BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022678
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05B56|TF2H3_BOVIN General transcription factor IIH subunit 3 OS=Bos taurus GN=GTF2H3
PE=2 SV=1
Length = 309
Score = 171 bits (432), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 161/292 (55%), Gaps = 36/292 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCATLLQNLEEFMNKDEQLG 108
++Y + GN S +G+ L A EE + +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDGKYELLTAANEVIAEEI---KDLMT 121
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIM 159
K + EG+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ M
Sbjct: 122 KSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYMNFM 179
Query: 160 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 219
N IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 180 NVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQ 238
Query: 220 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 239 RSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>sp|Q561R7|TF2H3_RAT General transcription factor IIH subunit 3 OS=Rattus norvegicus
GN=Gtf2h3 PE=2 SV=1
Length = 309
Score = 170 bits (431), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 160/295 (54%), Gaps = 42/295 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ NA L +N+ NQ+ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANAHLFMNRSNQLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
++Y D + +G++ + + + + +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNALPDCNPSGSKDGKYELLTAANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYV 156
G+ +LL+GSL+ ALCYI R +S +L + + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRASKAVKDNQEMKSRIL--VIKAAEDSALQYM 176
Query: 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 NFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPD 235
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 QDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>sp|Q8VD76|TF2H3_MOUSE General transcription factor IIH subunit 3 OS=Mus musculus
GN=Gtf2h3 PE=1 SV=1
Length = 309
Score = 168 bits (425), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 159/295 (53%), Gaps = 42/295 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ NQ+ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANSHLFMNRSNQLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
+Y D + +G++ + + + +++ M K +
Sbjct: 65 QESRLLYPGKNGGLGDFFGDPGNALPDCNPSGSKDGKYELLTVANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYV 156
G+ +LL+GSL+ ALCYI RV +S +L + + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRVNKAVKDNQEMKSRIL--VIKAAEDSALQYM 176
Query: 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 177 NFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPD 235
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 QDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>sp|Q13889|TF2H3_HUMAN General transcription factor IIH subunit 3 OS=Homo sapiens
GN=GTF2H3 PE=1 SV=2
Length = 308
Score = 167 bits (423), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 162/288 (56%), Gaps = 29/288 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRV---------FRSGLLHPQPRGSPDGPEQYVAIMNAIF 163
+G+ +LL+GSL+ ALCYI R+ +S +L + + D QY+ MN IF
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRIL--VIKAAEDSALQYMNFMNVIF 182
Query: 164 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 223
+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L
Sbjct: 183 AAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQL 241
Query: 224 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 242 ILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>sp|Q86IB5|TF2H3_DICDI General transcription factor IIH subunit 3 OS=Dictyostelium
discoideum GN=gtf2h3 PE=3 SV=1
Length = 372
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 149/257 (57%), Gaps = 19/257 (7%)
Query: 32 LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVG--------- 82
+ F++FL H + F+NA L LNQ NQ+ +I + +V+ S+
Sbjct: 90 IGFNKFLEHFMVFINAYLMLNQENQLAIICSKIGESSFVFPQSNIDQYQQEQQELEQRQL 149
Query: 83 --NGRM-PSLCATLL-QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR- 137
NG + P+ T+ Q L + D ++ + + I S S S+S+ALCYI R+ R
Sbjct: 150 NENGELLPTPNKTIQGQILAKLQKLDLEIKHDQTD--ILSSSFSASMSIALCYINRIKRE 207
Query: 138 SGLLHPQP---RGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGG 194
+ + P+ SPD QY+++MN IFS+Q+ +P+DSC L +S FLQQAS++T G
Sbjct: 208 TPTIKPRILVFNISPDVSSQYISVMNCIFSSQKQSIPVDSCILSQSDSTFLQQASHLTSG 267
Query: 195 VHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCL 254
++ KPQ+ + L QYLLT F D SR L P VD+RASCFCHK +D+GY+CSVCL
Sbjct: 268 IYLKPQKQELLSQYLLTTFLLDTLSRKSLAYPTLKSVDYRASCFCHKRIVDIGYVCSVCL 327
Query: 255 SIYCKHLKKCSTCGSVF 271
SI+C H CSTCG+ F
Sbjct: 328 SIFCGHSSSCSTCGTKF 344
>sp|O74366|TFB4_SCHPO RNA polymerase II transcription factor B subunit 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb4 PE=1 SV=1
Length = 297
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 148/279 (53%), Gaps = 29/279 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+D SL+VV+LD NP W S S + S+ L + FLNA L + N+V V+A+ +
Sbjct: 20 NDTPSLLVVILDANPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKV 79
Query: 68 DYVYDSSSTGNQSVGN----------GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+Y+Y S + Q V + + +L ++ M+ +++ ++
Sbjct: 80 EYLYPSIA-PEQKVAEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSRK------- 131
Query: 118 CSLLSGSLSMALCYIQRV-----FRSGLLHPQPRGSPDGPEQYVAIMNAIFSAQRSMVPI 172
+++SG+LS AL YI +V RS +L G D QY+ MN IF AQ+ +PI
Sbjct: 132 -TMISGALSRALAYINQVQNKNTLRSRILIFSLTG--DVALQYIPTMNCIFCAQKKNIPI 188
Query: 173 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 232
+ C + + FL+QA+ TGG++ K GL QYL+ D + R L P VD
Sbjct: 189 NVCNIEG-GTLFLEQAADATGGIYLKVDNPKGLLQYLMMSLFPDQNLRKHLNTPNQANVD 247
Query: 233 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 271
FRA+CFCHK +D+G++CSVCLSI+C+ CSTC + F
Sbjct: 248 FRATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTCHTKF 286
>sp|Q6FWA7|TFB4_CANGA RNA polymerase II transcription factor B subunit 4 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB4 PE=3 SV=1
Length = 335
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 139/295 (47%), Gaps = 33/295 (11%)
Query: 10 SDDV-SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
++D+ SL+ V+LD +P W S S + L ++ FLN+ L N NQV VIA
Sbjct: 19 TEDIPSLLTVVLDISPRLWAEFDHRSGEKQSVTTVLKSLIVFLNSHLAFNSANQVAVIAA 78
Query: 63 GYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK------QEPEGR 115
Y+Y SS T Q+ GN + S+ ++ + F N DE L + Q E
Sbjct: 79 FSQGIQYLYPRSSDTSEQNAGNSKDLSIISSHM--YRRFRNVDETLIEEFYKLYQREESL 136
Query: 116 I----ACSLLSGSLSMALCYIQRV--------FRSGLLHPQPRGSPDGPE--QYVAIMNA 161
I S LSG+++ AL Y R+ RS LL S + E QY+ IMN
Sbjct: 137 IDKPVQKSTLSGAMAAALTYTNRLTKEFESISLRSRLLVITCGSSREKDEIFQYIPIMNC 196
Query: 162 IFSAQRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSR 220
IFSA + PID +G + S FLQQ + T GV+ + +G+ QYL T D R
Sbjct: 197 IFSATKLKCPIDVIKIGGNKQSTFLQQTTDATNGVYIHLESTNGIIQYLSTAMSIDPSLR 256
Query: 221 NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 273
+ P VDFR SC+ + +GYICSVCL + KC C S F +
Sbjct: 257 QIIVRPTQGSVDFRTSCYLTGKVVAIGYICSVCLCVLSIIPPGNKCPACDSQFDE 311
>sp|Q75B93|TFB4_ASHGO RNA polymerase II transcription factor B subunit 4 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB4 PE=3 SV=1
Length = 341
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 128/299 (42%), Gaps = 32/299 (10%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
+L + SL+ +++DTNP W+ Q L + FLNA L+ N NQV VI
Sbjct: 17 QLVEETPSLLTLVIDTNPKLWAEFDREVGKKGQLMQVLKSTIVFLNAHLSFNNSNQVSVI 76
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE-----------QLGK 109
A Y+Y + S + F N DE Q K
Sbjct: 77 AACSRGIKYLYPQADDKEGSTKKKKSEDRSIINRNMYRGFRNVDEAVVEELYRVFQQESK 136
Query: 110 QEPEG--RIACSLLSGSLSMALCYIQRV--------FRSGLLHPQ--PRGSPDGPEQYVA 157
Q +G + S LSG++S L YI R+ +S LL S D QY+
Sbjct: 137 QLEDGVPQPFRSTLSGAMSAGLTYINRITHETEGVSLKSRLLVITCGSSASKDEVFQYIP 196
Query: 158 IMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 216
IMN IFSA + PID +G + S FLQQA+ T G + DGL QYL T D
Sbjct: 197 IMNCIFSATKMKCPIDVVKVGGVKESTFLQQATDATNGNYLHVANTDGLIQYLSTAMFID 256
Query: 217 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 273
R ++ P VDFR SC+ + +G++CSVCL + KC C S F +
Sbjct: 257 PSLRQWVVKPNQSSVDFRTSCYLTGKVVAIGFVCSVCLCVLSIIPPGNKCPACDSEFDE 315
>sp|Q12004|TFB4_YEAST RNA polymerase II transcription factor B subunit 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB4 PE=1
SV=1
Length = 338
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 137/303 (45%), Gaps = 31/303 (10%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGL----------LHPQPRGSPDGPE 153
+L K++ E S L+G++S L Y+ R+ + + L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 154 QYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 212
QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATA 251
Query: 213 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 270
D R + P VDFR SC+ + +G+ICSVCL + KC C S
Sbjct: 252 MFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLSIIPPGNKCPACDSQ 311
Query: 271 FGQ 273
F +
Sbjct: 312 FDE 314
>sp|Q6BL86|TFB4_DEBHA RNA polymerase II transcription factor B subunit 4 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB4 PE=3 SV=2
Length = 387
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 150/348 (43%), Gaps = 73/348 (20%)
Query: 15 LVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY- 71
L+ V+LD P W + ++ + +L FLNA L+LN NQV IA+ ++Y
Sbjct: 24 LLTVVLDVTPQSWYKIRNQITIQEVAKSLLVFLNAHLSLNNSNQVAFIASTPQGSKFLYP 83
Query: 72 -------DSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDEQLGK----------QEP 112
+ SS N N ++L+ + +F DE + + Q
Sbjct: 84 NPEKNYDEVSSKKNGEGSNLNKADSTSSLVGDGMYRQFRIVDEAVLEKLNEIFADISQNV 143
Query: 113 EGRIACSLLSGSLSMALCYIQRVFR----------------------------------- 137
+ + S LSG+LS+AL Y R+
Sbjct: 144 DKSRSNSTLSGALSLALTYTNRMLNLDSSISTTTASAINTTTNANSNKTSSSGTTSNSMS 203
Query: 138 ------SGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQ 186
+ L + R + D +Y+ IMN F+AQ+ VPID LG ++S++LQ
Sbjct: 204 TGGTNTTSLTSMRSRILIVSSNDDNDIKYIPIMNTTFAAQKMKVPIDVAKLGERDSSYLQ 263
Query: 187 QASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDM 246
QAS T GV+ +GL Q L T F + R+ + LP V++RASCF ++++
Sbjct: 264 QASDATNGVYLHIANPEGLIQTLSTAFFIEPSIRSLIILPTNSNVNYRASCFITGKSVNL 323
Query: 247 GYICSVCLSIYCKHLK--KCSTCGSVFGQ---AQTQSDEPSATNRKRK 289
G++CSVCL I K KC TCGS F + AQ + +KRK
Sbjct: 324 GFVCSVCLCIMSIIPKEGKCPTCGSKFDEKILAQLRRGVVIPVKKKRK 371
>sp|Q6CD24|TFB4_YARLI RNA polymerase II transcription factor B subunit 4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB4 PE=3 SV=1
Length = 340
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 142/301 (47%), Gaps = 40/301 (13%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+ +++D + W S +S S+ + +L F+NA L L+ N V VI +
Sbjct: 21 DTPSLLSIIIDAHVPSWEEIKSQISISEAVASILVFINAHLALHNSNSVNVIGYNASGAR 80
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ------------------ 110
+Y S G +S + ++ + KD + +Q
Sbjct: 81 ILYPPKS-GVESTRSKEREERSESVSDGEQAPSKKDHSMYRQFKTVDEVVQTELWNMLNH 139
Query: 111 ---EPEGRIACSLLSGSLSMALCYIQR-VF------RSGLLHPQPRGSPDGPEQYVAIMN 160
E + S +SG+LS+AL +I + VF R+ +L G + QY+ MN
Sbjct: 140 TNYVEEEKQHNSAISGALSLALGFINKHVFVDESRMRARILL-LTVGHKNETIQYIPTMN 198
Query: 161 AIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLD-----GLFQYLLTIFG 214
IF+AQ+ +P+D C LG + FLQQA T G++ + + GL QYLL+ F
Sbjct: 199 CIFAAQKLKIPVDVCKLGPGSDQVFLQQACDSTHGIYMDISEKNSKTPKGLVQYLLSGFI 258
Query: 215 TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGSVFG 272
+D R + LP VDFRA+CF K +D+GY+CSVCL I + ++C TC + +
Sbjct: 259 SDPSLRPHIVLPTQSNVDFRAACFLTKQVVDIGYVCSVCLCIMSQIPSNRRCPTCDTTYS 318
Query: 273 Q 273
+
Sbjct: 319 E 319
>sp|Q6CVX9|TFB4_KLULA RNA polymerase II transcription factor B subunit 4 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB4 PE=3 SV=1
Length = 337
Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 134/300 (44%), Gaps = 49/300 (16%)
Query: 11 DDVSLVVVLLDTNPFFW--------------SSSSLSFSQFLTHVLAFLNAILTLNQLNQ 56
D SL+ V++DT+ W SS + L ++ FLNA L N NQ
Sbjct: 21 DTPSLLTVVVDTSIHSWVQLTKQQSGSGSEGSSGEKQLIEALKSIVVFLNAHLAFNSGNQ 80
Query: 57 VVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE-------QLGK 109
V +IA Y+Y S+ + PS+ F N DE +L K
Sbjct: 81 VCLIAAHSEGMKYLYPSADSK---------PSMSMVSSDMYRGFRNVDEIVVEQWYRLFK 131
Query: 110 QEPEGRIAC----SLLSGSLSMALCYIQRVF--------RSGLLHPQPRGSPDGPE---Q 154
+E EG+ + S LSG++S AL Y+ R+ RS LL G+ G + Q
Sbjct: 132 EELEGQESKVSMKSSLSGAMSSALTYVNRILKENENTSLRSRLLVITC-GTSQGKDEIFQ 190
Query: 155 YVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 213
Y+ IMN IFSA + ID +G S FLQQA+ T GV+ + GL QYL T
Sbjct: 191 YIPIMNCIFSATKMKCSIDVVKIGGGIESTFLQQATDATSGVYLHVENTRGLIQYLSTAM 250
Query: 214 GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVF 271
D RN + P VDFR SCF + +G++CSVCL + +KC C S F
Sbjct: 251 FIDPSLRNVIIKPNQGSVDFRTSCFLTGKVVAVGFVCSVCLCVLSVIPPGQKCPACDSPF 310
>sp|Q9LY84|GDL76_ARATH GDSL esterase/lipase At5g14450 OS=Arabidopsis thaliana GN=At5g14450
PE=2 SV=1
Length = 389
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 122 SGSLSMALCYIQRVFRSGLLH-PQPRGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 180
+G +S A I+ + G H P R S DG + F A+R +P S YL +
Sbjct: 52 TGGISAAFEPIRDPYGQGFFHRPTGRDS-DGR------LTIDFIAERLGLPYLSAYLNSL 104
Query: 181 NSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 225
S F A++ TGG + +Q + +FQY ++ F D+ F Q
Sbjct: 105 GSNFRHGANFATGGSTIR-RQNETIFQYGISPFSLDMQIAQFDQF 148
>sp|Q9JJR6|CK016_MOUSE Uncharacterized protein C11orf16 homolog OS=Mus musculus
GN=D7h11orf16 PE=2 SV=2
Length = 402
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 216 DLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSV 270
D HS + L +P + RA C H++ +D ++C CLS C L+ S+C V
Sbjct: 232 DCHS-SCLWVPHCSQLGPRAGCTTHRHPLDSSFLCPPCLSCACCQLQCQSSCPLV 285
>sp|Q6DI48|DLLA_DANRE Delta-like protein A OS=Danio rerio GN=dla PE=1 SV=1
Length = 772
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 97 LEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRGSPDGPEQYV 156
L+EF+NK + +G C + S C + FR L H QP SP+ P Y
Sbjct: 30 LQEFLNK------KGVQGNKNCCKGGLTTSYQQCECKTFFRICLKHYQPNASPEPPCTYG 83
Query: 157 AIMNAIFSAQRSMVP 171
+ + + VP
Sbjct: 84 GTVTPVLGSNSFQVP 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,508,612
Number of Sequences: 539616
Number of extensions: 4396987
Number of successful extensions: 9128
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9077
Number of HSP's gapped (non-prelim): 17
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)