGDCLTCGT 343
>gi|332840758|ref|XP_003314057.1| PREDICTED: general transcription factor IIH subunit 3 [Pan
troglodytes]
gi|397481836|ref|XP_003812143.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Pan paniscus]
Length = 267
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 24/247 (9%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQ 95
N+ L +N+ N++ VIA+ ++Y + G+ G +P + LL
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNLPEFNPSGSKDGKYELLT 64
Query: 96 NLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQ 144
+ E + ++ + + K + +G+ +LL+GSL+ ALCYI R+ +S +L
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRIL--V 122
Query: 145 PRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG 204
+ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+
Sbjct: 123 IKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPS 181
Query: 205 LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKC 264
L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C
Sbjct: 182 LLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPIC 241
Query: 265 STCGSVF 271
+TC + F
Sbjct: 242 TTCETAF 248
>gi|342873217|gb|EGU75428.1| hypothetical protein FOXB_14053 [Fusarium oxysporum Fo5176]
Length = 358
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 149/303 (49%), Gaps = 54/303 (17%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+S + L S+ + ++L F+NA L + NQV +IA + +++Y
Sbjct: 20 SLLTVVLDTNPRAWASLNNVLPLSRAIANILVFVNAHLAFSNANQVALIAAHVDRAEWLY 79
Query: 72 -----------------DSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNKDEQLGKQE 111
D+S T Q+ N + P A +L + + M++ +E
Sbjct: 80 PTPPKPSRDASGDVAMNDASQTQTQTSAN-KFPQFAQIEAAVLAAIRKLMDQ-----TKE 133
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFR----------------SGLLHPQPRG-------S 148
+ + +SG+L++ALC+I + + S P RG S
Sbjct: 134 EDLSATTTQISGALTLALCHINKAAQALCAPTANLEDSHKGSSNTAPPTVRGRILVISVS 193
Query: 149 PDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQY 208
P QY+ MNA+F+A + V ID+ L + + FLQQA Y TGG + GL Y
Sbjct: 194 DSEPSQYIPTMNAVFAAGHTQVAIDTLSLTGEPT-FLQQACYNTGGTYLAATHPQGLLNY 252
Query: 209 LLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK--KCST 266
L+ D +R L P VDFRA+CFCH +D G++CS+CLSI+C+ + +C T
Sbjct: 253 LMFGLIADTEAREALIAPTHDTVDFRAACFCHGRVVDTGFVCSICLSIFCETPENSECFT 312
Query: 267 CGS 269
CG+
Sbjct: 313 CGT 315
>gi|295670289|ref|XP_002795692.1| RNA polymerase II transcription factor B subunit 4
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226284777|gb|EEH40343.1| RNA polymerase II transcription factor B subunit 4
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 422
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 162/353 (45%), Gaps = 93/353 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP+ W+ S+L S + ++L F+NA L N N+V V+A+ N ++Y
Sbjct: 33 SLLTVILDTNPYAWALLESTLPLSAAIANLLVFINAHLACNYANKVAVVASHCNHAAWLY 92
Query: 72 DSSSTGNQS-------------VGNGRMPSL---------CATLLQNLEEFMNKDEQLGK 109
+ ST + S NG+ PS + L F+ +EQL +
Sbjct: 93 PTPSTPSISRSKAIQLDADGDITMNGQ-PSTEPERENQQQSQSPLNKYRPFLLVEEQLTR 151
Query: 110 Q-------EPEGRIACS---LLSGSLSMALCYIQR-----VFRSGLLHPQPRGSPDGP-- 152
P + + +L+G+L++AL +I R G +P P S GP
Sbjct: 152 NLHCILSATPPSAVTSTTSTMLAGALTLALSHINRESIAYAEAHGAANPDPTSSTTGPAT 211
Query: 153 ----------------------------------------------EQYVAIMNAIFSAQ 166
+ Y+ IMN+IF+ Q
Sbjct: 212 STASGLPPPPNSTTTDPASAVANHLNPTALQSRILIISLSNTTHSAQHYIPIMNSIFACQ 271
Query: 167 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ-QLDGLFQYLLTIFGTDLHSRNFLQL 225
R +PID L A ++AFLQQAS TGG++ G QYL+ F D +R L L
Sbjct: 272 RLHIPIDIIKL-AGDAAFLQQASDATGGIYIPINTHPAGFLQYLMLGFLPDQRARAHLIL 330
Query: 226 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK---KCSTCGSVFGQAQ 275
P V VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C TCG+ G A+
Sbjct: 331 PSRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPLGGEGECLTCGTRLGMAE 383
>gi|242764012|ref|XP_002340688.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723884|gb|EED23301.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 380
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 153/321 (47%), Gaps = 66/321 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LD NP W+ L FS+ L ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLAIVLDVNPHAWALLEDQLPFSKALANLLVFINAHLAFNYTNEVAVVASHSQRAAWLY 79
Query: 72 DS------SSTGNQSV-GNGRMPSLCA-------TLLQN--------LEE--FMNKDEQL 107
+ +ST Q G+ M A T QN +EE N E L
Sbjct: 80 PTHSQQQKTSTNRQDADGDIEMNGQEAHNIHSSRTSTQNNMYRPFRVVEEQVLENVRELL 139
Query: 108 GKQEPEGRIACS-LLSGSLSMALCYIQRV------------------------------- 135
+ A S +L+G+L++AL +I R
Sbjct: 140 ASTDASDVSATSTMLAGALTLALSHINRRTMTWTETHGNSSVDTANAATGSSSAAAVSGG 199
Query: 136 -----FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASY 190
+S +L S D QY+ IMN+IF+ QR +PID C L ++ FLQQAS
Sbjct: 200 NVSLGLQSRILIVSVSSSTDSAHQYIPIMNSIFACQRLHIPIDVCKLSG-DAVFLQQASD 258
Query: 191 ITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYIC 250
T GV+ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +++G++C
Sbjct: 259 ATRGVYMSLTEPRGLLQYLMMAFLPDQRSRKHLVLPSRVDVDFRAACFCHRRVVNIGFVC 318
Query: 251 SVCLSIYCKHLKK--CSTCGS 269
S+CLSI+C+ + C TCG+
Sbjct: 319 SICLSIFCEPPENGDCLTCGT 339
>gi|119618833|gb|EAW98427.1| general transcription factor IIH, polypeptide 3, 34kDa, isoform
CRA_b [Homo sapiens]
Length = 274
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 142/260 (54%), Gaps = 36/260 (13%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY------------------DSSSTGNQSVGNGRMP 87
N+ L +N+ N++ VIA+ ++Y + + +G++ +
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 88 SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRS 138
S +++ +++ M K + G+ +LL+GSL+ ALCYI R+ +S
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKS 118
Query: 139 GLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK 198
+L + + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K
Sbjct: 119 RIL--VIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLK 175
Query: 199 PQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC 258
Q+ L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 176 VPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFC 235
Query: 259 KHLKKCSTCGSVFGQAQTQS 278
C+TC + + +T+S
Sbjct: 236 NFSPICTTCDAESQEKETES 255
>gi|392593946|gb|EIW83271.1| transcription factor Tfb4 [Coniophora puteana RWD-64-598 SS2]
Length = 327
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 143/287 (49%), Gaps = 32/287 (11%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
+ S + V++D +P W S+ LS FL+ +LAFLN + N + V
Sbjct: 2 EKASHLSVIVDLSPTQWHLSAQPSNPYPLSIQSFLSQLLAFLNTHVAAKHENTLAVYGAL 61
Query: 64 YNSCDYVYDSSSTGNQ----SVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+Y SS + S N P + AT++ + + + ++ P
Sbjct: 62 PGKSVLLYSSSDPAPENAPASDANAFTPFKLVDATVVDRIMQEFEAVSEAEEEAP----- 116
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLH--------PQPR-----GSPDGPEQYVAIMNAIFS 164
CSL+S L+ ALCYI R+ P PR SPD Y+ IMN IFS
Sbjct: 117 CSLVSA-LAKALCYINRITHPSTSAGPEDPNELPDPRILILSVSPDLSSSYIPIMNCIFS 175
Query: 165 AQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 224
AQ+ V ID C + + FLQQA+++T G + ++ D L QYL+ F R L
Sbjct: 176 AQKLKVTIDVCKVYGPETVFLQQAAHLTEGSYIHLERRDALLQYLVMSFLAPPSVRGVLA 235
Query: 225 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+P+ +DFRA+CFCHKN +D+G++CSVCLSI+C+ + CSTC + F
Sbjct: 236 VPRQERIDFRAACFCHKNIVDIGFVCSVCLSIFCQPVPVCSTCRTKF 282
>gi|406863689|gb|EKD16736.1| hypothetical protein MBM_05205 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 357
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 154/303 (50%), Gaps = 53/303 (17%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+VV++DTNP W+ S +L S+ + ++L F+NA L +N NQV ++A+ + ++Y
Sbjct: 20 ALLVVVIDTNPHAWALLSPTLPLSKAIANILVFINAHLAVNNANQVAIVASHCHRAAWLY 79
Query: 72 ---------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
D +++ N N P L++++ +N +L E +
Sbjct: 80 PHPASTSSSEDVEMSDDAASSNIDNPNKYRPF---ALVEDI--LLNSLRELIATTTESDV 134
Query: 117 ACSL---LSGSLSMALCYIQRVFR--SGL-LHPQPRGSP--------------------- 149
A + ++G+L++AL YI + + SG+ +P +P
Sbjct: 135 ATTTSTQMAGALTLALSYIHKATQQFSGIDTESKPATAPSTENADTILGLQSRILVVSVS 194
Query: 150 -DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQY 208
D QY+ IMN F+AQR +PID L A ++ FLQQAS T GV+ + + GL QY
Sbjct: 195 GDLAHQYIPIMNTTFAAQRLRIPIDILKL-AGDTVFLQQASDATKGVYMQLRNPQGLLQY 253
Query: 209 LLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--KHLKKCST 266
L+ F D +R L P VDFRA+CFCH+ +D+GY+CS+CLSI+C C T
Sbjct: 254 LMMAFLPDQVARKHLVPPTQEVVDFRAACFCHRKVVDIGYVCSICLSIFCVPPEGAVCLT 313
Query: 267 CGS 269
C +
Sbjct: 314 CSA 316
>gi|428673524|ref|NP_001258796.1| general transcription factor IIH subunit 3 isoform c [Homo sapiens]
gi|194389784|dbj|BAG60408.1| unnamed protein product [Homo sapiens]
Length = 267
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 139/247 (56%), Gaps = 24/247 (9%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQ 95
N+ L +N+ N++ VIA+ ++Y + G+ G P + LL
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 96 NLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQ 144
+ E + ++ + + K + +G+ +LL+GSL+ ALCYI R+ +S +L
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--V 122
Query: 145 PRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG 204
+ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+
Sbjct: 123 IKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPS 181
Query: 205 LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKC 264
L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C
Sbjct: 182 LLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPIC 241
Query: 265 STCGSVF 271
+TC + F
Sbjct: 242 TTCETAF 248
>gi|429851889|gb|ELA27048.1| transcription factor tfiih subunit [Colletotrichum gloeosporioides
Nara gc5]
Length = 362
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 144/300 (48%), Gaps = 45/300 (15%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ L S+ + +L F+NA L + NQV +IA+ N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALNDVLPLSKAIASILVFVNAHLAFSNANQVAIIASHSNRAVWLY 79
Query: 72 DSSSTGNQSVGNGR----------MPSLCATLLQNLEEFMNKDE-------QLGKQEPEG 114
+ + NG P+ + +F ++ ++ Q E
Sbjct: 80 PTKPEPKAASTNGASEDVDMADAFAPTPNKSNANKYPQFAQIEKAVLGAIREVINQTTEA 139
Query: 115 RIACSL--LSGSLSMALCYIQ----------------RVFRSGLLHPQPR-----GSPDG 151
++C+ LSG+L++AL YI R S L R S
Sbjct: 140 DLSCTTTQLSGALTLALSYINKASMALNETNKTPEATRATSSALTRLHARIFILSVSDSE 199
Query: 152 PEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 211
P QY+ MNA+F+A S +PID+ L ++ FLQQASYIT G + GL YL+
Sbjct: 200 PVQYIPTMNAVFAAAHSQIPIDTLALSG-DATFLQQASYITDGTFMQAASPRGLLSYLMF 258
Query: 212 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 269
+ D +R+ L P VDFRA+CFCH +D G++CS+CLSI+C +C TCG+
Sbjct: 259 AYSADAEARSSLIPPTHHTVDFRAACFCHGRVVDTGFVCSICLSIFCDVPENSECLTCGT 318
>gi|402888057|ref|XP_003907393.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Papio anubis]
gi|426374590|ref|XP_004054153.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Gorilla gorilla gorilla]
Length = 267
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 139/247 (56%), Gaps = 24/247 (9%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQ 95
N+ L +N+ N++ VIA+ ++Y + G+ G P + LL
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 96 NLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQ 144
+ E + ++ + + K + +G+ +LL+GSL+ ALCYI R+ +S +L
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRIL--V 122
Query: 145 PRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG 204
+ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+
Sbjct: 123 IKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPS 181
Query: 205 LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKC 264
L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C
Sbjct: 182 LLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPIC 241
Query: 265 STCGSVF 271
+TC + F
Sbjct: 242 TTCETAF 248
>gi|346472167|gb|AEO35928.1| hypothetical protein [Amblyomma maculatum]
Length = 293
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 151/275 (54%), Gaps = 21/275 (7%)
Query: 11 DDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D+ SL+V ++DTNP + S+FL F N+ L LN N++ VIA +
Sbjct: 5 DEGSLLVTIIDTNPCASLLQNEEGIVSRFLDAATVFCNSHLMLNPCNKLAVIACHSHKSM 64
Query: 69 YVY---DSSSTGNQSV-GNGRMPSLCATLL-QNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
++Y S+ N SV G + S + + ++E + DE E ++ +LL+G
Sbjct: 65 FLYPRAQPSAQENYSVDGQYELFSEVKNAVKEGVKELVLSDEN------ESLVSETLLTG 118
Query: 124 SLSMALCYIQRVFR--SGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 176
LS+ALC+I RV + +G R S + QY+ MN F+AQ+ V ID+C
Sbjct: 119 GLSLALCHINRVEKETAGQKKIASRILVLSASGESASQYLNFMNVFFTAQKKNVIIDACV 178
Query: 177 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 236
L ++S LQQ ITGG + K GL QYLL +F D SR++L P PV VD+RA+
Sbjct: 179 L-EKDSGLLQQGCDITGGKYMKVPNHAGLLQYLLWLFLPDKASRDYLVFPPPVHVDYRAA 237
Query: 237 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
CFCH+N I++GY+CSVCLSI+C CSTC + F
Sbjct: 238 CFCHRNLIEIGYVCSVCLSIFCAFSPICSTCQTAF 272
>gi|441630270|ref|XP_004089523.1| PREDICTED: general transcription factor IIH subunit 3 isoform 3
[Nomascus leucogenys]
Length = 267
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 138/253 (54%), Gaps = 36/253 (14%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY------------------DSSSTGNQSVGNGRMP 87
N+ L +N+ N++ VIA+ ++Y + + +G++ +
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 88 SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRS 138
S +++ +++ M K + G+ +LL+GSL+ ALCYI R+ +S
Sbjct: 65 SANEVIVEEIKDLMTKGDIKGQHTE------TLLAGSLAKALCYIHRMNKEIKDNQEMKS 118
Query: 139 GLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK 198
+L + + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K
Sbjct: 119 RIL--VIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLK 175
Query: 199 PQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC 258
Q+ L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 176 VPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFC 235
Query: 259 KHLKKCSTCGSVF 271
C+TC + F
Sbjct: 236 NFSPICTTCETAF 248
>gi|121713686|ref|XP_001274454.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
clavatus NRRL 1]
gi|119402607|gb|EAW13028.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
clavatus NRRL 1]
Length = 386
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 155/326 (47%), Gaps = 71/326 (21%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLEPSLPLSTAIANILVFINAHLACNYANEVAVVASHTHKATWLY 79
Query: 72 ----------------DSSSTGNQSVGNGRMPSLCATLLQN-------LEEFMNKDEQ-- 106
+ + G+ ++ + S A N +EE ++++ +
Sbjct: 80 PCETQHPRTTTASAPASADNDGDVAMDDSSGSSGAADAHVNKYRPFRIVEEQVSRNLRRL 139
Query: 107 LGKQEPEGRIA--CSLLSGSLSMALCYIQR------------------------------ 134
LG A ++++G+L++AL +I R
Sbjct: 140 LGATTATDVQASTTTMMAGALTLALSHINRRSLAWAEAHGGAAATGSAGAAEGAPGGGGR 199
Query: 135 ---------VFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 185
+S +L S D QY+ IMNAIF+ QR VPID C L ++ FL
Sbjct: 200 ADGEGGGAEGLQSRILIISVSSSTDSAHQYIPIMNAIFACQRLHVPIDVCKLSG-DAVFL 258
Query: 186 QQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTID 245
QQAS T GV+ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D
Sbjct: 259 QQASDATKGVYMSLAEPRGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVD 318
Query: 246 MGYICSVCLSIYCKHLKK--CSTCGS 269
+G++CS+CLSI+C+ + C TCG+
Sbjct: 319 IGFVCSICLSIFCEPPENGGCLTCGT 344
>gi|187608008|ref|NP_001120625.1| general transcription factor IIH, polypeptide 3, 34kDa [Xenopus
(Silurana) tropicalis]
gi|171846721|gb|AAI61775.1| gtf2h3 protein [Xenopus (Silurana) tropicalis]
Length = 200
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 111/183 (60%), Gaps = 13/183 (7%)
Query: 96 NLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-------GS 148
++++ M K Q+ Q+ E ++L+GSL+ ALCYI ++ + + + +
Sbjct: 5 DIKDLMTKTGQINGQQTE-----TVLAGSLAKALCYINKIAKDTKAGQEVKSRILVIKAA 59
Query: 149 PDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQY 208
D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q + L QY
Sbjct: 60 EDSALQYMNFMNVIFAAQKQSILIDACVLDS-DSGLLQQACDITGGIYLKLPQANSLLQY 118
Query: 209 LLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCG 268
LL +F D R+ L L PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC
Sbjct: 119 LLWVFLPDPDQRSHLNLLPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCE 178
Query: 269 SVF 271
+ F
Sbjct: 179 TAF 181
>gi|224156833|ref|XP_002337765.1| predicted protein [Populus trichocarpa]
gi|222869675|gb|EEF06806.1| predicted protein [Populus trichocarpa]
Length = 77
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/77 (84%), Positives = 71/77 (92%)
Query: 159 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 218
MNAIFSAQRSMVPIDSCY+GA NSAFLQQASYITGGV+ KPQ LDGLFQYL T+F TDLH
Sbjct: 1 MNAIFSAQRSMVPIDSCYVGAHNSAFLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLH 60
Query: 219 SRNFLQLPKPVGVDFRA 235
SR+F+QLP+P GVDFRA
Sbjct: 61 SRSFIQLPRPAGVDFRA 77
>gi|310794652|gb|EFQ30113.1| transcription factor tfb4 [Glomerella graminicola M1.001]
Length = 365
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 146/307 (47%), Gaps = 57/307 (18%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ L S+ + ++L F+NA L + NQV + A+ N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALNDVLPLSKAIANILVFVNAHLAFSNANQVAIFASHSNRAVWLY 79
Query: 72 DS------------------------SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL 107
S + T NQS N + P Q M+ +L
Sbjct: 80 PSKPEDAGANGAPYAEDVTMTDADFFAPTPNQSSAN-KFPQFA----QIEAAVMSSMRKL 134
Query: 108 GKQEPEGRIACSL--LSGSLSMALCYIQ----------------RVFRSGLLHPQPR--- 146
E +AC+ LSG+L++AL +I R S L + R
Sbjct: 135 VDATTEADLACTTTQLSGALTLALAHINKTSLSLNETNKAPDVARSTSSALSRLRARIFV 194
Query: 147 --GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG 204
S P QY++ MNA+F+A S +PID+ L ++ FLQQASYIT G + G
Sbjct: 195 LSVSDSEPVQYISTMNAVFAAAHSQIPIDTLALSG-DATFLQQASYITDGTFMQAASPRG 253
Query: 205 LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLK 262
L YL+ + D +R+ L P VDFRA+CFCH +D G++CS+CLSI+C
Sbjct: 254 LLSYLMFAYSADAEARSSLIPPTHHTVDFRAACFCHGRVVDTGFVCSICLSIFCDVPDGS 313
Query: 263 KCSTCGS 269
+C TCG+
Sbjct: 314 ECLTCGT 320
>gi|226294041|gb|EEH49461.1| RNA polymerase II transcription factor B subunit 4
[Paracoccidioides brasiliensis Pb18]
Length = 408
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 160/353 (45%), Gaps = 93/353 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP+ W+ S+L S + ++L F+NA L N N+V V+A+ N ++Y
Sbjct: 19 SLLTVILDTNPYAWALLESTLPLSAAIANLLVFINAHLACNYANKVAVVASHCNHAAWLY 78
Query: 72 DSSSTGNQS-------------VGNGRMPSL---------CATLLQNLEEFMNKDEQLGK 109
+ ST + S NG+ PS + F+ +EQL +
Sbjct: 79 PTPSTPSISQSKAIQLDADGDITMNGQ-PSTEPEPENQQQSQSPFNKYRPFLLVEEQLTR 137
Query: 110 Q-------EPEGRIACS---LLSGSLSMALCYIQR-----VFRSGLLHPQPRGSPDGP-- 152
P + + +L+G+L++AL +I R G +P P S GP
Sbjct: 138 NLHCLLSATPPSAVTSTTSTMLAGALTLALSHINRESIAYAEAHGAANPDPTSSTTGPAT 197
Query: 153 ----------------------------------------------EQYVAIMNAIFSAQ 166
+ Y+ IMN+IF+ Q
Sbjct: 198 STASGLPPPPNSTTADPTSAAANPLNPTALQSRILIISLSNNTHSAQHYIPIMNSIFACQ 257
Query: 167 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ-QLDGLFQYLLTIFGTDLHSRNFLQL 225
R +PID L A ++AFLQQAS TGG++ G QYL+ F D +R L L
Sbjct: 258 RLHIPIDIIKL-AGDAAFLQQASDATGGIYIPINAHPAGFLQYLMLGFLPDQRARAHLIL 316
Query: 226 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL---KKCSTCGSVFGQAQ 275
P V VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C TCG+ G +
Sbjct: 317 PSRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPLGGEGECLTCGTRLGMVE 369
>gi|21410252|gb|AAH31030.1| Unknown (protein for IMAGE:4724313), partial [Homo sapiens]
Length = 235
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 114/189 (60%), Gaps = 18/189 (9%)
Query: 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLH 142
+++ +++ M K + G+ +LL+GSL+ ALCYI R+ +S +L
Sbjct: 37 VIVEEIKDLMTKSDIKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL- 89
Query: 143 PQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQL 202
+ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+
Sbjct: 90 -VIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQM 147
Query: 203 DGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK 262
L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 148 PSLLQYLLWVFLPDQDQRSRLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSP 207
Query: 263 KCSTCGSVF 271
C+TC + F
Sbjct: 208 ICTTCETAF 216
>gi|358389021|gb|EHK26614.1| hypothetical protein TRIVIDRAFT_69532 [Trichoderma virens Gv29-8]
Length = 363
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 150/307 (48%), Gaps = 50/307 (16%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W++ SSLS +Q ++++L F+NA L + NQV VIA N ++Y
Sbjct: 20 SLLSIVLDTNPRAWAALDSSLSLAQAISNILVFVNAHLAFSNTNQVAVIAAHVNRAVWLY 79
Query: 72 ------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-----------PEG 114
+++T + G+ +M + A + NK Q + E E
Sbjct: 80 PAPQNPSATTTTKDNSGDVQMQDVSAET-NSSSASANKYPQFAQIESSVFSSIQTLMAET 138
Query: 115 RI-----ACSLLSGSLSMALCYIQRVFRS---------------GLLHPQPRG------- 147
+ + LSG+L++ALC I + +S P +G
Sbjct: 139 TVQDLDQVTTQLSGALTLALCRINKTAQSLSSSDTTISNAAPVNSTAPPPVKGRIVVISV 198
Query: 148 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQ 207
S P QY+ MNA+F+A + V ID+ L A +S FLQQA + T G+ K GL
Sbjct: 199 SDSEPSQYIPTMNAVFAAAHNQVAIDTIAL-AGDSTFLQQACFNTNGIFLKASNPQGLLT 257
Query: 208 YLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK--KCS 265
YL+ D +R L P VDFR +CFCH +D G++CSVCLSI+C+ + +C
Sbjct: 258 YLMFGLIPDTEARGSLITPTHDTVDFRTACFCHGKVVDTGFVCSVCLSIFCEPPENAECL 317
Query: 266 TCGSVFG 272
TCG++
Sbjct: 318 TCGTILA 324
>gi|302899112|ref|XP_003047982.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256728914|gb|EEU42269.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 355
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 146/300 (48%), Gaps = 40/300 (13%)
Query: 9 YSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+ D SL+ ++LDTNP W++ ++L S+ + ++L F+NA L + NQV +IA +
Sbjct: 15 HEDTPSLLTIVLDTNPRAWAAIGNALPLSRAIANILVFVNAHLAFSNANQVALIAAHVDR 74
Query: 67 CDYVYDSSSTGNQSV-GNGRMPSLCATLLQNLEEF----------MNKDEQLGKQEPEGR 115
++Y + + G+ M + + +F ++ +L Q E
Sbjct: 75 AQWLYPTPPKPTRDASGDVSMKDAAPSQTSSANKFPQFAQIEAAVLDSVRKLMDQTTEAD 134
Query: 116 IACSL--LSGSLSMALCYIQRVFR---------------SGLLHPQPRG-------SPDG 151
+A + LSG+L++ALC+I + + + P RG S
Sbjct: 135 LATTTTQLSGALTLALCHINKAAQALCSPTANLEDNHKATTTAPPTVRGRILVISVSDSE 194
Query: 152 PEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 211
P QY+ MNA+F+A + V ID+ L + FLQQA + TGG + GL YL+
Sbjct: 195 PSQYIPTMNAVFAAAHAQVAIDTLSLTG-DPTFLQQACFNTGGTYLAATHPQGLLTYLMF 253
Query: 212 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 269
D +R L P VDFRA+CFCH +D G++CS+CLSI+C+ +C TCG+
Sbjct: 254 GLIADTEAREALVAPTHDTVDFRAACFCHGRVVDTGFVCSICLSIFCELPENSECLTCGT 313
>gi|212529242|ref|XP_002144778.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
marneffei ATCC 18224]
gi|210074176|gb|EEA28263.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
marneffei ATCC 18224]
Length = 380
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 146/321 (45%), Gaps = 66/321 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LD NP W+ L FS+ L ++L F+NA L N N+V VIA+ ++Y
Sbjct: 20 SLLAIVLDINPHAWALLEDQLPFSKALANILVFINAHLACNYTNEVAVIASHSQRAAWLY 79
Query: 72 ----------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE-- 113
D N + S +T F +EQ+ + E
Sbjct: 80 PAHNQQQKPSTNRLDADGDIDMNGEEAHNSRASRSSTQSNMYRPFRLVEEQVMENVRELL 139
Query: 114 -------GRIACSLLSGSLSMALCYIQRV------------------------------- 135
++++G+L++AL +I R
Sbjct: 140 ASTNASDVTATSTMMAGALTLALSHINRRTMTWTETHGNSNIETAGASASSSATAAVSGG 199
Query: 136 -----FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASY 190
+S +L S D QY+ IMN+IF+ QR +PID C L ++ FLQQAS
Sbjct: 200 NLSLGLQSRILIVSVSSSTDSAHQYIPIMNSIFACQRLHIPIDVCKLSG-DAVFLQQASD 258
Query: 191 ITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYIC 250
T GV+ + GL QYL+ F D SR L +P V VDFRA+CFCH+ +++G++C
Sbjct: 259 ATRGVYMSLSEPRGLLQYLMMAFLPDQRSRKHLIVPSRVDVDFRAACFCHRRVVNIGFVC 318
Query: 251 SVCLSIYCKHLKK--CSTCGS 269
S+CLSI+C+ + C TCG+
Sbjct: 319 SICLSIFCEPPENGDCLTCGT 339
>gi|259489666|tpe|CBF90125.1| TPA: transcription factor TFIIH complex subunit (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 392
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 153/341 (44%), Gaps = 93/341 (27%)
Query: 14 SLVVVLLDTNPFFWS------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V++DTNP W+ + L FS L ++L FLNA L N N+V V+A+ +
Sbjct: 20 SLLTVIIDTNPHAWALLEQNEKNQLPFSTALANILVFLNAHLACNYANEVAVVASHTHKA 79
Query: 68 DYVYDS----------------SSTGNQSVGNGR--------------MPSLCATLLQNL 97
++Y S S+ + S G G + + L++L
Sbjct: 80 AWLYPSPNSPTTSADSDGDVTMSNNNHMSTGGGSGKPSQVNKYRPFRIVEEQVTSNLRHL 139
Query: 98 EEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQR----------------------- 134
+ N+D+ A ++++G+L++AL +I R
Sbjct: 140 VDSTNRDDLDSG-------ASTMMAGALTLALSHINRRTIAWAEAHGGGDASSFSRSGDP 192
Query: 135 --------VFRSGLLHPQPRGSPDG----------------PEQYVAIMNAIFSAQRSMV 170
RS G+ +G QY+ IMN IF+ QR +
Sbjct: 193 DTSTTSMIARRSTTTTATNDGAAEGLQSRILIISVSSATGSAHQYIPIMNGIFACQRLHI 252
Query: 171 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 230
PID C L ++ FLQQAS T G++ + GL QYL+ F D SR L LP V
Sbjct: 253 PIDVCKLSG-DAVFLQQASDATKGIYMSLSEPRGLLQYLMMAFLPDQRSRKHLILPTRVD 311
Query: 231 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGS 269
VDFRA+CFCH+ +D+G++CS+CLSI+C+ + C TCG+
Sbjct: 312 VDFRAACFCHRRVVDIGFVCSICLSIFCEPPENGDCLTCGT 352
>gi|340515579|gb|EGR45832.1| hypothetical protein TRIREDRAFT_67476 [Trichoderma reesei QM6a]
Length = 362
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 152/315 (48%), Gaps = 67/315 (21%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W++ SSLS +Q ++++L F+NA L + NQV VIA N ++Y
Sbjct: 20 SLLSIVLDTNPRAWAALDSSLSLAQAISNILVFVNAHLAFSNANQVAVIAAHVNRAVWLY 79
Query: 72 D-----SSSTGNQSVGNGRM-----------PS---------LCATLLQNLEEFMNKD-- 104
SS+T + G+ +M PS + +++ +++ M +
Sbjct: 80 PALQHPSSTTVKDNSGDVQMHDASAETSLPPPSANKYPQFAQIESSVFSSIQTLMAETTV 139
Query: 105 ---EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS---------------GLLHPQPR 146
+QL Q LSG+L++ALC I + ++ P +
Sbjct: 140 QDLDQLTTQ----------LSGALTLALCRINKAAQALSSSDTTLSNAAPVNATAPPPVK 189
Query: 147 G-------SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKP 199
G S P QY+ MNA+F+A + V ID+ L A +S FLQQA + T G+ K
Sbjct: 190 GRIVVVSVSDSDPSQYIPTMNAVFAAAHNQVAIDTISL-AGDSTFLQQACFNTNGIFLKA 248
Query: 200 QQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK 259
GL YL+ D +R L P VDFR +CFCH +D GY+CSVCLSI+C
Sbjct: 249 ANPRGLLTYLMFGLIPDTEARASLITPTHDTVDFRTACFCHGKVVDTGYVCSVCLSIFCT 308
Query: 260 --HLKKCSTCGSVFG 272
+C TCG+V
Sbjct: 309 PPDNAECLTCGTVLA 323
>gi|432090055|gb|ELK23655.1| General transcription factor IIH subunit 3 [Myotis davidii]
Length = 247
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 113/188 (60%), Gaps = 16/188 (8%)
Query: 92 TLLQNLEEFMNKDEQLGKQ-EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR---- 146
+++ +++ M K + G+ EP LL+GSL+ ALCYI R+ + + + +
Sbjct: 49 VIVEEIKDLMTKSDIKGQHTEP-------LLAGSLAKALCYIHRMHKEVKDNQEMKSRIL 101
Query: 147 ---GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLD 203
+ D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+
Sbjct: 102 VIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMP 160
Query: 204 GLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK 263
L QYLL +F D R+ L LP P+ VD+RA+C CH+N I++GY+CSVCLSI+C
Sbjct: 161 SLLQYLLWVFLPDQDQRSQLTLPPPIHVDYRAACLCHRNLIEIGYVCSVCLSIFCNFSPI 220
Query: 264 CSTCGSVF 271
C+TC + F
Sbjct: 221 CTTCETAF 228
>gi|320582712|gb|EFW96929.1| Subunit of TFIIH complex [Ogataea parapolymorpha DL-1]
Length = 341
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 151/294 (51%), Gaps = 27/294 (9%)
Query: 5 PSKLYSDDVSLVVVLLDTNPFFW----SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVV- 59
P KL + SL+ V++D NP W S+S Q ++ ++ LN+ L+LN N V +
Sbjct: 16 PHKLVDETPSLLAVVVDINPLEWRKLEKDRSVSLKQVVSSIIVMLNSHLSLNSSNHVALY 75
Query: 60 IATGYN---SCDYVYDSSSTGNQSVGNGRMPS----LCATLLQNLEEFMNKD-----EQL 107
+A Y+ Y SST + + M + +++ +E +N+ + +
Sbjct: 76 LANSYSHGAQLIYPLTESSTSTRFLHTPGMYRQFRFIDGSIVDKIEHLLNEQPDTLSQLI 135
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRG------SPDGPEQYVAIMNA 161
G+++ + I +L +G++SMALC+I ++ +S L+ S D YV++MN
Sbjct: 136 GREQGKQHIKGTL-AGAMSMALCHINKIQQSDELNALKSRLLVVSISDDSTLPYVSVMNT 194
Query: 162 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 221
IF++Q+ + +D C LG +S FLQQA+ T GV+ Q +GL QYL T D R
Sbjct: 195 IFASQKMKISVDVCKLGP-SSTFLQQAADATNGVYIYITQPEGLIQYLTTALFIDPMLRP 253
Query: 222 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 273
+ LP +DFRASCF ID+GY+CSVCL I +KC TC S F
Sbjct: 254 IIVLPTDESIDFRASCFITNKVIDVGYVCSVCLCILSVIPEDEKCPTCHSKFDH 307
>gi|254567625|ref|XP_002490923.1| Subunit of TFIIH complex, involved in transcription initiation,
similar to 34 kDa subunit of human T [Komagataella
pastoris GS115]
gi|238030720|emb|CAY68643.1| Subunit of TFIIH complex, involved in transcription initiation,
similar to 34 kDa subunit of human T [Komagataella
pastoris GS115]
Length = 328
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 146/289 (50%), Gaps = 38/289 (13%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI-ATGYNS---- 66
SL+ V++DTNP W+ + + VL LNA L+LN N+V V+ ++ NS
Sbjct: 23 SLLAVVIDTNPLEWTKLKGVICLKELCKSVLVLLNAHLSLNSGNRVAVLTSSSLNSGPKF 82
Query: 67 -----CDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLG--KQEPEGRIACS 119
D Y+ + S + + + ++Q L+ ++ +E L QE +G IA
Sbjct: 83 LYPDPNDKTYEKRESLLSSDIHRQFKFVDQKIIQELQILLD-NEPLNPENQELKGSIA-- 139
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRG------------SPDGPEQYVAIMNAIFSAQR 167
G++SMAL YI R+ + P+ G S D +QYV MN IFSAQ+
Sbjct: 140 ---GAMSMALSYINRLTN---IEPESTGNTLRAKMLVISISDDSTQQYVPFMNCIFSAQK 193
Query: 168 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
V ID C +G +S+FLQQAS +T GV+ + + GL QYL T D R + LP
Sbjct: 194 MKVSIDVCKMGP-DSSFLQQASDVTNGVYMLIKNVHGLIQYLTTALFIDPSLRPIMVLPT 252
Query: 228 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGSVFGQA 274
+DFRASCF ID+GY+CSVCL I+ + C TC S F A
Sbjct: 253 NSDLDFRASCFVTNKVIDIGYVCSVCLCIFSIIPRNNVCPTCQSKFDDA 301
>gi|440633398|gb|ELR03317.1| hypothetical protein GMDG_06064 [Geomyces destructans 20631-21]
Length = 363
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 149/308 (48%), Gaps = 57/308 (18%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ +L S+ + +++ F+NA L N NQV V+A+ + ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLHDTLPLSKAVANLMVFINAHLAFNNANQVAVVASHSHRAAWLY 79
Query: 72 ----DSSSTGNQSV---GNGRMPS-------------LCATLLQNLEEFMNKDEQLGKQE 111
++ G +V G RM + LL +L E ++ E
Sbjct: 80 PRPPNARGAGEDTVMTDGYDRMTKAPNDANKYRPFSLIEHDLLTSLRELIDST----TTE 135
Query: 112 PEGRIACSLLSGSLSMALCYIQR---------VFRSGLLHPQ---------PRG------ 147
+ ++G+L++AL Y + V SG HP PRG
Sbjct: 136 DVSSTTTTQMAGALTLALSYSNKATVTYNESGVSSSGKSHPDGGENPTDDVPRGLLCRIL 195
Query: 148 ----SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLD 203
S D QY+ IMN F+AQR +PID L ++ FLQQAS T G + + +
Sbjct: 196 VISVSGDLAHQYIPIMNTTFAAQRLRIPIDILKLSG-DTVFLQQASDATNGTYMQLRNPQ 254
Query: 204 GLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK 263
GL Q L+ F D +R L P VDFRA+CFCH+N +D+G++CS+CLSI+C +
Sbjct: 255 GLLQSLMLGFLPDQSARTHLISPTQEVVDFRAACFCHRNVVDVGFVCSICLSIFCSPPEG 314
Query: 264 --CSTCGS 269
C TCG+
Sbjct: 315 AICLTCGT 322
>gi|384494657|gb|EIE85148.1| hypothetical protein RO3G_09858 [Rhizopus delemar RA 99-880]
Length = 268
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 140/284 (49%), Gaps = 60/284 (21%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
DD +L+V+++DTNPF W+ S+ LS L +L ++NA L L N + VIA+
Sbjct: 8 EDDSNLLVIIIDTNPFAWNDSAKAELPLSLDDALNQILIYINAHLALKHNNNIAVIASHV 67
Query: 65 NSCDYVY---DSSSTGNQSVGNGRMPSL-------CATLLQNLEEFMNKDEQLGKQEPEG 114
++Y D+ + N + ++ ++ NL+ ++ + + G
Sbjct: 68 GHSQFLYPLPDNQEPAEGANFNKKDANVYPYFQFVTDQVVSNLQRLLSNTDTSFLTKDMG 127
Query: 115 RIACSLLSGSLSMALCYIQRVFR---SGLLHPQP---RGSPDGPEQYVAIMNAIFSAQRS 168
S ++G+LSMALCYI R+ + G + P+ SPD QY+ +MN IFSAQ++
Sbjct: 128 PTT-STITGALSMALCYINRITKLDDEGYIKPRILVLSVSPDSAFQYIPLMNCIFSAQKA 186
Query: 169 MVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKP 228
CY Q+ AFL D +SRNFL LP
Sbjct: 187 ------CY---QHMAFL-----------------------------PDRYSRNFLNLPTQ 208
Query: 229 VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFG 272
VDFRA+CFCHK +D+G++CSVCLSI+CK CSTC + F
Sbjct: 209 DQVDFRAACFCHKQIVDIGFVCSVCLSIFCKWSPVCSTCKTKFA 252
>gi|402224045|gb|EJU04108.1| transcription factor Tfb4 [Dacryopinax sp. DJM-731 SS1]
Length = 305
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 126/275 (45%), Gaps = 26/275 (9%)
Query: 18 VLLDTNPFFW-----SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
++LD P W S+ L FL L F+NA L L N V V +Y
Sbjct: 9 LILDLTPVPWDALSHSTPPLRLKDFLAQALVFINAHLALRNENSVSVFGALPGRSMILYP 68
Query: 73 SSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK--QEPEGRIACSLLSGSLSMALC 130
+ + Q E FM EQ + QE E + +L+ G+L+ +LC
Sbjct: 69 PAGSTQVEADENTF----HVFGQVDEGFMRSVEQEVEDLQEVEEDVPPALV-GALTKSLC 123
Query: 131 YIQRVFRSGLLHPQPRG--------------SPDGPEQYVAIMNAIFSAQRSMVPIDSCY 176
YI R+ SPD Y+ MN IFSAQ+ V ID C
Sbjct: 124 YINRLSNPPPPSNPSEAPPPPPHSRILLFSVSPDASVAYIPFMNCIFSAQKLKVAIDVCK 183
Query: 177 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 236
L FL QA ++TGG Q + L QYL F ++ +R L +P VDFRA+
Sbjct: 184 LDESEVIFLHQACHLTGGAFVPITQREALLQYLSMCFLSETETRKTLAVPTLDKVDFRAA 243
Query: 237 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
CFCHK +D+GY+CSVCLSI+C+ + +CSTC + F
Sbjct: 244 CFCHKEIVDIGYVCSVCLSIFCQPVLECSTCRTKF 278
>gi|255545470|ref|XP_002513795.1| hypothetical protein RCOM_1031970 [Ricinus communis]
gi|223546881|gb|EEF48378.1| hypothetical protein RCOM_1031970 [Ricinus communis]
Length = 159
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 106/196 (54%), Gaps = 46/196 (23%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF 100
VLAFLN+IL NQL+QV+VI +GYNSCDYVYDSS N+S +G++P+L + LLQ LE+F
Sbjct: 5 VLAFLNSILLFNQLSQVLVIGSGYNSCDYVYDSSLIANRSSEDGKIPTLYSELLQKLEDF 64
Query: 101 MNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRGSPDGPEQYVAIMN 160
+ +DE+LGK E L +L + ++ LL P +
Sbjct: 65 IIRDEKLGKGE-------EFLKETLPLHCSQDPCLWHFALLIP----------------D 101
Query: 161 AIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSR 220
+ VPIDSCY+G NSAFLQQ T+ TDLHSR
Sbjct: 102 TMVRKNEGKVPIDSCYVGGHNSAFLQQ-----------------------TVLATDLHSR 138
Query: 221 NFLQLPKPVGVDFRAS 236
N LQLP+P VDFRAS
Sbjct: 139 NCLQLPRPADVDFRAS 154
>gi|346972888|gb|EGY16340.1| RNA polymerase II transcription factor B subunit 4 [Verticillium
dahliae VdLs.17]
Length = 398
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 155/324 (47%), Gaps = 67/324 (20%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
+ SL V+LD NP WS+ S L S+ L++VL +LNA L + NQV VIA+ N
Sbjct: 17 ETASLSTVILDVNPRAWSALSDVLPISKALSNVLIYLNANLAFSNTNQVAVIASHTNRAV 76
Query: 69 YVYDS--------SSTGNQSVGNG-----RMPSLCA-TLLQNLEEFMNKD-EQLGKQEPE 113
++Y + S+ G+ ++ + ++PS T +E+ + + ++L + E
Sbjct: 77 WLYPTKPEPSNVPSTDGDVAMSDAPPKKSKVPSANKFTQFAQVEDAVLRSLKKLLDETTE 136
Query: 114 GRIACSL--LSGSLSMALCYIQRV-------FRSGLLHPQPRGSP-------------DG 151
+ C+ LSG+L++AL +I +V S P +P
Sbjct: 137 ADLDCTTTQLSGALTLALAHINKVNLSYTASLSSDTAKPMTTAAPGLSSHILVVSVSDSD 196
Query: 152 PEQYVAIMNAIFSAQRSMVPIDSCYLG---------------------AQNSAFLQQASY 190
P QY++ MNA+F+A + +PID L A +S+FLQQAS+
Sbjct: 197 PSQYISTMNAVFAAAHASIPIDVLSLSPATAKQTTATQSTDPNDPHKPASSSSFLQQASH 256
Query: 191 ITGGVHHKPQQLDGLFQYLLTIFG---TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMG 247
IT G +P GL YL FG D +R L P VDFRA+CFCH ID G
Sbjct: 257 ITNGTFLEPPSPLGLLAYL--TFGLAVADTRARAALVPPTHHTVDFRAACFCHGRVIDTG 314
Query: 248 YICSVCLSIYCK--HLKKCSTCGS 269
++CSVCLSI+C C TCG+
Sbjct: 315 FVCSVCLSIFCSVPEGADCLTCGT 338
>gi|321470747|gb|EFX81722.1| hypothetical protein DAPPUDRAFT_224195 [Daphnia pulex]
Length = 301
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 140/279 (50%), Gaps = 24/279 (8%)
Query: 12 DVSLVVVLLDTNPF-------FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+ LV +++D P + S ++ ++ F NA L N++ VIA
Sbjct: 9 ETPLVAIVIDATPAKKFASQAIIDNGSTMMNRIFDALIGFGNAHLMQGSHNKLAVIACNS 68
Query: 65 NSCDYVY-----DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
S ++Y DS S N+ + + + L E + KD + + + S
Sbjct: 69 KSTKFLYPSENGDSKSYHNRPGQYDMFAKVDSDIRHGLSELILKDSI----DHDSTTSDS 124
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQ--PR-----GSPDGPEQYVAIMNAIFSAQRSMVPI 172
LL G+++ ALC+I ++ R L Q PR GS D QY+ MN F+AQ+ V I
Sbjct: 125 LLGGAMARALCHIHKIQRELSLSHQLKPRILVVSGSSDSALQYMTFMNVFFTAQKENVVI 184
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 232
D C + + +S LQQ ITGG + + + GL +YLL +F R+ + LP P VD
Sbjct: 185 DCCMMDS-DSGLLQQGCDITGGQYLRIPTVVGLLEYLLWVFLPGPSCRSKIVLPPPTKVD 243
Query: 233 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+RA+CFCH +D+G++CSVCLSI+CK C+TC + F
Sbjct: 244 YRAACFCHHKLVDIGWVCSVCLSIFCKFSIICTTCNTEF 282
>gi|302413233|ref|XP_003004449.1| RNA polymerase II transcription factor B subunit 4 [Verticillium
albo-atrum VaMs.102]
gi|261357025|gb|EEY19453.1| RNA polymerase II transcription factor B subunit 4 [Verticillium
albo-atrum VaMs.102]
Length = 384
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 155/324 (47%), Gaps = 67/324 (20%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
+ SL V+LD NP WS+ S L S+ L++VL +LNA L + NQV VIA+ N
Sbjct: 17 ETASLCTVILDVNPRAWSALSDVLPISKALSNVLIYLNANLAFSNTNQVAVIASHTNRAV 76
Query: 69 YVYDS--------SSTGNQSVGNG-----RMPSLCA-TLLQNLEEFMNKD-EQLGKQEPE 113
++Y + S+ G+ ++ + ++PS T +E+ + + ++L + E
Sbjct: 77 WLYPTKSEPSNTPSTDGDVAMSDAPPKKAKVPSANKFTQFAQVEDAVLRSLKKLLDETTE 136
Query: 114 GRIACSL--LSGSLSMALCYIQRV-------FRSGLLHPQPRGSP-------------DG 151
+ C+ LSG+L++AL +I +V S P +P
Sbjct: 137 ADLDCTTTQLSGALTLALAHINKVNLSYTASLSSDTAKPMTTAAPGLSSHILVVSVSDSD 196
Query: 152 PEQYVAIMNAIFSAQRSMVPIDSCYLG---------------------AQNSAFLQQASY 190
P QY++ MNA+F+A + +PID L A +S+FLQQAS+
Sbjct: 197 PSQYISTMNAVFAAAHASIPIDVLSLSPATAKQTAAAQTTDPNDPHKSASSSSFLQQASH 256
Query: 191 ITGGVHHKPQQLDGLFQYLLTIFG---TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMG 247
IT G +P GL YL FG D +R L P VDFRA+CFCH ID G
Sbjct: 257 ITNGTFLEPPSPLGLLAYL--TFGLAVADTRARAALVPPTHHTVDFRAACFCHGRVIDTG 314
Query: 248 YICSVCLSIYCK--HLKKCSTCGS 269
++CSVCLSI+C C TCG+
Sbjct: 315 FVCSVCLSIFCSVPEGADCLTCGT 338
>gi|347440963|emb|CCD33884.1| similar to RNA polymerase II transcription factor B subunit 4
[Botryotinia fuckeliana]
Length = 358
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 148/298 (49%), Gaps = 45/298 (15%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
S +V++LDTNP W SS+L S+ + ++L F+NA L +N NQV +IA+ + ++Y
Sbjct: 22 SCLVIILDTNPHAWEILSSTLPLSKAIANLLVFVNAHLAVNNSNQVAIIASHCHRAVWLY 81
Query: 72 DSSSTGNQSVGNG----RMPSLCA------TLLQNLEEFMNKDEQLGKQEPEGRIACSL- 120
+ + ++ G P A L++N +N L + E ++ +
Sbjct: 82 PAPPSASEDTEMGGSTTHGPPDDANKYRQFALIEN--TLLNSVRSLIESTTEQEVSTTTT 139
Query: 121 --LSGSLSMALCYIQRVF------RSGLLHPQPRG-------------------SPDGPE 153
++G+L++AL YI + + P P S D
Sbjct: 140 TQMAGALTLALSYINKQLTAYSDVSAADSKPTPSDITPSDSTTGLQSRILVLSVSGDLAH 199
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 213
QY+ IMN F+AQR +PID L A ++ FLQQAS T G++ + GL QYL+ F
Sbjct: 200 QYIPIMNTTFAAQRMRIPIDILKL-AGDTVFLQQASDTTRGIYMHLKNPQGLLQYLMMAF 258
Query: 214 GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGS 269
D SR L P VDFRA+CFCH+ +D+G++CS+CLSI+C + C TC +
Sbjct: 259 LPDQTSRKDLIAPTQEVVDFRAACFCHRKVVDVGFVCSICLSIFCSPPEGAICLTCST 316
>gi|154310839|ref|XP_001554750.1| hypothetical protein BC1G_06398 [Botryotinia fuckeliana B05.10]
Length = 356
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 148/298 (49%), Gaps = 45/298 (15%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
S +V++LDTNP W SS+L S+ + ++L F+NA L +N NQV +IA+ + ++Y
Sbjct: 20 SCLVIILDTNPHAWEILSSTLPLSKAIANLLVFVNAHLAVNNSNQVAIIASHCHRAVWLY 79
Query: 72 DSSSTGNQSVGNG----RMPSLCA------TLLQNLEEFMNKDEQLGKQEPEGRIACSL- 120
+ + ++ G P A L++N +N L + E ++ +
Sbjct: 80 PAPPSASEDTEMGGSTTHGPPDDANKYRQFALIEN--TLLNSVRSLIESTTEQEVSTTTT 137
Query: 121 --LSGSLSMALCYIQRVF------RSGLLHPQPRG-------------------SPDGPE 153
++G+L++AL YI + + P P S D
Sbjct: 138 TQMAGALTLALSYINKQLTAYSDVSAADSKPTPSDITPSDSTTGLQSRILVLSVSGDLAH 197
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 213
QY+ IMN F+AQR +PID L A ++ FLQQAS T G++ + GL QYL+ F
Sbjct: 198 QYIPIMNTTFAAQRMRIPIDILKL-AGDTVFLQQASDTTRGIYMHLKNPQGLLQYLMMAF 256
Query: 214 GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGS 269
D SR L P VDFRA+CFCH+ +D+G++CS+CLSI+C + C TC +
Sbjct: 257 LPDQTSRKDLIAPTQEVVDFRAACFCHRKVVDVGFVCSICLSIFCSPPEGAICLTCST 314
>gi|303314233|ref|XP_003067125.1| Transcription factor Tfb4 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106793|gb|EER24980.1| Transcription factor Tfb4 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037386|gb|EFW19323.1| transcription factor TFIIH subunit Tfb4 [Coccidioides posadasii
str. Silveira]
Length = 395
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 149/335 (44%), Gaps = 86/335 (25%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ +L S + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 17 SLLTIVLDTNPHAWALLEDTLPLSTAVANLLVFVNAHLACNYANKVAVVASHSQEARWLY 76
Query: 72 D-----------------------SSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ-- 106
SS+TG N P + +EE + ++ +
Sbjct: 77 PTPTTASSNTNQDEPADTDGDVAMSSTTGESPASNKYRP------FRIVEEQLTRNLKAL 130
Query: 107 LGKQEPEG--RIACSLLSGSLSMALCYIQRV------------FRSGLLHPQP------- 145
L P ++++G+L++AL +I R S +P P
Sbjct: 131 LATTSPASVSSATSTMMAGALTLALSHINRETIAYAETHGTSRLDSDPSNPTPTATGLPP 190
Query: 146 -------------RGSPDG----------------PEQYVAIMNAIFSAQRSMVPIDSCY 176
R SP G QY+ IMN+IF+ QR +PID C
Sbjct: 191 PPGSHPDPTSQSSRSSPTGLQSRILIISVSSATGSAHQYIPIMNSIFACQRLHIPIDICK 250
Query: 177 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 236
L ++ FLQQA T G++ G QYL+ F D SR L LP V VDFRA+
Sbjct: 251 LSG-DAVFLQQACDATRGIYVPVDHPRGFLQYLMVAFLPDQRSRRHLILPTRVDVDFRAA 309
Query: 237 CFCHKNTIDMGYICSVCLSIYCKHLK--KCSTCGS 269
CFCH+ +D+G++CS+CLSI+C+ + C TCG+
Sbjct: 310 CFCHRKVVDVGFVCSICLSIFCEPPEGADCLTCGT 344
>gi|449546921|gb|EMD37890.1| hypothetical protein CERSUDRAFT_136815 [Ceriporiopsis subvermispora
B]
Length = 331
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 146/289 (50%), Gaps = 34/289 (11%)
Query: 11 DDVSLVVVLLDTNPFFW---SSSS----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + V++D +P W S SS L FL+ +LAF N+ + N + V
Sbjct: 2 DKASHLSVVIDLSPTQWHLCSQSSNPHPLPLQLFLSQLLAFFNSHIACKDENSLAVFGAF 61
Query: 64 YNSCDYVYDSSSTGNQ-----SVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+Y S++ + + N P L +T++ ++ + + E L + P G
Sbjct: 62 PGKSILLYSSTTIAAEEHSVNADANTYRPFKILDSTIMDSIRDQLEALELLEAEAPIG-- 119
Query: 117 ACSLLSGSLSMALCYIQRVF-------RSG--LLHPQPR-----GSPDGPEQYVAIMNAI 162
L G+++ +LCYI R+ R+G + PR SPD Y+ IMN+I
Sbjct: 120 ----LVGAITKSLCYINRLTIPSSSTTRAGEQAVPLDPRILIFSVSPDQSSSYIPIMNSI 175
Query: 163 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 222
FSAQ+ V ID C + +S FLQQA+++TGG + + D L QYL F R
Sbjct: 176 FSAQKLKVTIDVCKIYGSDSVFLQQAAHLTGGSYLHLDRPDALLQYLTMSFLPPPGIRQL 235
Query: 223 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
L +P +DFRA+CFCHK +D+G++CSVCLSI+C + CSTC + F
Sbjct: 236 LSVPTQDKIDFRAACFCHKRIVDIGFVCSVCLSIFCNPVPVCSTCRTKF 284
>gi|258567552|ref|XP_002584520.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905966|gb|EEP80367.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 398
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 151/329 (45%), Gaps = 74/329 (22%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ +L S + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLEETLPLSTAVANLLVFINAHLACNYANKVAVVASHSQEARWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQN----------LEEFMNKDEQLGKQEPE-------- 113
+S+T + NG + T + + F +EQL + +
Sbjct: 80 PASTTSPSNSQNGSTDTDGDTNMSSSNPPPTQSNKYRPFRIVEEQLTRNLKDLLSTTSPA 139
Query: 114 --GRIACSLLSGSLSMALCYIQR---VFR-------------------SGLLHPQPRGSP 149
++++G+L++AL +I R V+ + P P GS
Sbjct: 140 SLSSTTSTMMAGALTLALSHINRETIVYAETHGASSAKLDADPSNPAPTASALPPPPGST 199
Query: 150 DGP---------------------------EQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 182
P QY+ IMN+IF+ QR +PID C L ++
Sbjct: 200 FDPSSNTNRNLSGLQSRILIISVSSATGSAHQYIPIMNSIFACQRLHIPIDICKLSG-DA 258
Query: 183 AFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKN 242
FLQQA T G++ G QYL+ F D SR+ L LP V VDFRA+CFCH+
Sbjct: 259 VFLQQACDATRGIYVPVDHPLGFLQYLMVAFLPDQRSRSHLILPTRVDVDFRAACFCHRK 318
Query: 243 TIDMGYICSVCLSIYCKHLK--KCSTCGS 269
+D+G++CS+CLSI+C+ + C TCG+
Sbjct: 319 VVDVGFVCSICLSIFCEPPEGADCLTCGT 347
>gi|67515713|ref|XP_657742.1| hypothetical protein AN0138.2 [Aspergillus nidulans FGSC A4]
gi|40746160|gb|EAA65316.1| hypothetical protein AN0138.2 [Aspergillus nidulans FGSC A4]
Length = 384
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 150/337 (44%), Gaps = 93/337 (27%)
Query: 18 VLLDTNPFFWS------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
V++DTNP W+ + L FS L ++L FLNA L N N+V V+A+ + ++Y
Sbjct: 16 VIIDTNPHAWALLEQNEKNQLPFSTALANILVFLNAHLACNYANEVAVVASHTHKAAWLY 75
Query: 72 DS----------------SSTGNQSVGNGR--------------MPSLCATLLQNLEEFM 101
S S+ + S G G + + L++L +
Sbjct: 76 PSPNSPTTSADSDGDVTMSNNNHMSTGGGSGKPSQVNKYRPFRIVEEQVTSNLRHLVDST 135
Query: 102 NKDEQLGKQEPEGRIACSLLSGSLSMALCYIQR--------------------------- 134
N+D+ A ++++G+L++AL +I R
Sbjct: 136 NRDDLDSG-------ASTMMAGALTLALSHINRRTIAWAEAHGGGDASSFSRSGDPDTST 188
Query: 135 ----VFRSGLLHPQPRGSPDG----------------PEQYVAIMNAIFSAQRSMVPIDS 174
RS G+ +G QY+ IMN IF+ QR +PID
Sbjct: 189 TSMIARRSTTTTATNDGAAEGLQSRILIISVSSATGSAHQYIPIMNGIFACQRLHIPIDV 248
Query: 175 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 234
C L ++ FLQQAS T G++ + GL QYL+ F D SR L LP V VDFR
Sbjct: 249 CKLSG-DAVFLQQASDATKGIYMSLSEPRGLLQYLMMAFLPDQRSRKHLILPTRVDVDFR 307
Query: 235 ASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGS 269
A+CFCH+ +D+G++CS+CLSI+C+ + C TCG+
Sbjct: 308 AACFCHRRVVDIGFVCSICLSIFCEPPENGDCLTCGT 344
>gi|410976500|ref|XP_003994658.1| PREDICTED: general transcription factor IIH subunit 3 [Felis catus]
Length = 407
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 158/336 (47%), Gaps = 79/336 (23%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
L D+++L+V+++DTNP +W L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 60 LVEDELNLLVIIVDTNPIWWGKQGLKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIAS 119
Query: 63 GYNSCDYVYDSSS---------TGNQSV-------GNGRMPSLCA---TLLQNLEEFMNK 103
++Y + GN S +G+ A + + +++ M K
Sbjct: 120 HIQESRFLYPGKNGRLGDFFGDPGNPSSEFSPSGSKDGKYELFTAANEVIAEEIKDLMTK 179
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQP--------- 145
+ G+ +LL+GSL+ ALCYI R+ +S +L P
Sbjct: 180 SDIKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILFQAPNAPMSMPNI 233
Query: 146 ---------------------RGSPDGPEQYVAIMNAIFSA------QRSM---VPIDSC 175
G+ D Y ++ A RS+ + ID+C
Sbjct: 234 LHVGAAACCSERPWALGTGRLEGAGDSTAFYRLCDRSLAKAWVLQLQMRSIYLNILIDAC 293
Query: 176 YLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA 235
L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L LP P+ VD+RA
Sbjct: 294 VLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRA 352
Query: 236 SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 353 ACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 388
>gi|156034244|ref|XP_001585541.1| hypothetical protein SS1G_13425 [Sclerotinia sclerotiorum 1980]
gi|154698828|gb|EDN98566.1| hypothetical protein SS1G_13425 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 356
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 150/302 (49%), Gaps = 53/302 (17%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
S +V++LDTNP W+ SS+L S+ + ++L F+NA L +N NQV +IA+ + ++Y
Sbjct: 20 SCLVIILDTNPHAWALLSSTLPLSKAVANLLVFINAHLAVNNANQVAIIASHCHRAVWLY 79
Query: 72 DSSSTGNQSVGNG--------------RMPSLCA-TLLQNLEEFMNKDEQLGKQEPEGRI 116
+ + ++ + G R +L TLL +L ++ ++
Sbjct: 80 PAPPSASEDIEMGGSTTHGPPNDANKYRQFALIENTLLNSLRNLISST----TEQEVSTT 135
Query: 117 ACSLLSGSLSMALCYIQRV---------------------------FRSGLLHPQPRGSP 149
+ ++G+L++AL YI + +S +L G
Sbjct: 136 TTTQMAGALTLALSYINKQSLAYNDVSASDSKPTTSDVNTSDSSIGLQSRILVLSVSG-- 193
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 209
D QY+ IMN F+AQR +PID L A ++ FLQQAS T G++ + GL QYL
Sbjct: 194 DLAHQYIPIMNTTFAAQRMRIPIDILKL-AGDTVFLQQASDTTRGIYMHLKNPQGLLQYL 252
Query: 210 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTC 267
+ F D SR L P VDFRA+CFCH+ +D+G++CS+CLSI+C + C TC
Sbjct: 253 MIAFLPDQTSRKDLIAPTQEVVDFRAACFCHRKVVDVGFVCSICLSIFCSPPEGAICLTC 312
Query: 268 GS 269
+
Sbjct: 313 ST 314
>gi|302759787|ref|XP_002963316.1| hypothetical protein SELMODRAFT_438480 [Selaginella moellendorffii]
gi|300168584|gb|EFJ35187.1| hypothetical protein SELMODRAFT_438480 [Selaginella moellendorffii]
Length = 916
Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats.
Identities = 81/175 (46%), Positives = 110/175 (62%), Gaps = 16/175 (9%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MA AP DD SLVVVLLDT+ FW++ S S L VL+FLN++ +N +N +V+I
Sbjct: 706 MAGAPP---PDDSSLVVVLLDTSLHFWNAVVRS-SSGLQQVLSFLNSLALMNHMNHLVII 761
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
A+G NSC+++YDS + ++ N + S ++ L +F+++D Q P + SL
Sbjct: 762 ASGCNSCEFLYDSLDSDERAGANHQTAS--EKIVHKLNDFVSRD---ATQPP--KFQPSL 814
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMV 170
LS SLSMALCYIQR + + +PR SPD P QY+AIMNAIFSAQRSMV
Sbjct: 815 LSASLSMALCYIQRALKEKIGPSKPRMLCLQASPDAPHQYIAIMNAIFSAQRSMV 869
>gi|346324613|gb|EGX94210.1| transcription factor TFIIH subunit Tfb4 [Cordyceps militaris CM01]
Length = 366
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 149/311 (47%), Gaps = 61/311 (19%)
Query: 14 SLVVVLLDTNPFFWS-----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
SL+ V++DTNP W+ S LS + + ++L F+NA L + NQV VIA N
Sbjct: 20 SLLSVIIDTNPRAWAVLDDGSLPLSLTAAVANLLLFINAHLAFSGANQVAVIAAHVNRAV 79
Query: 69 YVYDSSSTG----NQSVGNG------------------RMPSLC---ATLLQNLEEFMNK 103
++Y SS + + + +G + P AT+L +L++ M +
Sbjct: 80 WLYPSSHSPKPIQDNTSADGDVAMADAPAAATTPSSANKYPQFAQIEATVLGSLKKLMAE 139
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR---------------SGLLHPQP-RG 147
E + + LSG+L++ALC+ + R SG P P +G
Sbjct: 140 -----TTERDLDSTTTQLSGALTLALCHTNKASRALGASDTAIHEAAQTSGTTPPSPMKG 194
Query: 148 -------SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 200
S QY+ MNA+F+A V ID+ L A ++ FLQQA + TGGV +
Sbjct: 195 RILVLSVSDSESSQYIPTMNAVFAAAHGRVAIDALAL-AGDATFLQQACFNTGGVFLRAA 253
Query: 201 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK- 259
GL YL+ D +R L P VDFRA+CFCH N +D G++CS+CLSI+C+
Sbjct: 254 NPQGLLAYLMFGLVADTEAREALVAPTHDTVDFRAACFCHGNVVDTGFVCSICLSIFCEL 313
Query: 260 -HLKKCSTCGS 269
+C TCG+
Sbjct: 314 PDNAECFTCGT 324
>gi|322709828|gb|EFZ01403.1| transcription factor TFIIH subunit Tfb4, putative [Metarhizium
anisopliae ARSEF 23]
Length = 358
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 146/302 (48%), Gaps = 52/302 (17%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ + LS S+ + ++L F+NA L + +NQV ++A N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALDNVLSISKAIANILVFVNAHLAFSNVNQVAIVAAHVNRAVWLY 79
Query: 72 ------------------DSSSTGNQSVGNG--RMPSLCATLLQNLEEFMNKDEQLGKQE 111
D SS ++ N + + +L ++++ M++ E
Sbjct: 80 PTPPQTSPKDTSDDVHMNDVSSESPRNSANKYPQFAQIETAVLGSMQKLMSE-----TTE 134
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRS---------GLLHPQPRGSP------------- 149
+ + LSG+L++ALC+I + ++ + P +P
Sbjct: 135 QDLEATTTQLSGALTLALCHINKASQALSGASSSLAEVAQPSANAAPPMKGRILVVSVSD 194
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 209
P QY+ MNA+F+A + V ID+ L N FLQQA + T G+ GL YL
Sbjct: 195 SEPTQYIPTMNAVFAAAHAQVAIDTLSLSG-NPTFLQQACFNTNGIFLAAANPKGLLTYL 253
Query: 210 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTC 267
+ D +R L P VDFRA+CFCH +D G+ICS+CLSI+C+ +C TC
Sbjct: 254 MFGLIADTEARQSLITPTHDTVDFRAACFCHGKVVDRGFICSICLSIFCELPENAECLTC 313
Query: 268 GS 269
G+
Sbjct: 314 GT 315
>gi|428174859|gb|EKX43752.1| hypothetical protein GUITHDRAFT_87651 [Guillardia theta CCMP2712]
Length = 343
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 156/316 (49%), Gaps = 41/316 (12%)
Query: 11 DDV-SLVVVLLDTNPFFWSSSSL----SFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
DD+ S ++V+LD N W+ S+ + + L +L FL A L+ N V +IA
Sbjct: 22 DDLPSSLIVILDLNQASWTESTAKGGPTVIEALESLLTFLRAFFMLHGGNTVTIIAAHPY 81
Query: 66 SCDYVYDS------SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-PEGRIAC 118
+++Y S + G+Q G M + L + + + QE + + C
Sbjct: 82 GSEFLYQSPALQRSKAHGHQQSGALEMDEIDHRLHEKIVSLSKSLKSKSSQENSDSSMKC 141
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPID 173
SLLS + ++A C + R+ LL PR S + P QY+ IMN IFS Q++ V ID
Sbjct: 142 SLLSSAFALAACTVNRISSHKLLRMLPRVLVLTASTELPSQYIPIMNCIFSMQKANVLID 201
Query: 174 SCYLGAQNSAFLQQASYITGGVHHKPQ------QLDGLFQYLLTIFGTDLHSR------- 220
+ + + +FLQQA+ IT GV+ +P+ L +++++F D H+R
Sbjct: 202 ALVVSDGDCSFLQQAADITNGVYLRPELSKVGSSPGALLSWMISVFLGDKHTRFLNADSQ 261
Query: 221 ---NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK-HLKKCSTCGSVFGQAQT 276
L+LP+ VD+R+SCF +D+G++CSVCLSI+ K C TC S +
Sbjct: 262 SRSTLLRLPQAQDVDYRSSCFKTGQLVDVGFVCSVCLSIFAKCDFFICPTCDS-----KI 316
Query: 277 QSDEP--SATNRKRKT 290
D P +A N+KRK
Sbjct: 317 ALDRPAGAAVNKKRKV 332
>gi|225717796|gb|ACO14744.1| General transcription factor IIH subunit 3 [Caligus clemensi]
Length = 302
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 150/300 (50%), Gaps = 33/300 (11%)
Query: 12 DVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ L+++++D NP + L +L F NA L L+ N + I + + +
Sbjct: 14 EAQLLILVMDMNPNQRLLLEEPTRLTSVLDSLLCFSNAHLLLHPSNALAAIGSLSSGSYF 73
Query: 70 VY------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
+Y D+S Q G + +L T ++N K QL + E G S LSG
Sbjct: 74 LYPSSCIDDTSPELRQLDGQYELFTLVETSVRN------KFSQLLEAETSGS-EDSPLSG 126
Query: 124 SLSMALCYIQRVFRSGLLHPQPRG-------SPDGPEQYVAIMNAIFSAQRSMVPIDSCY 176
SL+MAL YI R + P+ R S D QY+ MN F+AQ+ V +D+C
Sbjct: 127 SLAMALAYINRKRKES---PELRARILILTASGDTASQYMNYMNVFFTAQKLNVLLDACM 183
Query: 177 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 236
L + +S LQQ + ITGG++ L L Q+LL IF R L LP V VDFRA+
Sbjct: 184 LQS-DSPLLQQGADITGGLYFNVPDLAALLQFLLWIFLPSAEIRPQLGLPTGVKVDFRAA 242
Query: 237 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF-------GQAQTQSDEPSATNRKRK 289
CFCH+ + +G++CSVCLSI+CK C+TC +VF G+ + + S++ KRK
Sbjct: 243 CFCHRQLVGVGFVCSVCLSIFCKFSPICTTCQTVFRVPAPLLGKKKKSIAQGSSSLLKRK 302
>gi|412993660|emb|CCO14171.1| predicted protein [Bathycoccus prasinos]
Length = 370
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 16/167 (9%)
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPR-------GSPDGPEQYVAIMNAIFSAQRSMVPID 173
++G++S+AL Y R+ R L + + S D EQYV +MNA+F+AQ S + ID
Sbjct: 203 IAGAISLALTYANRIERDPSLRGRVKSRVLVVQASEDDAEQYVPMMNAMFAAQSSNILID 262
Query: 174 SCYLGAQNSAFLQQASYITGGVHHKPQQ---------LDGLFQYLLTIFGTDLHSRNFLQ 224
L + S+FLQQA++++GG++ KP++ + L + L F D ++R FL+
Sbjct: 263 CLCLNEKESSFLQQAAFVSGGIYAKPEKSKKGGGEETREDLLERALCSFLPDRYTRRFLR 322
Query: 225 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
P+ +DFR+SCFCH N I G++CSVCLS++CK C TCG+ F
Sbjct: 323 PPRAGSIDFRSSCFCHGNRISKGFVCSVCLSVFCKKEGACQTCGAAF 369
>gi|400593294|gb|EJP61268.1| transcription factor tfb4 [Beauveria bassiana ARSEF 2860]
Length = 373
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 149/318 (46%), Gaps = 68/318 (21%)
Query: 14 SLVVVLLDTNPFFWS-----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
SL+ V++DTNP W+ LS + ++L F+NA L + NQV VIA N
Sbjct: 20 SLLSVIIDTNPRAWAVLDDGDLPLSLPTAVANLLLFINAHLAFSGANQVAVIAAHVNRAV 79
Query: 69 YVYD------------SSSTGNQSVGN----------GRMPS----------LCATLLQN 96
++Y +S N S G+ G PS + AT+L +
Sbjct: 80 WLYPSSQQQQQNLLSNTSPRPNPSDGDVDMADAPSATGTTPSSANKYPPFAHIEATVLAS 139
Query: 97 LEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR---------------SGLL 141
L++ M + E + + LSG+L++ALC+ + R SG
Sbjct: 140 LKQLMAE-----TTERDLDSTTTQLSGALTLALCHNNKAGRALSASDTALLDAAQASGAT 194
Query: 142 HPQP-RG-------SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITG 193
P P +G S QY+ IMNA+F+A S V ID+ L A ++ FLQQA + TG
Sbjct: 195 APPPMKGRILVLSVSDSESAQYIPIMNAVFAAAHSHVAIDTLAL-AGDATFLQQACFGTG 253
Query: 194 GVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVC 253
GV + GL YL+ D +R L P VDFRA+CFCH N +D G++CS+C
Sbjct: 254 GVFLRAANPQGLLAYLMFGMIADSEAREALVAPAHDTVDFRAACFCHGNVVDTGFVCSIC 313
Query: 254 LSIYCK--HLKKCSTCGS 269
LSI+C +C TCG+
Sbjct: 314 LSIFCDLPENAECLTCGT 331
>gi|46138695|ref|XP_391038.1| hypothetical protein FG10862.1 [Gibberella zeae PH-1]
gi|408390605|gb|EKJ69997.1| hypothetical protein FPSE_09842 [Fusarium pseudograminearum CS3096]
Length = 355
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 147/298 (49%), Gaps = 40/298 (13%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+ ++LDTNP W+S S L S+ + ++L F+NA L + N+V +IA + +
Sbjct: 17 DTPSLLSIVLDTNPRAWASLNSLLPLSRAIANILVFVNAHLAFSNANRVALIAAHVDRAE 76
Query: 69 YVYDSSSTGNQSV-GNGRM--PSLCATLLQNLEEFMNKD-------EQLGKQEPEGRIAC 118
++Y + ++ G+ M S T EF + +L Q E ++
Sbjct: 77 WLYPTPPKPSRDASGDVEMNDASQTQTSANKFPEFAQIETAVLSGIRKLMDQTKEADLSA 136
Query: 119 SL--LSGSLSMALCYIQRVFR----------------SGLLHPQPRG-------SPDGPE 153
+ +SG+L++ALC+I + + S P RG S P
Sbjct: 137 TTTQISGALTLALCHINKAAQALCSPTANLEDSHKGSSSTSPPTVRGRILVISVSDSEPS 196
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 213
QY+ MNA+F+A + V ID+ L + + FL+QA Y TGG + GL YL+
Sbjct: 197 QYIPTMNAVFAAAHTQVAIDTLSLTGEPT-FLEQACYNTGGTYLAATHPQGLLNYLMFGL 255
Query: 214 GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK--KCSTCGS 269
+D +R L VDFRA+CFCH +D G++CS+CLSI+C+ + +C TCG+
Sbjct: 256 MSDTEAREALINSVHDTVDFRAACFCHGRVVDTGFVCSICLSIFCETPENSECFTCGT 313
>gi|391332492|ref|XP_003740668.1| PREDICTED: general transcription factor IIH subunit 3-like
[Metaseiulus occidentalis]
Length = 297
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 138/269 (51%), Gaps = 11/269 (4%)
Query: 10 SDDVS-LVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D+VS L+ V+LDT+ + Q L V+ F NA L + N + V+A ++
Sbjct: 10 EDEVSELLAVVLDTSFNSALIKEKNVGQLLDAVVIFSNAHLMNSSKNTLAVVACHPHTAK 69
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS-LLSGSLSM 127
+Y S+ N R P +L + + + + +G + LL+G +++
Sbjct: 70 MIY---PVKKDSIQNIRPPDAQMEILAHATQVIRDGIKEVVTSWQGVYSIEPLLTGGMAL 126
Query: 128 ALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 182
ALCYI + + + R S + QY+ MN F+AQR + +DSC + +
Sbjct: 127 ALCYIAKRMANTVGKLNGRILVLSSSGESAHQYLNFMNVFFAAQRKAIVVDSCVI-QNDC 185
Query: 183 AFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKN 242
LQQ + ITGG + K + GL +YLL +F R L LPKP VD+R +CFCH+N
Sbjct: 186 GLLQQGADITGGNYLKAPSIAGLLEYLLWVFLPPKSLRAKLVLPKPDVVDYRTACFCHRN 245
Query: 243 TIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
I++GY+CSVCLSI+C+ CSTC + F
Sbjct: 246 LIEVGYVCSVCLSIFCQFAPICSTCQTHF 274
>gi|449295631|gb|EMC91652.1| hypothetical protein BAUCODRAFT_300256 [Baudoinia compniacensis
UAMH 10762]
Length = 386
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 150/329 (45%), Gaps = 78/329 (23%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ +L ++ + +L F+NA L +N NQV VIA+ +++Y
Sbjct: 20 SLLTIIIDTNPHAWALLDDTLPLTKAVASLLVFINAHLAINYTNQVAVIASHSERAEWLY 79
Query: 72 DS-----SSTGNQSVGNGR-----------------------MPSLCATLLQNLEEFMNK 103
+ + N ++ NGR L TL+ NL + MN
Sbjct: 80 PTDVHPDNVQSNGALANGRDYEDLMDRGGPVQPPDDANKYRPFAQLEHTLMYNLRKMMNT 139
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS---------------------GLLH 142
+ ++L+G+L+ AL YI + S L
Sbjct: 140 T----TTDAINSSPATMLAGALTRALAYISKQTASLPTATSSTQFNYSDPSAMAGGNELT 195
Query: 143 PQPRGSP----------------DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQ 186
P S D ++Y+ IMN IF+ QR VPID L A + FLQ
Sbjct: 196 TDPTKSANALGLSSRILIVSVSGDLADRYIEIMNCIFACQRMSVPIDVLKL-AGDPVFLQ 254
Query: 187 QASYITGGVH---HKPQQLDGLFQYLLTIFGTDLHSRNFLQLP-KPVGVDFRASCFCHKN 242
QA+ TGG++ GL QYL+ + D +RN L P + GVDFRA+CFCHK
Sbjct: 255 QAADTTGGIYMSLSTSTARAGLLQYLMFAYLMDQTARNHLIAPGEGEGVDFRAACFCHKR 314
Query: 243 TIDMGYICSVCLSIYCKHLKK--CSTCGS 269
+D+G++CS+CLSI+C+ L C CGS
Sbjct: 315 VVDIGFVCSICLSIFCEPLPDGTCLLCGS 343
>gi|240274744|gb|EER38259.1| RNA polymerase II transcription factor B subunit 4 [Ajellomyces
capsulatus H143]
Length = 412
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 156/346 (45%), Gaps = 91/346 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIILDTNPHAWARLEPSLPLSAAIANLLVFINAHLACNYANKVAVVASHCHHAAWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQNL----------------EEFMNK-------DEQLG 108
+ ++ S PS A ++ EE +NK +EQL
Sbjct: 80 PTPASPKSSDSQTDAPSKDAPPDGDINMNGQQSSGQHQQAEQEEPLNKYRPFRLVEEQLT 139
Query: 109 KQ-------EPEGRIACS---LLSGSLSMALCYIQR---VFRSGLLHPQPRGSPDGP--- 152
+ IA + L++G+L++AL +I R + +P GS GP
Sbjct: 140 RNLHTLLSTTTAADIASTTSTLIAGALTLALSHINRETIAYAETHGTARPDGSTSGPANS 199
Query: 153 ------------------------------------------EQYVAIMNAIFSAQRSMV 170
Y+ IMN+IF+ QR +
Sbjct: 200 TASGLPPPPGTTASATTSHLPNPSALQSRILIISLSSTTHSAHHYIPIMNSIFACQRLHI 259
Query: 171 PIDSCYLGAQNSAFLQQASYITGGVH-HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 229
PID L A ++AFLQQAS T G++ G QYL+ F D +R+ L LP V
Sbjct: 260 PIDILKL-AGDAAFLQQASDATRGIYIPATSHPAGFLQYLMLGFLPDQRARSHLVLPSRV 318
Query: 230 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHL------KKCSTCGS 269
VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C TCGS
Sbjct: 319 DVDFRAACFCHRRVVDVGFVCSICLSIFCEPLAGVDGVAECLTCGS 364
>gi|325094096|gb|EGC47406.1| RNA polymerase II transcription factor B subunit 4 [Ajellomyces
capsulatus H88]
Length = 412
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 156/346 (45%), Gaps = 91/346 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIILDTNPHAWARLEPSLPLSAAIANLLVFINAHLACNYANKVAVVASHCHHAAWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQNL----------------EEFMNK-------DEQLG 108
+ ++ S PS A ++ EE +NK +EQL
Sbjct: 80 PTPASPKSSDSQTDAPSKDAPPDGDINMNGQQSSGQHQQAEQEEPLNKYRPFRLVEEQLT 139
Query: 109 KQ-------EPEGRIACS---LLSGSLSMALCYIQR---VFRSGLLHPQPRGSPDGP--- 152
+ IA + L++G+L++AL +I R + +P GS GP
Sbjct: 140 RNLHTLLSTTTAADIASTTSTLIAGALTLALSHINRETIAYAETHGTARPDGSTSGPANS 199
Query: 153 ------------------------------------------EQYVAIMNAIFSAQRSMV 170
Y+ IMN+IF+ QR +
Sbjct: 200 TASGLPPPPGTTASATTSHLPNPSALQSRILIISLSSTTHSAHHYIPIMNSIFACQRLHI 259
Query: 171 PIDSCYLGAQNSAFLQQASYITGGVH-HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 229
PID L A ++AFLQQAS T G++ G QYL+ F D +R+ L LP V
Sbjct: 260 PIDILKL-AGDAAFLQQASDATRGIYIPATPHPAGFLQYLMLGFLPDQRARSHLVLPSRV 318
Query: 230 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHL------KKCSTCGS 269
VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C TCGS
Sbjct: 319 DVDFRAACFCHRRVVDVGFVCSICLSIFCEPLAGVDGVAECLTCGS 364
>gi|225558318|gb|EEH06602.1| RNA polymerase II transcription factor B subunit 4 [Ajellomyces
capsulatus G186AR]
Length = 412
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 156/346 (45%), Gaps = 91/346 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIILDTNPHAWARLEPSLPLSAAIANLLVFINAHLACNYANKVAVVASHCHHAAWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQNL----------------EEFMNK-------DEQLG 108
+ ++ S PS A ++ EE +NK +EQL
Sbjct: 80 PTPASPKSSDSQTDPPSKDAPPDGDINMNGQQSAGQYQQAEQEESLNKYRPFRLVEEQLT 139
Query: 109 KQ-------EPEGRIACS---LLSGSLSMALCYIQR---VFRSGLLHPQPRGSPDGP--- 152
+ IA + L++G+L++AL +I R + +P GS GP
Sbjct: 140 RNLHTLLSTTTAADIASTTSTLIAGALTLALSHINRETIAYAETHGTARPDGSTSGPANS 199
Query: 153 ------------------------------------------EQYVAIMNAIFSAQRSMV 170
Y+ IMN+IF+ QR +
Sbjct: 200 TASGLPPPPGTTASATTSHLPNPSALQSRILIISLSSTTHSAHHYIPIMNSIFACQRLHI 259
Query: 171 PIDSCYLGAQNSAFLQQASYITGGVH-HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 229
PID L A ++AFLQQAS T G++ G QYL+ F D +R+ L LP V
Sbjct: 260 PIDILKL-AGDAAFLQQASDATRGIYIPATSHPAGFLQYLMLGFLPDQRARSHLVLPSRV 318
Query: 230 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHL------KKCSTCGS 269
VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C TCGS
Sbjct: 319 DVDFRAACFCHRRVVDVGFVCSICLSIFCEPLAGVDGVAECLTCGS 364
>gi|119174356|ref|XP_001239539.1| hypothetical protein CIMG_09160 [Coccidioides immitis RS]
gi|392869735|gb|EAS28255.2| transcription factor tfb4 [Coccidioides immitis RS]
Length = 396
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 150/330 (45%), Gaps = 75/330 (22%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ +L S + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 17 SLLTIVLDTNPHAWALLEDTLPLSTAVANLLVFVNAHLACNYANKVAVVASHSQEARWLY 76
Query: 72 DSSSTG----NQ-------------SVGNGRMPSLCA-TLLQNLEEFMNKDEQ--LGKQE 111
+ +T NQ S G P+ + +EE + ++ + L
Sbjct: 77 PTPTTAPSNTNQDEPADTDGDVAMSSTTGGESPASNKYRPFRIVEEQLTRNLKALLATTS 136
Query: 112 PEG--RIACSLLSGSLSMALCYIQRV------------FRSGLLHPQP------------ 145
P ++++G+L++AL +I R S +P P
Sbjct: 137 PASVSSATSTMMAGALTLALSHINRETIAYAETHGTSRLDSDPSNPTPTATGLPPPPGSH 196
Query: 146 --------RGSPDG----------------PEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 181
SP G QY+ IMN+IF+ QR +PID C L +
Sbjct: 197 PDPTSQSSHSSPTGLQSRILIISVSSATGSAHQYIPIMNSIFACQRLHIPIDICKLSG-D 255
Query: 182 SAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHK 241
+ FLQQA T G++ G QYL+ F D SR L LP V VDFRA+CFCH+
Sbjct: 256 AVFLQQACDATRGIYVPVDHPRGFLQYLMVAFLPDQRSRRHLILPTRVDVDFRAACFCHR 315
Query: 242 NTIDMGYICSVCLSIYCKHLK--KCSTCGS 269
+D+G++CS+CLSI+C+ + C TCG+
Sbjct: 316 KVVDVGFVCSICLSIFCEPPEGADCLTCGT 345
>gi|336371329|gb|EGN99668.1| hypothetical protein SERLA73DRAFT_53296 [Serpula lacrymans var.
lacrymans S7.3]
Length = 297
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 138/291 (47%), Gaps = 44/291 (15%)
Query: 18 VLLDTNPFFWSSSS-------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
V+LD +P W S+ LS FL+ +LAFLNA + N + V +
Sbjct: 9 VILDLSPTQWHLSAQSSNQYPLSIHSFLSQLLAFLNAHIASKHENTLAVFGAFPGKSVML 68
Query: 71 YDSSSTGNQSVGNGRMPSLCATLLQN---LEEFMNKDEQLGKQEPEGRIACSLLSGSLSM 127
Y S+ V S + + + + MN+ + LG + E A L G+L+
Sbjct: 69 YSSTDPVADDVPPADANSYSSFKVVDFTIVRSIMNEFDALGNLDEEPPCA---LVGALTK 125
Query: 128 ALC--------YIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDS 174
ALC + + P PR SPD Y+ IMN+IFSAQ+ V ID
Sbjct: 126 ALCCKSISAHFHSPNAVEDPAVLPDPRILILSVSPDLSTSYIPIMNSIFSAQKLKVTIDV 185
Query: 175 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 234
C + ++ FLQQA+++TGG + ++ D L QYL F + R L +PK +DFR
Sbjct: 186 CKVYGPDAVFLQQAAHLTGGSYIFLERRDALLQYLTMSFLSPPALRQVLAVPKQDKIDFR 245
Query: 235 ASCFCHKNTIDMGYICSVCLS------------------IYCKHLKKCSTC 267
A+CFCHKN +D+G++CSVCLS ++C+ + CSTC
Sbjct: 246 AACFCHKNIVDVGFVCSVCLSSNHILFYVVKLWFTYMCTVFCQPVPVCSTC 296
>gi|443727474|gb|ELU14215.1| hypothetical protein CAPTEDRAFT_169977 [Capitella teleta]
Length = 299
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 154/286 (53%), Gaps = 37/286 (12%)
Query: 14 SLVVVLLDTNPFFWSSSSLS------FSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
S +++++DT+P +W L S+ L ++ F +A L L+ NQ+VV+A N
Sbjct: 8 SCLILVIDTSPVWWGKKLLKQEYGRILSESLDALMVFCSAHLMLHHQNQLVVLAAHTNCS 67
Query: 68 DYVY------DSSSTGN-----QSVGNGRMPSLCATLLQN-LEEFMNKDEQLGKQEPEGR 115
++ D++ G+ QS G + + +++++ L + + D G E
Sbjct: 68 QVIFPSPNAHDAAMNGDAAFRGQSDGKYEVFAEVQSIIKDQLTDLILHD---GGGEVHSD 124
Query: 116 IACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQ 166
L+G+L+ ALCY+ ++ RS +L Q GS D P QY+ +MN IF+AQ
Sbjct: 125 CL---LAGALARALCYVNKINKGLPDGDAMRSRVLVVQ--GSEDNPLQYMDLMNIIFTAQ 179
Query: 167 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH-SRNFLQL 225
+ V ID+C + ++S LQQ ITGG + K Q L QYLL +F + +R L L
Sbjct: 180 KQNVIIDACIMD-EDSPILQQVCDITGGFYLKTPQPSALLQYLLWVFLLEPGGAREKLNL 238
Query: 226 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
P V VD+RA+CFCH+N I+ GY+CSVCLS++C CSTC + F
Sbjct: 239 PAKVHVDYRAACFCHRNLINTGYVCSVCLSVFCSFSPICSTCQTTF 284
>gi|452978955|gb|EME78718.1| hypothetical protein MYCFIDRAFT_124295, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 339
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 151/334 (45%), Gaps = 85/334 (25%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+ V+LDTNP W+ SLS SQ + ++L F+NA + +N N+V V+A+ +++Y
Sbjct: 4 ALLTVILDTNPHAWALLEHSLSLSQLVVNLLVFVNAHIAINPANRVAVVASHSECAEWLY 63
Query: 72 DSSSTGNQSV----GNGRMPSLC---------------------------ATLLQNLEEF 100
+ + GNG + + NL
Sbjct: 64 PTPARAQSHAANGNGNGTHVEMADGDPAPRGGPVQAPDDANKYRPFAHIEHAITTNLRRL 123
Query: 101 MNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQR---VFRSGLLHPQ------PRGSPDG 151
M+ Q ++++G+L+ AL YI + SG Q P G
Sbjct: 124 MSSTSAEALQS----TPATMMAGALTRALAYISKQSQTLPSGAASSQQFNYSDPNSVAGG 179
Query: 152 PE-----------------------------QYVAIMNAIFSAQRSMVPIDSCYLGAQNS 182
E QY+ IMN+IF+ QR +PID L A ++
Sbjct: 180 NEASSGTSQGNNMLGLTSRILILSVSGDLADQYIPIMNSIFACQRLSIPIDILKL-AGDT 238
Query: 183 AFLQQASYITGGVH----HKPQQLDGLFQYLLTIFGTDLHSRNFLQLP-KPVGVDFRASC 237
FLQQA+ TGG++ H+ + G QYL+ + D +R L +P + GVDFRA+C
Sbjct: 239 VFLQQAADATGGIYMALDHRTRA--GFLQYLMFAYLPDEAARKHLIVPGEGEGVDFRAAC 296
Query: 238 FCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 269
FCH+ +D+G++CS+CLSI+C+ H C TCGS
Sbjct: 297 FCHRRVVDIGFVCSICLSIFCEPLHDSTCLTCGS 330
>gi|452820306|gb|EME27350.1| transcription initiation factor TFIIH subunit H3 isoform 2
[Galdieria sulphuraria]
gi|452820307|gb|EME27351.1| transcription initiation factor TFIIH subunit H3 isoform 1
[Galdieria sulphuraria]
Length = 328
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 144/297 (48%), Gaps = 38/297 (12%)
Query: 10 SDDVSLVVVLLDTNP--------FFWSSSSLS--------FSQFLTHVLAFLNAILTLNQ 53
SD +L+ VLLD +P F S S+ S FL ++ FL+ L N
Sbjct: 33 SDKSNLLCVLLDLSPNLFDRLDKFVPSQSAKSVDLIEADALETFLLQLITFLHVFLLSNF 92
Query: 54 LNQVVVIATGYNSCDYVYDSSSTGNQSVGNG------------RMPSLCATLLQNLEEFM 101
N++V+I + VY+ S + R+ L + L+N+ F+
Sbjct: 93 ANRLVIIVYNEYNIHVVYEDKGLNTLSDPSNSASFLLTEERQERLTRLDSEFLKNVASFI 152
Query: 102 NKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQP---RGSPDGPEQYVAI 158
+ E G +LLS SLS ALCY+ R S + S D P+QY+ +
Sbjct: 153 -ESYPYNSCEENG----TLLSASLSFALCYLHRRILSERYEARILCLHASSDVPKQYIGV 207
Query: 159 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG--LFQYLLTIFGTD 216
MN+IF AQR + ID C L + S+ LQQA+++TGG++ KP+Q + L YL +++
Sbjct: 208 MNSIFCAQRWSILIDVCNLHEEESSLLQQAAHLTGGIYFKPKQSEAIPLSNYLCSLYFPS 267
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQ 273
+R +L++P VD A CF I MGYICSVCL+ + + C+ CG+ F +
Sbjct: 268 RDARKYLKIPVLNSVDCSALCFESGEKIHMGYICSVCLATFGRKRLSCNICGAEFAE 324
>gi|398392135|ref|XP_003849527.1| hypothetical protein MYCGRDRAFT_75897 [Zymoseptoria tritici IPO323]
gi|339469404|gb|EGP84503.1| hypothetical protein MYCGRDRAFT_75897 [Zymoseptoria tritici IPO323]
Length = 386
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 70/331 (21%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SLS S+ + ++L F+NA + +N N+V V+A+ +++Y
Sbjct: 20 SLLTIILDTNPHAWALLEDSLSLSKVVVNLLVFVNAHIAINHANRVAVLASHSERAEWLY 79
Query: 72 DSSSTGNQSVGNG---RMPSLCATL------------------LQNLEEFMNKDEQLGKQ 110
++ + + NG M AT+ Q N +L ++
Sbjct: 80 PTAPSSHSHRTNGDDVEMADSTATMNGGANHPPPDDPNKYRPFAQIEHALANNLRKLIER 139
Query: 111 EPEGRIACS---LLSGSLSMALCYIQRV------------FRSGLLHPQPRGSPD----- 150
++ + +++G+L+MAL YI + F + P G D
Sbjct: 140 TSTSSLSATPATMMAGALTMALSYISKQSAALPTTTSSAQFNYSDPNAGPAGGNDLAADN 199
Query: 151 -GP--------------------EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQAS 189
GP +QY+ IMN+IF+ QR +PID L A ++ FLQQA+
Sbjct: 200 KGPNNLLGLTSRILILSVSGDLADQYIPIMNSIFACQRLSIPIDILKL-AGDTVFLQQAA 258
Query: 190 YITGGVHH--KPQQLDGLFQYLLTIFGTDLHSRNFLQLP-KPVGVDFRASCFCHKNTIDM 246
TGG++ Q G QYL+ + D +RN L +P + GVDFRA+CFCH+ +D+
Sbjct: 259 DATGGIYMALDEQSRAGFLQYLMFAYLPDQTARNHLIMPGESEGVDFRAACFCHRRVVDI 318
Query: 247 GYICSVCLSIYCKHLK--KCSTCGSVFGQAQ 275
G++CS+CLSI+C+ ++ +C TCGS A
Sbjct: 319 GFVCSICLSIFCEPMQDGQCLTCGSHLSMAN 349
>gi|226468218|emb|CAX69786.1| putative general transcription factor IIH [Schistosoma japonicum]
Length = 317
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 149/316 (47%), Gaps = 59/316 (18%)
Query: 8 LYSDDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+ S+ SL++++LD P W +S + L F N+ L L+ N+V VI +
Sbjct: 1 MSSEVRSLLLLILDMTPASWGFCTSDFGLPNCIEAALGFANSHLMLSSFNEVAVIGVTPS 60
Query: 66 SCDYVYDS-SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
++Y S S T + +G+ +L + + N ++ D +I +L+G+
Sbjct: 61 QIKFIYPSHSETLVGASNDGQNDAL--SCMNNTVRQLSLDLVTSCSSTSTQI---VLAGA 115
Query: 125 LSMALCYIQRVFRSGLLHPQPR---------------------------GSPDGPEQYVA 157
+ LCY R R L P R S D QY++
Sbjct: 116 IIKGLCYYLRRCRE--LQPSTRHLDDPSETTMEFSEGNDKISARILIIKASDDSTSQYLS 173
Query: 158 IMNAIFSAQRSMVPIDSCYL----------------GAQNSAFLQQASYITGGVHHKPQQ 201
+MN++F+AQ+ VPID+C L +S+ LQQA+ +TGG++ + +
Sbjct: 174 LMNSVFTAQKLHVPIDTCVLPLPRQLDNLNGRRSISSPGHSSLLQQAADLTGGIYLQIPR 233
Query: 202 LDGLFQYLLTIFGTDLHSRNFLQLPKP------VGVDFRASCFCHKNTIDMGYICSVCLS 255
+ GL QYLL++F R L LP GVDFRA+CFCHK ID+GY+CS+CLS
Sbjct: 234 VSGLLQYLLSVFLPSSKMRTSLILPDSRSSGLSFGVDFRAACFCHKRLIDIGYVCSICLS 293
Query: 256 IYCKHLKKCSTCGSVF 271
++C+ C TC + F
Sbjct: 294 VFCEFNPICPTCNTPF 309
>gi|405968700|gb|EKC33746.1| Poly [ADP-ribose] polymerase 4 [Crassostrea gigas]
Length = 3371
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 141/279 (50%), Gaps = 52/279 (18%)
Query: 14 SLVVVLLDTNPFFW---------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
S ++++LDTNP +W + ++ ++ L V+ F ++ L +N N++ +IA
Sbjct: 2844 SQLIIILDTNPVWWGHKPSSHTKAQQKMTLTECLNSVMVFAHSHLMMNHSNKLAIIAAHS 2903
Query: 65 NSCDYVYDS--------SSTGNQSVGNGRMPSLCATLLQNLEEFMNK--DEQL-GKQEPE 113
+ ++Y S + GN L + + ++E + D + G+ P+
Sbjct: 2904 DQSVFLYPKNDPTVHVISEADEVTEGNDGKYELFNQVDKQIKEGIKNLIDNCMNGQLYPD 2963
Query: 114 GRIACSLLSGSLSMALCYIQRVFR-SGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPI 172
SL++G+L+MALC QR +G+L + R +V I
Sbjct: 2964 -----SLVAGALAMALC--QRSHEEAGIL-----------------------SSRILVVI 2993
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 232
D+C L + S LQQA ITGG++ K Q+ GL QYL+ +F D R L LP V VD
Sbjct: 2994 DACVLDNE-SGLLQQACDITGGIYLKIPQMKGLLQYLMWVFLPDPLERPKLTLPPKVQVD 3052
Query: 233 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+RA+CFCH+N ID+GY+CSVCLSI+C C TC + F
Sbjct: 3053 YRAACFCHRNLIDIGYVCSVCLSIFCAFSPICGTCQTTF 3091
>gi|154286010|ref|XP_001543800.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407441|gb|EDN02982.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 413
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 153/347 (44%), Gaps = 92/347 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIILDTNPHAWARLEPSLPLSAAIANLLVFINAHLACNYANKVAVVASHCHHAAWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCAT----LLQNLEEFMNKDEQLGKQEPEGR------------ 115
+ ++ S PS A + N ++ + +Q ++EP +
Sbjct: 80 PTPASPKSSDSQTDAPSKDAPPDGDISMNDQQSAGQHQQAEQEEPLNKYRPFRLVEEQLT 139
Query: 116 -----------------IACSLLSGSLSMALCYIQRVF----------------RSGLLH 142
+L++G+L++AL +I R SG +
Sbjct: 140 RNLHTLLSTTTAADIASTTSTLIAGALTLALSHINRETIAYAETHGTARPDGSSTSGPAN 199
Query: 143 PQPRGSPDGP---------------------------------EQYVAIMNAIFSAQRSM 169
G P P Y+ IMN+IF+ QR
Sbjct: 200 STASGLPPPPGTTASATTSHLPNPSALQSRILIISLSSTTHSAHHYIPIMNSIFACQRLH 259
Query: 170 VPIDSCYLGAQNSAFLQQASYITGGVH-HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKP 228
+PID L A ++AFLQQAS T G++ G QYL+ F D +R+ L LP
Sbjct: 260 IPIDILKL-AGDAAFLQQASDATRGIYIPATSHPAGFLQYLMLGFLPDQRARSHLVLPSR 318
Query: 229 VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL------KKCSTCGS 269
V VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C TCGS
Sbjct: 319 VDVDFRAACFCHRRVVDVGFVCSICLSIFCEPLGGVDGVAECLTCGS 365
>gi|322698540|gb|EFY90309.1| transcription factor TFIIH subunit Tfb4, putative [Metarhizium
acridum CQMa 102]
Length = 358
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 144/302 (47%), Gaps = 52/302 (17%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ L S+ + ++L F+NA L + +NQV V+A N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAVLDDVLPISKAIANILVFVNAHLAFSNVNQVAVVAAHVNRAVWLY 79
Query: 72 ---------DSS-----------STGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE 111
D+S S N + + + +L ++++ M++ E
Sbjct: 80 PTPPQTSPKDTSGDVHMIDVPGDSPRNSANKYPQFAQIETAVLASMQKLMSE-----TTE 134
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFR-----SGLLH--PQPRG---------------SP 149
+ + LSG+L++ALC+I + + SG L QP S
Sbjct: 135 QDLEATTTQLSGALTLALCHINKASQALSGASGSLAEVAQPSANAALPMKGRILVVSVSD 194
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 209
P QY+ IMNA+F+A + V ID+ L N FLQQA + T G GL YL
Sbjct: 195 SEPSQYIPIMNAVFAAAHAQVAIDTLCLSG-NPTFLQQACFNTNGTFLAAANPKGLLAYL 253
Query: 210 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTC 267
+ D +R L P VDFRA+CFCH +D G++CS+CLSI+C+ +C TC
Sbjct: 254 MFGLIADTEARQSLITPTHDTVDFRAACFCHGKVVDRGFVCSICLSIFCELPENAECLTC 313
Query: 268 GS 269
G+
Sbjct: 314 GT 315
>gi|358396042|gb|EHK45429.1| hypothetical protein TRIATDRAFT_221909 [Trichoderma atroviride IMI
206040]
Length = 367
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 148/310 (47%), Gaps = 52/310 (16%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ S LS SQ ++++L F+NA L + NQV VIA N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALESRLSLSQAISNILVFVNAHLAFSNTNQVAVIAAHVNRAVWLY 79
Query: 72 DSSSTGNQSV--------GNGRMPSLCA-TLLQNLEEFMNKDEQLGKQE----------- 111
+++ Q G+ +M + A T + NK Q + E
Sbjct: 80 PAAAAAAQKPLAAARDHSGDVQMQDVSAETNNSSSSPSANKYPQFAQIESSVFSSIQSLM 139
Query: 112 PEGRI-----ACSLLSGSLSMALCYIQRVFRS--------------GLLHPQPRG----- 147
E + + LSG+L++ALC I + ++ P P
Sbjct: 140 AETTVQDLDQVTTQLSGALTLALCRINKASQALSASDTTLSNAAPVNSAAPPPVKSRIVV 199
Query: 148 ---SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG 204
S P QY+ MNA+F+A + V ID+ L A +S FLQQA + T G+ K G
Sbjct: 200 ISVSDSEPSQYIPTMNAVFAAAHNQVAIDTIAL-AGDSTFLQQACFNTNGIFLKASNPQG 258
Query: 205 LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK-- 262
L YL+ D +R + P VDFR +CFCH +D G++CSVCLSI+C+ +
Sbjct: 259 LLTYLMFGLIPDTEARESIITPAHDTVDFRTACFCHGRVVDTGFVCSVCLSIFCEPPENA 318
Query: 263 KCSTCGSVFG 272
+C TCG+V
Sbjct: 319 ECLTCGTVLA 328
>gi|226467818|emb|CAX69785.1| putative general transcription factor IIH [Schistosoma japonicum]
Length = 317
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 149/316 (47%), Gaps = 59/316 (18%)
Query: 8 LYSDDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+ S+ SL++++LD P W +S + L F N+ L L+ N+V VI +
Sbjct: 1 MSSEVRSLLLLILDMTPASWGFCTSDFGLPNCIEAALGFANSHLMLSSFNEVAVIGVTPS 60
Query: 66 SCDYVYDS-SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
++Y S S T + +G+ +L + + N ++ D +I +L+G+
Sbjct: 61 QIKFIYPSHSETLVGASNDGQNDAL--SCMNNTVRQLSLDLVTSCSSTSTQI---VLAGA 115
Query: 125 LSMALCYIQRVFRSGLLHPQPR---------------------------GSPDGPEQYVA 157
+ LCY R R L P R S D QY++
Sbjct: 116 IIKGLCYYLRRCRE--LQPSTRHLDDPSETTMEFSEGNDKISARILIIKASDDSTSQYLS 173
Query: 158 IMNAIFSAQRSMVPIDSCYL----------------GAQNSAFLQQASYITGGVHHKPQQ 201
+MN++F+AQ+ VPID+C L +S+ LQQA+ +TGG++ + +
Sbjct: 174 LMNSVFTAQKLHVPIDTCVLPLPRQLDNLNGRRSISSPGHSSLLQQAADLTGGIYLQIPR 233
Query: 202 LDGLFQYLLTIFGTDLHSRNFLQLPKP------VGVDFRASCFCHKNTIDMGYICSVCLS 255
+ GL QYLL++F R L LP GVDFRA+CFCH+ ID+GY+CS+CLS
Sbjct: 234 VSGLLQYLLSVFLPSSKMRTSLILPDSRSSGLSFGVDFRAACFCHRRLIDIGYVCSICLS 293
Query: 256 IYCKHLKKCSTCGSVF 271
++C+ C TC + F
Sbjct: 294 VFCEFNPICPTCNTPF 309
>gi|388582433|gb|EIM22738.1| transcription factor Tfb4 [Wallemia sebi CBS 633.66]
Length = 272
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 13/178 (7%)
Query: 117 ACSLLSGSLSMALCYIQRVF----RSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPI 172
A S L+ +L+ +LC++ R +S S D P +YV++MN+IF+AQ+S + I
Sbjct: 85 ASSTLASTLAQSLCHVNRKIVQESKSTFRILVVAASDDVPPEYVSLMNSIFAAQKSKIVI 144
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 232
D + N+ FLQQA+++TGG + + L QYL+ F R L P+ VD
Sbjct: 145 DVVQIYNCNTIFLQQAAHLTGGNFIQATDPESLVQYLIMAFLPSQPLRARLVQPRSDKVD 204
Query: 233 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF---------GQAQTQSDEP 281
FRA+CFCHK +D+ YICSVCLSI+C+ ++CSTC SVF G QT S P
Sbjct: 205 FRAACFCHKRIVDIAYICSVCLSIFCQPPQRCSTCNSVFPAKTLQKFTGSLQTHSHAP 262
>gi|344300009|gb|EGW30349.1| hypothetical protein SPAPADRAFT_63205 [Spathaspora passalidarum
NRRL Y-27907]
Length = 367
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 158/356 (44%), Gaps = 74/356 (20%)
Query: 3 SAPSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
++ S+ SD+ SL+ ++LD +P W ++ + ++L FLNA L LN NQV I
Sbjct: 13 TSSSEAISDEPSLLTIILDISPLGWYKLRDLMTLEEMTKNLLVFLNAHLALNNSNQVAFI 72
Query: 61 ATGYNSCDYVY-------------DSSSTGNQSVGNG---RMPSLCATLLQNLEEFMNKD 104
A+ ++Y D +++ V G + + +L+ L EF+N
Sbjct: 73 ASSPKGSRFLYPNPAKSYQEVKVSDGATSARDFVNKGMYRQFRIVDKAVLEELNEFLN-- 130
Query: 105 EQLGKQEPEGRIA--CSLLSGSLSMALCYIQRVF-------------------------- 136
++ K + + +A S LSG+LSMAL Y R+
Sbjct: 131 -EINKDQDDTMLADPASKLSGALSMALTYTNRMLTLDQSITTTTASAIASTTSSSASAAS 189
Query: 137 ------------------RSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 178
+S +L + D +Y+ IMN IF+AQ+ + ID LG
Sbjct: 190 STATGAGGASSGSSSTSMKSRILVVS--ANDDNDVKYIPIMNTIFAAQKMKLSIDIIKLG 247
Query: 179 -AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASC 237
+NS++LQQ S T G++ G+ Q L T + + R F+ LP V++RASC
Sbjct: 248 DEENSSYLQQPSDATNGIYLHLTDPRGIIQVLSTAYFIEPSLRPFIILPTNSNVNYRASC 307
Query: 238 FCHKNTIDMGYICSVCLSIY--CKHLKKCSTCGSVFGQAQTQ--SDEPSATNRKRK 289
F +D+GY+CSVCL I KKC TC S F + + EP +KRK
Sbjct: 308 FITGKAVDVGYVCSVCLCIMSIIPDSKKCPTCNSQFDERIIHQLTKEPEVVKKKRK 363
>gi|119618834|gb|EAW98428.1| general transcription factor IIH, polypeptide 3, 34kDa, isoform
CRA_c [Homo sapiens]
Length = 169
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 88/133 (66%), Gaps = 1/133 (0%)
Query: 146 RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGL 205
+ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L
Sbjct: 19 KAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSL 77
Query: 206 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCS 265
QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+
Sbjct: 78 LQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICT 137
Query: 266 TCGSVFGQAQTQS 278
TC + + +T+S
Sbjct: 138 TCDAESQEKETES 150
>gi|254580699|ref|XP_002496335.1| ZYRO0C16016p [Zygosaccharomyces rouxii]
gi|238939226|emb|CAR27402.1| ZYRO0C16016p [Zygosaccharomyces rouxii]
Length = 342
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 136/297 (45%), Gaps = 31/297 (10%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQ------FLTHVLAFLNAILTLNQLNQVVV 59
S L + SL+ V++DT P W+ +Q L +L FLNA L N NQV V
Sbjct: 37 SHLAEETPSLLTVIVDTAPRLWAELDNERNQTGKIIDMLKSLLVFLNAHLAFNSSNQVAV 96
Query: 60 IATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL----------GK 109
IA Y+Y SS+ + G+ S+ + +F N DE L K
Sbjct: 97 IAAHSQGIKYLYPKSSSNQSNSLKGKDLSIINNDM--YRQFRNVDETLVEELYGLFQQEK 154
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRV--------FRSGLLHPQ--PRGSPDGPEQYVAIM 159
++ + S L+G++S L Y+ RV F+S LL G D QY+ IM
Sbjct: 155 EQADEVTQKSTLAGAMSAGLTYVNRVSKELETISFKSRLLVVTCGSGGGRDEIFQYIPIM 214
Query: 160 NAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 218
N IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T D
Sbjct: 215 NCIFSATKLKCPIDVVKIGGSKESTFLQQTTDATQGVYLHAESTEGLIQYLATAMFIDPS 274
Query: 219 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL--KKCSTCGSVFGQ 273
R + P VDFR SC+ + +GYICSVCL + +C C S F +
Sbjct: 275 LRQIIVKPNQGSVDFRTSCYLTGKVVAIGYICSVCLCVLSVSPPGNRCPACDSEFDE 331
>gi|50286117|ref|XP_445487.1| hypothetical protein [Candida glabrata CBS 138]
gi|62901307|sp|Q6FWA7.1|TFB4_CANGA RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|49524792|emb|CAG58398.1| unnamed protein product [Candida glabrata]
Length = 335
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 139/295 (47%), Gaps = 33/295 (11%)
Query: 10 SDDV-SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
++D+ SL+ V+LD +P W S S + L ++ FLN+ L N NQV VIA
Sbjct: 19 TEDIPSLLTVVLDISPRLWAEFDHRSGEKQSVTTVLKSLIVFLNSHLAFNSANQVAVIAA 78
Query: 63 GYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK------QEPEGR 115
Y+Y SS T Q+ GN + S+ ++ + F N DE L + Q E
Sbjct: 79 FSQGIQYLYPRSSDTSEQNAGNSKDLSIISSHM--YRRFRNVDETLIEEFYKLYQREESL 136
Query: 116 I----ACSLLSGSLSMALCYIQRV--------FRSGLLHPQPRGSPDGPE--QYVAIMNA 161
I S LSG+++ AL Y R+ RS LL S + E QY+ IMN
Sbjct: 137 IDKPVQKSTLSGAMAAALTYTNRLTKEFESISLRSRLLVITCGSSREKDEIFQYIPIMNC 196
Query: 162 IFSAQRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSR 220
IFSA + PID +G + S FLQQ + T GV+ + +G+ QYL T D R
Sbjct: 197 IFSATKLKCPIDVIKIGGNKQSTFLQQTTDATNGVYIHLESTNGIIQYLSTAMSIDPSLR 256
Query: 221 NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 273
+ P VDFR SC+ + +GYICSVCL + KC C S F +
Sbjct: 257 QIIVRPTQGSVDFRTSCYLTGKVVAIGYICSVCLCVLSIIPPGNKCPACDSQFDE 311
>gi|441630273|ref|XP_004089524.1| PREDICTED: general transcription factor IIH subunit 3 isoform 4
[Nomascus leucogenys]
Length = 162
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 84/126 (66%), Gaps = 1/126 (0%)
Query: 146 RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGL 205
+ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L
Sbjct: 19 KAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSL 77
Query: 206 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCS 265
QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+
Sbjct: 78 LQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICT 137
Query: 266 TCGSVF 271
TC + F
Sbjct: 138 TCETAF 143
>gi|428673526|ref|NP_001258797.1| general transcription factor IIH subunit 3 isoform d [Homo sapiens]
Length = 162
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 84/126 (66%), Gaps = 1/126 (0%)
Query: 146 RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGL 205
+ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L
Sbjct: 19 KAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSL 77
Query: 206 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCS 265
QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+
Sbjct: 78 LQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICT 137
Query: 266 TCGSVF 271
TC + F
Sbjct: 138 TCETAF 143
>gi|441630267|ref|XP_004089522.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Nomascus leucogenys]
Length = 265
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 136/285 (47%), Gaps = 66/285 (23%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
++Y + + +G++ + S +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKGDI 124
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQ 166
G+ +LL+GSL+ ALCYI R MN
Sbjct: 125 KGQHTE------TLLAGSLAKALCYIHR------------------------MNKEIKDN 154
Query: 167 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLP 226
+ M S L A ITGG++ K Q+ L QYLL +F D R+ L LP
Sbjct: 155 QEM-----------KSRIL--ACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILP 201
Query: 227 KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 202 PPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 246
>gi|428673522|ref|NP_001258795.1| general transcription factor IIH subunit 3 isoform b [Homo sapiens]
Length = 265
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 137/279 (49%), Gaps = 54/279 (19%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPI 172
+G+ +LL+GSL+ ALCYI R MN + M
Sbjct: 125 KGQHTETLLAGSLAKALCYIHR------------------------MNKEVKDNQEM--- 157
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 232
S L A ITGG++ K Q+ L QYLL +F D R+ L LP PV VD
Sbjct: 158 --------KSRIL--ACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVD 207
Query: 233 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 208 YRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 246
>gi|302830812|ref|XP_002946972.1| hypothetical protein VOLCADRAFT_79384 [Volvox carteri f.
nagariensis]
gi|300268016|gb|EFJ52198.1| hypothetical protein VOLCADRAFT_79384 [Volvox carteri f.
nagariensis]
Length = 141
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 84/118 (71%)
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 213
QY+ +MNAIFSAQR+ V +D+ L ++S+FLQQA+++TGG++ KP L LL F
Sbjct: 2 QYIPVMNAIFSAQRAEVLLDAVVLATEDSSFLQQAAHLTGGLYFKPAGAGALLGLLLNYF 61
Query: 214 GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
D +R L + + +GVDFRASCFCHK I+ GY+CSVCLSI+C+ + CSTCG+ F
Sbjct: 62 VCDTSTRKQLDVAQELGVDFRASCFCHKYVIETGYVCSVCLSIFCQPSRACSTCGTAF 119
>gi|389644740|ref|XP_003720002.1| RNA polymerase II transcription factor B subunit 4 [Magnaporthe
oryzae 70-15]
gi|351639771|gb|EHA47635.1| RNA polymerase II transcription factor B subunit 4 [Magnaporthe
oryzae 70-15]
gi|440470636|gb|ELQ39698.1| RNA polymerase II transcription factor B subunit 4 [Magnaporthe
oryzae Y34]
gi|440480828|gb|ELQ61470.1| RNA polymerase II transcription factor B subunit 4 [Magnaporthe
oryzae P131]
Length = 380
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 151/331 (45%), Gaps = 80/331 (24%)
Query: 11 DDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+VV++DTNP W+ L S+ + ++L F+NA L L+ + V VIA +
Sbjct: 17 DTPSLLVVVIDTNPRAWALLRDVLPISKAIANILVFVNAHLALSSSHSVAVIAAHTHRAV 76
Query: 69 YVY------------DSSSTGNQSVGNGRMPS------------LCATLLQNLEEFMNKD 104
++Y D T + + + P+ + +TLL +L + +
Sbjct: 77 WLYPSPPKPPVRDANDVEMTDADAGKDKKQPATSSANKLPQFAHIESTLLSSLHDLI--- 133
Query: 105 EQLGKQEPEGRIACSLLSGSLSMALCYIQR----VFRSGLLHPQPRGSPDGP-------- 152
Q + +L+SG LS+AL +I + +G+ + P P
Sbjct: 134 -QSTTKAELASTTTTLISGGLSLALAHINKTKELAMATGI--DATKAEPAAPGVSASTAG 190
Query: 153 -----------------------------EQYVAIMNAIFSAQRSMVPIDSCYL-GAQNS 182
+QY+ MNA+F+A + VP+D L GA +
Sbjct: 191 AGVNGGGGSAARTVLHSRILTVSVSDSSADQYIPTMNAVFAASSAGVPLDVLALRGA--A 248
Query: 183 AFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD--LHSRNFLQLPKPVGVDFRASCFCH 240
FLQQ ++ITGG + + G+ YL+T F + + S+ L P VDFRA+CFCH
Sbjct: 249 PFLQQGAFITGGTYIAATEPRGILAYLMTGFASTSGVGSQGLLLSPGSESVDFRAACFCH 308
Query: 241 KNTIDMGYICSVCLSIYCK--HLKKCSTCGS 269
+ +D GY+CSVCLSI+C+ +C TCGS
Sbjct: 309 RRAVDTGYVCSVCLSIFCEVPSGAECLTCGS 339
>gi|367012173|ref|XP_003680587.1| hypothetical protein TDEL_0C04870 [Torulaspora delbrueckii]
gi|359748246|emb|CCE91376.1| hypothetical protein TDEL_0C04870 [Torulaspora delbrueckii]
Length = 325
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 137/303 (45%), Gaps = 32/303 (10%)
Query: 3 SAPSKLYSDDV-SLVVVLLDTNPFFWS------SSSLSFSQFLTHVLAFLNAILTLNQLN 55
+ P Y+++ SL+ +++DT P W+ S + + ++ FLNA L N N
Sbjct: 12 TKPKSQYAEETPSLLTLVIDTAPKLWAELDDEKSQNANIISVFESIIVFLNAHLAFNSSN 71
Query: 56 QVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDEQLGK---- 109
QV VIA Y+Y S+ GN + +++ N +F N DE L +
Sbjct: 72 QVAVIAAHSQGIKYLYPKSNVGNNKATSSSTSGKDLSIINNDMYRQFRNVDETLVEELYK 131
Query: 110 --QEPEGRI----ACSLLSGSLSMALCYIQRVFRS-GLLHPQPR---------GSPDGPE 153
QE + +I S L+G +S L YI R+ R + + R G D
Sbjct: 132 LFQEEKNQIDKVTQKSTLAGGISAGLTYINRISRELATIALKSRLLVITCGSGGGRDEIF 191
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 212
QY+ IMN IFSA + PID +G + S FLQQ + T GV+ + GL QYL T
Sbjct: 192 QYIPIMNCIFSATKLKCPIDVVKIGGHRESTFLQQTTDATNGVYLHLESTQGLIQYLSTA 251
Query: 213 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 270
D R + P VDFR SC+ + +GYICSVCL + KC C S
Sbjct: 252 MFIDPSLRPIIVKPNQGSVDFRTSCYLTGKVVAIGYICSVCLCVLSILPPGNKCPACDSE 311
Query: 271 FGQ 273
F +
Sbjct: 312 FDE 314
>gi|402084346|gb|EJT79364.1| RNA polymerase II transcription factor B subunit 4 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 382
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 154/325 (47%), Gaps = 63/325 (19%)
Query: 9 YSDDV-SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+ D++ SL+ V++DTNP W+ L S+ + ++L ++NA L L+ LNQV +IA +
Sbjct: 17 HVDEIPSLLAVVVDTNPSAWALLRDVLPISKAIANILIYVNAHLALSNLNQVAIIAAHAH 76
Query: 66 SCDYVYDSSSTG---NQSVGNGRMPSLCAT---------LLQNLEEFMNKD-------EQ 106
++Y S + G+ M AT + L +F + + +
Sbjct: 77 RARWLYPSPPNPRPRKDAAGDVEMADAAATSQNSRTRAAAAKKLPQFAHIESAVLDSLQA 136
Query: 107 LGKQEPEGRIA---CSLLSGSLSMALCYIQRVFRSGL--------LHPQPRGSPDGPE-- 153
L ++ +A +L+SG+L++AL +I +V + L GS P
Sbjct: 137 LIRETSPAEVASTTTTLVSGALTLALAHINKVREAALGAGFAERSAAAASPGSTAIPAGA 196
Query: 154 ------------------------QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQAS 189
QY+ MNA+F+A + VP+D L N++FLQQ S
Sbjct: 197 GNVGAAAAVRARILVVSVSDSSASQYIPTMNAVFAASHASVPVDVVALRG-NASFLQQGS 255
Query: 190 YITGGVHHKPQQLDGLFQYLLTIFGTDLHS-RNFLQLPKPVGVDFRASCFCHKNTIDMGY 248
YITGG ++ GL YL+T F + + L P VDFRA+CFCH+ +D G+
Sbjct: 256 YITGGNFIHAKEPRGLLTYLMTGFPVGGGAVSDMLIGPGTESVDFRAACFCHRKALDTGF 315
Query: 249 ICSVCLSIYCKHL--KKCSTCGSVF 271
+CSVCLSI+C+ +C TCGS
Sbjct: 316 VCSVCLSIFCEAPPENECLTCGSAL 340
>gi|146416891|ref|XP_001484415.1| hypothetical protein PGUG_03796 [Meyerozyma guilliermondii ATCC
6260]
Length = 378
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 154/334 (46%), Gaps = 53/334 (15%)
Query: 9 YSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
++DD SL+ V+LD NP W + + + + ++ F+NA L+LN N+V + +
Sbjct: 40 FTDDPSLLTVILDLNPLGWYNIRNRTTVKEVTKSLIVFMNAHLSLNNSNRVAFLTASPSG 99
Query: 67 CDYVY-----DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLL 121
++Y D T N V G L E N+ + + + E S +
Sbjct: 100 ARFLYPNTMSDQKDTANTLVNRGMYRQFRIVDETVLLELNNEFQAVAQSELTDY--KSTV 157
Query: 122 SGSLSMALCYIQRVFR---------------------------------SGLLHPQPR-- 146
SG+LS+AL Y R+ S L+ + R
Sbjct: 158 SGALSLALTYTHRMLTLDESISTTTASAISTSTNVASNSSAAGAGSTGASNLISMKSRIL 217
Query: 147 -GSPDGPE--QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLD 203
SPD + +Y+ IMN+IF+AQ+ V ID LG+++ ++LQQA+ T GV+ Q +
Sbjct: 218 VVSPDDNDDIRYIPIMNSIFAAQKMKVSIDVVKLGSKDVSYLQQAADATNGVYLHVQNPE 277
Query: 204 GLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIY--CKHL 261
GL Q L T + + R + LP V++RASCF +ID+G++CSVCL I L
Sbjct: 278 GLIQVLSTAYFIEPSLRPLVVLPTNSNVNYRASCFVTGKSIDLGFVCSVCLCIMSIIPDL 337
Query: 262 KKCSTCGSVFGQ---AQTQSDEPSATNRKRKTTD 292
KC TC S F +Q + P+ RK++ D
Sbjct: 338 GKCPTCQSEFDPNILSQLRR-SPAVLPRKKRKVD 370
>gi|320167472|gb|EFW44371.1| general transcription factor IIH [Capsaspora owczarzaki ATCC 30864]
Length = 381
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 94/162 (58%), Gaps = 11/162 (6%)
Query: 119 SLLSGSLSMALCYIQR---------VFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSM 169
S L SLS+ALC+I + V RS +L + D P YV +MN IF+AQ+
Sbjct: 210 SQLVSSLSVALCHINKTRRALPPGVVCRSRILVVH--AAEDVPAHYVQLMNTIFAAQKLG 267
Query: 170 VPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 229
V ID+ L +S FLQQA +T G + K Q D L Q L+ D +R L LP+P
Sbjct: 268 VIIDALILTPDDSGFLQQAVDLTKGAYIKLQSNDDLVQTLMMFGLADRAARELLILPQPT 327
Query: 230 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
VD+R++CFCH+ +D+G++CSVCLSI+C C TCG+ F
Sbjct: 328 VVDYRSACFCHRRIVDVGFVCSVCLSIFCDQRGLCPTCGTRF 369
>gi|225712364|gb|ACO12028.1| General transcription factor IIH subunit 3 [Lepeophtheirus
salmonis]
gi|290562788|gb|ADD38789.1| General transcription factor IIH subunit 3 [Lepeophtheirus
salmonis]
Length = 305
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 140/273 (51%), Gaps = 26/273 (9%)
Query: 15 LVVVLLDTNP----FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
L+++++D NP F ++L+ L ++L F NA L L+ N + + + + ++
Sbjct: 17 LLIIVMDMNPNQKLFLHDPTALT--SVLDNLLCFANAHLMLHPSNALATLGSMASGSYFL 74
Query: 71 Y---DSSSTGN---QSVGNGRMPSLCATLLQN-LEEFMNKDEQLGKQEPEGRIACSLLSG 123
Y D + N Q G + +L T +++ E + + + Q S LSG
Sbjct: 75 YPPPDDPAADNEIRQLDGQYELFTLVETTVRSKFIELLQSEAGISSQTD------SPLSG 128
Query: 124 SLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 178
SL+MAL YI R R + R S D QY+ MN F+AQ+ V +D+C L
Sbjct: 129 SLAMALSYINRR-RKENMDLSARILVITASGDTASQYMNYMNVFFTAQKLDVLLDTCMLQ 187
Query: 179 AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCF 238
+S LQQ + ITGG++ L Q+LL IF R L LP VDFRA+CF
Sbjct: 188 I-DSPLLQQGADITGGMYFNVPDNAALLQFLLWIFLPSAEMRPQLGLPSANKVDFRAACF 246
Query: 239 CHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
CH+ +D+G++CSVCLSI+CK C+TC ++F
Sbjct: 247 CHRQLVDIGFVCSVCLSIFCKFSPICTTCQTIF 279
>gi|255715715|ref|XP_002554139.1| KLTH0E15180p [Lachancea thermotolerans]
gi|238935521|emb|CAR23702.1| KLTH0E15180p [Lachancea thermotolerans CBS 6340]
Length = 337
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 137/311 (44%), Gaps = 36/311 (11%)
Query: 14 SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V++DT P W S + L ++ FLN+ LT N NQV VIA +
Sbjct: 24 SLLTVVVDTTPKAWAELDRESEHEGNLISALQSLIVFLNSHLTFNSANQVAVIAAHSSGI 83
Query: 68 DYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL-----------GKQEPEGRI 116
Y+Y +ST +Q R L +F N DE + GK+E
Sbjct: 84 KYLYPVTST-SQDETAARSADLSIINSDMYRQFRNVDETVLEELYKLLQEEGKREQPSGF 142
Query: 117 ACSLLSGSLSMALCYIQRVFR---SGLLHPQ-------PRGSPDGPEQYVAIMNAIFSAQ 166
S LSG++S YI R+ + S L + G D QY+ IMN IFSA
Sbjct: 143 QKSTLSGAMSAGFTYINRIIKEQSSASLKARLMVVTCGSSGGKDEVFQYIPIMNCIFSAT 202
Query: 167 RSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 225
+ P+D +G +Q S FLQQA+ T GV+ +GL QYL T D R +
Sbjct: 203 KLKCPVDVVKIGGSQESTFLQQATDATNGVYLHVPSTEGLIQYLTTAMFIDPSLRPIIVK 262
Query: 226 PKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQAQTQSDE--- 280
P VDFR SC+ + +G++CSVCL + +C C S F + T +
Sbjct: 263 PNQGSVDFRTSCYLTGKVVAVGFVCSVCLCVLSVIPPGNRCPACDSEFDEHVTTKLKKKP 322
Query: 281 --PSATNRKRK 289
P +KRK
Sbjct: 323 VVPGMIQKKRK 333
>gi|189241296|ref|XP_975136.2| PREDICTED: similar to transcription factor TFIIH-subunit, putative
[Tribolium castaneum]
gi|270013170|gb|EFA09618.1| hypothetical protein TcasGA2_TC011739 [Tribolium castaneum]
Length = 232
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 121/205 (59%), Gaps = 19/205 (9%)
Query: 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSG----LLHPQ--- 144
T+ QNL + + ++ E SLL+G+++MALCYI R+ R+ +L+ +
Sbjct: 37 TIKQNLAKLLATEKSTLVTE-------SLLAGAIAMALCYIARIQRTKPPGCVLNSRILV 89
Query: 145 PRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG 204
GS D QY+ MN F+AQ+ + ID C L Q+ + LQQ ITGG++ K QL G
Sbjct: 90 VTGSGDSASQYMNYMNVFFTAQKQGIVIDVCALD-QHLSLLQQGCDITGGLYLKVPQLQG 148
Query: 205 LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKC 264
L QYLL +F + R L LP PV VD+RA+CFCH+ ID+GY+CSVCLSI+CK C
Sbjct: 149 LLQYLLWVFLPEPPIRQKLVLPPPVKVDYRAACFCHRELIDIGYVCSVCLSIFCKFSPIC 208
Query: 265 STCGSVFGQAQTQSDEPSATNRKRK 289
+TC +VF + +P +KRK
Sbjct: 209 TTCHTVFKIPGPLAVKP----KKRK 229
>gi|425772016|gb|EKV10443.1| Transcription factor TFIIH subunit Tfb4, putative [Penicillium
digitatum Pd1]
gi|425777277|gb|EKV15458.1| Transcription factor TFIIH subunit Tfb4, putative [Penicillium
digitatum PHI26]
Length = 387
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 147 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 206
GS D QY+ IMN+IF+ QR +PID C L ++ FLQQAS T GV+ + GL
Sbjct: 224 GSTDAAHQYIPIMNSIFACQRLNIPIDVCKLSG-DAVFLQQASDATKGVYMALAEPRGLL 282
Query: 207 QYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL--KKC 264
QYL+ F D SR L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C C
Sbjct: 283 QYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVDVGFVCSICLSIFCGPPPGSDC 342
Query: 265 STCGS 269
TCG+
Sbjct: 343 MTCGT 347
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ SL S+ + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVIDTNPHAWAILEHSLPLSKAIANILVFINAHLACNYANEVAVVASHCQKAAWLY 79
Query: 72 DS------------SSTGNQSVGNGRMPS---------LCATLLQNLEEFMNKDEQLGKQ 110
S S + + P + + +NL+E M D G
Sbjct: 80 PSHNAPRNRTADHDSDVAMNGASDTQPPETNKYRPFRIVEEQVTRNLKELM--DSTTG-D 136
Query: 111 EPEGRIACSLLSGSLSMALCYIQR 134
+ G ++ ++L+G+L++AL + R
Sbjct: 137 DLRGNMS-TMLAGALTLALSHTNR 159
>gi|190347434|gb|EDK39698.2| hypothetical protein PGUG_03796 [Meyerozyma guilliermondii ATCC
6260]
Length = 378
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 154/336 (45%), Gaps = 53/336 (15%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+ ++DD SL+ V+LD NP W + + + + ++ F+NA L+LN N+V +
Sbjct: 38 ETFTDDPSLLTVILDLNPLGWYNIRNRTTVKEVTKSLIVFMNAHLSLNNSNRVAFLTASP 97
Query: 65 NSCDYVY-----DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
+ ++Y D T N V G L E N+ + + + E S
Sbjct: 98 SGARFLYPNTMSDQKDTANTLVNRGMYRQFRIVDETVLSELNNEFQAVAQSELTDY--KS 155
Query: 120 LLSGSLSMALCYIQRVFR---------------------------------SGLLHPQPR 146
+SG+LS+AL Y R+ S L+ + R
Sbjct: 156 TVSGALSLALTYTHRMLTLDESISTTTASAISTSTNVASNSSAAGAGSTGASNLISMKSR 215
Query: 147 ---GSPDGPE--QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ 201
SPD + +Y+ IMN+IF+AQ+ V ID LG+++ ++LQQA+ T GV+ Q
Sbjct: 216 ILVVSPDDNDDIRYIPIMNSIFAAQKMKVSIDVVKLGSKDVSYLQQAADATNGVYLHVQN 275
Query: 202 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIY--CK 259
+GL Q L T + + R + LP V++RASCF +ID+G++CSVCL I
Sbjct: 276 PEGLIQVLSTAYFIEPSLRPLVVLPTNSNVNYRASCFVTGKSIDLGFVCSVCLCIMSIIP 335
Query: 260 HLKKCSTCGSVFGQ---AQTQSDEPSATNRKRKTTD 292
KC TC S F +Q + P+ RK++ D
Sbjct: 336 DSGKCPTCQSEFDPNILSQLRR-SPAVLPRKKRKVD 370
>gi|393217350|gb|EJD02839.1| Tfb4-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 432
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 143/317 (45%), Gaps = 66/317 (20%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSL-------SFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D+ S + ++LD P W SSL SF FL LAFLN LTL N +VV
Sbjct: 29 DNPSHLAIILDLFPTQWHLSSLPKNAYPHSFKSFLAQTLAFLNFHLTLKHENALVVYGAF 88
Query: 64 YNSCDYVYDSSSTGNQ------SVGNGRMP------SLCATLLQNLEEFMNKDEQLGKQE 111
+Y S+ + +V N +P ++ + + L+ + DE+ +Q
Sbjct: 89 PGKSVLLYSSTDHKAEGADDSIAVPNTYLPFKVVDTAVTKRISEELDAMSDFDEEALRQ- 147
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRSG-------------------------------L 140
L G+L+ ALC F +
Sbjct: 148 ---------LVGALTKALCRTGLSFLKPCSNLDLLDERAVIDINWLVNPTATSIDSDVPV 198
Query: 141 LHPQPR-----GSPDGPEQYVAIMNAIFSAQR-SMVPIDSCYLGAQNSAFLQQASYITGG 194
+ P+PR SPD Y+ +MN+IFSAQ V ID C + A ++ FLQQA+++TGG
Sbjct: 199 VSPEPRIVILSVSPDLSTSYIPLMNSIFSAQNLCKVAIDVCKIYAPDAVFLQQAAHLTGG 258
Query: 195 VHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCL 254
+ ++ D L Q+LL F R + +P +DFR +CF HK +D+G++CSV L
Sbjct: 259 SYIYLERRDALLQHLLMTFLPTPSIRQPIAVPTQDKIDFRVACFFHKTIVDIGFVCSVRL 318
Query: 255 SIYCKHLKKCSTCGSVF 271
SI C+ + CSTC + F
Sbjct: 319 SILCQLVPVCSTCRTKF 335
>gi|358366716|dbj|GAA83336.1| transcription factor TFIIH complex subunit [Aspergillus kawachii
IFO 4308]
Length = 386
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 78/119 (65%), Gaps = 3/119 (2%)
Query: 153 EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 212
QY+ IMNAIF+ QR +PID C + ++ FLQQAS T GV+ + GL QYL+
Sbjct: 227 HQYIPIMNAIFACQRLHIPIDVCKVSG-DAVFLQQASDATKGVYMALDEPKGLLQYLMMA 285
Query: 213 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGS 269
F D SR L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+ L C TCG+
Sbjct: 286 FLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVDVGFVCSICLSIFCEPLGDGVCLTCGT 344
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ S +L S + ++L F+NA L N N+V V+++ + ++Y
Sbjct: 20 SLLTIILDTNPHAWALLSPTLPLSTAIANILVFINAHLASNYANEVAVVSSHTSQATWLY 79
Query: 72 DSSSTGNQSVGN 83
+ N + N
Sbjct: 80 PVEKSPNSNSNN 91
>gi|255070041|ref|XP_002507102.1| RNA polymerase II transcription factor B subunit 4 [Micromonas sp.
RCC299]
gi|226522377|gb|ACO68360.1| RNA polymerase II transcription factor B subunit 4 [Micromonas sp.
RCC299]
Length = 291
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 127/254 (50%), Gaps = 11/254 (4%)
Query: 28 SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMP 87
S L L ++ F++ L LN N +VV+A C Y+Y+S + + + P
Sbjct: 35 SDDGLGIMHTLRDLVLFISCYLALNLQNDLVVLALHNGDCHYLYESPKSKLRRGVRVQPP 94
Query: 88 --SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQP 145
+C ++ + + Q + + S L+ LSMALC+IQR+ +G
Sbjct: 95 VSDVCKEIITRIFRISSSPLQSPSGDASSSGSESPLAAGLSMALCHIQRL-GTGSFRGLR 153
Query: 146 R-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 200
R SP QY+ +MN IF+AQ++ V IDS L +S L+QA+ +T G+H K Q
Sbjct: 154 RIFCLLRSPVSQRQYIPMMNVIFAAQQAFVTIDSYSLCDMHSDILEQAANMTNGLHRKLQ 213
Query: 201 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 260
+ L Q+LLT R+ L K GVDF+ CFCHK T+ G++CS CLSI C
Sbjct: 214 KDGELGQHLLTFSSWSQTCRHSLLPGKQCGVDFKTFCFCHKKTLQRGFVCSACLSISCVA 273
Query: 261 LK---KCSTCGSVF 271
LK C TC + F
Sbjct: 274 LKTGGDCMTCAANF 287
>gi|448533948|ref|XP_003870733.1| TFIIH complex subunit [Candida orthopsilosis Co 90-125]
gi|380355088|emb|CCG24605.1| TFIIH complex subunit [Candida orthopsilosis]
Length = 408
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 156/341 (45%), Gaps = 59/341 (17%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+D+ SL+ ++LD +P W S S S +L FLN L++N NQV I + +
Sbjct: 64 NDEPSLLTIILDISPRGWYSIKDSTSLQDVAKSLLVFLNGHLSINNSNQVSFIVSSPQTS 123
Query: 68 DYVY-----DSSSTGNQSVGNG---RMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
++Y +ST + + G + ++ +L+ L F+ + ++ R S
Sbjct: 124 KFLYPHPSNQKTSTTDSKISPGMYRQFKNVNEVVLEELNRFIKETSEISVVSTARR--NS 181
Query: 120 LLSGSLSMALCY----------IQRVFRSGL--------------------LHPQPRGS- 148
++G++SMAL Y IQ S + + P S
Sbjct: 182 SITGAISMALTYTYRMSILDQSIQTTTASAINTSSINAKQSDASSSSTTAGIVPSTSTSI 241
Query: 149 ---------PDGPE--QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHH 197
DG + Y+ +MN IF+AQ+ V ID LG +NS++LQQAS T GV+
Sbjct: 242 KSRILIVSANDGDDSINYIPLMNCIFTAQKLKVSIDVAKLGFKNSSYLQQASDATNGVYL 301
Query: 198 KPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIY 257
+ G+ Q L T F + + R ++ LP V+++ASCF K +D+G++CSVCL I
Sbjct: 302 HIEDPQGIIQVLTTAFFIEPNLRPYVILPTNTQVNYKASCFITKRPVDVGFVCSVCLCIM 361
Query: 258 CK--HLKKCSTCGSVFGQA---QTQSDEPSATNRKRKTTDA 293
K +KC C S F + + D T +KRK D+
Sbjct: 362 SKIPEDEKCPACSSEFDKRSIYELTKDPQVVTRKKRKLDDS 402
>gi|365982181|ref|XP_003667924.1| hypothetical protein NDAI_0A05260 [Naumovozyma dairenensis CBS 421]
gi|343766690|emb|CCD22681.1| hypothetical protein NDAI_0A05260 [Naumovozyma dairenensis CBS 421]
Length = 339
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 133/298 (44%), Gaps = 30/298 (10%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVV 59
S L + SL+ V++D P W+ + S L ++ FLNA L N NQV V
Sbjct: 16 SSLSEETPSLLTVIIDITPKLWTELDQETEENGSLISVLKSLIVFLNAHLAFNSSNQVAV 75
Query: 60 IATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ------EPE 113
IA+ Y+Y ++ G+ + + L F N DE L ++ +
Sbjct: 76 IASHSQGIKYLYPQNTKGSDEESSSKTKDLSIINKDMYRRFRNVDETLVEELYTLFEKER 135
Query: 114 GRI----ACSLLSGSLSMALCYIQRVFRS----------GLLHPQPRG-SPDGPEQYVAI 158
+I S LSG++S L YI R+ R +L +G S D QY+ I
Sbjct: 136 DQIDKFKQKSTLSGAMSAGLTYINRLSRELEAISLKSRLMVLTCGGKGESKDEIFQYIPI 195
Query: 159 MNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDL 217
MN IFSA + PID +G ++ S FLQQ + T GV+ + GL QYL T D
Sbjct: 196 MNCIFSANKIKCPIDVVKIGGSERSTFLQQTTDATNGVYLHVESSKGLIQYLSTAMFIDP 255
Query: 218 HSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 273
R + P VDFR SC+ + +GYICSVCL + KC C S F +
Sbjct: 256 SLRQIIVKPNHGSVDFRTSCYLTGKVVAIGYICSVCLCVLSIIPPGNKCPACDSEFDE 313
>gi|444315902|ref|XP_004178608.1| hypothetical protein TBLA_0B02470 [Tetrapisispora blattae CBS 6284]
gi|387511648|emb|CCH59089.1| hypothetical protein TBLA_0B02470 [Tetrapisispora blattae CBS 6284]
Length = 340
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 136/307 (44%), Gaps = 37/307 (12%)
Query: 3 SAPSKLYSDDVSLVVVLLDTNPFFWS-----------SSSLSFSQFLTHVLAFLNAILTL 51
+A ++ + SL+ V++DT P W+ + + + ++ FLN+ L
Sbjct: 12 TARPQVVEETPSLLTVVIDTAPKLWTQFDKEDPDDNTNKEPQLLRVIRAIVVFLNSHLAF 71
Query: 52 NQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ- 110
N NQV VIA Y+Y N S +L +F N DE L +
Sbjct: 72 NTNNQVAVIAAHSQGIKYLYPKEDNNNVSESTKEKSNLSIINKDMYRQFRNVDESLVDEL 131
Query: 111 ----EPEGRIA-----CSLLSGSLSMALCYIQRV---------FRSGLLHPQ--PRGSPD 150
+ E + S +SG++S AL Y+ R+ F+S LL S D
Sbjct: 132 FSLFQEESKFIDKKSQKSTISGAMSCALTYVNRITKQFNDASIFKSRLLVITCGSGRSKD 191
Query: 151 GPEQYVAIMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGLFQYL 209
QY+ IMN IFSA + PID +G + S FLQQ + T GV+ + GL QYL
Sbjct: 192 EVFQYIPIMNCIFSATKMKCPIDVVKIGGHEKSTFLQQTTDATNGVYLYVENTKGLIQYL 251
Query: 210 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVC---LSIYCKHLKKCST 266
T D R+ + P VDFR SCF + +GYICSVC LSI K+ KC
Sbjct: 252 STAMFIDSSLRSIIVKPNHGVVDFRTSCFLTGRVVAVGYICSVCLCVLSIVPKN-NKCPA 310
Query: 267 CGSVFGQ 273
C S F +
Sbjct: 311 CDSKFDE 317
>gi|281211236|gb|EFA85402.1| general transcription factor IIH [Polysphondylium pallidum PN500]
Length = 276
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 46/243 (18%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS---------------LSFSQFLTHVLAFLNAILTLNQLN 55
DD SL+V++ D N + W + ++ F+ ++L F+NA L LNQ N
Sbjct: 12 DDNSLLVIVADFNIYSWGQRAQTVQSEGRDGRRFPLITLPTFIENLLVFINAYLMLNQEN 71
Query: 56 QVVVIATGYNSCDYVY----DSSSTGNQSVGN------GRMPSLCATLLQNLEEFMNKDE 105
Q+ +I++ +VY + T ++ + R+ ++C L+NL++
Sbjct: 72 QIALISSVIGESYFVYPPQPQQALTDHRCISEQIQSSLERINTIC---LENLDK------ 122
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRG-------SPDGPEQYVAI 158
+E + + S S ++S+ALCYI R+ + P R SPD QY+ +
Sbjct: 123 --RSEEQQQQDCTSSFSAAMSLALCYINRIKKE---FPSLRARILVFNLSPDVSTQYIPV 177
Query: 159 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 218
MN IFSAQ+ +P+DSC L +S FLQQAS++T G++ KPQ+ + L QYLL+ F D
Sbjct: 178 MNCIFSAQKQSIPVDSCVLSTTDSTFLQQASHLTNGIYLKPQRQENLSQYLLSTFLVDSF 237
Query: 219 SRN 221
SRN
Sbjct: 238 SRN 240
>gi|448098480|ref|XP_004198937.1| Piso0_002332 [Millerozyma farinosa CBS 7064]
gi|359380359|emb|CCE82600.1| Piso0_002332 [Millerozyma farinosa CBS 7064]
Length = 376
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 155/353 (43%), Gaps = 70/353 (19%)
Query: 5 PSKLYSDDVSLVVVLLDTNPFFW--SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
P++ DD SL+ V+LD P W ++ + +L FLNA L+LN NQV I
Sbjct: 14 PTQPTVDDPSLLTVILDLTPHGWFKIKHHITVQEVTKALLVFLNAHLSLNNSNQVAFIVC 73
Query: 63 GYNSCDYVY-----------DSSSTGNQSVGNGRMPSLCATLLQN---------LEEFMN 102
+ ++Y D+ S+ ++ P+L T + LEE
Sbjct: 74 SPDGAKFLYPNPGKNFDGIQDNGSSKGETGNKSSNPNLVNTEMYRQFRIVDEAVLEELNE 133
Query: 103 KDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR--------------------SGLLH 142
+ L K + S LSG+LS+AL Y R+ SG +
Sbjct: 134 VLKSLSKSNSVNKTR-STLSGALSLALTYTNRMLNLDQSISTTTASAFNATTKSTSGTSN 192
Query: 143 PQP----------------------RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 180
+ D +Y+ IMN++F+AQ+ +PID LG+
Sbjct: 193 VTSSGSSASAVSTNYTSMLSRILVISANDDDDVKYIPIMNSMFAAQKMRLPIDVAKLGSI 252
Query: 181 NSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCH 240
+S++LQQAS T G++ + ++ +GL Q L T F + R + LP V +RASCF
Sbjct: 253 SSSYLQQASDATNGIYLQVEKPEGLIQTLCTAFFIESSIRPLIILPSNSNVSYRASCFIT 312
Query: 241 KNTIDMGYICSVCLSIY--CKHLKKCSTCGSVFGQA---QTQSDEPSATNRKR 288
++D+GY+CSVCL I KC TC S F ++ Q Q+ +T R++
Sbjct: 313 GKSVDLGYVCSVCLCIMSIIPTDAKCPTCNSHFDKSILNQLQNSVVLSTKRRK 365
>gi|448102380|ref|XP_004199788.1| Piso0_002332 [Millerozyma farinosa CBS 7064]
gi|359381210|emb|CCE81669.1| Piso0_002332 [Millerozyma farinosa CBS 7064]
Length = 376
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 155/357 (43%), Gaps = 70/357 (19%)
Query: 5 PSKLYSDDVSLVVVLLDTNPFFW--SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
P++ DD SL+ V+LD P W ++ + +L FLNA L+LN NQV I
Sbjct: 14 PAQPTVDDPSLLTVILDLTPHGWFKIKDHITVQEVTKALLVFLNAHLSLNNTNQVAFIVC 73
Query: 63 GYNSCDYVYDSSST---GNQSVGNGR--------MPSLCATLLQN---------LEEFMN 102
+ ++Y + G Q GN + P+L T + LEE
Sbjct: 74 SPDGAKFLYPNPGKNFDGIQDNGNSKGEAGTKTPSPNLVNTEMYRQFRIVDEAVLEELNE 133
Query: 103 KDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR--------------------SGLLH 142
+ L + S LSG+LS+AL Y R+ SG +
Sbjct: 134 VIKSLSNSNSVNKTR-STLSGALSLALTYTNRMLNLDQSISTTTASAFNATTKSTSGTTN 192
Query: 143 PQP----------------------RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 180
+ D +Y+ IMN++F+AQ+ +PID LG+
Sbjct: 193 ATGSGSSASAVSTNYTSMLSRILVISANDDDDVKYIPIMNSMFAAQKMRLPIDVAKLGSV 252
Query: 181 NSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCH 240
+S++LQQAS T G++ + + +GL Q L T F + R + LP V +RASCF
Sbjct: 253 SSSYLQQASDATNGIYLQVENPEGLIQTLCTAFFIESSIRPLIILPSNSNVSYRASCFIT 312
Query: 241 KNTIDMGYICSVCLSIY--CKHLKKCSTCGSVFGQA---QTQSDEPSATNRKRKTTD 292
++D+GY+CSVCL I KC TC S F ++ Q Q+ +T R++ T+
Sbjct: 313 GKSVDLGYVCSVCLCIMSIIPTDAKCPTCNSHFDKSILNQLQNSVVLSTKRRKIDTN 369
>gi|45187550|ref|NP_983773.1| ADL323Cp [Ashbya gossypii ATCC 10895]
gi|62901344|sp|Q75B93.1|TFB4_ASHGO RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|44982288|gb|AAS51597.1| ADL323Cp [Ashbya gossypii ATCC 10895]
gi|374106985|gb|AEY95893.1| FADL323Cp [Ashbya gossypii FDAG1]
Length = 341
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 128/299 (42%), Gaps = 32/299 (10%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
+L + SL+ +++DTNP W+ Q L + FLNA L+ N NQV VI
Sbjct: 17 QLVEETPSLLTLVIDTNPKLWAEFDREVGKKGQLMQVLKSTIVFLNAHLSFNNSNQVSVI 76
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE-----------QLGK 109
A Y+Y + S + F N DE Q K
Sbjct: 77 AACSRGIKYLYPQADDKEGSTKKKKSEDRSIINRNMYRGFRNVDEAVVEELYRVFQQESK 136
Query: 110 QEPEG--RIACSLLSGSLSMALCYIQRV--------FRSGLLHPQ--PRGSPDGPEQYVA 157
Q +G + S LSG++S L YI R+ +S LL S D QY+
Sbjct: 137 QLEDGVPQPFRSTLSGAMSAGLTYINRITHETEGVSLKSRLLVITCGSSASKDEVFQYIP 196
Query: 158 IMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
IMN IFSA + PID +G + S FLQQA+ T G + DGL QYL T D
Sbjct: 197 IMNCIFSATKMKCPIDVVKVGGVKESTFLQQATDATNGNYLHVANTDGLIQYLSTAMFID 256
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 273
R ++ P VDFR SC+ + +G++CSVCL + KC C S F +
Sbjct: 257 PSLRQWVVKPNQSSVDFRTSCYLTGKVVAIGFVCSVCLCVLSIIPPGNKCPACDSEFDE 315
>gi|328352540|emb|CCA38939.1| RNA polymerase II transcription factor B subunit 4 [Komagataella
pastoris CBS 7435]
Length = 307
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 130/260 (50%), Gaps = 36/260 (13%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI-ATGYNS---- 66
SL+ V++DTNP W+ + + VL LNA L+LN N+V V+ ++ NS
Sbjct: 23 SLLAVVIDTNPLEWTKLKGVICLKELCKSVLVLLNAHLSLNSGNRVAVLTSSSLNSGPKF 82
Query: 67 -----CDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLG--KQEPEGRIACS 119
D Y+ + S + + + ++Q L+ ++ +E L QE +G IA
Sbjct: 83 LYPDPNDKTYEKRESLLSSDIHRQFKFVDQKIIQELQILLD-NEPLNPENQELKGSIA-- 139
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRG------------SPDGPEQYVAIMNAIFSAQR 167
G++SMAL YI R+ + P+ G S D +QYV MN IFSAQ+
Sbjct: 140 ---GAMSMALSYINRLTN---IEPESTGNTLRAKMLVISISDDSTQQYVPFMNCIFSAQK 193
Query: 168 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
V ID C +G +S+FLQQAS +T GV+ + + GL QYL T D R + LP
Sbjct: 194 MKVSIDVCKMGP-DSSFLQQASDVTNGVYMLIKNVHGLIQYLTTALFIDPSLRPIMVLPT 252
Query: 228 PVGVDFRASCFCHKNTIDMG 247
+DFRASCF ID+G
Sbjct: 253 NSDLDFRASCFVTNKVIDIG 272
>gi|68489766|ref|XP_711270.1| hypothetical protein CaO19.11671 [Candida albicans SC5314]
gi|68489813|ref|XP_711246.1| hypothetical protein CaO19.4194 [Candida albicans SC5314]
gi|46432534|gb|EAK92011.1| hypothetical protein CaO19.4194 [Candida albicans SC5314]
gi|46432559|gb|EAK92035.1| hypothetical protein CaO19.11671 [Candida albicans SC5314]
Length = 363
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 153/339 (45%), Gaps = 63/339 (18%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+DD SL+ ++LD + W + +S +L FLN L+LN NQV + +
Sbjct: 20 NDDPSLLTIILDLSMKGWYNIKEMISIQDITKSLLVFLNGHLSLNNSNQVAFLVSSTMGS 79
Query: 68 DYVY-DSSSTGNQSVG--NGRMPSLCAT-------LLQNLEEFMNKDEQLGKQEPEGRIA 117
++Y D + GN +V + P + + +LQ L E++ + + + +
Sbjct: 80 KFLYPDLTMVGNPNVSEHSEHFPDMYRSFKMVDQSVLQQLNEYIEEIIKFETRNEKKGFN 139
Query: 118 CSLLSGSLSMALCYIQRVF----------------------------------------- 136
C L+G++SMAL Y R+
Sbjct: 140 C--LTGAISMALTYTNRMLTLDQSITTTTAAAMTASTLESTSNNNNTSGTSGSSSTSSST 197
Query: 137 --RSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGG 194
+S +L + D +Y+ +MN IF+AQ+ V ID LG NS++LQQAS T G
Sbjct: 198 SMKSRVLIVS--ANDDDDLRYIPLMNCIFAAQKMKVSIDVAKLGHNNSSYLQQASDATKG 255
Query: 195 VHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCL 254
V+ + G+ Q L T F + + R ++ LP V++RASCF ++D+GY+CSVCL
Sbjct: 256 VYLHIEDPKGIIQVLSTAFFIEPNLRPYIILPTNSNVNYRASCFITGKSVDLGYVCSVCL 315
Query: 255 SIYCK--HLKKCSTCGSVFGQAQTQ--SDEPSATNRKRK 289
I + KC C S F + Q + EP ++K++
Sbjct: 316 CIMSQLPQSGKCPACDSEFDKKIIQDLNREPQVISKKKR 354
>gi|366988553|ref|XP_003674043.1| hypothetical protein NCAS_0A11040 [Naumovozyma castellii CBS 4309]
gi|342299906|emb|CCC67662.1| hypothetical protein NCAS_0A11040 [Naumovozyma castellii CBS 4309]
Length = 338
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 131/298 (43%), Gaps = 31/298 (10%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQ------FLTHVLAFLNAILTLNQLNQVVV 59
S + + SL+ V++D P W+ ++ L +L FLNA L N NQV V
Sbjct: 16 SSITEETPSLLTVIVDITPKLWAELDEEINEKGNLINVLKSLLVFLNAHLAFNSSNQVAV 75
Query: 60 IATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ-----EPEG 114
IA Y++ +S + V +G+ L F N DE L + E E
Sbjct: 76 IAAHSQGIKYLFPKNSISVKGVNSGK-KDLSIINKDMYRRFRNVDETLVDELYALFEEEL 134
Query: 115 R-----IACSLLSGSLSMALCYIQRV--------FRSGLLHPQPRG---SPDGPEQYVAI 158
+ S LSG++S L YI RV +S L+ G S D QY+ I
Sbjct: 135 KQVNTVTQKSTLSGAMSAGLTYINRVTKELEAISLKSRLMVLTCGGKGESKDEIFQYIPI 194
Query: 159 MNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDL 217
MN IFSA + PID +G ++ S FLQQ + T G + + GL QYL T D
Sbjct: 195 MNCIFSATKIKCPIDVVKIGGSKESTFLQQTTDATNGAYLHVESTKGLIQYLATAMFIDP 254
Query: 218 HSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 273
R + P VDFR SC+ + +G+ICSVCL + KC C S F +
Sbjct: 255 SLRQIIVKPNHGSVDFRTSCYLTGKVVAVGFICSVCLCVLSIIPPGNKCPACDSEFDE 312
>gi|365762534|gb|EHN04068.1| Tfb4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 338
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 137/303 (45%), Gaps = 31/303 (10%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGL----------LHPQPRGSPDGPE 153
+L K++ E S L+G++S L Y+ R+ + + L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 212
QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATA 251
Query: 213 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 270
D R + P VDFR SC+ + +G+ICSVCL + KC C S
Sbjct: 252 MFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAIGFICSVCLCVLSIIPPGNKCPACDSQ 311
Query: 271 FGQ 273
F +
Sbjct: 312 FDE 314
>gi|151942841|gb|EDN61187.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
gi|259150209|emb|CAY87012.1| Tfb4p [Saccharomyces cerevisiae EC1118]
gi|349581866|dbj|GAA27023.1| K7_Tfb4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 338
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 137/303 (45%), Gaps = 31/303 (10%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGL----------LHPQPRGSPDGPE 153
+L K++ E S L+G++S L Y+ R+ + + L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 212
QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATA 251
Query: 213 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 270
D R + P VDFR SC+ + +G+ICSVCL + KC C S
Sbjct: 252 MFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAIGFICSVCLCVLSIIPPGNKCPACDSQ 311
Query: 271 FGQ 273
F +
Sbjct: 312 FDE 314
>gi|6325313|ref|NP_015381.1| Tfb4p [Saccharomyces cerevisiae S288c]
gi|62901135|sp|Q12004.1|TFB4_YEAST RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=General transcription and DNA repair
factor IIH subunit TFB4; Short=TFIIH subunit TFB4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|805037|emb|CAA89174.1| unknown [Saccharomyces cerevisiae]
gi|1314125|emb|CAA95001.1| unknown [Saccharomyces cerevisiae]
gi|190407994|gb|EDV11259.1| RNA polymerase II transcription factor B subunit 4 [Saccharomyces
cerevisiae RM11-1a]
gi|256268932|gb|EEU04279.1| Tfb4p [Saccharomyces cerevisiae JAY291]
gi|285815586|tpg|DAA11478.1| TPA: Tfb4p [Saccharomyces cerevisiae S288c]
gi|323350201|gb|EGA84348.1| Tfb4p [Saccharomyces cerevisiae VL3]
gi|392296067|gb|EIW07170.1| Tfb4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 338
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 137/303 (45%), Gaps = 31/303 (10%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGL----------LHPQPRGSPDGPE 153
+L K++ E S L+G++S L Y+ R+ + + L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 212
QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATA 251
Query: 213 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 270
D R + P VDFR SC+ + +G+ICSVCL + KC C S
Sbjct: 252 MFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLSIIPPGNKCPACDSQ 311
Query: 271 FGQ 273
F +
Sbjct: 312 FDE 314
>gi|366998281|ref|XP_003683877.1| hypothetical protein TPHA_0A03670 [Tetrapisispora phaffii CBS 4417]
gi|357522172|emb|CCE61443.1| hypothetical protein TPHA_0A03670 [Tetrapisispora phaffii CBS 4417]
Length = 344
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 148/324 (45%), Gaps = 52/324 (16%)
Query: 8 LYSDDV-SLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
L SD+ SL+ V++DT+P W+ S + L +L FLNA L N N+V VI
Sbjct: 17 LNSDETPSLLTVIIDTSPRLWAELDGDMKEDGSIIKVLRSMLVFLNAHLATNNANKVAVI 76
Query: 61 ATGYNSCDYVYD--------------SSSTGNQSVGNGRM----PSLCATLLQNLEEFMN 102
A Y+Y S+S + ++ N M ++ +L++ + +
Sbjct: 77 AAHSQGIKYLYPINTSHANKNKTNEISTSKKDLAIINPNMYRQFRNVDESLVEEIYKIFQ 136
Query: 103 KDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV--------FRSGLL------HPQPRGS 148
K++ ++P+ + S L+G++S L YI R+ +S L+ +
Sbjct: 137 KEKAEYLEKPKQK---STLAGAMSAGLTYINRIVKNEENYTLKSRLVVITCGGNAYTDNK 193
Query: 149 PDGPEQYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQ 207
+ QY+ IMN IFSA + PID +G + S FLQQA+ T G++ + GL Q
Sbjct: 194 VEEVIQYIPIMNCIFSATKMKCPIDVVKIGGSSESTFLQQATDATSGIYLYVKDYHGLIQ 253
Query: 208 YLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIY--CKHLKKCS 265
YLLT + R+ + P +DFR SC+ + +G+ICS+CL + KC
Sbjct: 254 YLLTAMFIEPSLRSTIVKPNSKSIDFRTSCYITGKVVAVGFICSICLCVMSILPPNNKCP 313
Query: 266 TCGSVFGQAQTQSDEPSATNRKRK 289
C SVF DE KRK
Sbjct: 314 ACDSVF-------DEKVIVKLKRK 330
>gi|241956274|ref|XP_002420857.1| RNA polymerase II transcription factor B subunit 4, putative; TFIIH
subunit TFB4, putative [Candida dubliniensis CD36]
gi|223644200|emb|CAX41010.1| RNA polymerase II transcription factor B subunit 4, putative
[Candida dubliniensis CD36]
Length = 363
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 154/341 (45%), Gaps = 63/341 (18%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
DD SL+ ++LD + W + +S +L FLN L+LN NQV + +
Sbjct: 21 DDPSLLTIILDLSMKGWYNIKEMISIQDITKSLLVFLNGHLSLNNSNQVAFLVSSSMGSK 80
Query: 69 YVY-DSSSTGNQSVG--NGRMPSLCAT-------LLQNLEEFMNKDEQLGKQEPEGRIAC 118
++Y D ++ GN +V + P + + +L+ L E++ + + + + C
Sbjct: 81 FLYPDLTTIGNPNVNEHSEHFPGMYRSFKMADQSVLRQLNEYIKEIVKFETRNEKRGFNC 140
Query: 119 SLLSGSLSMALCYIQRVF------------------------------------------ 136
L+G++SMAL Y R+
Sbjct: 141 --LTGAISMALTYTNRMLTLDQSITTTTAAAMTTSTLESTSNNNSTSGTGGSSGTSSSTS 198
Query: 137 -RSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGV 195
+S +L + D +Y+ +MN IF+AQ+ V ID LG NS++LQQAS T GV
Sbjct: 199 MKSRILIVS--ANDDDDLRYIPLMNCIFAAQKMKVSIDVAKLGHNNSSYLQQASDATKGV 256
Query: 196 HHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLS 255
+ + G+ Q L T F + + R ++ LP V++RASCF ++D+GY+CSVCL
Sbjct: 257 YLHIEDPKGIIQVLSTAFFIEPNLRPYIILPTNSNVNYRASCFITGKSVDLGYVCSVCLC 316
Query: 256 IYCK--HLKKCSTCGSVFGQA--QTQSDEPSATNRKRKTTD 292
I + KC C S F + Q + EP ++K++ +
Sbjct: 317 IMSQLPQSGKCPACDSEFDKKIIQELNREPQVISKKKRKLE 357
>gi|315052780|ref|XP_003175764.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
gypseum CBS 118893]
gi|311341079|gb|EFR00282.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
gypseum CBS 118893]
Length = 413
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 78/122 (63%), Gaps = 3/122 (2%)
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 209
D +QY+ IMN+IF+ QR +PID C L A ++ FLQQA T G++ G QYL
Sbjct: 242 DSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATRGIYMSLDSPRGFLQYL 300
Query: 210 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK--KCSTC 267
+ F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+ + C TC
Sbjct: 301 MLAFLPDQRARRNLILPTRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPPEGANCLTC 360
Query: 268 GS 269
G+
Sbjct: 361 GT 362
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
+D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A+ +
Sbjct: 9 NDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVASHSHQAV 68
Query: 69 YVY 71
++Y
Sbjct: 69 WLY 71
>gi|323335143|gb|EGA76433.1| Tfb4p [Saccharomyces cerevisiae Vin13]
Length = 338
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 136/303 (44%), Gaps = 31/303 (10%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGL----------LHPQPRGSPDGPE 153
+L K++ E S L+G++S L Y+ R+ + + L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 212
QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATA 251
Query: 213 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 270
D R + P VDFR SC+ + G+ICSVCL + KC C S
Sbjct: 252 MFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAXGFICSVCLCVLSIIPPGNKCPACDSQ 311
Query: 271 FGQ 273
F +
Sbjct: 312 FDE 314
>gi|326473589|gb|EGD97598.1| transcription factor TFIIH subunit Tfb4 [Trichophyton tonsurans CBS
112818]
Length = 415
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 78/122 (63%), Gaps = 3/122 (2%)
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 209
D +QY+ IMN+IF+ QR +PID C L A ++ FLQQA T G++ G QYL
Sbjct: 244 DSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATRGIYMSLDSPRGFLQYL 302
Query: 210 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK--KCSTC 267
+ F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+ + C TC
Sbjct: 303 MLAFLPDQRARRNLILPTRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPPEGANCLTC 362
Query: 268 GS 269
G+
Sbjct: 363 GT 364
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S ++D SL+ V+LDTNP W+ +L S +T++L F+NA L N N+V V+A
Sbjct: 2 ADSGAAANDPSLLTVILDTNPHAWAQLQETLPLSSAVTNLLVFINAHLACNYANKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHNHQAVWLY 71
>gi|326480715|gb|EGE04725.1| TFIIH basal transcription factor complex p34 subunit [Trichophyton
equinum CBS 127.97]
Length = 415
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 78/122 (63%), Gaps = 3/122 (2%)
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 209
D +QY+ IMN+IF+ QR +PID C L A ++ FLQQA T G++ G QYL
Sbjct: 244 DSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATRGIYMSLDSPRGFLQYL 302
Query: 210 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK--KCSTC 267
+ F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+ + C TC
Sbjct: 303 MLAFLPDQRARRNLILPTRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPPEGANCLTC 362
Query: 268 GS 269
G+
Sbjct: 363 GT 364
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S ++D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A
Sbjct: 2 ADSGAAANDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHNHQAVWLY 71
>gi|323331310|gb|EGA72728.1| Tfb4p [Saccharomyces cerevisiae AWRI796]
Length = 409
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 141/319 (44%), Gaps = 38/319 (11%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 83 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 142
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 143 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 202
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGL----------LHPQPRGSPDGPE 153
+L K++ E S L+G++S L Y+ R+ + + L S D
Sbjct: 203 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 262
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 212
QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T
Sbjct: 263 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATA 322
Query: 213 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 270
D R + P VDFR SC+ + +G+ICSVCL + KC C S
Sbjct: 323 MFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLSIIPPGNKCPACDSQ 382
Query: 271 FGQAQTQSDEPSATNRKRK 289
F DE KRK
Sbjct: 383 F-------DEHVIAKLKRK 394
>gi|444724893|gb|ELW65479.1| Tectonic-2 [Tupaia chinensis]
Length = 805
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Query: 146 RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGL 205
+ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L
Sbjct: 11 KAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSL 69
Query: 206 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIY 257
QYLL +F D R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+
Sbjct: 70 LQYLLWVFLPDQDQRSQLTLPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIF 121
>gi|296815720|ref|XP_002848197.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
otae CBS 113480]
gi|238841222|gb|EEQ30884.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
otae CBS 113480]
Length = 413
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 77/122 (63%), Gaps = 3/122 (2%)
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 209
D +QY+ IMN+IF+ QR +PID C L A ++ FLQQA T G++ G QYL
Sbjct: 242 DSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATRGIYMSVDSPRGFLQYL 300
Query: 210 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK--KCSTC 267
+ F D R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+ + C TC
Sbjct: 301 MLAFLPDQRVRRNLVLPTRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPPEGANCLTC 360
Query: 268 GS 269
G+
Sbjct: 361 GT 362
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S S D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A
Sbjct: 2 AESTSASTDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYSNKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHSHQAVWLY 71
>gi|323346291|gb|EGA80581.1| Tfb4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 313
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 135/301 (44%), Gaps = 31/301 (10%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGL----------LHPQPRGSPDGPE 153
+L K++ E S L+G++S L Y+ R+ + + L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 212
QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATA 251
Query: 213 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 270
D R + P VDFR SC+ + G+ICSVCL + KC C S
Sbjct: 252 MFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAXGFICSVCLCVLSIIPPGNKCPACDSQ 311
Query: 271 F 271
F
Sbjct: 312 F 312
>gi|302656245|ref|XP_003019878.1| hypothetical protein TRV_06076 [Trichophyton verrucosum HKI 0517]
gi|291183651|gb|EFE39254.1| hypothetical protein TRV_06076 [Trichophyton verrucosum HKI 0517]
Length = 517
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 77/119 (64%), Gaps = 3/119 (2%)
Query: 153 EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 212
+QY+ IMN+IF+ QR +PID C L A ++ FLQQA T G++ G QYL+
Sbjct: 349 QQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATRGIYMSLDSPRGFLQYLMLA 407
Query: 213 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK--KCSTCGS 269
F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+ + C TCG+
Sbjct: 408 FLPDQRARRNLILPTRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPPEGANCLTCGT 466
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
+ L S D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A+
Sbjct: 107 TDLISPDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVASH 166
Query: 64 YNSCDYVY 71
+ ++Y
Sbjct: 167 SHQAVWLY 174
>gi|401838123|gb|EJT41898.1| TFB4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 338
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 129/291 (44%), Gaps = 31/291 (10%)
Query: 14 SLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V+++ P W++ S + L ++ FLNA L N N+V VIA
Sbjct: 24 SLLTVIVEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAHSQGI 83
Query: 68 DYVYDSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDE----------QLGKQEPEGR 115
Y+Y S+T ++ + + ++ + F N DE ++ K + E
Sbjct: 84 KYLYPESTTTTEASKSEKKSRSDLKIINSDMYRRFRNVDEALVEEIYKLFEVEKNQIEQN 143
Query: 116 IACSLLSGSLSMALCYIQRVFRSGL----------LHPQPRGSPDGPEQYVAIMNAIFSA 165
S L+G++S L Y+ R+ + + L S D QY+ IMN IFSA
Sbjct: 144 SQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSA 203
Query: 166 QRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 224
+ PID +G ++ S FLQQ + T GV+ GL QYL T D R +
Sbjct: 204 TKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVDSTQGLIQYLATAMFIDPSLRPIIV 263
Query: 225 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 273
P VDFR SC+ + +G+ICSVCL + KC C S F +
Sbjct: 264 KPNHGSVDFRTSCYLTGRVVAIGFICSVCLCVLSIIPPGNKCPACDSEFDE 314
>gi|171689210|ref|XP_001909545.1| hypothetical protein [Podospora anserina S mat+]
gi|170944567|emb|CAP70678.1| unnamed protein product [Podospora anserina S mat+]
Length = 396
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 148/341 (43%), Gaps = 79/341 (23%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
SKL D SL +++DTNP W++ L S+ + ++ F+NA L L+ NQ+ ++A
Sbjct: 16 SKL-EDVPSLTTIIIDTNPRAWAALGDVLPLSKAIANIQIFINAHLALSNTNQIAILAAH 74
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF-----------MNKDEQLGKQ-E 111
N ++Y + R T L +F + E +G
Sbjct: 75 TNRAVWLYPTPPKPPSEDVEMRDAGKTDTFLNTANKFPQYAQIEHALVTSLRELIGSTIP 134
Query: 112 PEGRIACSLLSGSLSMALCYIQRV-----------------------FRSGLLHPQPR-- 146
P+ + +SG+L++AL ++ + +GL+ R
Sbjct: 135 PDLNETTTQMSGALTLALAHMNKTALAYSASQALSNSTAGTTAPGTTASTGLVGFHGRIL 194
Query: 147 ---GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLD 203
S QY+ MNA+F+A S + ID+ L ++ FL+QAS+IT G +
Sbjct: 195 VISVSDSAASQYIPTMNAVFAASMSRIAIDTLALRG-SATFLEQASFITQGTFIQAADPQ 253
Query: 204 GLFQYLLTIFGTDLHS-----------------------RNFLQLPKPVG---------- 230
G+ QYL+ FG S R +L KPVG
Sbjct: 254 GILQYLMFGFGVGSASSGLSAAQNDGSGPLMGKSKTGKQREGDELRKPVGECLFTPAADS 313
Query: 231 VDFRASCFCHKNTIDMGYICSVCLSIYCKHL--KKCSTCGS 269
VDFRA+CFCH+N +D G++CS+CLSI+C+ +C TCG+
Sbjct: 314 VDFRAACFCHRNVVDTGFVCSICLSIFCEPPPGDECLTCGN 354
>gi|365757943|gb|EHM99813.1| Tfb4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 338
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 129/291 (44%), Gaps = 31/291 (10%)
Query: 14 SLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V+++ P W++ S + L ++ FLNA L N N+V VIA
Sbjct: 24 SLLTVIVEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAHSQGI 83
Query: 68 DYVYDSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDE----------QLGKQEPEGR 115
Y+Y S+T ++ + + ++ + F N DE ++ K + E
Sbjct: 84 KYLYPESTTTTEASKSEKKSRSDLKIINSDMYRRFRNVDEALVEEIYKLFEVEKNQIEQN 143
Query: 116 IACSLLSGSLSMALCYIQRVFRSGL----------LHPQPRGSPDGPEQYVAIMNAIFSA 165
S L+G++S L Y+ R+ + + L S D QY+ IMN IFSA
Sbjct: 144 SQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSA 203
Query: 166 QRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 224
+ PID +G ++ S FLQQ + T GV+ GL QYL T D R +
Sbjct: 204 TKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVDSTQGLIQYLATAMFIDPSLRPIIV 263
Query: 225 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 273
P VDFR SC+ + +G+ICSVCL + KC C S F +
Sbjct: 264 KPNHGSVDFRTSCYLTGRVVAIGFICSVCLCVLSIIPPGNKCPACDSEFDE 314
>gi|403216997|emb|CCK71492.1| hypothetical protein KNAG_0H00770 [Kazachstania naganishii CBS
8797]
Length = 342
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 134/297 (45%), Gaps = 41/297 (13%)
Query: 14 SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V++D P W + + + + L ++ FLNA L N NQV +IA+
Sbjct: 24 SLLTVVVDLTPKLWAEFDEETKEASNIIKMLRALIVFLNAHLAFNTSNQVAIIASHSQGI 83
Query: 68 DYVYDSSS----TGNQSVGN-----------GRMPSLCATLLQNLEEFMNKDEQLGKQEP 112
Y+Y SS T ++VG R ++ TL++ L +++G E
Sbjct: 84 KYLYPRSSNRSETEAETVGKKDQFIINPGMYSRFRNVDETLVEELYTLFK--QEMG--EV 139
Query: 113 EGRIACSLLSGSLSMALCYIQRV---FRSGLLHPQ--------PRGSPDGPE--QYVAIM 159
E S L G++ AL Y R+ + + L + G+ E QY+ IM
Sbjct: 140 EKATQKSTLPGAMLAALAYTNRLLHDYETKSLKSRIMVMTCGNKNGTSQKEEIFQYIPIM 199
Query: 160 NAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 218
N IFSA + PID +G A+ S FLQQ + T G++ DGL QYL T D
Sbjct: 200 NCIFSAAKLKCPIDVVKIGGARKSTFLQQTTDATNGIYLHVDSTDGLVQYLSTAMFIDPS 259
Query: 219 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 273
R+ + P VDFR SCF + +GYICSVCL + +C C S F +
Sbjct: 260 LRSIIVKPNQGSVDFRTSCFLTGKVVAVGYICSVCLCVLSVLPPGNRCPACESEFDE 316
>gi|327299656|ref|XP_003234521.1| transcription factor TFIIH subunit Tfb4 [Trichophyton rubrum CBS
118892]
gi|326463415|gb|EGD88868.1| transcription factor TFIIH subunit Tfb4 [Trichophyton rubrum CBS
118892]
Length = 413
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 77/119 (64%), Gaps = 3/119 (2%)
Query: 153 EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 212
+QY+ IMN+IF+ QR +PID C L A ++ FLQQA T G++ G QYL+
Sbjct: 245 QQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATRGIYMSLDSPRGFLQYLMLA 303
Query: 213 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK--KCSTCGS 269
F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+ + C TCG+
Sbjct: 304 FLPDQRARRNLILPTRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPPEGANCLTCGT 362
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S ++D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A
Sbjct: 2 ADSGAAANDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHSHQAVWLY 71
>gi|363751126|ref|XP_003645780.1| hypothetical protein Ecym_3480 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889414|gb|AET38963.1| Hypothetical protein Ecym_3480 [Eremothecium cymbalariae
DBVPG#7215]
Length = 341
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 141/320 (44%), Gaps = 48/320 (15%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWSSSSLSFSQ------FLTHVLAFLNAILTLNQLNQVVVI 60
+L D SL+ +++DTNP W+ Q L ++ FLNA L+ N NQV VI
Sbjct: 17 QLVEDTPSLLTLVIDTNPKLWADLDKEVGQEGQLLQALKSIIIFLNAHLSFNNSNQVSVI 76
Query: 61 ATGYNSCDYVY-------DSSSTG----NQSVGNGRM----PSLCATLLQNLEEFMNK-- 103
A Y+Y D S ++S+ N M ++ T+++ L + +
Sbjct: 77 AAYSRGIKYLYPPADELEDMSEKKTLHEDKSIINRDMYRGFRNVDETVVEELYKLFIQEI 136
Query: 104 -DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSG----------LLHPQPRGSPDGP 152
D++ K +P S LSG++S L YI R+ + ++ D
Sbjct: 137 NDQENSKIQP----IKSTLSGAMSAGLTYINRIVKENESTSLKSRLLVITCGSNAGKDEI 192
Query: 153 EQYVAIMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 211
QY+ IMN IFSA + ID +G + S FLQQA+ T G + + +GL QYL T
Sbjct: 193 FQYIPIMNCIFSATKMRCSIDVVKIGGTEESTFLQQATDATNGNYLHVENTEGLIQYLST 252
Query: 212 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGS 269
D R ++ P VDFR SC+ + +G++CSVCL + KC C +
Sbjct: 253 AMFIDPSLRQWIVKPNQSAVDFRTSCYLTGTVVAIGFVCSVCLCVLSIIPPENKCPACDA 312
Query: 270 VFGQAQTQSDEPSATNRKRK 289
F DE KRK
Sbjct: 313 EF-------DEKVVAKLKRK 325
>gi|326437202|gb|EGD82772.1| hypothetical protein PTSG_03422 [Salpingoeca sp. ATCC 50818]
Length = 311
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 144/322 (44%), Gaps = 65/322 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL V+++D +P W S S + + + FLNA L+++ N + VI ++Y
Sbjct: 3 SLFVLIVDLHPARWKQLSEDASLDEAMNQICVFLNAQLSVHVSNTIAVIGAAPKKSMFLY 62
Query: 72 -------------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
+++ N+ G R PS A L F+N+ +
Sbjct: 63 PSAVKMPSPDDRQELFSEMNATILANATKLFNEQSGE-RHPSDLAGALSKALCFINRTVR 121
Query: 107 LGKQEPEGRIACS-----LLSGSLSMALCYI-------------QRVFRSGLLHPQ---P 145
+P+ A S ++G + RV + P+
Sbjct: 122 GTSLQPQHTTASSSVTSRFIAGDKATPASSSSSSSSSAPKAAGRDRVSSGARVTPRIGVV 181
Query: 146 RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGG----VHHKPQQ 201
SPD +Y A MN IF+AQ++ VPID C +G + +A LQQA+++T G VHH Q
Sbjct: 182 SVSPDSSVEYFAAMNCIFAAQKNDVPIDVCAMG-EEAAILQQAAHLTNGTYVKVHHPSQL 240
Query: 202 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL 261
L L +T +D H L P ++F ASCFCH T+D+GY+C+VCLS+YC+ L
Sbjct: 241 LQSLMMGFVT--SSDAH---VLVRPVQRRINFDASCFCHGRTVDIGYVCTVCLSVYCERL 295
Query: 262 KKCSTCGSVFGQAQTQSDEPSA 283
C CG+ F SD+P A
Sbjct: 296 ASCRICGAEF------SDKPGA 311
>gi|294658697|ref|XP_461035.2| DEHA2F15510p [Debaryomyces hansenii CBS767]
gi|218511849|sp|Q6BL86.2|TFB4_DEBHA RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|202953319|emb|CAG89405.2| DEHA2F15510p [Debaryomyces hansenii CBS767]
Length = 387
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 150/348 (43%), Gaps = 73/348 (20%)
Query: 15 LVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY- 71
L+ V+LD P W + ++ + +L FLNA L+LN NQV IA+ ++Y
Sbjct: 24 LLTVVLDVTPQSWYKIRNQITIQEVAKSLLVFLNAHLSLNNSNQVAFIASTPQGSKFLYP 83
Query: 72 -------DSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDEQLGK----------QEP 112
+ SS N N ++L+ + +F DE + + Q
Sbjct: 84 NPEKNYDEVSSKKNGEGSNLNKADSTSSLVGDGMYRQFRIVDEAVLEKLNEIFADISQNV 143
Query: 113 EGRIACSLLSGSLSMALCYIQRVFR----------------------------------- 137
+ + S LSG+LS+AL Y R+
Sbjct: 144 DKSRSNSTLSGALSLALTYTNRMLNLDSSISTTTASAINTTTNANSNKTSSSGTTSNSMS 203
Query: 138 ------SGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQ 186
+ L + R + D +Y+ IMN F+AQ+ VPID LG ++S++LQ
Sbjct: 204 TGGTNTTSLTSMRSRILIVSSNDDNDIKYIPIMNTTFAAQKMKVPIDVAKLGERDSSYLQ 263
Query: 187 QASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDM 246
QAS T GV+ +GL Q L T F + R+ + LP V++RASCF ++++
Sbjct: 264 QASDATNGVYLHIANPEGLIQTLSTAFFIEPSIRSLIILPTNSNVNYRASCFITGKSVNL 323
Query: 247 GYICSVCLSIYCKHLK--KCSTCGSVFGQ---AQTQSDEPSATNRKRK 289
G++CSVCL I K KC TCGS F + AQ + +KRK
Sbjct: 324 GFVCSVCLCIMSIIPKEGKCPTCGSKFDEKILAQLRRGVVIPVKKKRK 371
>gi|302496747|ref|XP_003010374.1| hypothetical protein ARB_03075 [Arthroderma benhamiae CBS 112371]
gi|291173917|gb|EFE29734.1| hypothetical protein ARB_03075 [Arthroderma benhamiae CBS 112371]
Length = 414
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 77/119 (64%), Gaps = 3/119 (2%)
Query: 153 EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 212
+QY+ IMN+IF+ QR +PID C L A ++ FLQQA T G++ G QYL+
Sbjct: 246 QQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATRGIYMSLDSPRGFLQYLMLA 304
Query: 213 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK--KCSTCGS 269
F D +R L LP V VDFRA+CFCH+ +++G++CS+CLSI+C+ + C TCG+
Sbjct: 305 FLPDQRARRNLILPTRVDVDFRAACFCHRKVVNVGFVCSICLSIFCEPPEGANCLTCGT 363
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S ++D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A
Sbjct: 2 ADSGAAANDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHSHQAVWLY 71
>gi|302680643|ref|XP_003030003.1| hypothetical protein SCHCODRAFT_30664 [Schizophyllum commune H4-8]
gi|300103694|gb|EFI95100.1| hypothetical protein SCHCODRAFT_30664 [Schizophyllum commune H4-8]
Length = 257
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 125/264 (47%), Gaps = 39/264 (14%)
Query: 18 VLLDTNPFFW---SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS-CDYVYDS 73
V+LD N W S+ LS + L +L FL+A + N + V G + +DS
Sbjct: 3 VILDLNAHQWTQLSTEELSLANALPQLLVFLHAHIAAAAENTLAVYTAGSEGPTELAFDS 62
Query: 74 SST---------GNQSVGNGRMP-SLCATLLQNLEEFMNKDEQLGK-----QEPEGRIAC 118
S GN+ R+ SL + ++ + DE + + +P
Sbjct: 63 LSNDVELPGALDGNKYPPFRRLDVSLTDAIQAAMDRLADADEDMKRTVGTSSDPHA---- 118
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPID 173
+ + +L+ +LCYI R L P R SPD + YV MNAIFSAQ+ VPID
Sbjct: 119 TSFTSALTRSLCYINR-----LQSPSSRILLLSVSPDRAQDYVPFMNAIFSAQKLKVPID 173
Query: 174 SCYLGAQNSAFLQQASYITGGVHHK------PQQLDGLFQYLLTIFGTDLHSRNFLQLPK 227
+ L A +S FLQQA+Y+TGG + + + GL QYL+ F R + +P
Sbjct: 174 TLQLAAHDSVFLQQATYLTGGAYVRLGDESGEGKRGGLLQYLMMCFLPPPALRQVMAVPT 233
Query: 228 PVGVDFRASCFCHKNTIDMGYICS 251
V+ RA+CFCHK ++G++CS
Sbjct: 234 MDQVNLRAACFCHKRMTEIGFVCS 257
>gi|225684398|gb|EEH22682.1| RNA polymerase II transcription factor B subunit 4
[Paracoccidioides brasiliensis Pb03]
Length = 382
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 139/322 (43%), Gaps = 90/322 (27%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP+ W+ S+L S + ++L F+NA L N N+V V+A+ N ++Y
Sbjct: 19 SLLTVILDTNPYAWALLESTLPLSAAIANLLVFINAHLACNYANKVAVVASHCNHAAWLY 78
Query: 72 DSSSTGNQS-------------VGNGRMPSL---------CATLLQNLEEFMNKDEQLGK 109
+ ST + S NG+ PS + F+ +EQL +
Sbjct: 79 PTPSTPSISQSKAIQLDADGDITMNGQ-PSTEPEPENQQQSQSPFNKYRPFLLVEEQLTR 137
Query: 110 Q-------EPEGRIACS---LLSGSLSMALCYIQR-----VFRSGLLHPQPRGSPDGP-- 152
P + + +L+G+L++AL +I R G +P P S GP
Sbjct: 138 NLHCLLSATPPSAVTSTTSTMLAGALTLALSHINRESIAYAEAHGAANPDPTSSTTGPAT 197
Query: 153 ----------------------------------------------EQYVAIMNAIFSAQ 166
+ Y+ IMN+IF+ Q
Sbjct: 198 STASGLPPPPNSTTADPTSAAANPLNPTALQSRILIISLSNNTHSAQHYIPIMNSIFACQ 257
Query: 167 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ-QLDGLFQYLLTIFGTDLHSRNFLQL 225
R +PID L A ++AFLQQAS TGG++ G QYL+ F D +R L L
Sbjct: 258 RLHIPIDIIKL-AGDAAFLQQASDATGGIYIPINAHPAGFLQYLMLGFLPDQRARAHLIL 316
Query: 226 PKPVGVDFRASCFCHKNTIDMG 247
P V VDFRA+CFCH+ +D+G
Sbjct: 317 PSRVDVDFRAACFCHRKVVDVG 338
>gi|50547937|ref|XP_501438.1| YALI0C04367p [Yarrowia lipolytica]
gi|62901295|sp|Q6CD24.1|TFB4_YARLI RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|49647305|emb|CAG81737.1| YALI0C04367p [Yarrowia lipolytica CLIB122]
Length = 340
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 142/301 (47%), Gaps = 40/301 (13%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+ +++D + W S +S S+ + +L F+NA L L+ N V VI +
Sbjct: 21 DTPSLLSIIIDAHVPSWEEIKSQISISEAVASILVFINAHLALHNSNSVNVIGYNASGAR 80
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ------------------ 110
+Y S G +S + ++ + KD + +Q
Sbjct: 81 ILYPPKS-GVESTRSKEREERSESVSDGEQAPSKKDHSMYRQFKTVDEVVQTELWNMLNH 139
Query: 111 ---EPEGRIACSLLSGSLSMALCYIQR-VF------RSGLLHPQPRGSPDGPEQYVAIMN 160
E + S +SG+LS+AL +I + VF R+ +L G + QY+ MN
Sbjct: 140 TNYVEEEKQHNSAISGALSLALGFINKHVFVDESRMRARILL-LTVGHKNETIQYIPTMN 198
Query: 161 AIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLD-----GLFQYLLTIFG 214
IF+AQ+ +P+D C LG + FLQQA T G++ + + GL QYLL+ F
Sbjct: 199 CIFAAQKLKIPVDVCKLGPGSDQVFLQQACDSTHGIYMDISEKNSKTPKGLVQYLLSGFI 258
Query: 215 TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGSVFG 272
+D R + LP VDFRA+CF K +D+GY+CSVCL I + ++C TC + +
Sbjct: 259 SDPSLRPHIVLPTQSNVDFRAACFLTKQVVDIGYVCSVCLCIMSQIPSNRRCPTCDTTYS 318
Query: 273 Q 273
+
Sbjct: 319 E 319
>gi|388851454|emb|CCF54856.1| related to TFIIH basal transcription factor complex p34 subunit
[Ustilago hordei]
Length = 423
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 80/140 (57%), Gaps = 16/140 (11%)
Query: 148 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK------PQQ 201
+PD QY+ +MN IF+AQ+ + ID C L ++ FLQQASY+T G + + +
Sbjct: 259 TPDASTQYIPMMNCIFAAQKKGITIDVCKLFGSDTVFLQQASYLTSGTYFRLSDDSDALK 318
Query: 202 LDG----------LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICS 251
++G L Q LLT + R + LP +DFRA+CFCH+ +D+GYICS
Sbjct: 319 VNGKEGITDMRSSLVQTLLTTYLPSRSMRGVMNLPTLEEIDFRAACFCHRKIVDIGYICS 378
Query: 252 VCLSIYCKHLKKCSTCGSVF 271
VCLS++C+ C TC S F
Sbjct: 379 VCLSLFCQPRPFCLTCRSKF 398
>gi|239611920|gb|EEQ88907.1| transcription factor TFIIH subunit Tfb4 [Ajellomyces dermatitidis
ER-3]
Length = 425
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 80/130 (61%), Gaps = 8/130 (6%)
Query: 153 EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK-PQQLDGLFQYLLT 211
+ Y+ IMN+IF+ QR +PID L A ++AFLQQAS T G++ G QYL+
Sbjct: 256 QHYIPIMNSIFACQRLHIPIDILKL-AGDAAFLQQASDATRGIYIPVTSHPAGFLQYLML 314
Query: 212 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL------KKCS 265
F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C
Sbjct: 315 GFLPDQRARAHLVLPSRVDVDFRAACFCHRRVVDVGFVCSICLSIFCEPLGGVDGVAECL 374
Query: 266 TCGSVFGQAQ 275
TCGS G +
Sbjct: 375 TCGSQLGVGE 384
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SL FS + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 21 SLLTVILDTNPHAWARLEPSLPFSAAIANLLVFINAHLACNYANKVAVVASHCHHATWLY 80
>gi|327352824|gb|EGE81681.1| transcription factor TFIIH subunit Tfb4 [Ajellomyces dermatitidis
ATCC 18188]
Length = 426
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 80/130 (61%), Gaps = 8/130 (6%)
Query: 153 EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK-PQQLDGLFQYLLT 211
+ Y+ IMN+IF+ QR +PID L A ++AFLQQAS T G++ G QYL+
Sbjct: 257 QHYIPIMNSIFACQRLHIPIDILKL-AGDAAFLQQASDATRGIYIPVTSHPAGFLQYLML 315
Query: 212 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL------KKCS 265
F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C
Sbjct: 316 GFLPDQRARAHLVLPSRVDVDFRAACFCHRRVVDVGFVCSICLSIFCEPLGGVDGVAECL 375
Query: 266 TCGSVFGQAQ 275
TCGS G +
Sbjct: 376 TCGSQLGVGE 385
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SL FS + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 21 SLLTVILDTNPHAWARLEPSLPFSAAIANLLVFINAHLACNYANKVAVVASHCHHATWLY 80
>gi|261201796|ref|XP_002628112.1| transcription factor TFIIH subunit Tfb4 [Ajellomyces dermatitidis
SLH14081]
gi|239590209|gb|EEQ72790.1| transcription factor TFIIH subunit Tfb4 [Ajellomyces dermatitidis
SLH14081]
Length = 425
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 80/130 (61%), Gaps = 8/130 (6%)
Query: 153 EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK-PQQLDGLFQYLLT 211
+ Y+ IMN+IF+ QR +PID L A ++AFLQQAS T G++ G QYL+
Sbjct: 256 QHYIPIMNSIFACQRLHIPIDILKL-AGDAAFLQQASDATRGIYIPVTSHPAGFLQYLML 314
Query: 212 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL------KKCS 265
F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C
Sbjct: 315 GFLPDQRARAHLVLPSRVDVDFRAACFCHRRVVDVGFVCSICLSIFCEPLGGVDGVAECL 374
Query: 266 TCGSVFGQAQ 275
TCGS G +
Sbjct: 375 TCGSQLGVGE 384
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SL FS + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 21 SLLTVILDTNPHAWARLEPSLPFSAAIANLLVFINAHLACNYANKVAVVASHCHHATWLY 80
>gi|50303925|ref|XP_451910.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|62901298|sp|Q6CVX9.1|TFB4_KLULA RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|49641042|emb|CAH02303.1| KLLA0B08569p [Kluyveromyces lactis]
Length = 337
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 134/300 (44%), Gaps = 49/300 (16%)
Query: 11 DDVSLVVVLLDTNPFFW--------------SSSSLSFSQFLTHVLAFLNAILTLNQLNQ 56
D SL+ V++DT+ W SS + L ++ FLNA L N NQ
Sbjct: 21 DTPSLLTVVVDTSIHSWVQLTKQQSGSGSEGSSGEKQLIEALKSIVVFLNAHLAFNSGNQ 80
Query: 57 VVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE-------QLGK 109
V +IA Y+Y S+ + PS+ F N DE +L K
Sbjct: 81 VCLIAAHSEGMKYLYPSADSK---------PSMSMVSSDMYRGFRNVDEIVVEQWYRLFK 131
Query: 110 QEPEGRIAC----SLLSGSLSMALCYIQRVF--------RSGLLHPQPRGSPDGPE---Q 154
+E EG+ + S LSG++S AL Y+ R+ RS LL G+ G + Q
Sbjct: 132 EELEGQESKVSMKSSLSGAMSSALTYVNRILKENENTSLRSRLLVITC-GTSQGKDEIFQ 190
Query: 155 YVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 213
Y+ IMN IFSA + ID +G S FLQQA+ T GV+ + GL QYL T
Sbjct: 191 YIPIMNCIFSATKMKCSIDVVKIGGGIESTFLQQATDATSGVYLHVENTRGLIQYLSTAM 250
Query: 214 GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVF 271
D RN + P VDFR SCF + +G++CSVCL + +KC C S F
Sbjct: 251 FIDPSLRNVIIKPNQGSVDFRTSCFLTGKVVAVGFVCSVCLCVLSVIPPGQKCPACDSPF 310
>gi|71004806|ref|XP_757069.1| hypothetical protein UM00922.1 [Ustilago maydis 521]
gi|46096873|gb|EAK82106.1| hypothetical protein UM00922.1 [Ustilago maydis 521]
Length = 422
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK----------- 198
D QY+ +MN IF+AQ+ + ID C L +++ FLQQASY+T G + +
Sbjct: 262 DASTQYIPMMNCIFAAQKKGITIDVCKLFGKDTVFLQQASYLTSGTYFRLADDEDQSKSD 321
Query: 199 ----PQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCL 254
L Q LLT + R + LP +DFRA+CFCH+ +D+GYICSVCL
Sbjct: 322 TASATDMRSSLVQTLLTTYLPSRSMRGVMNLPSLEKIDFRAACFCHRKIVDIGYICSVCL 381
Query: 255 SIYCKHLKKCSTCGSVFGQAQTQSDE 280
S++C C TC S F + Q E
Sbjct: 382 SLFCSPKPSCLTCRSKFPKETLQRYE 407
>gi|150865476|ref|XP_001384710.2| hypothetical protein PICST_83789 [Scheffersomyces stipitis CBS
6054]
gi|149386732|gb|ABN66681.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 376
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 153/357 (42%), Gaps = 79/357 (22%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+DD SL+ V+LD +P W S + +L F+NA L+LN NQV IA+
Sbjct: 19 NDDPSLLTVILDVSPAGWYRIRDQTSIDELAKSLLVFMNAHLSLNNSNQVAFIASTPQKS 78
Query: 68 DYV-------YDSSSTGNQSVG-----NGRMPSLCATLLQNLEEFMNKDEQL-------- 107
++ YD T + S G + + P+L + + +F DE +
Sbjct: 79 KFLFPNPEIDYDEIRTSSSSSGSASNQHQKTPTLVSKDM--YRQFRVVDEAVLEELNVVF 136
Query: 108 -----GKQEPEGRIACSLLSGSLSMALCYIQRVFR----------SGLLHPQPRGSPDGP 152
G Q+ S LSG+LSMAL Y R+ S + G+ G
Sbjct: 137 DEIANGIQDINNN---STLSGALSMALTYTNRMLTLDQSISTTTASAINSTTSMGAGSGS 193
Query: 153 E---------------------------------QYVAIMNAIFSAQRSMVPIDSCYLGA 179
+Y+ +MN+IF+AQ+ ID LG
Sbjct: 194 GNTATNSSTSNPSNSITSMKSRILIVTANDEDDVKYIPVMNSIFAAQKMRTSIDIAKLGF 253
Query: 180 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 239
++S++LQQA+ T G++ G+ Q L + F + R F+ LP V++RASCF
Sbjct: 254 EDSSYLQQAADATNGIYFHVHDPRGIVQTLTSAFFIEPSIRPFIILPTNSNVNYRASCFV 313
Query: 240 HKNTIDMGYICSVCLSIYCK--HLKKCSTCGSVFGQAQTQ--SDEPSATNRKRKTTD 292
++D+G++CSVCL I K KC C SVF + S PS ++K++ D
Sbjct: 314 TGKSVDIGFVCSVCLCIMSKIPPSGKCPACESVFDEKIIAQLSKGPSVLSKKKRKID 370
>gi|341038752|gb|EGS23744.1| putative transcription factor [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 429
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 154/368 (41%), Gaps = 114/368 (30%)
Query: 10 SDDV-SLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ + L S+ + ++L F+NA L + NQV +IA+ N
Sbjct: 18 TDDIPSLRTIIIDTNPRAWAALADVLPLSKAIANILIFVNAHLAFSNSNQVAIIASHTNR 77
Query: 67 CDYVY---------DSSS---TGNQSVGNGRMPSLC---ATLLQNLEEFMNKDEQLGKQE 111
++Y SSS +S G+ P +LL ++ M+
Sbjct: 78 AVWLYPQPPEPLPSGSSSHDAAARKSATIGKYPQFAQIEKSLLSSIRALMDD-----TTP 132
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRS--------------------------------- 138
+ + +SG+L++AL +I + S
Sbjct: 133 SDLDTTTTQISGALTLALAHINKTALSLTASNTAAAAVATGHSLTAGSAASVAAKAASTS 192
Query: 139 ---GLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASY 190
GL R S QY+ MNA+F+A + + ID+ L ++ FL+QAS+
Sbjct: 193 TSAGLAGLHARILIISVSDSSAAQYIPTMNAVFAAAHARIAIDTLALRG-SATFLEQASF 251
Query: 191 ITGGVHHKPQQLDGLFQYLLTIFGTD-----------LHSRNFLQLPKPVG--------- 230
IT G + + GL QYL+ FG+ ++ + PKP G
Sbjct: 252 ITRGTFIRAAEPRGLLQYLMFGFGSGSAPSNPAAAAAAAEKSTIGGPKPSGAAAAQPAAG 311
Query: 231 ---------------------------VDFRASCFCHKNTIDMGYICSVCLSIYCKHLK- 262
VDFRA+CFCH+N +D G++CSVCLSI+C+
Sbjct: 312 TTKPGAAGKLPPGAAVTDLLMTPSAEAVDFRAACFCHRNVVDTGFVCSVCLSIFCEVPPG 371
Query: 263 -KCSTCGS 269
+C TCG+
Sbjct: 372 GECMTCGT 379
>gi|255727412|ref|XP_002548632.1| hypothetical protein CTRG_02929 [Candida tropicalis MYA-3404]
gi|240134556|gb|EER34111.1| hypothetical protein CTRG_02929 [Candida tropicalis MYA-3404]
Length = 369
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 155/342 (45%), Gaps = 61/342 (17%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+DD SL+ ++LD + W + +S +L FLN L+LN NQV I +
Sbjct: 20 NDDPSLLTIILDLSLKGWFNIKDLISIQDITKSLLVFLNGHLSLNNSNQVAFIVSSSKGS 79
Query: 68 DYVY-DSSSTGNQSVGN--GRMPSLCA-------TLLQNLEEFMNK---DEQLGKQEPEG 114
++Y D ++ GN + + G+ P + ++L L +F+ + + ++
Sbjct: 80 KFLYPDLTTNGNNTTEDFGGQFPGMYRQFKMVDQSVLHQLNKFIEEVMATPEEEEENGRR 139
Query: 115 RIACSLLSGSLSMALCYIQRVF-------------------------------------- 136
R + L+G+LSMAL Y R+
Sbjct: 140 RRTTNTLTGALSMALTYTNRMLTLDQTITTTTASAMTTSTLESTSNNNTSSSGSASVSTT 199
Query: 137 --RSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGG 194
+S +L + D +Y+ +MN IF+AQ+ V ID LG +NS++LQQAS T G
Sbjct: 200 GIKSRVLIVS--ANDDDDIKYIPLMNCIFAAQKMKVSIDVAKLGHKNSSYLQQASDATRG 257
Query: 195 VHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCL 254
V+ + G+ Q L T F + + R ++ LP V++RASCF ++D+GY+CSVCL
Sbjct: 258 VYLHIEDPKGIIQVLSTAFFIEPNLRPYIILPTNSNVNYRASCFLTGKSVDLGYVCSVCL 317
Query: 255 SIYCK--HLKKCSTCGSVFGQAQTQS--DEPSATNRKRKTTD 292
I K KC C S F + EP ++K++ D
Sbjct: 318 CIMSKLPDNGKCPACDSAFDKKIINELIREPQVISKKKRKLD 359
>gi|410082137|ref|XP_003958647.1| hypothetical protein KAFR_0H01020 [Kazachstania africana CBS 2517]
gi|372465236|emb|CCF59512.1| hypothetical protein KAFR_0H01020 [Kazachstania africana CBS 2517]
Length = 328
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 135/318 (42%), Gaps = 44/318 (13%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVV 59
S + + SL+ V++D P W+ + S L +L FLNA L N NQV V
Sbjct: 16 STVLEETPSLLAVIIDIAPKLWAEFDEEKDTEGSIINVLQALLVFLNAHLAFNTSNQVAV 75
Query: 60 IATGYNSCDYVYDSSSTGNQSVGNG-------------RMPSLCATLLQNLEEFMNKDEQ 106
IA Y+Y ++ V R ++ L++ L K+EQ
Sbjct: 76 IAAHSQGIKYLYPENNINKNDVLKSDKDLSIINKGMYRRFRNVDEVLVEELYSLF-KEEQ 134
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRS-GLLHPQPR--------GSPDGPE--QY 155
E + S L G++S L Y+ R+ + L + R G + E QY
Sbjct: 135 ---NELDKITQKSTLPGAISAGLTYVNRISKEMETLSLKSRLMVLTCGSGMANKEEIFQY 191
Query: 156 VAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFG 214
+ IMN IFSA + P+D +G ++ S FLQQ + T GV+ + GL QYL T
Sbjct: 192 IPIMNCIFSATKLKCPVDVVKIGGSKESTFLQQTTDATHGVYLHVETTKGLIQYLTTAMF 251
Query: 215 TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFG 272
D R + P VDFR SC+ + +G+ICSVCL + KC C S F
Sbjct: 252 IDPSLRQIIVKPNQGSVDFRTSCYLTGKVVAVGFICSVCLCVLSIIPPGNKCPACDSEF- 310
Query: 273 QAQTQSDEPSATNRKRKT 290
DE K+KT
Sbjct: 311 ------DERVINKLKKKT 322
>gi|367035398|ref|XP_003666981.1| hypothetical protein MYCTH_2312237 [Myceliophthora thermophila ATCC
42464]
gi|347014254|gb|AEO61736.1| hypothetical protein MYCTH_2312237 [Myceliophthora thermophila ATCC
42464]
Length = 433
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 152/374 (40%), Gaps = 120/374 (32%)
Query: 10 SDDV-SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ L S+ + ++L F+N L + NQV +IA N
Sbjct: 18 TDDIPSLCTIIIDTNPRAWAALNEVLPVSKAIANILVFVNTHLAFSNSNQVALIAAHSNR 77
Query: 67 CDYVY---------------DSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNK--DEQ 106
++Y D+SS +++ + P +LL +L ++ D
Sbjct: 78 AVWLYPTPPKQAAPRDVDMQDASSNASKASSANKYPQFAQIEKSLLTSLRALIDDTTDAD 137
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRS-----------------------GLLHP 143
L P+ +SG+L++AL +I + S + P
Sbjct: 138 LSTTTPQ-------ISGALTLALAHINKTALSFSASATAAAAHAAATTGTAVTAGATVGP 190
Query: 144 QPRGSPD---------------------GPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 182
P S P QY+ MNA+F+A + V ID+ L ++
Sbjct: 191 APVASTSTSSGGLAGLHARILIISVSDSAPAQYIPTMNAVFAAAHARVAIDTLALRG-SA 249
Query: 183 AFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD-------------------------- 216
FL+QAS+IT G + + GL QYL+ FG+
Sbjct: 250 TFLEQASFITRGTFVRAAEPRGLLQYLMFGFGSGSAPSHPSGGADPGKGPAAPKTTAASV 309
Query: 217 -----------------LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK 259
+ L P VDFRA+CFCH+N ID GY+CSVCLSI+C+
Sbjct: 310 PGGGPGGRRKTGRLGLGASVADLLLTPSADAVDFRAACFCHRNVIDTGYVCSVCLSIFCE 369
Query: 260 --HLKKCSTCGSVF 271
+C TCG+V
Sbjct: 370 VPPGGECLTCGTVL 383
>gi|195111388|ref|XP_002000261.1| GI10128 [Drosophila mojavensis]
gi|193916855|gb|EDW15722.1| GI10128 [Drosophila mojavensis]
Length = 334
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 137/301 (45%), Gaps = 17/301 (5%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
S L ++ ++VV D N + F++ + + F NA L + N +V+ +
Sbjct: 21 SGLPEKNMLIIVVDYDANQSYVKRDLELFTKVVCSLTMFGNAYLLQSSENDLVIWSCSSY 80
Query: 66 SCDYVYDSSSTGNQSVGNGRMPSLCAT---LLQNLEEFMNKDEQLGK---QEPEGRIACS 119
+ + +Y + ++ L L +++D + K +E E + +
Sbjct: 81 AVNVIYPEKLIDPTKDSDSQLEELAVVESLTRMRLFNLISQDITVMKRQAKEEEEQTVTA 140
Query: 120 LLSGSLSMALCYIQRVFR--SGLLHPQPR-----GSPDGPEQYVAI-MNAIFSAQRSMVP 171
LL G+++M L Y+ R R + + H + R GS + P + MNA A R V
Sbjct: 141 LLPGTVAMVLSYLSRCRREVAKVAHIRGRILIVSGSKEPPIPLATMQMNAFQVAARMGVV 200
Query: 172 IDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGV 231
ID C L ++S L+ A+ ITGG + D L LL +F H R L P
Sbjct: 201 IDVCALELESSYMLRHAADITGGFYFSTSNFDTLSGVLLGLFLASPHVRQHLNYPVQPQA 260
Query: 232 DFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFG---QAQTQSDEPSATNRKR 288
D RA CFCH ++MG++CS CL+++CK+ C C ++F + Q D +A R+R
Sbjct: 261 DLRAMCFCHSKLVEMGFVCSSCLTVFCKYTPICGKCETIFKPPQKLQMYIDNRAAQRRQR 320
Query: 289 K 289
+
Sbjct: 321 E 321
>gi|443895518|dbj|GAC72864.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB4 [Pseudozyma antarctica
T-34]
Length = 425
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 77/137 (56%), Gaps = 15/137 (10%)
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVH------------H 197
D QY+ +MN IF+AQ+ + ID C L ++ FLQQASY+T G +
Sbjct: 264 DASTQYIPMMNCIFAAQKKGITIDVCKLLGNDTVFLQQASYLTSGTYFRLSDEQAGPSGQ 323
Query: 198 KPQQLD---GLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCL 254
+ +D L Q LLT + R+ + LP +DFRA+CFCH+ +D+GYICSVCL
Sbjct: 324 EASAIDLRSALVQTLLTTYLPSRSMRSSMNLPTLEEIDFRAACFCHRKIVDVGYICSVCL 383
Query: 255 SIYCKHLKKCSTCGSVF 271
S++C+ C TC S F
Sbjct: 384 SLFCQPRPFCLTCRSKF 400
>gi|343426778|emb|CBQ70306.1| related to TFIIH basal transcription factor complex p34 subunit
[Sporisorium reilianum SRZ2]
Length = 422
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 77/137 (56%), Gaps = 15/137 (10%)
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK----PQQLDG- 204
D QY+ +MN IF+AQ+ + ID C L ++ FLQQASY+T G + + +Q +G
Sbjct: 262 DASTQYIPMMNCIFAAQKRGITIDVCKLFGSDTVFLQQASYLTSGTYFRLADDHEQSNGD 321
Query: 205 ----------LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCL 254
L Q LLT + R + LP +DFR +CFCH+ +D+GYICSVCL
Sbjct: 322 KAGAIDMRSSLVQTLLTTYLPSRSMRGVMNLPTLEEIDFRTACFCHRRIVDVGYICSVCL 381
Query: 255 SIYCKHLKKCSTCGSVF 271
S++C+ C TC S F
Sbjct: 382 SLFCQPRPFCLTCRSKF 398
>gi|385301449|gb|EIF45638.1| subunit of TFIIH complex [Dekkera bruxellensis AWRI1499]
Length = 219
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 94/185 (50%), Gaps = 20/185 (10%)
Query: 94 LQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRG------ 147
LQNL+ + K E K LSG+LS AL YI R F++ H +
Sbjct: 3 LQNLKSLVGKGETHIK---------GTLSGALSQALSYINR-FQNSDEHSGMKARIVCIS 52
Query: 148 -SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 206
S D YV+IMN+IF+AQ+ V +D C LG NS FLQQAS T GV+ GL
Sbjct: 53 VSGDNTLPYVSIMNSIFAAQKQKVSVDVCKLGP-NSTFLQQASDSTNGVYIYIXHPLGLI 111
Query: 207 QYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKC 264
QYL T D R + LP +DFRASCF +D+GY+CSVCL I + C
Sbjct: 112 QYLSTALFIDPMLRPMVVLPTNTNIDFRASCFITNKVVDIGYVCSVCLCILSVIPEDEIC 171
Query: 265 STCGS 269
TC S
Sbjct: 172 PTCHS 176
>gi|260939906|ref|XP_002614253.1| hypothetical protein CLUG_05739 [Clavispora lusitaniae ATCC 42720]
gi|238852147|gb|EEQ41611.1| hypothetical protein CLUG_05739 [Clavispora lusitaniae ATCC 42720]
Length = 332
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 141/317 (44%), Gaps = 42/317 (13%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+D+ SL+ V+L+ P ++ S + ++ FLNA L+LN NQV + + + +
Sbjct: 18 ADNPSLLTVILELTPKSIAALDASLQDIVKALVVFLNAHLSLNNSNQVAFLVSSHVGARF 77
Query: 70 VYDSSS---TGNQSVGNGRMPSLCATLLQNLEEFMNKD-EQLGKQEPEGRIACSLLSGSL 125
++ S T + V G M + + + +NK+ E+L A S L+G+L
Sbjct: 78 LHPGVSDVETETRFVNPG-MYRQFRLVDEAVFGALNKELERLASAAKND--ARSTLAGAL 134
Query: 126 SMALCYIQRVFRSGLLHPQPRGSP----------------------------DGPEQYVA 157
SMA+ Y R +LH GS Y+
Sbjct: 135 SMAMTYTNR-----MLHVDQSGSAVQVAAAGTAGAQTTAAMGARVLVVSANESDDNNYMG 189
Query: 158 IMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDL 217
IMNAIF+AQ+ V ID LG +++ +L+QA+ T GV+ G+ Q L T F +
Sbjct: 190 IMNAIFAAQKMKVAIDVAKLGRRSAPYLEQAADATQGVYLHVADPRGMVQTLATAFFVEP 249
Query: 218 HSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--KHLKKCSTCGSVFGQAQ 275
R+ + LP VD++ASCF +D+GY+CSVCL I C C S F +
Sbjct: 250 SLRSVVILPTHGNVDYKASCFLTGRAVDVGYVCSVCLCIMSMLPDSGACPMCHSQFDEHH 309
Query: 276 TQSDEPSATNRKRKTTD 292
+ RKR+ +
Sbjct: 310 IARLRRGPSVRKRRKME 326
>gi|453081361|gb|EMF09410.1| transcription factor Tfb4 [Mycosphaerella populorum SO2202]
Length = 287
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 148 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHH--KPQQLDGL 205
S D QY+ IMN+IF+ QR +PID L A ++ FLQQA+ TGG++ G
Sbjct: 121 SGDLANQYIPIMNSIFACQRLSIPIDILKL-AGDTVFLQQAADATGGIYMALDSNTRGGF 179
Query: 206 FQYLLTIFGTDLHSRNFLQLP-KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLK 262
QYL+ + D +R L P + GVDFRA+CFCH+ +D+G++CS+CLSI+C+ H
Sbjct: 180 LQYLMFAYLPDETARKHLITPGEGEGVDFRAACFCHRRVVDIGFVCSICLSIFCEPLHDS 239
Query: 263 KCSTCGS 269
C TCGS
Sbjct: 240 LCLTCGS 246
>gi|159490694|ref|XP_001703308.1| TFIIH 34kDa subunit [Chlamydomonas reinhardtii]
gi|158280232|gb|EDP05990.1| TFIIH 34kDa subunit [Chlamydomonas reinhardtii]
Length = 169
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 71/102 (69%)
Query: 165 AQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 224
AQR+ V +D+ + Q+S+F+QQA+++TGG++ +P + GL LL F D +R L
Sbjct: 39 AQRAQVVLDAVVVAPQDSSFMQQAAHLTGGLYFRPHRGRGLLGVLLNHFVCDTATRKQLD 98
Query: 225 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCST 266
+ +GVDFRASCFCHK I+ GY+CSVCLSI+C+ + C+T
Sbjct: 99 EAQALGVDFRASCFCHKYVIETGYVCSVCLSIFCQPSRSCTT 140
>gi|313239039|emb|CBY14022.1| unnamed protein product [Oikopleura dioica]
Length = 291
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 136/298 (45%), Gaps = 38/298 (12%)
Query: 14 SLVVVLLDTNPFFW----------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
SL+ V+LD NP W +S S SF + L L F+++ L + N+VVV+
Sbjct: 9 SLIAVVLDLNPLAWGFRAAQDAQRTSKSESFVKALDATLTFISSYLLMTHGNKVVVVGAH 68
Query: 64 -------YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+ S Y +++S N+ + R+ LC +L L+E + + P R
Sbjct: 69 PLGAEILHPSDTYSGNTASMVNRQI-EARVNELCRGVL--LDETIAD----SRTSPASR- 120
Query: 117 ACSLLSGSLSMALCYIQRVFRSGLLHPQPRGSPDGPE----QYVAIMNAIFSAQRSMVPI 172
+ +LS ALC I R+ L + G + QY+ ++N ++A+ V I
Sbjct: 121 ----FNNALSKALCCINRMRSEKDLPARLMVMKCGGDFLSHQYLPLINCAYAAEHLKVSI 176
Query: 173 DSCYLGAQNSA-FLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGV 231
D+ L A+ LQQ S +TGGV+ + + L Q LLT D +R L V
Sbjct: 177 DTVVLEAETDVPVLQQMSDVTGGVYSRISEPAILLQTLLTYHLPDDDARKMLSKVPATPV 236
Query: 232 DFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 289
D RA CF + D+GY+CSVCLS+Y C TC SV P + RKR+
Sbjct: 237 DSRAVCFKTRAVTDIGYVCSVCLSVYKMLTPICVTCKSVLKLPGM----PPSRKRKRE 290
>gi|443923251|gb|ELU42522.1| Tfb4 domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 872
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 127/293 (43%), Gaps = 54/293 (18%)
Query: 16 VVVLLDTNPFFWSSSS---------LSFSQFLTHVLAFLNAILTLNQLNQVVVIAT--GY 64
++++LD +P W S+ + S FL+ VL F+N L Q N ++ G
Sbjct: 573 LILILDISPVQWQLSASSTANGGQGMDLSTFLSQVLVFVNCHLGCRQENSAAILGAFPGR 632
Query: 65 NSCDYVYDSSSTGNQSVG----------------------NGRMPSLCATLLQNL-EEFM 101
+ Y +S+ N +G + S+ + QNL + +
Sbjct: 633 SLTLYPAPASTQSNTGLGPESESNTYHGFRSVDDVLMERIQSELASMSESDTQNLIQAYR 692
Query: 102 NKDEQLGKQEPEGRIACSLLSGSLSMA---LCYIQRVFRSGLLHPQPRGSPDGPEQYVAI 158
N+ + R S++S + + + R F + ++P
Sbjct: 693 NQQNIRAPTKTRKRKGGSIVSLHYRLPHPDIVCVARCFDT--IYP--------------- 735
Query: 159 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 218
++ + +VPID C + ++ FLQQASY+T G + L Q L F
Sbjct: 736 IHELHLLGAKIVPIDVCRVFGPDTIFLQQASYLTRGCYLNLDSGSSLLQSLTMCFLPSAS 795
Query: 219 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
RN ++LP VDFRASCFCHK +DMGY+CSVCLSI+CK + C+TC F
Sbjct: 796 LRNTIELPSQGKVDFRASCFCHKEVVDMGYVCSVCLSIFCKPVVVCATCKIKF 848
>gi|344229675|gb|EGV61560.1| transcription factor Tfb4 [Candida tenuis ATCC 10573]
Length = 381
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 146/338 (43%), Gaps = 72/338 (21%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
S + +DD SL+ ++L+ +P W + S + +L FLN L+LN NQV + +
Sbjct: 15 SDVSNDDPSLLTIVLEVSPEGWFNIKDQTSIMDVVKSLLVFLNGHLSLNNSNQVAFVLSS 74
Query: 64 YNSCDYVYDSSS----------TGNQSVGNGRMPSLCATLLQNL-EEFMNKDE------- 105
++Y +S T ++V N + + + + +F DE
Sbjct: 75 PAGSKFLYPDTSKTYEEIPLNVTSEETVENSNKSEELSFVTKGMYRQFRVVDETVLSGLS 134
Query: 106 ----QLGKQEPEGRIACSLLSGSLSMALCYIQRVFR------------------------ 137
+ + + S LSG+LS+AL Y R+ +
Sbjct: 135 QTMSDITHAQDDKVTGSSRLSGALSLALSYTNRMMKLDQSISTTTASAISSAANISNKES 194
Query: 138 --------------------SGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 177
S +L P + D +Y+++M AIF AQ+ V ID L
Sbjct: 195 STAGASSGTNANSYGTSRMKSRILVVTPNDNEDI--KYISLMKAIFGAQKMKVAIDIAKL 252
Query: 178 GAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASC 237
G ++S++LQQA+ T GV+ ++ GL Q L T + + R + LP V+++ASC
Sbjct: 253 GRKDSSYLQQAADATNGVYLHIEKPLGLIQVLCTAYFIEPSIRPLMILPTNSNVNYKASC 312
Query: 238 FCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGSVFGQ 273
F ++++GY+CSVCL I + + C TC S F +
Sbjct: 313 FITGKSVEIGYVCSVCLCIMSEIPDRMSCPTCNSHFDE 350
>gi|406602443|emb|CCH45984.1| RNA polymerase II transcription factor B subunit 4 [Wickerhamomyces
ciferrii]
Length = 361
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 213
+Y+ IMN IF+AQ+ V ID C LG N+ FLQQAS T GV+ + +DGL QY T
Sbjct: 187 KYIPIMNCIFAAQKMKVSIDVCQLGL-NATFLQQASDATNGVYLHIENMDGLIQYFTTAL 245
Query: 214 GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVF 271
D +N L P +DFRASCF +D+G++CSVCL I KC C S F
Sbjct: 246 FIDPSIKNILTKPNKGDIDFRASCFLTGKIVDIGFVCSVCLCILSLIPEDNKCPACDSEF 305
>gi|380484278|emb|CCF40099.1| RNA polymerase II transcription factor B subunit 4 [Colletotrichum
higginsianum]
Length = 157
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 159 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 218
MNA+F+A S +PID+ L + ++ FLQQASYIT G + GL YL+ + D
Sbjct: 1 MNAVFAAAHSQIPIDTLAL-SGDATFLQQASYITDGTFMQAASPRGLLSYLMFAYAADAE 59
Query: 219 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 269
+R+ L P V FRA+CFCH +D G++CS+CLSI+C +C TCG+
Sbjct: 60 ARSSLIPPTHHTVXFRAACFCHGRVVDTGFVCSICLSIFCDVPEGSECLTCGT 112
>gi|149236047|ref|XP_001523901.1| hypothetical protein LELG_04714 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452277|gb|EDK46533.1| hypothetical protein LELG_04714 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 444
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 80/148 (54%), Gaps = 5/148 (3%)
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 209
D Y+ +MN IF+AQ+ V ID LG +S++LQQAS T GV+ K + G+ Q L
Sbjct: 269 DNHLNYIPLMNCIFTAQKLKVSIDVAKLGTTDSSYLQQASDATHGVYLKIEDPRGMIQVL 328
Query: 210 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTC 267
T F + + R + +P VD++ASCF K +D+GY+CSVCL I + KC C
Sbjct: 329 STAFFIEPNLRPHVIMPTDYQVDYKASCFLTKKPVDLGYVCSVCLCIMSFVPDDLKCPAC 388
Query: 268 GSVFGQAQTQS---DEPSATNRKRKTTD 292
S F Q Q D A +K++ D
Sbjct: 389 SSEFDQGIVQELTRDPQVAVVKKKRKLD 416
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+DD +L+ ++LD +P W + + S +L FLN L LN NQV IA+
Sbjct: 20 NDDPTLLTIVLDVSPLGWYNLRHTTSLENITKSLLVFLNGHLALNNSNQVAFIASSSTGS 79
Query: 68 DYVY 71
++Y
Sbjct: 80 KFLY 83
>gi|320594208|gb|EFX06611.1| transcription factor tfiih subunit [Grosmannia clavigera kw1407]
Length = 429
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 74/140 (52%), Gaps = 22/140 (15%)
Query: 152 PEQYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQASYITGG--VHHKPQQLDGLFQY 208
P QY+A MNA+F+A + V ID L GA + FLQQA+YIT G V Q GL Y
Sbjct: 252 PAQYIATMNAVFAAAHAGVAIDVLALRGA--ATFLQQAAYITRGTFVRVGADQKHGLLAY 309
Query: 209 LLTIF--GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--- 263
L+ F + L P VDFRA+CFCH+ +D G++CSVCLSI+C+ +
Sbjct: 310 LMLAFNAASSHDVAQHLVAPSADAVDFRAACFCHRRVVDTGFVCSVCLSIFCEVPPRSDS 369
Query: 264 ------------CSTCGSVF 271
C TCGS+
Sbjct: 370 SSVTATDLPTVECLTCGSLL 389
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W++ + L S+ + ++L F+N+ L L+ N+V V+A+ N ++Y
Sbjct: 20 SLLTIVLDTNPRAWAALAAVLPLSKAVANILVFVNSHLALSSTNRVAVVASHCNRAVWLY 79
>gi|354543147|emb|CCE39865.1| hypothetical protein CPAR2_602840 [Candida parapsilosis]
Length = 381
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 209
D Y+ +MN IF+AQ+ V ID LG +NS++LQQAS T GV+ + G+ Q L
Sbjct: 219 DDSINYIPLMNCIFTAQKLKVSIDVAKLGFKNSSYLQQASDATNGVYLHIEDPRGITQVL 278
Query: 210 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTC 267
T F + R ++ LP V+++ASCF K +D+G++CSVCL I KC C
Sbjct: 279 ATAFFIEPSLRPYIILPTNTQVNYKASCFITKKPVDVGFVCSVCLCIMSSIPDDGKCPAC 338
Query: 268 GSVFGQAQTQ--SDEPS-ATNRKRKTTD 292
S F + + P T +KRK D
Sbjct: 339 SSDFDKRSINELTKIPQVVTKKKRKLED 366
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 15/138 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+D+ SL+ ++LD +P W + +S+S +L FLN L++N NQV IA+ ++
Sbjct: 19 NDEPSLLTIILDISPKGWYNIRNSISLQDVAKSLLVFLNGHLSINNSNQVAFIASSPHTS 78
Query: 68 DYVYDSSSTGNQSVGNGR----------MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
++Y + N G + ++ +LQ L++F+ ++ +Q
Sbjct: 79 KFLYPHPTNANADSGITKSKISPGMYRQFKNVDEVVLQELDQFV---QETSQQLHNATAR 135
Query: 118 CSLLSGSLSMALCYIQRV 135
S ++G++SMAL Y R+
Sbjct: 136 HSSITGAISMALTYTYRM 153
>gi|357629722|gb|EHJ78327.1| putative transcription factor TFIIH-subunit [Danaus plexippus]
Length = 282
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 109/229 (47%), Gaps = 33/229 (14%)
Query: 3 SAPSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
APS D SL+V+++DTNP + + + L V+AF N+ L NQ+ VI
Sbjct: 5 EAPS-----DSSLLVIIVDTNPNQRYITEDPKVLTGCLDAVIAFANSHLMQKSRNQLAVI 59
Query: 61 ATGYNSCDYVYDSSSTG---NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
++ +Y+Y S Q G + +L ++ M + Q E R
Sbjct: 60 GCHFHKSEYLYPSPGKPLDVRQIDGQYELFTLVEKTIK-----MRLVNLIKSQPQEERPG 114
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLHPQP------------RGSPDGPEQYVAIMNAIFSA 165
SLL+G+++M LC+I R+ R QP GS D QY+ MN F+A
Sbjct: 115 ESLLAGAMAMGLCFIARMRRE-----QPPGLRMVSRMLVVTGSSDTAAQYINYMNVFFTA 169
Query: 166 QRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFG 214
Q+ V +D C L ++ + LQQ ITGG++ K L+GL QYLL I+
Sbjct: 170 QKQQVLLDVCSLD-KHLSLLQQGCDITGGLYLKVPSLEGLLQYLLVIYA 217
>gi|336468231|gb|EGO56394.1| hypothetical protein NEUTE1DRAFT_147077 [Neurospora tetrasperma
FGSC 2508]
gi|350289522|gb|EGZ70747.1| transcription factor Tfb4 [Neurospora tetrasperma FGSC 2509]
Length = 439
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 78/170 (45%), Gaps = 55/170 (32%)
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 213
QY+ MNA+F+A + + ID+ L ++ FLQQASYIT G + Q+ GL QYL+ F
Sbjct: 236 QYIPTMNAVFAAAHARIAIDTLALRG-SATFLQQASYITRGTFIRAQEPRGLLQYLMFGF 294
Query: 214 GTDL---------HSR-------------------------------------------N 221
G+ H R +
Sbjct: 295 GSGSAPQGLAAAGHQRSQQQHGGNKGKEDKASEKAVGAAAKGGAKHGGQKFLGSNASVAD 354
Query: 222 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 269
L P VDFRA+CFCH+N ID G++CS+CLSI+C+ +C TCG+
Sbjct: 355 LLVTPSADSVDFRAACFCHRNVIDTGFVCSICLSIFCEVPEGGECLTCGT 404
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 10 SDDV-SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ L ++ L ++L F+N+ L N NQV +IA+ N
Sbjct: 18 TDDIPSLYTIIIDTNPRAWAALNDVLPLTKALANILIFVNSHLAFNNSNQVALIASHTNR 77
Query: 67 CDYVYDSSSTGNQSVGNGRMP 87
++Y ++ N GR P
Sbjct: 78 AVWLYPTAPDQNP----GRQP 94
>gi|341877621|gb|EGT33556.1| hypothetical protein CAEBREN_10115 [Caenorhabditis brenneri]
Length = 311
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 123/278 (44%), Gaps = 46/278 (16%)
Query: 42 LAFLNAILTLNQLNQVVVIATGYN-SCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF 100
++F NA L + NQ++V A G N +Y S+ + +++ + L L+ ++
Sbjct: 51 VSFCNAHLGQSSSNQLLVFAYGRNVEKKMIYSSARSEDRNASRIVVDRLRQLLI---DDS 107
Query: 101 MNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-------------QPRG 147
N D +G + L +L+ A C++++ R P Q
Sbjct: 108 NNSDAIIG----------APLGPALAHAFCHMKKDSRVTTADPCDDSLGPASSNSEQSDA 157
Query: 148 SPDGP--------------EQYVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYIT 192
S + P ++ ++MN FSA + ++ +D LG LQQA+ IT
Sbjct: 158 SAEKPTCRAVVISITQIMGSEHGSLMNLFFSAAKQLICVDVVSLGDDFTGGILQQAADIT 217
Query: 193 GGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSV 252
GG Q+ L + L+T TD R+ VD+RASC CH+ + G++CSV
Sbjct: 218 GGSFMHAQKPQALLKILMTNMLTDPTYRSAFSKLSHNSVDYRASCVCHQTLVSSGWVCSV 277
Query: 253 CLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRKT 290
CLS+ C++ C C + F T + P NRKRK+
Sbjct: 278 CLSVLCQYTPICKVCKAAF----TIRNIPKKPNRKRKS 311
>gi|378726397|gb|EHY52856.1| transcription initiation factor TFIIH subunit H3 [Exophiala
dermatitidis NIH/UT8656]
Length = 455
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 148/392 (37%), Gaps = 136/392 (34%)
Query: 14 SLVVVLLDTNPFFWSSSSLSFSQF--LTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP WS S + S + ++L F+NA L N N+V VIA+ + ++Y
Sbjct: 20 SLLAIILDTNPAAWSLLSSTLSFSSAVANLLVFINAHLAANYTNKVAVIASHCDKATWLY 79
Query: 72 ------------------------DSSSTGNQSVGNG-RMPSLCATLLQNLEEFMNK--- 103
DS+ +V NG + + + EE NK
Sbjct: 80 PTPTEQEPPPPLSSSSHTNNNDLTDSTKRFKLNVNNGTKNNDSIPSSSSSAEETGNKYRP 139
Query: 104 ----DEQL--------GKQEPEG--RIACSLLSGSLSMALCYIQR--------------- 134
+E+L P+ R ++++G+L++AL YI R
Sbjct: 140 FRLVEEELIHNLTTLLASTSPDAVSRSPTTMIAGALTLALSYINRESIAYAESVIGSSGA 199
Query: 135 ---------------------------VFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQR 167
+S +L S D QY+ IMNAIF+ QR
Sbjct: 200 ADTTAAATTNTTTTTGDPNSSSSNNNTSLQSRILLVSVSPSTDLAHQYIPIMNAIFACQR 259
Query: 168 SMVPIDSCYL----------------------------------GAQNSAFLQQASYITG 193
+PID L + ++ FLQQA+ T
Sbjct: 260 LAIPIDILQLPLPLQTNNTTTQAQQTSTNNQTPAGDNNTTTAGNTSNSTVFLQQAADATH 319
Query: 194 GVHHKPQ-------------QLDGLFQYLLTIFGTDLHSRN-FLQLPKPVGVDFRASCFC 239
G+ Q YLLT +R L LP + VDFRA+CFC
Sbjct: 320 GIFIAAQLPKSQSQSQASAASSQAFLTYLLTSLLPSPSTRAAHLILPTRIDVDFRAACFC 379
Query: 240 HKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 269
H+N + +G++CS+CLSI+C C TCG+
Sbjct: 380 HRNVVSVGFVCSICLSIFCSVPENADCLTCGT 411
>gi|85078711|ref|XP_956217.1| hypothetical protein NCU01580 [Neurospora crassa OR74A]
gi|16416034|emb|CAB91384.2| related to basic transcription factor 2 (35 kd SU) [Neurospora
crassa]
gi|28917270|gb|EAA26981.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 439
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 55/170 (32%)
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 213
QY+ MNA+F+A + + ID+ L ++ FLQQASYIT G + Q+ GL QYL+ F
Sbjct: 236 QYIPTMNAVFAAAHARIAIDTLALRG-SATFLQQASYITRGTFIRAQEPRGLLQYLMFGF 294
Query: 214 ----------------------------------------------------GTDLHSRN 221
G++ +
Sbjct: 295 GSGSAPQGLAAAGNQRSQQQHGGHKGKEDKASEKALGAAAKGGAKHGGQKFLGSNASVAD 354
Query: 222 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 269
L P VDFRA+CFCH+N ID G++CS+CLSI+C+ +C TCG+
Sbjct: 355 LLVTPSADSVDFRAACFCHRNVIDTGFVCSICLSIFCEVPEGGECLTCGT 404
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 10 SDDV-SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ L ++ L ++L F+N+ L N NQV +IA+ N
Sbjct: 18 TDDIPSLYTIIIDTNPRAWAALNDVLPLTKALANILIFVNSHLAFNNSNQVALIASHTNR 77
Query: 67 CDYVYDSSSTGNQSVGNGRMP 87
++Y ++ N GR P
Sbjct: 78 AVWLYPTAPDQNP----GRHP 94
>gi|37958350|gb|AAP41125.1| ZK1128.4 [Pristionchus pacificus]
Length = 278
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 122/260 (46%), Gaps = 36/260 (13%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYN-SCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEE 99
++ F N L+L Q NQ+++ A G S +YDS + N P + +++ +
Sbjct: 40 IVTFSNVHLSLAQSNQLLLYAYGNGMSKKLLYDSVRSDN--------PDSSSCIIKGIRG 91
Query: 100 FMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRGS----------- 148
+ ++ G C +L+ +L+ A+C I++ G + S
Sbjct: 92 ALRENSTSGDARK-----CGVLAATLATAICQIRKAATLGTNKSEETISGQKGRIVIISL 146
Query: 149 -PDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQ 207
PD Q+ +MN FSA + + ID LG +SA LQQA+ IT GV +++ L +
Sbjct: 147 LPDFGSQHSLLMNLFFSAHKHDICIDVVSLGG-SSALLQQAADITAGVFQVIHKIEDLPR 205
Query: 208 YLLT--IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCS 265
L+T + + S +F VD+RA+C CH+ + G+ CSVCL++ C + C
Sbjct: 206 ILMTRCLPVSIRDSTSF------TTVDYRAACVCHEKLVSNGWTCSVCLAVLCSFMAICP 259
Query: 266 TCGSVFGQAQTQSDEPSATN 285
+CG+ Q + S E T+
Sbjct: 260 SCGACV-QDHSSSKEEKETD 278
>gi|219113725|ref|XP_002186446.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583296|gb|ACI65916.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 358
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 9/131 (6%)
Query: 146 RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ----NSAFLQQASYITGGVHHKPQ- 200
+ S D Y A MN F+A + + +D C+L A+ +SAFL+QA +TGGV P
Sbjct: 212 QASDDRSRDYNAFMNCAFAAVKQSIVVDGCFLSAKGNHSSSAFLEQACDLTGGVFLSPSG 271
Query: 201 --QLDG-LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIY 257
Q+ G L + L ++F D+ SR L LP VDFRA CF +D+ Y+C+ CLSI+
Sbjct: 272 TAQVGGALTEVLHSVFLADVPSRCLLNLPAINKVDFRARCFETAELVDLAYVCNQCLSIF 331
Query: 258 CKHLKK-CSTC 267
K K C TC
Sbjct: 332 RKQPKNYCPTC 342
>gi|312385025|gb|EFR29618.1| hypothetical protein AND_01266 [Anopheles darlingi]
Length = 516
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 107/215 (49%), Gaps = 26/215 (12%)
Query: 12 DVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
D SL+V++LDTNP + +Q L ++AF NA L N++ V+A +++ ++
Sbjct: 284 DSSLLVIVLDTNPSQRIIREKPHNLTQCLDSIVAFGNAHLMQKAQNKLAVLACHHHATEF 343
Query: 70 VYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIAC-SLLSGS 124
+Y + Q G + +L T+ Q L + K P + SLL+GS
Sbjct: 344 LYPTPGKPLDIRQVDGQYEVFTLVEKTIKQKLANLI-------KTAPHLTLPTESLLAGS 396
Query: 125 LSMALCYIQRVFRSGLLHPQPR---------GSPDGPEQYVAIMNAIFSAQRSMVPIDSC 175
+SMALCYI R+ R+ P + GS + QY+ MN F+AQ+ V +D C
Sbjct: 397 MSMALCYIARINRNK--PPGSKINSRVLVVTGSNECASQYMTYMNVFFTAQKQGVVVDVC 454
Query: 176 YLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL 210
L S LQQ ITGG + + +QLDG QYLL
Sbjct: 455 ALDKALS-LLQQGCDITGGQYLRLEQLDGFLQYLL 488
>gi|367054924|ref|XP_003657840.1| hypothetical protein THITE_2123949 [Thielavia terrestris NRRL 8126]
gi|347005106|gb|AEO71504.1| hypothetical protein THITE_2123949 [Thielavia terrestris NRRL 8126]
Length = 459
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 61/178 (34%)
Query: 152 PEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 211
P QY+ MNA+F+A + + ID+ L ++ FL+QAS+IT G + + GL QYL+
Sbjct: 225 PAQYIPTMNAVFAAAHARIAIDTLSLRG-SATFLEQASFITRGTFIRAAEPRGLLQYLMF 283
Query: 212 IFGT----------------------------------DLHSRNFLQLPKPVG------- 230
FG+ + PKP G
Sbjct: 284 GFGSGSAPSHPAAGGGGAGGTDAGKGPASKPKTSASTANGGGAAGRGRPKPGGASSSSRL 343
Query: 231 -----------------VDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 269
VDFRA+CFCH+N +D G++CS+CLSI+C+ +C TCG+
Sbjct: 344 GLGASVAELLVTPSADAVDFRAACFCHRNVVDTGFVCSICLSIFCEVPDGGECLTCGT 401
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 10 SDDV-SLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ + L S+ + ++L F+NA L + NQV +IA+ N
Sbjct: 18 TDDIPSLCTIIIDTNPRAWAALADVLPISKAIANILIFVNAHLAFSNSNQVALIASHTNR 77
Query: 67 CDYVY 71
++Y
Sbjct: 78 AVWLY 82
>gi|169607795|ref|XP_001797317.1| hypothetical protein SNOG_06960 [Phaeosphaeria nodorum SN15]
gi|160701493|gb|EAT85611.2| hypothetical protein SNOG_06960 [Phaeosphaeria nodorum SN15]
Length = 312
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 121/254 (47%), Gaps = 52/254 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SSS+S S L ++L F+NA L N+ G +
Sbjct: 20 SLLAVVLDTNPHAWAHLSSSISLSAALANILVFINAHLASGNANESRNGTNGDVEMNGAE 79
Query: 72 DSSSTGNQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIACS---LLSGSLSM 127
D+ ++ R +L + +L+N + + ++ E +A + L+ G++SM
Sbjct: 80 DNKPYIAENPNKYRAFALVESAILKNFAKLL-------EETNESHLAATPTTLIGGAISM 132
Query: 128 ALCYIQRVFRSGLLHPQPRG----------------------------------SPDGPE 153
AL YI + S +LH P G S D
Sbjct: 133 ALSYINK---STILH-APTGASAEITSVAAMADTDNSTHLDRIALTSRILIVSVSGDLAN 188
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 213
QY+ +MN+IF+AQR +PID L A ++ LQQAS TGGV+ KP++ +GL QYL+ +
Sbjct: 189 QYIPVMNSIFAAQRKKIPIDILKL-AGDTVLLQQASDATGGVYMKPERPEGLLQYLMMAY 247
Query: 214 GTDLHSRNFLQLPK 227
D +R L +P+
Sbjct: 248 LPDATARKSLIIPR 261
>gi|308501315|ref|XP_003112842.1| hypothetical protein CRE_25211 [Caenorhabditis remanei]
gi|308265143|gb|EFP09096.1| hypothetical protein CRE_25211 [Caenorhabditis remanei]
Length = 317
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 148 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYITGGVHHKPQQLDGLF 206
SP ++ ++MN FSA + + +D +G LQQA+ ITGG Q+ L
Sbjct: 176 SPIMGSEHGSLMNLFFSAAKQSICVDVVSMGDDFTGGILQQAADITGGSFLHAQKPPALL 235
Query: 207 QYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCST 266
+ L+T TD R VD+RASC CH + G++CSVCLS+ C++ C
Sbjct: 236 KILMTNMLTDPSYRTAFSKLSHSSVDYRASCACHHKLVSSGWVCSVCLSVLCQYTPICKV 295
Query: 267 CGSVFGQAQTQSDEPSATNRKR 288
C + F T ++ P NRKR
Sbjct: 296 CRAAF----TITNIPKKPNRKR 313
>gi|351713028|gb|EHB15947.1| General transcription factor IIH subunit 3 [Heterocephalus glaber]
Length = 89
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 49/70 (70%)
Query: 202 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL 261
+ L QYLL +F +D R L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 1 MASLLQYLLWVFLSDQDQRAQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFS 60
Query: 262 KKCSTCGSVF 271
C+TC + F
Sbjct: 61 PICTTCETAF 70
>gi|195447228|ref|XP_002071121.1| GK25630 [Drosophila willistoni]
gi|194167206|gb|EDW82107.1| GK25630 [Drosophila willistoni]
Length = 310
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 15/174 (8%)
Query: 97 LEEFMNKDEQ-LGKQEPEGRIACSLLSGSLSMALCYIQRVFRS---GL-----LHPQPR- 146
+ E M D Q + + SLL+G + ALCYIQR R GL L + R
Sbjct: 134 IAELMRSDAQKVNYNSNAQNTSTSLLAGGIGKALCYIQRRRREITRGLAKGVQLRIEARV 193
Query: 147 ----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQ 201
+ G Q + M+ A+ S V +D C L A+ + +QA+ +TGG ++
Sbjct: 194 LIVTATDPGSNQVINYMHMFNGAKSSRVALDVCILDRAETLSIWRQATALTGGFYYSTND 253
Query: 202 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLS 255
L LL IF R P+ VD+R +C CHKN +D+G++CS CLS
Sbjct: 254 FTDLLTRLLGIFLMSPVERFQFNYPEQPQVDYRPNCVCHKNVLDIGFVCSACLS 307
>gi|124513782|ref|XP_001350247.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
gi|23615664|emb|CAD52656.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
Length = 326
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 132/305 (43%), Gaps = 51/305 (16%)
Query: 16 VVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+++++D N W +L +FL V F+ + ++ +I+T
Sbjct: 28 LILIIDVNLLIWCEGVQIKFENNVIRTLKLHEFLKSVFQFIRFYCIMCNSERICIISTCS 87
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
N+C +Y++ + + N C+ L +F+N++++ K E S LS +
Sbjct: 88 NNCKIIYENYISF--AKNNLTEKDFCSDTYDKLVDFINENKKEKKSE-------SALSSA 138
Query: 125 LSMALCYIQRV------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 178
L++ALCY R+ + L S QY +MN ++A+R+ + ID L
Sbjct: 139 LTIALCYNNRIRNLYENINTRLFLLDISKSHYYTNQYTQLMNIAYNAKRNNIIIDVFSLN 198
Query: 179 AQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNFLQ---L 225
+ + L+Q IT G++ D L Q ++ F +++R + L
Sbjct: 199 YK-TQILEQICNITNGLYLDNTIFQSINPYGNIQDILTQTIIFWFLPSVNTRKYFSNTYL 257
Query: 226 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--KHLK------KCSTCGSVFGQAQTQ 277
+ + A C CH ID+ YICS CL+IYC K+L+ C+ C + F ++ +
Sbjct: 258 NEDTNI---AVCTCHNKQIDIAYICSCCLAIYCSEKNLQTNKDRLSCAICKTRFTKSLLR 314
Query: 278 SDEPS 282
+ S
Sbjct: 315 NKHVS 319
>gi|298711517|emb|CBJ26605.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 223
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSL-----------------SFSQFLTHVLAFLNAILTLNQ 53
++ SL++++LD + FW+ SF + L F+ + L +++
Sbjct: 8 EEPSLLLIILDASSAFWTKREAVRRRQKERPESGEVKLSSFQDTVEATLMFVESYLMMHR 67
Query: 54 LNQVVVIATGYNSCDYVYDSSSTGNQ--SVGNGRMPS------LCATLLQNLEEFMNKDE 105
N+V +A ++ + + + ++G G + + L L + +E DE
Sbjct: 68 RNEVCFVACTARESTIIFPTPAMEREQRTLGRGSVSTKEFQDCLWDGLGRVVERGHAADE 127
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMN 160
G E C+L +GSLS LCYI R R Q R GSPD PE Y ++MN
Sbjct: 128 AGGGDE-----GCAL-AGSLSKGLCYINRKMRESS-SIQARALVLSGSPDVPETYNSVMN 180
Query: 161 AIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK 198
AIFSAQ++ V +D LG ++S FLQQA+Y+TG K
Sbjct: 181 AIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTGKGARK 217
>gi|407044375|gb|EKE42557.1| hypothetical protein ENU1_017690 [Entamoeba nuttalli P19]
Length = 263
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 34/266 (12%)
Query: 18 VLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTG 77
+LLD F ++ L+ + +V + I L +++ I T VY S
Sbjct: 19 ILLDATFFVHNNRKLNVEEIREYVNIINSFIRVLKEIHDNSSIFT------IVYAGKSVF 72
Query: 78 NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR 137
+ G L ++ + ++E +N ++ EP LS ++S+AL I +
Sbjct: 73 VKESDRGE---LTTSIAEAIKEVLN--DKFLVNEPN-------LSSAMSLALTTINK--- 117
Query: 138 SGLLHPQPR------GSP-DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS--AFLQQA 188
G L P + +P + +++ +MN +F+AQR ID+ L + F QQA
Sbjct: 118 DGKLQPDVQKKIIVVSTPFESSPKFIPLMNCVFAAQRIKTTIDTIVLSVIETRCTFCQQA 177
Query: 189 SYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLP--KPVGVDFRASCFCHKNTIDM 246
SY+T G+++ L LF LL+ +D + +++ + +D++ CF K +D
Sbjct: 178 SYLTNGIYNTAT-LQSLFPRLLSNNTSDCDTEKIIRVTGNQQPAIDWKLWCFHCKKPLDH 236
Query: 247 GYICSVCLSIYCKHLK-KCSTCGSVF 271
GY+CS C IYC+ K +C TCG+ F
Sbjct: 237 GYVCSSCFGIYCEKQKGRCPTCGAYF 262
>gi|299751088|ref|XP_001830046.2| basic transcription factor 2.35KD subunit [Coprinopsis cinerea
okayama7#130]
gi|298409214|gb|EAU91711.2| basic transcription factor 2.35KD subunit [Coprinopsis cinerea
okayama7#130]
Length = 280
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+D +L+ V+LD +P W ++ ++ + FL +LAFLNA + N + V
Sbjct: 2 NDHGTLLAVVLDLSPAQWHRAANDPQPITLNAFLAQLLAFLNAHIACMHENTLAVFGAFP 61
Query: 65 NSCDYVY---DSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDEQLGKQEPEGRIACS 119
+Y D T + SV P LL N + + + L E + C+
Sbjct: 62 GKSVMLYASTDQHQTASISVDANSYPPF--KLLDNTVVTSIAAELDALDDSHDEEEVPCA 119
Query: 120 LLSGSLSMALCYIQRVFR-SGLLHPQ--PR-----GSPDGPEQYVAIMNAIFSAQRSMVP 171
L+ G+L+ ALC + S + PQ PR SPD Y+ IMNAIFSAQ+ V
Sbjct: 120 LV-GALTKALCSTTPLPNGSQGVPPQLDPRILILSVSPDLSTSYIPIMNAIFSAQKLKVT 178
Query: 172 IDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 209
ID+C + + FLQQA+++TGG + ++ D L QYL
Sbjct: 179 IDACQIYGGETVFLQQAAHLTGGSYLLLERRDALLQYL 216
>gi|392896378|ref|NP_499249.2| Protein ZK1128.4 [Caenorhabditis elegans]
gi|224490453|emb|CAA87423.2| Protein ZK1128.4 [Caenorhabditis elegans]
Length = 296
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 133/309 (43%), Gaps = 50/309 (16%)
Query: 13 VSLVVVLLDTNPFFW-----SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN-S 66
+S + VL++T+ W + + L +++F NA L + NQ++V A G N
Sbjct: 1 MSTLSVLIETSSCSWGMLASAHGDRTIGIILRAIVSFCNAHLGQSANNQLLVFAYGRNVD 60
Query: 67 CDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y S+ +++ +++ L E ++ D L G + L +L+
Sbjct: 61 NKMIYSSTRCEDRNAS--------FLVVKRLRELLSSDA-LTNDATIG----APLGPALA 107
Query: 127 MALCYIQRVFRSGLLHP-----QPRGSPDGPE---------------------QYVAIMN 160
A C++++ R P P+ + + E ++ ++MN
Sbjct: 108 HAFCHMKKDSRVVTADPCDDSLGPQTTSEQSETASEKATNRAVVISITPIMGSEHGSLMN 167
Query: 161 AIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 219
FSA + + +D +G LQQA+ ITGG ++ L + L+T TD
Sbjct: 168 LFFSAAKQSICVDVVSMGDDFTGGILQQAADITGGSFLHAKKPQTLLKILMTNMLTDPTH 227
Query: 220 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSD 279
R VD+RASC CH + G++CS+CLS+ C++ C C + F T ++
Sbjct: 228 RAVFSKLSHNSVDYRASCACHHQLVSSGWVCSICLSVLCQYTPICKVCKAAF----TIAN 283
Query: 280 EPSATNRKR 288
P NRKR
Sbjct: 284 LPIKPNRKR 292
>gi|380477141|emb|CCF44315.1| RNA polymerase II transcription factor B subunit 4 [Colletotrichum
higginsianum]
Length = 255
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 105/233 (45%), Gaps = 61/233 (26%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ L S+ + +VL F+NA L + NQV + A+ N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALNDVLPLSKAIANVLVFVNAHLAFSNANQVAIFASHSNRAVWLY 79
Query: 72 ----------------DSSSTG--------NQSVGNGRMPSLCATLLQNLEEFMNKDEQL 107
D + TG NQS N + P Q M+ +L
Sbjct: 80 PAKPEPATANGAAASEDVAMTGVDAFAPTPNQSSAN-KFPQFA----QIESAVMSSMRKL 134
Query: 108 GKQEPEGRIACSL--LSGSLSMALCYIQRVFRSGLLHPQPRGSPDGPE------------ 153
E +AC+ LSG+L++AL +I + + L + +PD P
Sbjct: 135 VDATTEAXLACTTTQLSGALTLALAHINK---TSLSLNETNKAPDVPRSTSSALSRLRAR 191
Query: 154 ------------QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGG 194
QY++ MNA+F+A S +PID+ L ++ FLQQASYIT G
Sbjct: 192 IFILSVSDSEPVQYISTMNAVFAAAHSQIPIDTLALSG-DATFLQQASYITDG 243
>gi|167391336|ref|XP_001739730.1| RNA polymerase II transcription factor B subunit [Entamoeba dispar
SAW760]
gi|165896489|gb|EDR23894.1| RNA polymerase II transcription factor B subunit, putative
[Entamoeba dispar SAW760]
Length = 249
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 125/266 (46%), Gaps = 34/266 (12%)
Query: 18 VLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTG 77
+LLD F ++ L+ + +V + I L +++ + T VY S
Sbjct: 5 ILLDATFFVHNNRKLNVEEIREYVNIINSFIRVLKEIHDNSSVFT------IVYAGKSVF 58
Query: 78 NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR 137
+ G + + +++ ++E +N ++ EP LS ++S+AL I +
Sbjct: 59 VKESDRGELTT---PIVEAIKEVLN--DKFLVNEPN-------LSSAMSLALTTINK--- 103
Query: 138 SGLLHPQPR------GSP-DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSA--FLQQA 188
G L P + +P + +++ +MN +F+AQR ID+ L + F QQA
Sbjct: 104 DGKLQPDIQKKVIVISTPFESSPKFIPLMNCVFAAQRIKTTIDTIVLSIIETGCTFCQQA 163
Query: 189 SYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLP--KPVGVDFRASCFCHKNTIDM 246
SY+T G+++ L LF LL+ +D + +++ + +D++ CF K +D
Sbjct: 164 SYLTNGIYNTAP-LQSLFPRLLSNNTSDCDTEKIIRVTGNQQSAIDWKLWCFHCKKPLDH 222
Query: 247 GYICSVCLSIYC-KHLKKCSTCGSVF 271
GY+CS C IYC K ++C TCG+ F
Sbjct: 223 GYVCSSCFGIYCEKQKERCPTCGAYF 248
>gi|116204609|ref|XP_001228115.1| hypothetical protein CHGG_10188 [Chaetomium globosum CBS 148.51]
gi|88176316|gb|EAQ83784.1| hypothetical protein CHGG_10188 [Chaetomium globosum CBS 148.51]
Length = 408
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 134/353 (37%), Gaps = 98/353 (27%)
Query: 10 SDDV-SLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ + L S+ + ++L F+NA L + NQV +IA N
Sbjct: 18 TDDIPSLCTIVIDTNPRAWAALTDVLPISKAIANILVFVNAHLAFSNSNQVSIIAAHTNR 77
Query: 67 CDYVYDSSSTGNQS-----------------VGNGRMPSLCATLLQNLEEFMNK--DEQL 107
++Y + +S + + +LL +L +N D L
Sbjct: 78 AVWLYPAPPRQGRSQDVDMQNAASDSKSSSANKYPQFAQIENSLLTSLRALINDTTDADL 137
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRS---------------------GLLHPQPR 146
+ +SG+L++AL +I + S + P P
Sbjct: 138 ASTTTQ-------ISGALTLALAHINKTALSFTASSTAAHAATNTGTAMTAGTAVGPNPV 190
Query: 147 GSPD---------------------GPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 185
S P QY+ MNA+F+A R+ + ID+ L A L
Sbjct: 191 SSTSMNGGGLAGLHARILILSVSDSAPAQYIPTMNAVFAAARARIAIDTLSLRAAEPRGL 250
Query: 186 QQASYITGGVHHKPQQLDG--------------LFQYLLTIFGTDLHSR----------- 220
Q G P G T H R
Sbjct: 251 LQYLMFGFGSGTAPSNPSGGADSGKGPASSKTATAGGQGTTAAGGRHPRTAKLGLGASVA 310
Query: 221 NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGSVF 271
L P VDFRA+CFCH+N ID G++CSVCLSI+C+ +C TCG+
Sbjct: 311 ELLVTPSADAVDFRAACFCHRNVIDTGFVCSVCLSIFCEVPDGGECLTCGTAL 363
>gi|268573188|ref|XP_002641571.1| Hypothetical protein CBG09872 [Caenorhabditis briggsae]
Length = 299
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 11/145 (7%)
Query: 148 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYITGG--VH-HKPQQLD 203
+P ++ ++MN FSA + + +D + LQQA+ ITGG VH KPQ
Sbjct: 158 TPIIGSEHGSLMNLFFSAAKQSICVDVVSMSDDLTGGILQQAADITGGSFVHAEKPQ--- 214
Query: 204 GLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK 263
L + L+T TD RN VD+RASC CH + G++CS+CLS+ C++
Sbjct: 215 ALLKILMTNMLTDASYRNTFSKLSYCSVDYRASCACHHTLVSSGWVCSICLSVLCQYTPI 274
Query: 264 CSTCGSVFGQAQTQSDEPSATNRKR 288
C C + F T ++ P +RKR
Sbjct: 275 CKVCKAAF----TITNLPKKPSRKR 295
>gi|82541502|ref|XP_724989.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23479826|gb|EAA16554.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 327
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 128/313 (40%), Gaps = 51/313 (16%)
Query: 13 VSLVVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
+S +++++D N WS ++ SQFL V F ++ ++ +IA
Sbjct: 22 MSHLILVIDVNFLIWSQGLKIKFDKNNIKTVKLSQFLKSVFQFTRFYCFMSSSERICIIA 81
Query: 62 TGYNSCDYVYDS--SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
T + +Y++ S T N N C L F+ KD + E + S
Sbjct: 82 TCSGNSKIIYENYISYTKNNLTEND----YCTNAYDKLINFI-KDNNNNTKTYE--MVES 134
Query: 120 LLSGSLSMALCYIQRV------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPID 173
LS +L++ALCY R+ S + S QY +MN ++A+R+ + ID
Sbjct: 135 TLSSALAIALCYNNRICNLYENINSRIFLLDISKSHFYTNQYTQLMNIAYNAKRNKIIID 194
Query: 174 SCYLGAQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNFL 223
L + + L+Q IT G++ D L Q ++ F HSR +
Sbjct: 195 VFSLNHK-TQILEQICNITNGLYIDNSIFLSINCGDNVEDILTQTIMFWFLPSTHSRKYF 253
Query: 224 Q---LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVFG 272
L + + A C CH ID+ YICS CL+IYC K CS C + F
Sbjct: 254 SNTYLNEDTNI---AVCTCHNKQIDIAYICSCCLAIYCSEKDSQTNKERISCSVCKTRFT 310
Query: 273 QAQTQSDEPSATN 285
+A ++ S N
Sbjct: 311 KALLRNKTVSDLN 323
>gi|406695514|gb|EKC98819.1| hypothetical protein A1Q2_06922 [Trichosporon asahii var. asahii
CBS 8904]
Length = 297
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 158 IMNAIFSAQRSMVPIDSCYLGAQNSA-----FLQQASYITGGVHHKPQQLDGLFQYLLTI 212
+MN +F+ Q++ V ID L +++ FLQQA+Y+T G++ + GL QYL ++
Sbjct: 124 LMNCVFAGQKAKVAIDVLTLPPESTMTAPPIFLQQAAYLTEGIYWRWNGRGGLLQYLHSM 183
Query: 213 FGTDLHSRNF-LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+ RN +P VDFRA CFCH + +D+G++C I+C+ CS C + F
Sbjct: 184 YLPPPSLRNKPFTVPPQDAVDFRAVCFCHHDVVDVGFVC-----IFCEVKPICSMCKTKF 238
>gi|67468778|ref|XP_650390.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56467011|gb|EAL45004.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
Length = 263
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 40/269 (14%)
Query: 18 VLLDTNPFFWSSSSLS---FSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSS 74
+LLD F ++ L+ +++ + +F+ + ++ + + +I VY
Sbjct: 19 ILLDATFFVHNNRKLNVEEIREYVNIINSFIRVLKEIHDNSSIFII---------VYAGK 69
Query: 75 STGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQR 134
S + G L ++ + ++E +N ++ EP LS ++S+AL I +
Sbjct: 70 SVFVKESDRGE---LTISIAEAIKEVLN--DKFLVNEPN-------LSSAMSLALTTINK 117
Query: 135 VFRSGLLHPQPR------GSP-DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS--AFL 185
G L P + +P + +++ +MN +F+AQR ID+ L + F
Sbjct: 118 ---DGKLQPDIQKKIIIVSTPFESSPKFIPLMNCVFAAQRIKTTIDTIVLSVIETRCTFC 174
Query: 186 QQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLP--KPVGVDFRASCFCHKNT 243
QQASY+T G+++ L LF LL+ +D + +++ + +D++ CF K
Sbjct: 175 QQASYLTNGIYNTAT-LQSLFPRLLSNNTSDCDTEKIIRVTGNQQPAIDWKLWCFHCKKP 233
Query: 244 IDMGYICSVCLSIYCKHLK-KCSTCGSVF 271
+D GY+CS C IYC+ K +C TCG+ F
Sbjct: 234 LDHGYVCSSCFGIYCEKQKGRCPTCGAYF 262
>gi|68063783|ref|XP_673887.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56492063|emb|CAI02316.1| conserved hypothetical protein [Plasmodium berghei]
Length = 327
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 51/313 (16%)
Query: 13 VSLVVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
+S +++++D N WS ++ SQFL V F ++ ++ +IA
Sbjct: 22 MSHLILVIDVNFLIWSQGLKIKFDKNNIKTVKLSQFLKSVFQFARFYCFMSSSERICIIA 81
Query: 62 TGYNSCDYVYDS--SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
T + +Y++ S T N N C + L F+ KD + E + S
Sbjct: 82 TCSGNSKIIYENYISYTKNNLTEND----YCTNAYEKLINFI-KDNNNNSKTYE--MVES 134
Query: 120 LLSGSLSMALCYIQRV------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPID 173
LS +L++ALCY R+ S + S QY +MN ++A+R+ + ID
Sbjct: 135 TLSSALAIALCYNNRICNLYENINSRIFLLDISKSHFYTNQYTQLMNIAYNAKRNNIIID 194
Query: 174 SCYLGAQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNFL 223
L + + L+Q IT G++ D L Q ++ F HSR +
Sbjct: 195 VFSLNHK-TQILEQICNITNGLYIDNSIFLSINCADNVEDILTQTIMFWFLPSTHSRKYF 253
Query: 224 Q---LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVFG 272
L + + A C CH ID+ YICS CL+IYC K CS C + F
Sbjct: 254 SNTYLNEDTNI---AVCTCHNKQIDIAYICSCCLAIYCSEKDAQTNKERISCSVCKTRFT 310
Query: 273 QAQTQSDEPSATN 285
++ ++ S N
Sbjct: 311 KSLLRNKTVSDLN 323
>gi|402595070|gb|EJW88996.1| hypothetical protein WUBG_00095 [Wuchereria bancrofti]
Length = 274
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 116/243 (47%), Gaps = 32/243 (13%)
Query: 41 VLAFLNAILTLNQLNQVVVIAT-GYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEE 99
+ ++ A ++L+ +N +VVI G S +Y +S++ + + + S+ L ++
Sbjct: 35 ITSYTTAHMSLSAMNGIVVIGVDGTLSEPTIYTTSASSDIDMSSAIKTSIQNALKKSASS 94
Query: 100 FMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR------GSPDGPE 153
D +L + +++ A+C+I R F++ + R GS D
Sbjct: 95 TNTTDS-------------ALFAPAIATAICHIFR-FKNEVDKGDGRILVINIGS-DLLG 139
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL--T 211
++ +MN F+A + + ID +G + S LQQAS ITGG + ++ L +Y + T
Sbjct: 140 EHNILMNIFFAAHKHSILIDVANIG-ETSPILQQASDITGGTYFNVKKPKQLLKYTMCFT 198
Query: 212 IFGTDLHSRNFLQLPKP---VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCG 268
+ L S P P +D+RASC CH + +G++CSVCLS+ C C C
Sbjct: 199 LGRASLRS----AFPSPSSSTSIDYRASCHCHGAPVSVGWVCSVCLSVQCHFSPICPACN 254
Query: 269 SVF 271
+VF
Sbjct: 255 TVF 257
>gi|224006638|ref|XP_002292279.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971921|gb|EED90254.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 409
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 17/187 (9%)
Query: 100 FMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQP---RGSPDGPEQYV 156
N L +++ EG IA L+ GS S + LL P+ + S D Y
Sbjct: 208 LANSSSMLQRKDDEGVIA--LMGGSGSSNFKQQELQHSKSLLSPRALIIQSSSDRTSDYN 265
Query: 157 AIMNAIFSAQRSMVPIDSCYL------GAQNSAFLQQASYITGGVH----HKPQQLDG-L 205
A+MN F+A + + ID C++ A++S +L+Q T GV+ Q+ G L
Sbjct: 266 ALMNCAFAANKQNIVIDGCFIPSGMKDDAKSSPYLEQIVDQTRGVYLSVPSGAAQVGGAL 325
Query: 206 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK-C 264
+ L+++F R + LPK VDFRA CF +ID+ IC+ CLSI+ + K+ C
Sbjct: 326 SEVLISVFLPPPLLRKEMNLPKLTKVDFRARCFETGESIDVAQICNQCLSIFKERPKEFC 385
Query: 265 STCGSVF 271
TCG+V
Sbjct: 386 LTCGAVV 392
>gi|70953884|ref|XP_746016.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526511|emb|CAH87927.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 327
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 129/313 (41%), Gaps = 51/313 (16%)
Query: 13 VSLVVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
+S +++++D N WS ++ SQFL V F ++ ++ +IA
Sbjct: 22 MSHLILVIDVNFLIWSQGLKIKFDKNNIKTVKLSQFLKSVFQFTRFYCFMSSSERICIIA 81
Query: 62 TGYNSCDYVYDS--SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
T + +Y++ S T N N C L +F+ KD + E + S
Sbjct: 82 TCSGNSKIIYENYISYTKNNLTEND----YCTNAYDKLIKFI-KDNNNNSKTYE--MVES 134
Query: 120 LLSGSLSMALCYIQRV------FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPID 173
LS +L++ALCY R+ S + S QY +MN ++A+R+ + ID
Sbjct: 135 TLSSALAIALCYNNRICNLYENINSRIFLLDISKSHFYTNQYTQLMNIAYNAKRNNIIID 194
Query: 174 SCYLGAQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNFL 223
L + + L+Q IT G++ D L Q ++ F +SR +
Sbjct: 195 VFSLNHK-TQILEQICNITNGLYIDNSIFLSITCGDNVEDILTQTIMFWFLPSTNSRKYF 253
Query: 224 Q---LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVFG 272
L + + A C CH ID+ YICS CL+IYC K CS C + F
Sbjct: 254 SNTYLNEDTNI---AVCTCHNKQIDIAYICSCCLAIYCSEKDAQTNKERISCSICKTRFT 310
Query: 273 QAQTQSDEPSATN 285
+A ++ S N
Sbjct: 311 KALLRNKTVSDLN 323
>gi|123976711|ref|XP_001314576.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121897129|gb|EAY02259.1| hypothetical protein TVAG_030750 [Trichomonas vaginalis G3]
Length = 284
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 36/288 (12%)
Query: 14 SLVVVLLDTNPFFWSS-SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
+ +L+D NP W + F F+ H+ +L ++ + + V+A + ++++
Sbjct: 7 EFLAILIDVNPLEWKEMKDIKFDGFMNHLFLYLKQMILSDCILPPCVLAYNQSHAEFIFP 66
Query: 73 SSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE--GRIAC------SLLSGS 124
+ P+ N E+ N E + Q E GR A L +
Sbjct: 67 EPGRTKDVINQKFNPT-------NQEQIKNYFENIIIQIAEFNGRSASIPPTPHVRLDVA 119
Query: 125 LSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 179
LS +LC + + + + R SP+ QY N +F+A+R V ID +L +
Sbjct: 120 LSKSLCLMNNLPNKNI---KKRILAFSVSPETGSQYD---NLLFAAKRLDVVIDVLFLNS 173
Query: 180 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 239
FL QA+ +T G + L QYL ++ T + R+ + LP P +++ A
Sbjct: 174 NRLCFLSQAADLTHGFSKTIKMGAALAQYLFSLPPTTV--RDLMALPAPEPLEYSAPSAD 231
Query: 240 HKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFG-------QAQTQSDE 280
I GYIC VCLSI + + C C + +G Q + +S+E
Sbjct: 232 THKMISRGYICPVCLSILEEACRTCPICNTRYGSVNFYINQTEFKSEE 279
>gi|393909857|gb|EFO22116.2| basic transcription factor 2 [Loa loa]
Length = 274
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 18/164 (10%)
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPR------GSPDGPEQYVAIMNAIFSAQRSMVPI 172
++ + ++++A+C+I R +++ + + R GS D ++ +MN F+A + + I
Sbjct: 101 AVFAPAVAIAICHIFR-YKNEVDNGDGRILIINIGS-DLRGEHSILMNIFFAAHKHNILI 158
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL--TIFGTDLHSRNFLQLPKP-- 228
D +G + S LQQAS ITGG + ++ L +Y + T+ L S P P
Sbjct: 159 DVANIG-EASTILQQASDITGGTYFSVKKPKQLLKYTMCFTLGKASLRS----AFPSPSS 213
Query: 229 -VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
VD+RASC CH + +G++CSVCLS+ C C C +VF
Sbjct: 214 STSVDYRASCHCHGAPVSIGWVCSVCLSVQCHFNPICPACNTVF 257
>gi|241605964|ref|XP_002405599.1| RNA polymerase II transcription initiation factor, putative [Ixodes
scapularis]
gi|215500649|gb|EEC10143.1| RNA polymerase II transcription initiation factor, putative [Ixodes
scapularis]
Length = 291
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 23/206 (11%)
Query: 8 LYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
L D+ SL+V ++DTNP S S+ L + F N+ L LN N++ +IA+ +
Sbjct: 1 LAEDEGSLLVAIIDTNPCASLLESDQGIVSKLLDALSVFCNSHLMLNPCNKLAIIASHSH 60
Query: 66 SCDYVY---DSSSTGNQSVGNGR---MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
++Y SS+ SV +G+ + + ++E + D+ E S
Sbjct: 61 KSTFIYPKPQESSSDTYSV-DGQYELFTEVTGAIKDGVKELVLSDDS------ESAAGES 113
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQP-------RGSPDGPEQYVAIMNAIFSAQRSMVPI 172
LL+G LS+ALCYI R+ + + S + QY+ MN F+AQ+ V I
Sbjct: 114 LLTGGLSLALCYINRIEKESSSQNKIASRILVLSASGESASQYLNFMNVFFTAQKKNVII 173
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHK 198
D+C L ++S LQQ ITGG + K
Sbjct: 174 DACVL-EKDSGLLQQGCDITGGKYMK 198
>gi|397617770|gb|EJK64598.1| hypothetical protein THAOC_14658 [Thalassiosira oceanica]
Length = 263
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 12/148 (8%)
Query: 148 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYL------GAQNSAFLQQASYITGGVH----H 197
SPD Y A+MN F++ +S V +D C++ ++ S L+Q +TGGV+
Sbjct: 114 SPDRTSDYNALMNCAFASSKSSVVVDGCFIPSGLRDDSRTSPVLRQVVDLTGGVYLAVPS 173
Query: 198 KPQQLDGLFQYLLTI-FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI 256
Q+ G +LT F R + LP+ VDFRA CF +D+ ++C+ CLSI
Sbjct: 174 GAAQVGGALGEVLTAAFLPPPRLRGLMNLPESDDVDFRARCFATGRAVDVAWVCNQCLSI 233
Query: 257 YCKHLK-KCSTCGSVFGQAQTQSDEPSA 283
+ + + C TCG+ + + D A
Sbjct: 234 FAERPEGACPTCGAKVLVGEGRGDSKRA 261
>gi|170591206|ref|XP_001900361.1| basic transcription factor 2, 35 kD subunit [Brugia malayi]
gi|158591973|gb|EDP30575.1| basic transcription factor 2, 35 kD subunit, putative [Brugia
malayi]
Length = 274
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 32/243 (13%)
Query: 41 VLAFLNAILTLNQLNQVVVIAT-GYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEE 99
+ ++ A ++L+ +N +VVI G S +Y +S++ + M S T +QN +
Sbjct: 35 ITSYTTAHMSLSAMNGIVVIGVDGTLSEPTIYTTSASSDID-----MSSAVKTSIQNALK 89
Query: 100 FMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR------GSPDGPE 153
+L + +++ A+C+I R F++ + R GS E
Sbjct: 90 KSASSTSTTDS--------ALFAPAIATAICHIFR-FKNEVDKGDGRILIINIGSDLFGE 140
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL--T 211
+ +MN F+A + + ID +G + S LQQAS ITGG + ++ L +Y + T
Sbjct: 141 HNI-LMNIFFAAHKHNILIDVANIG-ETSPILQQASDITGGTYFNVKKPKQLLKYTMCFT 198
Query: 212 IFGTDLHSRNFLQLPKP---VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCG 268
+ L S P P +D+RASC CH + +G++CSVCLS+ C C C
Sbjct: 199 LGRASLRS----AFPSPSSSTSIDYRASCHCHGAPVSVGWVCSVCLSVQCHFSPICPACN 254
Query: 269 SVF 271
+VF
Sbjct: 255 TVF 257
>gi|324508596|gb|ADY43627.1| General transcription factor IIH subunit 3 [Ascaris suum]
Length = 272
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 108/247 (43%), Gaps = 27/247 (10%)
Query: 34 FSQFLTHVLAFLNAILTLNQLNQVVVI---ATGYNSCDYVYDSSSTGNQSVGNGRMPSLC 90
F L+ + +F +A L+L+ N V ++ AT N Y +D ++ P++
Sbjct: 28 FYSLLSAIASFASAHLSLSANNSVSILGVDATLNNPLLYAFD------LTIQIDMTPTIV 81
Query: 91 ATL-LQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS-----GLLHPQ 144
L + L+ N D + Q + + + A C+I R + G +
Sbjct: 82 ERLRMALLKSAGNSDAKCTSQ----------FAPAFATAFCHINRFKKENDGADGRILII 131
Query: 145 PRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG 204
GS EQ A+MN FSA + + +D +G + S LQQA IT G + ++
Sbjct: 132 NIGSDLAREQN-ALMNVFFSAHKQGIVVDVANIG-EPSPVLQQACDITMGAYINVEKPKR 189
Query: 205 LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKC 264
L QYL+ SR+ VD+RASC CH + +CSVCLS+ CK C
Sbjct: 190 LLQYLMFFALGGPDSRSKFTSSVASSVDYRASCHCHGTPASIALVCSVCLSVQCKFNPIC 249
Query: 265 STCGSVF 271
C +VF
Sbjct: 250 PICNTVF 256
>gi|149579196|ref|XP_001517604.1| PREDICTED: general transcription factor IIH subunit 3-like, partial
[Ornithorhynchus anatinus]
Length = 80
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 212 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
+F D R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 2 VFLPDQDQRSQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 61
>gi|298711518|emb|CBJ26606.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 117
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 191 ITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYIC 250
+ GG++ + Q + GL QY+ F R +L+L VDFRA+CFCHK +D+ Y+C
Sbjct: 15 LPGGLYLEHQGV-GLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVC 73
Query: 251 SVCLSIYCKHLKKCSTCGS 269
SVCLS++C+ C+TCG+
Sbjct: 74 SVCLSVFCEFSPVCTTCGT 92
>gi|399218636|emb|CCF75523.1| unnamed protein product [Babesia microti strain RI]
Length = 278
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 122/279 (43%), Gaps = 44/279 (15%)
Query: 16 VVVLLDTNPFFWSS-----SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
+V+++D N WS+ + L+F QF++ + F+ A ++ + +IAT C +
Sbjct: 8 LVLVIDANKRSWSNDGVSDNKLTFIQFVSSLKRFIRAYHCMSSGRTLYIIATNTIYCKII 67
Query: 71 YDSSSTGN-----QSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSL 125
+ + + M S ++ ++L +F+++D +P LS +L
Sbjct: 68 FHGLTDSTLIPTTTNSNTTSMDSTLDSMEESLLKFISEDLPDANPQPT-------LSSNL 120
Query: 126 SMALCYIQRVFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 185
+ + + + + R LL +Q++ ++N FSA N L
Sbjct: 121 N-RIGHKENLSREILLLDYSTNDM-YLKQHIPLLNIGFSAL--------------NMKLL 164
Query: 186 QQASYITGGVHHKPQQLDG---------LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 236
+Q S IT G + + G LFQ LL F S+N L P + A
Sbjct: 165 EQLSDITKGTFLRLMDMYGNDSINIEYALFQTLLFWFLASNDSKNILSPPSLTQISNSAV 224
Query: 237 CFCHKNTIDMGYICSVCLSIYC--KHLKKCSTCGSVFGQ 273
C+CH NTI++GY+CS CL++YC K L C C S F +
Sbjct: 225 CYCHNNTIEIGYLCSSCLTVYCTDKSLIMCKICSSRFAK 263
>gi|392576127|gb|EIW69258.1| hypothetical protein TREMEDRAFT_62112 [Tremella mesenterica DSM
1558]
Length = 297
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 108/254 (42%), Gaps = 67/254 (26%)
Query: 14 SLVVVLLDTNPFFWS-----------------------SSSLSFSQFLTHVLAFLNAILT 50
SL+++++D +P WS SSL+ +F+T +L FLNA L
Sbjct: 3 SLLILIVDLHPLSWSLLSIPPSPQPSDPTLSPIIAKSLPSSLTLEEFITQLLVFLNAHLA 62
Query: 51 LNQLNQVVVIATGYNSCDYVYDSSST----GNQSVGNGRMP--SLCATLLQNLEEFMNKD 104
N+VVV ++ + ST N GN P L + L Q L M+++
Sbjct: 63 SQWGNRVVVYGVSAGKSRLLFPAPSTTRDDTNTPSGNVYEPFRLLDSGLEQGLRGMMSEE 122
Query: 105 EQLGKQEPEGRIACSLLSGSLSMALCYIQRV-----------FRSGLLHPQP-------- 145
G +E +G L +++ ALCY+ R+ R +++ P
Sbjct: 123 ---GAREGKGLNEPPALVAAMTKALCYLNRLSPSTATLQTTDTRMLIINATPGSSFSESD 179
Query: 146 -----RGSPDGPEQYVAIMNAIFSAQRSMVPID-----SCYLGAQNSAFLQQASYITGGV 195
RG YV +MN +F+AQ+ +PID Y FLQQA+++TGG+
Sbjct: 180 SSGGLRGG------YVGLMNCVFAAQKGKIPIDVLTLPPSYTQTSPPIFLQQAAHLTGGM 233
Query: 196 HHKPQQLDGLFQYL 209
+ + G+ QYL
Sbjct: 234 YWRWNGRGGVLQYL 247
>gi|156373212|ref|XP_001629427.1| predicted protein [Nematostella vectensis]
gi|156216427|gb|EDO37364.1| predicted protein [Nematostella vectensis]
Length = 190
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 30/205 (14%)
Query: 14 SLVVVLLDTNPFFW-------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
SL+VV+ D NP W + + +S ++ L ++ N+ L L N + +A N
Sbjct: 8 SLLVVIFDANPVAWGGIAVEGNETQISLTRCLESLMVLCNSYLLLKHNNLLAFVAASTNG 67
Query: 67 CDYVYDSSS-TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSL 125
++Y +S G QS +PS + + EF D L + + A S + L
Sbjct: 68 SKFLYPKASCEGIQS-----LPSQDSKY-EKFSEF--NDTVLREIKKLVGAAQSTVGAKL 119
Query: 126 SMALCYIQRVFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 185
+ I + SPD Y+ +MN+IF+AQ+S ID+C L ++S +L
Sbjct: 120 QPRILII-------------KASPDDASHYMPVMNSIFAAQKSNTCIDACVL-YEHSGYL 165
Query: 186 QQASYITGGVHHKPQQLDGLFQYLL 210
QQA+ ITGGV+ K + L QYL+
Sbjct: 166 QQATDITGGVYLKIPETQALLQYLM 190
>gi|224146905|ref|XP_002336364.1| predicted protein [Populus trichocarpa]
gi|222834814|gb|EEE73263.1| predicted protein [Populus trichocarpa]
Length = 80
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 42/66 (63%)
Query: 159 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 218
MNA FSA RS+VPIDSC +GA N AF QQASYITG V+ KPQQ+ + F ++
Sbjct: 1 MNATFSAPRSLVPIDSCRVGAHNPAFSQQASYITGSVYVKPQQVSLVNHRPFIFFAPEVA 60
Query: 219 SRNFLQ 224
N L
Sbjct: 61 VENLLH 66
>gi|224116574|ref|XP_002331930.1| predicted protein [Populus trichocarpa]
gi|222874602|gb|EEF11733.1| predicted protein [Populus trichocarpa]
Length = 79
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 42/66 (63%)
Query: 159 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 218
MNA FSA RS+VPIDSC +GA N AF QQASYITG V+ KPQQ+ + F ++
Sbjct: 1 MNATFSAPRSLVPIDSCRVGAHNPAFSQQASYITGSVYVKPQQVSLVNHRPFIFFAPEVA 60
Query: 219 SRNFLQ 224
N L
Sbjct: 61 VENLLH 66
>gi|156101255|ref|XP_001616321.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148805195|gb|EDL46594.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 323
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 122/303 (40%), Gaps = 62/303 (20%)
Query: 16 VVVLLDTNPFFW-----------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+++++D N W + +L +FL F+ ++ ++ +IAT
Sbjct: 24 LILVVDVNFMIWCEGLKIKFDKNNVKTLRLPEFLKSTFHFVRFYCLMSNAERICIIATSL 83
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFM--NKDEQLGKQEPEGRIACSLLS 122
SC +Y++ + + N C L EF+ NK E++ + S LS
Sbjct: 84 RSCKILYENYVS--YAKNNLTERDYCEEAYNKLIEFLSENKTEKMME---------SSLS 132
Query: 123 GSLSMALCYIQRVFRSGLLHPQPRG----------SPDGPEQYVAIMNAIFSAQRSMVPI 172
+L++ALCY R+ ++ +G + QY +MN ++A+R+ + I
Sbjct: 133 SALAVALCYNHRIVN---MYENMKGRIFLLDISNETYVYTNQYTQLMNIAYNAKRNNIII 189
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNF 222
D L + L+Q IT G++ D L Q ++ F ++R +
Sbjct: 190 DVFSLNCK-IQLLEQICNITNGLYIDSSIFFNVNCTDNIEDVLTQTMIFWFLPSNNTRKY 248
Query: 223 LQ---LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVF 271
L + A C CH +D+ YICS CL+IYC K C C + F
Sbjct: 249 FSNTYLNDDTNI---AVCSCHNKQVDIAYICSCCLAIYCSEKDEKTNKERTSCFVCKTRF 305
Query: 272 GQA 274
+A
Sbjct: 306 TKA 308
>gi|221057700|ref|XP_002261358.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|194247363|emb|CAQ40763.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 323
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 121/301 (40%), Gaps = 58/301 (19%)
Query: 16 VVVLLDTNPFFW-----------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+++++D N W + +L +FL F+ ++ ++ +IAT
Sbjct: 24 LILVVDVNFMIWCEGLKIKFDKNNVKTLGLPEFLKSTFHFVRFYCLMSSAERICIIATSL 83
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
SC +Y++ + + N C L EF+N+++ E S LS +
Sbjct: 84 RSCRILYENYVS--YAKNNLTERDYCEEAYNKLIEFINENKTEKMME-------SNLSSA 134
Query: 125 LSMALCYIQRVFRSGLLHPQPRG----------SPDGPEQYVAIMNAIFSAQRSMVPIDS 174
L++ALCY R+ ++ +G S QY +MN ++A+R+ + ID
Sbjct: 135 LAVALCYNHRIVN---MYENMKGRIFLLDISNQSYVYTNQYTQLMNIAYNAKRNNIIIDV 191
Query: 175 CYLGAQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNFLQ 224
L + L+Q IT G++ D L Q ++ F ++R +
Sbjct: 192 FSLNYK-IQLLEQICNITNGLYIDTTIFFNVNCTDNIEDVLTQTMIFWFLPSNNTRKYFS 250
Query: 225 ---LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVFGQ 273
L + A C CH +D+ YICS CL+IYC K C C + F +
Sbjct: 251 NTYLNDDTNI---AVCSCHNKQVDIAYICSCCLAIYCSEKDDKTNKDRISCFVCKTRFTK 307
Query: 274 A 274
A
Sbjct: 308 A 308
>gi|207340364|gb|EDZ68737.1| YPR056Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 230
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 29/217 (13%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPR---------GSPDGPE 153
+L K++ E S L+G++S L Y+ R+ + + + R S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQAS 189
QY+ IMN IFSA + PID + G++ S FLQQ +
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTT 228
>gi|389584514|dbj|GAB67246.1| hypothetical protein PCYB_112670, partial [Plasmodium cynomolgi
strain B]
Length = 323
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 58/301 (19%)
Query: 16 VVVLLDTNPFFW-----------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+++++D N W + +L +FL F+ ++ ++ +IAT
Sbjct: 24 LILVVDVNFMIWYEGVKIKFDKNNVKTLRLPEFLKSTFHFVRFYCLMSNSERICIIATSL 83
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
SC +Y++ + + N C L EF+N+++ E S LS +
Sbjct: 84 RSCKILYENYVS--YAKNNLTERDYCEEAYNKLIEFINENKTEKMME-------SSLSSA 134
Query: 125 LSMALCYIQRVFRSGLLHPQPRGSP----------DGPEQYVAIMNAIFSAQRSMVPIDS 174
L++ALCY R+ ++ +G QY +MN ++A+R+ + ID
Sbjct: 135 LAVALCYNHRIVN---MYENMKGRIFLLDISNQIYVYTNQYTQLMNIAYNAKRNDIIIDV 191
Query: 175 CYLGAQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNFLQ 224
L + L+Q IT G++ D L Q ++ F +R +
Sbjct: 192 FSLNYK-IKLLEQICNITNGLYIDSSIFFNVNCTDNIEDVLTQTMIFWFLPSNSTRKYFS 250
Query: 225 ---LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVFGQ 273
L + A C CH +D+ YICS CL+IYC K C C + F +
Sbjct: 251 NTYLNDDTNI---AVCSCHNKQVDIAYICSCCLAIYCSEKDDKTNKDRTSCFVCKTRFTK 307
Query: 274 A 274
A
Sbjct: 308 A 308
>gi|294889292|ref|XP_002772747.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239877280|gb|EER04563.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 383
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 124/315 (39%), Gaps = 55/315 (17%)
Query: 15 LVVVLLDTNPFFWSSSSLS----------------FSQFLTHVLAFLNAILTLNQLNQVV 58
LV ++LD NP+ WSS SL+ + +T F +LT+ ++
Sbjct: 28 LVAIVLDLNPWVWSSYSLASFKVEAPPSEKAMQEKAAGAVTLEALFSALLLTVGAISAAS 87
Query: 59 VIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT-LLQNLEEFMNKDEQLGKQEPEGRIA 117
C + S T + + G P + T L + + F+ + + +
Sbjct: 88 TSGDSLGVC--IVGVSPTKAKILLKGSWPEMDRTALWEAMVGFIKASVKERSRPSTTTTS 145
Query: 118 CSLLSGSLSMALCYIQRVF------RSGLLHP-QPRGSPDGPEQYVAIMNAIFSAQRSMV 170
SL++ LS+ALCY+ + R ++ G + + V + N ++AQ V
Sbjct: 146 SSLIAAGLSLALCYLNKHLTIPGRARCCIVEAVSVYGEANYASEAVPLANCGWAAQDLRV 205
Query: 171 PIDSCYL-----------------------GAQNSAFLQQASYITGGVHHKPQQ---LDG 204
PID C + ++ L Q T GVH ++ + G
Sbjct: 206 PIDLCTVCPGRTPQSSSPSNDRSSSSSSNASPTSATLLVQLCEATRGVHIPSKRCSTVGG 265
Query: 205 LFQYLLTIFGT-DLHSRNFLQL-PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK 262
LFQ L+ F L R L+ P +D + C CH +D GY+CSVCL IYC
Sbjct: 266 LFQSLMFHFSVPSLGEREVLKTRPSARLLDMGSLCACHGLPVDRGYVCSVCLCIYCNDSS 325
Query: 263 K-CSTCGSVFGQAQT 276
C CG+ F + T
Sbjct: 326 GVCRKCGARFKRTAT 340
>gi|225707288|gb|ACO09490.1| TFIIH basal transcription factor complex p34 subunit [Osmerus
mordax]
Length = 208
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 32/195 (16%)
Query: 23 NPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY------ 71
NP +W + + S+ L V+ N+ L + + N++ +IA+ ++Y
Sbjct: 17 NPLWWGQQAQKDPEFTLSKCLDAVMVMGNSHLVMTRTNKLAIIASHCQESHFLYPSKHWK 76
Query: 72 --DSSSTGNQSVGNGRMPSLCAT---LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+ S + G+G+ L + ++ M++ E G Q +LL+GSL+
Sbjct: 77 IGEGSGDVQSASGDGKYELLSVANDLIADEIKNLMSRTEVKGHQTD------TLLAGSLA 130
Query: 127 MALCYIQRVFRSGLLHPQP--------RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 178
ALCYI RV + L Q + + D QY+ MN IF+AQR + ID+C L
Sbjct: 131 KALCYIHRVTKE-LEAGQELKSRILVFKAAEDCARQYMNFMNVIFAAQRQNILIDACVLD 189
Query: 179 AQNSAFLQQASYITG 193
++ S LQQ I G
Sbjct: 190 SE-SGLLQQLISICG 203
>gi|401400847|ref|XP_003880871.1| hypothetical protein NCLIV_039130 [Neospora caninum Liverpool]
gi|325115283|emb|CBZ50838.1| hypothetical protein NCLIV_039130 [Neospora caninum Liverpool]
Length = 580
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 82/193 (42%), Gaps = 33/193 (17%)
Query: 114 GRIAC---SLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGP--EQYVAIMNAIF 163
GR C S+L+G+LS+ALCY+ +V + P+ R GS D QY+ +MN F
Sbjct: 372 GRSLCGEDSMLAGALSLALCYLNKVAKRSARPPERRVLLLDGSLDRSYSSQYMPLMNLAF 431
Query: 164 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK-----PQQLDG----------LFQY 208
+A + + ID C L S +Q I+ GVH K P G L
Sbjct: 432 AAAKGNIVIDCCALCPNPSTISEQLCDISRGVHLKFSQAAPASTSGNSHLDGGLALLQLL 491
Query: 209 LLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KH 260
L IF + L G A CFCH +++ ICS CL+IYC K
Sbjct: 492 LFWIFPSVSLRPAIAALSVHRGRSNAAVCFCHHRPVEVCCICSCCLAIYCSEKDAQTGKE 551
Query: 261 LKKCSTCGSVFGQ 273
C C S F +
Sbjct: 552 RISCDVCKSRFSR 564
>gi|401888190|gb|EJT52153.1| hypothetical protein A1Q1_06259 [Trichosporon asahii var. asahii
CBS 2479]
Length = 323
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 39/147 (26%)
Query: 158 IMNAIFSAQRSM-------------VPIDSCYLGAQNSA-----FLQQASYITGGVHHKP 199
+MN +F+AQ+++ V ID L +++ FLQQA+Y+T G++ +
Sbjct: 124 LMNCVFAAQKAVSLTAVEDELTCQKVAIDVLTLPPESTMTAPPIFLQQAAYLTEGIYWRW 183
Query: 200 QQLDGLFQYL---------------LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTI 244
GL QYL + + L ++ F +P VDFRA CFCH + +
Sbjct: 184 NGRGGLLQYLHVSLLVPSVSADPQSMYLPPPSLRNKPF-TVPPQDAVDFRAVCFCHHDVV 242
Query: 245 DMGYICSVCLSIYCKHLKKCSTCGSVF 271
D+G++C I+C+ CS C + F
Sbjct: 243 DVGFVC-----IFCEVKPICSMCKTKF 264
>gi|413935398|gb|AFW69949.1| hypothetical protein ZEAMMB73_462205 [Zea mays]
Length = 73
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 36/41 (87%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHV 41
MASA SKLYSDD+SLVVV+LDTNPFFW++++L F+ F HV
Sbjct: 1 MASAHSKLYSDDISLVVVVLDTNPFFWAAATLPFADFFAHV 41
>gi|76163131|gb|AAX30917.2| SJCHGC08726 protein [Schistosoma japonicum]
Length = 77
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 209 LLTIFGTDLHSRNFLQLPKP------VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK 262
LL++F R L LP GVDFRA+CFCHK ID+GY+CS+CLS++C+
Sbjct: 1 LLSVFLPSSKMRTSLILPDSRSSGLSFGVDFRAACFCHKRLIDIGYVCSICLSVFCEFNP 60
Query: 263 KCSTCGSVFGQAQTQS 278
C TC + F Q+
Sbjct: 61 ICPTCNTPFVLPTVQN 76
>gi|294947738|ref|XP_002785469.1| hypothetical protein Pmar_PMAR005787 [Perkinsus marinus ATCC 50983]
gi|239899380|gb|EER17265.1| hypothetical protein Pmar_PMAR005787 [Perkinsus marinus ATCC 50983]
Length = 385
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 126/323 (39%), Gaps = 69/323 (21%)
Query: 15 LVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAI-------LTLNQLNQVVVIATGYNSC 67
LV ++LD NP+ WSS SL+ F A+ +TL L +++ G S
Sbjct: 28 LVAIVLDLNPWVWSSYSLA--SFKVEAPPSEKAMQEKAAGAVTLEALFSALLLTVGAIS- 84
Query: 68 DYVYDSSSTGNQSVGN---GRMPSLCATLLQNLEEFMNK---------------DEQLGK 109
++ST S+G G P+ LL+ M++ E+
Sbjct: 85 -----AASTSGDSLGVCIVGVSPTKAKILLKGSWPEMDRTALWEAMVGFIKASVKERSRP 139
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVF------RSGLLHP-QPRGSPDGPEQYVAIMNAI 162
+ SL++ LS+ALCY+ + R ++ G + + V + N
Sbjct: 140 SSTMTTTSSSLIAAGLSLALCYLNKHLTIPGRARCCIVEAVSVYGEANYASEAVPLANCG 199
Query: 163 FSAQRSMVPIDSCYLGAQNS-----------------------AFLQQASYITGGVHHKP 199
++AQ VPID C + + L Q T GVH
Sbjct: 200 WAAQDLRVPIDLCTVCPGRTPQSSSPSNDRSSSSSSNASPTSATLLVQLCEATRGVHIPS 259
Query: 200 QQ---LDGLFQYLLTIFGT-DLHSRNFLQL-PKPVGVDFRASCFCHKNTIDMGYICSVCL 254
++ + GLFQ L+ F L R L+ P +D + C CH +D GY+CSVCL
Sbjct: 260 KRCSTVGGLFQSLMFHFSVPSLGEREVLKTRPSARLLDMGSLCACHGLPVDRGYVCSVCL 319
Query: 255 SIYCKHLKK-CSTCGSVFGQAQT 276
IYC C CG+ F + T
Sbjct: 320 CIYCNDSSGVCRKCGARFKRTAT 342
>gi|19074510|ref|NP_586016.1| hypothetical protein ECU07_0880 [Encephalitozoon cuniculi GB-M1]
gi|19069152|emb|CAD25620.1| hypothetical protein [Encephalitozoon cuniculi GB-M1]
gi|449329589|gb|AGE95860.1| hypothetical protein ECU07_0880 [Encephalitozoon cuniculi]
Length = 213
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 123 GSLSMALCYIQRVFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 182
G L ALC + ++ R D +Y+ + +F+AQR + + S + +N
Sbjct: 74 GDLGYALCLHRDEESQIVIFTLGRERKD---EYLRYLKCMFAAQRFGIRV-SAFSLFENK 129
Query: 183 AFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKN 242
LQ + TGG + + DG ++LL++ GT PKP+G F A+C+CH
Sbjct: 130 TILQCCAS-TGGDYSTSE--DGCLRFLLSLLGTRGE-------PKPLG--FPATCYCHNR 177
Query: 243 TIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQS 278
+ +G +C +CLS++C+ + C C S F + +S
Sbjct: 178 QVLLGLVCPICLSVFCRFVPVCKKCKSKFSFTKYES 213
>gi|303389949|ref|XP_003073206.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB4 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302351|gb|ADM11846.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB4 [Encephalitozoon
intestinalis ATCC 50506]
Length = 213
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 16/156 (10%)
Query: 123 GSLSMALCYIQRVFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 182
G L ALC + R+ S ++ + ++Y+ + +F+AQR V I + L +N
Sbjct: 74 GDLGYALC-LHRLGESQIVIFTLEKERN--DEYLRYLKCMFAAQRFGVRISAFSL-FENK 129
Query: 183 AFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKN 242
LQ + TGG + + DG ++LL++ GT S KP+G F A+C+CH
Sbjct: 130 TILQCCA-ATGGGYSTSE--DGCLRFLLSLLGTKGDS-------KPLG--FPATCYCHNK 177
Query: 243 TIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQS 278
+ +G +C +CLS++C+ + C C S F + +S
Sbjct: 178 QVLLGLVCPICLSVFCRFVPVCKKCKSKFSFVKHES 213
>gi|221502054|gb|EEE27800.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 404
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 81/196 (41%), Gaps = 34/196 (17%)
Query: 112 PEGRIAC---SLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGP--EQYVAIMNA 161
P AC S+L+G+LS+ALC + +V + P+ R GS D QY+ +MN
Sbjct: 193 PRPTTACGEDSMLAGALSLALCCLNKVSKRSARTPERRVLILDGSLDRSYSSQYMPLMNL 252
Query: 162 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ----------------LDGL 205
F+A + + ID C L S +Q I+ GVH K Q L L
Sbjct: 253 AFAAAKGNIVIDCCALSTNPSTIPEQLCDISRGVHLKFAQAAPSASTSGSASLDGGLALL 312
Query: 206 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC------- 258
L IF + L G A CFCH +++ ICS CL+IYC
Sbjct: 313 QLLLFWIFPSMSLRPAIAALSVHRGRSNTAVCFCHHKPVEVCCICSCCLAIYCSEKDAQT 372
Query: 259 -KHLKKCSTCGSVFGQ 273
K C C S F +
Sbjct: 373 GKERISCDVCKSRFSR 388
>gi|403292309|ref|XP_003937192.1| PREDICTED: tectonic-2 [Saimiri boliviensis boliviensis]
Length = 940
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 35/190 (18%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCMDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSSTGNQSVGN-----GRMPSLCA---------TLLQNLEEFMNKD--EQLG 108
++Y N +G+ G PS LL + E + ++ + +
Sbjct: 65 QESRFLYPGK---NGRLGDFFGDPGNPPSEFNPSGSKDGKYELLTSANEVIAEEIKDLMT 121
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIM 159
K + +G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ M
Sbjct: 122 KSDIKGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRIL--VIKAAEDSALQYMNFM 179
Query: 160 NAIFSAQRSM 169
N IF+AQ+ +
Sbjct: 180 NVIFAAQKQL 189
>gi|237838949|ref|XP_002368772.1| hypothetical protein TGME49_066930 [Toxoplasma gondii ME49]
gi|211966436|gb|EEB01632.1| hypothetical protein TGME49_066930 [Toxoplasma gondii ME49]
Length = 547
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 81/196 (41%), Gaps = 34/196 (17%)
Query: 112 PEGRIAC---SLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGP--EQYVAIMNA 161
P AC S+L+G+LS+ALC + +V + P+ R GS D QY+ +MN
Sbjct: 336 PRPTTACGEDSMLAGALSLALCCLNKVSKRSARTPERRVLILDGSLDRSYSSQYMPLMNL 395
Query: 162 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ----------------LDGL 205
F+A + + ID C L S +Q I+ GVH K Q L L
Sbjct: 396 AFAAAKGNIVIDCCALSTNPSTIPEQLCDISRGVHLKFAQAAPSASTSGSASLDGGLALL 455
Query: 206 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC------- 258
L IF + L G A CFCH +++ ICS CL+IYC
Sbjct: 456 QLLLFWIFPSMSLRPAIAALSVHRGRSNTAVCFCHHKPVEVCCICSCCLAIYCSEKDAQT 515
Query: 259 -KHLKKCSTCGSVFGQ 273
K C C S F +
Sbjct: 516 GKERISCDVCKSRFSR 531
>gi|32399081|emb|CAD98321.1| transcription factor, possible [Cryptosporidium parvum]
Length = 311
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 123/308 (39%), Gaps = 51/308 (16%)
Query: 18 VLLDTNPFFW-----SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
++LD+ F S S + S L LN+I Q ++ ++TG +Y
Sbjct: 7 IILDSRSLFRYEDTGESQSNAQSNLLVSGECVLNSIF---QFTRLYNLSTGQKKKLNIYL 63
Query: 73 SSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYI 132
S G + +G + L L E E++ ++ G + +S ++S LC I
Sbjct: 64 CDSKGENLLFDGFISGLTKEL--QFEIMPKMLEEISERISLGEMK---MSPTISKCLCKI 118
Query: 133 Q---------RVFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSA 183
R + ++ + QYV+++N F++Q+ V ID + S
Sbjct: 119 NSTRKKFGYNRSEKDRIILLDASNKDEYISQYVSLLNCGFASQKLDVVIDVVSVTRNPSP 178
Query: 184 FLQQASYITGGVHHKPQQL-DGLFQYLLTIFGTDLHSRN--------FLQLP-------- 226
L I G++ K Q+ D L + + I D H + F LP
Sbjct: 179 LLNNLVDICNGLNLKYSQIVDSLAESNIEINKEDHHWLDQGLTPFLIFHLLPSIQAREEI 238
Query: 227 -------KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGSVFGQAQTQ 277
K G+ A CFCH I++GY+CS CLSI+C K CSTCG+ + Q
Sbjct: 239 FISINKTKQTGL---AVCFCHHQKIEIGYVCSSCLSIFCSRFKAPICSTCGARLKRIPIQ 295
Query: 278 SDEPSATN 285
S+ N
Sbjct: 296 QKTLSSLN 303
>gi|396081719|gb|AFN83334.1| RNA polymerase II transcription [Encephalitozoon romaleae SJ-2008]
Length = 213
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 13/129 (10%)
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 209
+ ++Y+ + +F+AQR V I S + +N LQ TGG + + D ++L
Sbjct: 98 ERKDEYLRYLKCMFAAQRLGVRI-SAFSLFENKTILQ-CCVSTGGDYSTSE--DRCLRFL 153
Query: 210 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGS 269
L++ GT KP+G F A+C+CH I +G +C +CLS++CK + C C S
Sbjct: 154 LSLLGTGGSQ-------KPLG--FPATCYCHNRQILLGLVCPICLSVFCKFIPVCKKCKS 204
Query: 270 VFGQAQTQS 278
F A+ +S
Sbjct: 205 KFSFAKYES 213
>gi|221481332|gb|EEE19726.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 549
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 80/196 (40%), Gaps = 34/196 (17%)
Query: 112 PEGRIAC---SLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGP--EQYVAIMNA 161
P AC S+L+G+LS+ALC + +V + P+ R GS D QY+ +MN
Sbjct: 338 PRPTTACGEDSMLAGALSLALCCLNKVSKRSARTPERRVLILDGSLDRSYSSQYMPLMNL 397
Query: 162 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQL----------------DGL 205
F+A + + ID C L S +Q I+ GVH K Q L
Sbjct: 398 AFAAAKGNIVIDCCALSTNPSTIPEQLCDISRGVHLKFAQAAPSASTSGSASLDGGLALL 457
Query: 206 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC------- 258
L IF + L G A CFCH +++ ICS CL+IYC
Sbjct: 458 QLLLFWIFPSMSLRPAIAALSVHRGRSNTAVCFCHHKPVEVCCICSCCLAIYCSEKDAQT 517
Query: 259 -KHLKKCSTCGSVFGQ 273
K C C S F +
Sbjct: 518 GKERISCDVCKSRFSR 533
>gi|401827001|ref|XP_003887593.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB4 [Encephalitozoon hellem
ATCC 50504]
gi|392998599|gb|AFM98612.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB4 [Encephalitozoon hellem
ATCC 50504]
Length = 213
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 13/129 (10%)
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 209
+ ++Y+ + +F+AQR V I + L +N LQ + TGG + + D ++L
Sbjct: 98 EKKDEYLRYLKCMFAAQRLGVRISAFSL-FENKTILQCCAS-TGGDYSTSE--DKCLRFL 153
Query: 210 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGS 269
L++ GT + KP+G F A+C+CH + +G +C +CLS++CK + C C S
Sbjct: 154 LSLLGTGGNK-------KPLG--FPAACYCHNRQVILGLVCPICLSVFCKFIPVCRKCKS 204
Query: 270 VFGQAQTQS 278
F + ++
Sbjct: 205 KFSFVKYEN 213
>gi|126650916|ref|XP_001388356.1| transcription factor [Cryptosporidium parvum Iowa II]
gi|126117450|gb|EAZ51550.1| transcription factor, putative [Cryptosporidium parvum Iowa II]
Length = 286
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 117/291 (40%), Gaps = 51/291 (17%)
Query: 18 VLLDTNPFFW-----SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
++LD+ F S S + S L LN+I Q ++ ++TG +Y
Sbjct: 7 IILDSRSLFRYEDTGESQSNAQSNLLVSGECVLNSIF---QFTRLYNLSTGQKKKLNIYL 63
Query: 73 SSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYI 132
S G + +G + L L E E++ ++ G + +S ++S LC I
Sbjct: 64 CDSKGENLLFDGFISGLTKEL--QFEIMPKMLEEISERISLGEMK---MSPTISKCLCKI 118
Query: 133 Q---------RVFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSA 183
R + ++ + QYV+++N F++Q+ V ID + S
Sbjct: 119 NSTRKKFGYNRSEKDRIILLDASNKDEYISQYVSLLNCGFASQKLDVVIDVVSVTRNPSP 178
Query: 184 FLQQASYITGGVHHKPQQL-DGLFQYLLTIFGTDLHSRN--------FLQLP-------- 226
L I G++ K Q+ D L + + I D H + F LP
Sbjct: 179 LLNNLVDICNGLNLKYSQIVDSLAESNIEINKEDHHWLDQGLTPFLIFHLLPSIQAREEI 238
Query: 227 -------KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCG 268
K G+ A CFCH I++GY+CS CLSI+C K CSTCG
Sbjct: 239 FISINKTKQTGL---AVCFCHHQKIEIGYVCSSCLSIFCSRFKAPICSTCG 286
>gi|209882598|ref|XP_002142735.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209558341|gb|EEA08386.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 310
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 34/196 (17%)
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPRGSPDGP------------EQYVAIMNAIFSAQRS 168
L+ +S+ LC I + LH + R + D QYV ++N+ ++A +
Sbjct: 110 LASGISICLCKINSDRK---LHSKNRTNKDRILLFDASNEKSYINQYVLLINSSYAALKL 166
Query: 169 MVPIDSCYLGAQNSAFLQQASYITGGVH---------------HKPQQLDGLFQYLL--T 211
V ID C + + S L I+ G++ K DGL +++
Sbjct: 167 DVIIDVCSISSNPSRLLYNVVDISKGIYINYSSIIKNVSSKIDDKSHIQDGLLPFIIFHL 226
Query: 212 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGS 269
+ +L + + + L + CFCH +++G+ICS CL+I+C + C+ CG+
Sbjct: 227 LPSAELRANSLINLSTKSRHSGISVCFCHYKKVEVGFICSSCLAIFCSLFRAPICAACGA 286
Query: 270 VFGQAQTQSDEPSATN 285
F + Q S N
Sbjct: 287 RFKRVPIQQKPLSYLN 302
>gi|119618835|gb|EAW98429.1| general transcription factor IIH, polypeptide 3, 34kDa, isoform
CRA_d [Homo sapiens]
Length = 200
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 23/149 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSSTGNQSVGN-----GRMPSLCAT--------LLQNLEEFMNKD--EQLGK 109
++Y N +G+ G P + LL + E + ++ + + K
Sbjct: 65 QESRFLYPGK---NGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTK 121
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRS 138
+ +G+ +LL+GSL+ ALCYI R+ +
Sbjct: 122 SDIKGQHTETLLAGSLAKALCYIHRMNKE 150
>gi|403223596|dbj|BAM41726.1| uncharacterized protein TOT_040000918 [Theileria orientalis strain
Shintoku]
Length = 332
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 121 LSGSLSMALCYIQRVFRSG------LLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDS 174
L+ ++SM Y+ R+ +S ++ + QY+ +MN F+A + + I++
Sbjct: 141 LTSAISMGCLYLNRITKSKAGFGRKIIIFDVSSRENYKSQYIGLMNIAFTALKQNITINT 200
Query: 175 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN----------FLQ 224
LG Q S L+Q S IT + LD L IF +D+ + N F
Sbjct: 201 LALG-QPSRILEQLSTITNA-----KYLD-----LSKIFQSDVETSNIEQSLSQLISFWL 249
Query: 225 LP-KPVG------VDFR----ASCFCHKNTIDMGYICSVCLSIYC-------KHLKKCST 266
LP + VG + F A C+CH T+++ Y+C C ++YC K+ C
Sbjct: 250 LPSEEVGEILSTKLSFEFGNTAICYCHYKTVEVSYLCPCCFAVYCSEVDDKGKYRMVCMV 309
Query: 267 CGS 269
C S
Sbjct: 310 CSS 312
>gi|71029634|ref|XP_764460.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351414|gb|EAN32177.1| hypothetical protein, conserved [Theileria parva]
Length = 348
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 123/313 (39%), Gaps = 72/313 (23%)
Query: 16 VVVLLDTNPFFWSS----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+V++LD +P WSS + F T + FL ++ N+ ++I +
Sbjct: 29 LVLILDLSPGRWSSGVPLRPEEPEKRIHLHNFFTVLANFLKLFGYMSVRNKTLIITANNH 88
Query: 66 SCDYVY---------DSSSTGNQSVGNG-----------RMPSLCATLLQNLEEFMNKDE 105
S +Y DS N SV ++ + + +F+++
Sbjct: 89 STRILYEGFVYNDWTDSCFGVNSSVYTNSQHCDTDRTGEKVDKTLGVMWNKMIDFISE-- 146
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV------FRSGLLHPQPRGSPDGPEQYVAIM 159
G P+ A + L+ +++ Y+ R+ + ++ S + QY+ +M
Sbjct: 147 --GLTYPD---ADTQLTSAIATGFLYLNRIRMRNEGYGRKIIIFDVSTSENYKSQYIGLM 201
Query: 160 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVH--------------HKPQQLDGL 205
N +SA + I++ LG Q S L+Q S IT G + H Q L L
Sbjct: 202 NIAYSALAQNITINTFALG-QPSRILEQLSSITRGKYLLVSKVLNFDLNFSHINQYLSQL 260
Query: 206 --FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK 263
F YL + ++L S N VG+ C+CH ++D+ Y+C C ++YC +
Sbjct: 261 ITFWYLPSEGMSELLSTNLSFDFGNVGI-----CYCHYKSVDVSYLCPCCFAVYCSEIDD 315
Query: 264 -------CSTCGS 269
C CGS
Sbjct: 316 KGKYRIICMVCGS 328
>gi|449019603|dbj|BAM83005.1| similar to TFIIH subunit TFB4 [Cyanidioschyzon merolae strain 10D]
Length = 399
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 24/146 (16%)
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGA--------QNSAFLQQASYITGGVHHKPQ-QLDG 204
+ V + NA F AQ+ + +D + A Q A LQQ +Y T G++ + +
Sbjct: 250 ESVPLWNAAFCAQQHQLLVDVVRIEATSEPGTKPQARAALQQLAYATQGIYLECRCACAK 309
Query: 205 LFQYLLTIFGTDLHSRNFLQLPKPV---------------GVDFRASCFCHKNTIDMGYI 249
LF +L T + R +L P VD RA+CF + MGY+
Sbjct: 310 LFTHLATYIVPNRLERRYLTRRIPELGSYASGTERCGVVESVDLRATCFQSGKLVHMGYV 369
Query: 250 CSVCLSIYCKHLKKCSTCGSVFGQAQ 275
CS CLS+Y C C + A+
Sbjct: 370 CSRCLSVYSTPQAACIVCDARLDAAE 395
>gi|224106784|ref|XP_002333630.1| predicted protein [Populus trichocarpa]
gi|222837853|gb|EEE76218.1| predicted protein [Populus trichocarpa]
Length = 125
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 32/127 (25%)
Query: 97 LEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRGSPDGPEQYV 156
++EFM KDE+ G+++ QRV +S LL DGPEQ+V
Sbjct: 1 VQEFMIKDEKPGEEQS--------------------QRVIKSSLLPGSSGSP-DGPEQHV 39
Query: 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
A+MNA F S+VPIDSC QAS +TG V+ K QQ+ + F +
Sbjct: 40 AVMNATFCTPCSLVPIDSC-----------QASCVTGCVYVKSQQVSLVNHRPFISFAPE 88
Query: 217 LHSRNFL 223
+ N L
Sbjct: 89 VAVENLL 95
>gi|321265019|ref|XP_003197226.1| hypothetical protein CGB_M0140C [Cryptococcus gattii WM276]
gi|317463705|gb|ADV25439.1| Hypothetical protein CGB_M0140C [Cryptococcus gattii WM276]
Length = 323
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 84/223 (37%), Gaps = 63/223 (28%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFW---------------------SSSSLSFSQFLT 39
M S PS L +V+LDT+P W SS S QF+T
Sbjct: 1 MPSPPSTL--------IVILDTHPLSWHLLSHLPPAPPIPDNKVLDTAKSSPTSLHQFIT 52
Query: 40 HVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPS---------LC 90
++ FLNA L N+VVV +Y S+ + G G P+ L
Sbjct: 53 ILIVFLNAHLASKWGNEVVVYTASAGKATLIYPPSNDKLRQRGEGGKPNANVYRPFQVLD 112
Query: 91 ATLLQNLEEFMNKDEQLGKQEPEGRI-ACSLLSGSLSMALCYIQRVFRS----------- 138
+ + L+E + +++Q E G I + +L+ ALC+I R S
Sbjct: 113 ERIEEGLKEVVREEQQKLDTEGPGFINEPPAMVSALTKALCFINRRILSSAHNDPTALPP 172
Query: 139 -------------GLLHPQPRGSPDGPEQYVAIMNAIFSAQRS 168
GLL + R YV +MN +F+AQ++
Sbjct: 173 SSDPNNNNGDTSGGLLPSKERRQQRMRGGYVGLMNCVFAAQKA 215
>gi|402471701|gb|EJW05288.1| hypothetical protein EDEG_00646 [Edhazardia aedis USNM 41457]
Length = 222
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 20/162 (12%)
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPI 172
E ++ S L+ ++ LC I + S + ++ +A+ + I
Sbjct: 68 EYKVCSSNLAQDIAYTLCLINKNRDSSEARIFVLNLDYQDNNTIQLLKVSTAAKNMKIRI 127
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 232
DS Y Q S L Q ITGG++ + + +FG F +L G D
Sbjct: 128 DS-YSSVQ-SPVLSQVCNITGGIYRTSLDI------FVNLFG-------FYELGDESGTD 172
Query: 233 F-----RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGS 269
C CH N I +G +C +CL+IYC+ + C C +
Sbjct: 173 MSGCFGNVKCICHGNIITLGLVCPICLAIYCRTVPICRVCKT 214
>gi|312078926|ref|XP_003141952.1| basic transcription factor 2 [Loa loa]
Length = 253
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL--T 211
++ +MN F+A + + ID +G + S LQQAS ITGG + ++ L +Y + T
Sbjct: 154 EHSILMNIFFAAHKHNILIDVANIG-EASTILQQASDITGGTYFSVKKPKQLLKYTMCFT 212
Query: 212 IFGTDLHSRNFLQLPKP---VGVDFRASCFCH 240
+ L S P P VD+RASC CH
Sbjct: 213 LGKASLRS----AFPSPSSSTSVDYRASCHCH 240
>gi|58261942|ref|XP_568381.1| hypothetical protein CNM00130 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57230554|gb|AAW46864.1| hypothetical protein CNM00130 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 340
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 81/210 (38%), Gaps = 55/210 (26%)
Query: 14 SLVVVLLDTNPFFW---------------------SSSSLSFSQFLTHVLAFLNAILTLN 52
S ++++LDT+P W +SS S QF+T + FLNA L
Sbjct: 6 STLILVLDTHPLSWHLLAHLPPAPPLPDNKILDNATSSPTSLDQFITILTVFLNAHLASK 65
Query: 53 QLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA-----TLLQNLEEFMNK--DE 105
N+VVV + +Y S+ + G G PS L Q +EE + + E
Sbjct: 66 WGNEVVVYTASAGKAELIYPPSNEKIRQRGEGAKPSANMYRPFQILDQGIEEGLKEVVRE 125
Query: 106 QLGKQEPEGRIACS---LLSGSLSMALCYIQRVF------------------------RS 138
+ GK EG + + +L+ ALC+I R
Sbjct: 126 EEGKLNTEGAGFINQPPAMVSALTKALCFINRRISPSVPADPTALPLSSDPNSGTSDTSG 185
Query: 139 GLLHPQPRGSPDGPEQYVAIMNAIFSAQRS 168
GLL + R YV +MN +F+AQ++
Sbjct: 186 GLLPSKERRQQRMRGGYVGLMNCVFAAQKA 215
>gi|291239973|ref|XP_002739904.1| PREDICTED: general transcription factor IIH, polypeptide 3,
34kDa-like [Saccoglossus kowalevskii]
Length = 143
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 20/136 (14%)
Query: 10 SDDVSLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
++ SL+VV++D NP +W + L F+Q + +L ++N+ L +++ N+V +IA+
Sbjct: 4 EEESSLLVVIVDVNPIWWGKMRIQDENDLKFTQCMESILVYVNSHLMMHRSNKVAIIASH 63
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIAC----- 118
NS ++Y +++ + + E F D+ + K+ + A
Sbjct: 64 TNSSCFLYPTATPTTEEEEDFLRDG-------KYEHFAKIDDTIFKEVKKLMTAHTAELH 116
Query: 119 --SLLSGSLSMALCYI 132
+LL+GSL+MALC I
Sbjct: 117 IDTLLTGSLAMALCCI 132
>gi|336271807|ref|XP_003350661.1| hypothetical protein SMAC_02333 [Sordaria macrospora k-hell]
gi|380094822|emb|CCC07324.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 409
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 10 SDDV-SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ L ++ L ++L F+N+ L N NQV +IA+ N
Sbjct: 18 TDDIPSLYTIIIDTNPRAWAALNDVLPLTKALANILIFVNSHLAFNNSNQVALIASHTNR 77
Query: 67 CDYVYDSSSTGN 78
++Y ++ N
Sbjct: 78 AVWLYPTAPDQN 89
>gi|134118157|ref|XP_772246.1| hypothetical protein CNBM0140 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254857|gb|EAL17599.1| hypothetical protein CNBM0140 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 385
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 31/152 (20%)
Query: 14 SLVVVLLDTNPFFW---------------------SSSSLSFSQFLTHVLAFLNAILTLN 52
S ++++LDT+P W +SS S QF+T + FLNA L
Sbjct: 6 STLILVLDTHPLSWHLLAHLPPAPPLPDNKILDNATSSPTSLDQFITILTVFLNAHLASK 65
Query: 53 QLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLC-----ATLLQNLEEFMNK--DE 105
N+VVV + +Y S+ + G G PS L Q +EE + + E
Sbjct: 66 WGNEVVVYTASAGKAELIYPPSNEKIRQRGEGAKPSANMYRPFQILDQGIEEGLKEVVRE 125
Query: 106 QLGKQEPEGRIACS---LLSGSLSMALCYIQR 134
+ GK EG + + +L+ ALC+I R
Sbjct: 126 EEGKLNTEGAGFINQPPAMVSALTKALCFINR 157
>gi|198471480|ref|XP_002133743.1| GA22626 [Drosophila pseudoobscura pseudoobscura]
gi|198145935|gb|EDY72370.1| GA22626 [Drosophila pseudoobscura pseudoobscura]
Length = 390
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 67/159 (42%), Gaps = 14/159 (8%)
Query: 119 SLLSGSLSMALCYIQRVFR-----SGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRS 168
SLL+ SL +ALCYIQ+ R S Q R GS + Y N I A +
Sbjct: 157 SLLAESLGLALCYIQKRRRQIPNTSHGRSVQGRILIVTGSVLHEDVYKNYDNVIQEALET 216
Query: 169 MVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKP 228
V I+ C + LQ+A+ T G++ L L+ F L+ ++ P+
Sbjct: 217 NVTINVCAVKVPKQLPLQRATDTTDGLYFCTNDTMSLSGDLVDHF---LYPTYLIKSPRS 273
Query: 229 VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTC 267
+ A C CH +G++C C + CKH C C
Sbjct: 274 -HIAVPARCACHGFGNKIGFVCGKCKLVLCKHSPYCDDC 311
>gi|160331405|ref|XP_001712410.1| hypothetical protein HAN_2g261 [Hemiselmis andersenii]
gi|159765858|gb|ABW98085.1| hypothetical protein HAN_2g261 [Hemiselmis andersenii]
Length = 293
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 148 SPDGPEQYVAIMNAIFS-AQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 206
S ++++A N +F AQ++ D+ G ++ F S T G++ +P L LF
Sbjct: 162 SSKTRKEHIAFSNQLFFLAQKNKFSFDTLLFGRKDCFFFHFLSEKTKGIYCRP--LKNLF 219
Query: 207 QY---------LLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDM----GYICSVC 253
+ LL++F T SR F LP F KNT ++ + C +C
Sbjct: 220 ELAFTEEFITILLSLFLTSPFSREFYILP------FSTKILNKKNTTNLIAKKKFSCPIC 273
Query: 254 LSIYCKHLKKCSTCGSVFG 272
SI+ C CG VF
Sbjct: 274 FSIFNFLFTNCFVCGFVFS 292
>gi|164662823|ref|XP_001732533.1| hypothetical protein MGL_0308 [Malassezia globosa CBS 7966]
gi|159106436|gb|EDP45319.1| hypothetical protein MGL_0308 [Malassezia globosa CBS 7966]
Length = 276
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 81/215 (37%), Gaps = 53/215 (24%)
Query: 15 LVVVLLDTNPFFWSSSS-----------------LSFSQF---LTHVLAFLNAILTLNQL 54
+VV+LD N + W S ++FS + VL FLNA +
Sbjct: 23 FLVVILDLNAYAWQHVSETAKESEPSSTPSQQADVAFSTLKDTILSVLVFLNAYTAMQHG 82
Query: 55 NQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMP-----SLCATLLQNLEEFMNKDEQLGK 109
N +VV + +Y SS + + R P S C Q + + L
Sbjct: 83 NGLVVYGAATGTARLLYSSSPHVHPDTHSRRTPQDTHVSACLPFKQMDDAVFHGMRALFD 142
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVF-----------RSGLLHPQPR------------ 146
+G + +L++ALC++ R+ SG L + R
Sbjct: 143 DARDGARGPVGMVRALALALCHMHRLSTVLSESTTTDPHSGALGARTRRGRNTSFLQRIL 202
Query: 147 ---GSPDGPEQYVAIMNAIFSAQRSMVPID--SCY 176
+PD QYV +MN IFSAQ+ + +D SC+
Sbjct: 203 VLSATPDVSAQYVPMMNCIFSAQKQGIQVDARSCF 237
>gi|387592672|gb|EIJ87696.1| hypothetical protein NEQG_02243 [Nematocida parisii ERTm3]
gi|387595301|gb|EIJ92926.1| hypothetical protein NEPG_02325 [Nematocida parisii ERTm1]
Length = 210
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 163 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 222
F+A++ + +D C + N F+ Q S + + LF+YL+ + D F
Sbjct: 111 FTARKLNIHVD-CII--PNDGFVSQVSDVLKRPAFCISSGESLFEYLMGMLSID-----F 162
Query: 223 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
++ + + C CH I GY+C +CL +YCK + C C + F
Sbjct: 163 GRISRK---NVHRFCICHNKEIQTGYLCPICLGLYCKFVPLCKHCKTRF 208
>gi|269860080|ref|XP_002649763.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB4 [Enterocytozoon
bieneusi H348]
gi|220066822|gb|EED44293.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB4 [Enterocytozoon
bieneusi H348]
Length = 202
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 228 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFG 272
P+ +F +C+C TI +G+ CS+CL+IYCK + C C F
Sbjct: 155 PILNNFGVNCYCCNKTIYLGFCCSICLTIYCKFIPICKKCKIKFN 199
>gi|378754778|gb|EHY64807.1| hypothetical protein NERG_02210 [Nematocida sp. 1 ERTm2]
Length = 210
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 163 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 222
F+A++ + +D C + + F Q S + + LF+YL+ + D F
Sbjct: 111 FTAKKQNIHVD-CVI--PHDGFASQISDVLNRPAFSISSNESLFEYLMGMLSMD-----F 162
Query: 223 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
++ K + C CH I GY+C +CL +YCK + C C + F
Sbjct: 163 GRISKK---NLSRFCICHHKEIQTGYLCPICLGLYCKFVPLCKHCKTRF 208
>gi|429963037|gb|ELA42581.1| hypothetical protein VICG_00333 [Vittaforma corneae ATCC 50505]
Length = 215
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 213
QY+ + +F AQ +PI + ++ +GG+ + +FQ L
Sbjct: 110 QYLEYLKCMFVAQHRKIPIHG--FSLHRNILVRMCCEGSGGIFLESCSFSDMFQLL---- 163
Query: 214 GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
G ++ Q+ C C N + +G +C VCL +YCK + C C + F
Sbjct: 164 GNRTKKKDAYQI----------KCACCNNFVTLGLVCPVCLLVYCKFMPVCKKCKTKF 211
>gi|68065658|ref|XP_674813.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56493631|emb|CAH95047.1| hypothetical protein PB001049.00.0 [Plasmodium berghei]
Length = 89
Score = 42.4 bits (98), Expect = 0.26, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 235 ASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVFGQAQTQSDEPSATN 285
A C CH ID+ YICS CL+IYC K CS C + F ++ ++ S N
Sbjct: 27 AVCTCHNKQIDIAYICSCCLAIYCSEKDAQTNKERISCSVCKTRFTKSLLRNKTVSDLN 85
>gi|440302599|gb|ELP94906.1| RNA polymerase II transcription factor B subunit, partial
[Entamoeba invadens IP1]
Length = 188
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 121 LSGSLSMALCYIQRVFRSG-LLHPQ--PRGSP-DGPEQYVAIMNAIFSAQRSMVPIDSCY 176
LS ++S A+C I +S LH + +P + ++ +MN IF+AQ+ V ID+
Sbjct: 89 LSAAMSSAMCRINSYSKSNPTLHKKIVAISTPLNAAPTFITVMNNIFAAQKIGVSIDTIV 148
Query: 177 LGAQNS--AFLQQASYITGGVHHKPQQLDGLFQYLL 210
+ QQASY+T G+++ LD L LL
Sbjct: 149 ISDNEEPCTICQQASYLTNGIYNM-SSLDTLLPRLL 183
>gi|395755950|ref|XP_003780047.1| PREDICTED: general transcription factor IIH subunit 3-like,
partial [Pongo abelii]
Length = 61
Score = 40.8 bits (94), Expect = 0.74, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 1 DELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIAS 57
>gi|195389498|ref|XP_002053413.1| GJ23349 [Drosophila virilis]
gi|194151499|gb|EDW66933.1| GJ23349 [Drosophila virilis]
Length = 490
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 194 GVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVC 253
G + +GL +L F L PK +D RA C+CH I++G CS C
Sbjct: 9 GFYFDTSAFEGLCMNVLCQFLASTQRVYHLNYPKQSPMDLRALCYCHNKRIEIGRACSNC 68
Query: 254 LS 255
LS
Sbjct: 69 LS 70
>gi|291000862|ref|XP_002682998.1| RNA polymerase II transcription factor TFIIH subunit [Naegleria
gruberi]
gi|284096626|gb|EFC50254.1| RNA polymerase II transcription factor TFIIH subunit [Naegleria
gruberi]
Length = 349
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 237 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCG 268
C CHK GYIC C S YC +CSTCG
Sbjct: 240 CLCHKKITPGGYICPRCKSKYCDLPVECSTCG 271
>gi|413935397|gb|AFW69948.1| hypothetical protein ZEAMMB73_462205, partial [Zea mays]
Length = 22
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 246 MGYICSVCLSIYCKHLKKCSTC 267
MGY+CSVCLSI+C++ K CSTC
Sbjct: 1 MGYVCSVCLSIFCRNQKTCSTC 22
>gi|429965399|gb|ELA47396.1| hypothetical protein VCUG_01165 [Vavraia culicis 'floridensis']
Length = 215
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 176 YLGAQNSAFLQQAS----YITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL---PKP 228
YL SAF+ + I+ HHK L + F + FLQ+ KP
Sbjct: 113 YLKYLKSAFVAKRYSDRYNISVLSHHKNPALSEI-----GCFYNNFALSTFLQILSGKKP 167
Query: 229 VGVDF-RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFG 272
+ F C CH I G +C VCLSIYC + C C F
Sbjct: 168 QKIFFCSTKCSCHDREILYGLVCPVCLSIYCSLIPICKRCRIRFN 212
>gi|84997465|ref|XP_953454.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65304450|emb|CAI76829.1| hypothetical protein, conserved [Theileria annulata]
Length = 391
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 62/159 (38%), Gaps = 37/159 (23%)
Query: 147 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGG------------ 194
S + QY+ +MN +SA + I++ LG Q S L+Q S IT
Sbjct: 214 NSENYKSQYIGLMNIAYSALSQNITINTFALG-QPSRILEQLSAITNAKYLLVSKLLNFD 272
Query: 195 --VHHKPQQLDGLFQYLL--TIFGTDLHSRNFLQ-LPKPVGVDF--RASCFCHKNTIDMG 247
+H Q L L L+ I L S + L + DF C+CH ++D+
Sbjct: 273 LNFNHINQYLTQLITVLILFIILFWYLPSEGMSEMLSTNLSFDFGNVGICYCHYKSVDVT 332
Query: 248 YICSVCLS----------IYC-------KHLKKCSTCGS 269
Y+C C + +YC K+ C CGS
Sbjct: 333 YLCPCCFAGNFYSLIRFIVYCSEIDDKGKYRIICMVCGS 371
>gi|118401911|ref|XP_001033275.1| hypothetical protein TTHERM_00420200 [Tetrahymena thermophila]
gi|89287623|gb|EAR85612.1| hypothetical protein TTHERM_00420200 [Tetrahymena thermophila
SB210]
Length = 351
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 204 GLFQYL--LTIFGTDLHSRNFLQLPK-PV-------GVDFRASCFCHKNTID--MGYICS 251
LF Y+ L + D+ ++ QL K PV V FR +C CH +D + Y+CS
Sbjct: 270 DLFNYISILMLTSGDMLAKPEQQLTKNPVFRPAINEKVQFRVNCSCHNTPMDSDIAYVCS 329
Query: 252 VCLSIYCKH 260
CL +YCK
Sbjct: 330 DCLFLYCKQ 338
>gi|440492213|gb|ELQ74803.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB4 [Trachipleistophora
hominis]
Length = 247
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 222 FLQL---PKPVGVDF-RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFG 272
FLQ+ KP + F C CH I G +C VCLSIYC + C C F
Sbjct: 190 FLQILCGRKPQKIFFCSTKCNCHGREILYGLVCPVCLSIYCSLIPICKRCRIRFN 244
>gi|403359548|gb|EJY79438.1| putative: similar to general transcription factor IIH, polypeptide
3, 34kDa [Oxytricha trifallax]
gi|403360227|gb|EJY79783.1| putative: similar to general transcription factor IIH, polypeptide
3, 34kDa [Oxytricha trifallax]
Length = 255
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 23/88 (26%)
Query: 150 DGPEQYVAIMNAIFSAQRSMVPIDSCYL--------------------GAQNSAFLQQAS 189
+ P QY +++NAIF+AQ+ + +DS + + S+ LQQA+
Sbjct: 154 EDPSQYSSLVNAIFAAQKLKISVDSLIIQYAPPQAIQEPQDGKQQPASQEEESSLLQQAA 213
Query: 190 YITGGVHHK--PQQLDG-LFQYLLTIFG 214
+T G +K LD LF LL +F
Sbjct: 214 LLTNGTSYKLFSNNLDSELFPTLLELFS 241
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,504,652,171
Number of Sequences: 23463169
Number of extensions: 184544853
Number of successful extensions: 377828
Number of sequences better than 100.0: 394
Number of HSP's better than 100.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 376410
Number of HSP's gapped (non-prelim): 534
length of query: 293
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 152
effective length of database: 9,050,888,538
effective search space: 1375735057776
effective search space used: 1375735057776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)