Query 022678
Match_columns 293
No_of_seqs 117 out of 354
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x5n_A SPRPN10, 26S proteasome 99.3 1.6E-10 5.4E-15 100.0 16.1 167 14-210 3-182 (192)
2 4b4t_W RPN10, 26S proteasome r 99.2 6.5E-10 2.2E-14 101.0 15.3 167 15-211 5-187 (268)
3 3ibs_A Conserved hypothetical 99.0 1.2E-08 4E-13 88.0 15.3 167 8-211 6-207 (218)
4 1shu_X Anthrax toxin receptor 98.6 1.8E-06 6E-11 72.0 16.6 164 13-210 6-175 (182)
5 1q0p_A Complement factor B; VO 98.4 2.7E-06 9.1E-11 73.1 11.3 178 12-211 14-214 (223)
6 4fx5_A VON willebrand factor t 98.3 2.3E-05 8E-10 76.1 17.3 168 13-211 77-252 (464)
7 2b2x_A Integrin alpha-1; compu 98.2 8.1E-06 2.8E-10 70.8 11.5 163 13-209 22-204 (223)
8 3n2n_F Anthrax toxin receptor 98.2 2E-05 6.7E-10 65.7 12.5 165 13-209 7-177 (185)
9 1n3y_A Integrin alpha-X; alpha 98.2 6.2E-07 2.1E-11 76.0 2.9 167 12-208 8-185 (198)
10 1atz_A VON willebrand factor; 98.2 4.8E-05 1.6E-09 64.0 14.2 166 13-208 5-176 (189)
11 4hqf_A Thrombospondin-related 98.1 4.3E-05 1.5E-09 68.7 14.5 172 13-209 21-202 (281)
12 1rrk_A Complement factor B; BB 98.1 3.3E-05 1.1E-09 74.6 14.5 178 15-213 3-202 (497)
13 1v7p_C Integrin alpha-2; snake 98.1 4.6E-05 1.6E-09 64.8 13.0 168 13-209 6-188 (200)
14 1pt6_A Integrin alpha-1; cell 98.1 1.6E-05 5.5E-10 68.4 10.0 162 13-208 7-188 (213)
15 2odp_A Complement C2; C3/C5 co 98.1 3.2E-05 1.1E-09 75.0 12.8 181 11-212 7-209 (509)
16 1ijb_A VON willebrand factor; 98.0 0.00032 1.1E-08 59.8 16.4 169 13-210 13-189 (202)
17 3hrz_D Complement factor B; se 97.9 8.9E-05 3.1E-09 75.1 13.2 177 13-211 243-442 (741)
18 4hqo_A Sporozoite surface prot 97.9 0.00018 6.1E-09 64.3 13.8 173 13-210 18-200 (266)
19 1jey_B KU80; double-strand DNA 97.9 0.00015 5.2E-09 72.0 13.7 171 14-201 8-229 (565)
20 1mf7_A Integrin alpha M; cell 97.8 1.9E-05 6.5E-10 66.7 5.1 161 13-207 5-180 (194)
21 2x31_A Magnesium-chelatase 60 97.6 6.6E-07 2.3E-11 75.4 -6.3 155 12-201 4-173 (189)
22 2xgg_A Microneme protein 2; A/ 97.4 0.0014 4.6E-08 54.6 10.6 149 13-187 17-170 (178)
23 3zqk_A VON willebrand factor; 97.2 0.0075 2.6E-07 51.0 13.8 166 10-211 18-188 (199)
24 1jey_A KU70; double-strand DNA 96.8 0.014 4.8E-07 58.4 14.0 144 14-180 36-208 (609)
25 1mjn_A Integrin alpha-L; rossm 96.3 0.0018 6.2E-08 53.9 2.7 151 14-205 3-168 (179)
26 3k6s_A Integrin alpha-X; cell 96.2 0.0035 1.2E-07 66.8 5.3 159 13-205 130-303 (1095)
27 3rag_A Uncharacterized protein 95.9 0.016 5.6E-07 51.4 6.9 48 160-208 29-82 (242)
28 3rag_A Uncharacterized protein 95.3 0.048 1.7E-06 48.3 7.9 98 10-138 131-231 (242)
29 6rxn_A Rubredoxin; electron tr 92.7 0.061 2.1E-06 35.3 2.3 24 247-270 4-39 (46)
30 3pwf_A Rubrerythrin; non heme 92.1 0.084 2.9E-06 44.3 3.0 26 245-270 136-162 (170)
31 2lcq_A Putative toxin VAPC6; P 91.7 0.11 3.8E-06 42.9 3.3 34 242-275 127-162 (165)
32 2v3b_B Rubredoxin 2, rubredoxi 90.1 0.16 5.6E-06 34.5 2.4 24 247-270 3-45 (55)
33 1lko_A Rubrerythrin all-iron(I 90.0 0.12 4.2E-06 44.0 2.0 24 247-270 155-180 (191)
34 2kn9_A Rubredoxin; metalloprot 89.6 0.18 6E-06 37.1 2.4 24 246-269 26-68 (81)
35 4rxn_A Rubredoxin; electron tr 88.2 0.25 8.7E-06 33.5 2.2 24 247-270 3-45 (54)
36 1yk4_A Rubredoxin, RD; electro 88.0 0.24 8.3E-06 33.3 2.0 24 247-270 2-44 (52)
37 1yuz_A Nigerythrin; rubrythrin 87.8 0.26 8.9E-06 42.3 2.6 25 246-270 170-195 (202)
38 1dx8_A Rubredoxin; electron tr 86.9 0.35 1.2E-05 34.6 2.4 25 246-270 6-49 (70)
39 1s24_A Rubredoxin 2; electron 86.8 0.33 1.1E-05 36.2 2.3 25 245-269 33-76 (87)
40 1e8j_A Rubredoxin; iron-sulfur 86.6 0.4 1.4E-05 32.2 2.4 24 247-270 3-45 (52)
41 1pcx_A Protein transport prote 85.3 13 0.00043 38.3 14.1 42 160-201 369-412 (810)
42 1yvr_A RO autoantigen, 60-kDa 85.0 19 0.00065 34.8 14.7 51 11-64 366-417 (538)
43 3j21_g 50S ribosomal protein L 79.4 1.7 5.9E-05 29.0 3.2 29 246-275 13-41 (51)
44 1z60_A TFIIH basal transcripti 77.9 1 3.5E-05 31.0 1.8 33 236-268 17-59 (59)
45 1m2v_B SEC24, protein transpor 77.9 21 0.00072 37.3 12.6 41 160-200 485-527 (926)
46 3mjh_B Early endosome antigen 76.6 1.1 3.8E-05 27.3 1.6 10 247-256 5-14 (34)
47 2gmg_A Hypothetical protein PF 74.9 1.6 5.3E-05 33.6 2.3 31 245-275 65-98 (105)
48 1vd4_A Transcription initiatio 72.5 2.6 8.9E-05 28.0 2.8 31 245-275 12-53 (62)
49 2lv2_A Insulinoma-associated p 72.1 1.8 6.2E-05 31.5 2.0 29 247-275 28-70 (85)
50 2nvo_A RO sixty-related protei 70.7 25 0.00086 34.1 10.5 39 159-197 476-535 (535)
51 1twf_L ABC10-alpha, DNA-direct 70.4 4.4 0.00015 28.7 3.7 33 243-275 24-59 (70)
52 4gzn_C ZFP-57, zinc finger pro 69.2 2.4 8.2E-05 28.7 2.0 29 247-275 4-46 (60)
53 3efo_B SEC24 related gene fami 68.6 1.1E+02 0.0036 31.2 19.3 42 160-201 358-401 (770)
54 4ayb_P DNA-directed RNA polyme 68.2 2.7 9.2E-05 27.5 1.9 31 248-278 4-40 (48)
55 1pft_A TFIIB, PFTFIIBN; N-term 68.1 1.4 4.9E-05 28.7 0.6 30 246-275 4-38 (50)
56 3eh2_A Protein transport prote 67.2 1.1E+02 0.0039 31.0 18.6 42 160-201 354-397 (766)
57 2eps_A POZ-, at HOOK-, and zin 67.1 5.6 0.00019 25.2 3.5 30 244-273 9-53 (54)
58 1x4s_A Protein FON, zinc finge 67.0 2 6.7E-05 29.6 1.1 27 235-261 12-40 (59)
59 3uk3_C Zinc finger protein 217 66.9 2 7E-05 27.3 1.2 29 247-275 4-46 (57)
60 2yqq_A Zinc finger HIT domain- 66.0 2.1 7.2E-05 29.1 1.1 23 236-261 14-37 (56)
61 2ww8_A RRGA, cell WALL surface 64.7 8.2 0.00028 40.2 5.8 54 10-64 221-277 (893)
62 1bbo_A Human enhancer-binding 62.5 2.8 9.5E-05 26.7 1.2 28 248-275 2-43 (57)
63 1x6e_A Zinc finger protein 24; 61.7 4.1 0.00014 27.5 2.1 30 246-275 13-56 (72)
64 1x5w_A Zinc finger protein 64, 60.8 4.2 0.00014 27.2 2.0 30 246-275 8-51 (70)
65 3eh1_A Protein transport prote 60.5 1.5E+02 0.0051 30.1 19.9 177 12-201 159-376 (751)
66 2apo_B Ribosome biogenesis pro 59.6 6.7 0.00023 27.0 2.8 26 248-275 7-32 (60)
67 2d9g_A YY1-associated factor 2 58.5 11 0.00038 25.1 3.7 34 245-278 9-42 (53)
68 2adr_A ADR1; transcription reg 57.9 3.5 0.00012 26.5 1.1 28 248-275 3-44 (60)
69 1wg2_A Zinc finger (AN1-like) 54.6 5.9 0.0002 27.6 1.8 40 235-275 16-58 (64)
70 2epq_A POZ-, at HOOK-, and zin 53.8 6.7 0.00023 23.6 1.9 12 247-258 10-21 (45)
71 2lce_A B-cell lymphoma 6 prote 52.1 4.8 0.00016 27.2 1.1 30 246-275 16-59 (74)
72 2gqj_A Zinc finger protein KIA 52.0 2.4 8E-05 30.9 -0.6 30 246-275 23-68 (98)
73 2drp_A Protein (tramtrack DNA- 51.7 7.5 0.00025 25.4 2.0 30 246-275 9-54 (66)
74 1wfh_A Zinc finger (AN1-like) 51.7 7 0.00024 27.2 1.8 40 235-275 16-58 (64)
75 2ctd_A Zinc finger protein 512 51.1 9.3 0.00032 27.8 2.6 30 246-275 33-76 (96)
76 3h0g_L DNA-directed RNA polyme 50.7 10 0.00036 26.2 2.6 33 245-277 19-54 (63)
77 2jny_A Uncharacterized BCR; st 50.6 3.7 0.00013 28.9 0.3 28 248-275 11-42 (67)
78 1wff_A Riken cDNA 2810002D23 p 50.5 12 0.00042 27.5 3.1 42 233-275 24-69 (85)
79 1nj3_A NPL4; NZF domain, rubre 50.4 14 0.00048 21.4 2.8 26 246-271 5-30 (31)
80 1wfp_A Zinc finger (AN1-like) 49.8 7.7 0.00026 27.8 1.8 42 233-275 24-68 (74)
81 2js4_A UPF0434 protein BB2007; 49.3 4.2 0.00014 28.8 0.4 28 248-275 9-40 (70)
82 3b08_B Ranbp-type and C3HC4-ty 49.3 16 0.00054 25.4 3.3 30 246-275 7-36 (64)
83 2kdx_A HYPA, hydrogenase/ureas 49.2 11 0.00039 28.9 3.0 29 244-272 70-101 (119)
84 2ct1_A Transcriptional repress 49.2 8.6 0.00029 26.1 2.1 30 246-275 14-59 (77)
85 1llm_C Chimera of ZIF23-GCN4; 48.7 8.4 0.00029 26.9 2.0 27 248-274 4-44 (88)
86 2kmk_A Zinc finger protein GFI 48.6 8.6 0.00029 26.0 2.0 29 247-275 29-71 (82)
87 2nut_A Protein transport prote 48.1 2.3E+02 0.008 28.6 19.4 55 160-214 337-395 (769)
88 1a1h_A QGSR zinc finger peptid 47.5 9.1 0.00031 26.5 2.0 30 246-275 33-76 (90)
89 2ctu_A Zinc finger protein 483 46.8 6.3 0.00022 26.0 1.0 31 245-275 16-53 (73)
90 3irb_A Uncharacterized protein 46.4 8.5 0.00029 30.9 1.9 26 245-270 45-70 (145)
91 2d9h_A Zinc finger protein 692 46.4 9.7 0.00033 25.8 2.0 30 246-275 6-52 (78)
92 2egp_A Tripartite motif-contai 46.3 15 0.00052 25.2 3.1 15 261-275 53-67 (79)
93 2dmd_A Zinc finger protein 64, 45.8 10 0.00034 26.7 2.0 30 246-275 35-78 (96)
94 3a9j_C Mitogen-activated prote 45.8 17 0.00058 21.5 2.7 25 246-270 7-31 (34)
95 1vq8_Z 50S ribosomal protein L 45.7 5.6 0.00019 29.1 0.6 33 246-278 26-62 (83)
96 2cot_A Zinc finger protein 435 44.8 7.1 0.00024 26.5 1.0 30 246-275 17-60 (77)
97 1qxf_A GR2, 30S ribosomal prot 44.6 9.8 0.00033 26.6 1.7 27 249-275 9-40 (66)
98 2lt7_A Transcriptional regulat 44.2 9.8 0.00033 29.6 1.9 14 261-274 78-91 (133)
99 2dlq_A GLI-kruppel family memb 43.7 14 0.00048 27.0 2.7 31 245-275 64-108 (124)
100 2ect_A Ring finger protein 126 43.7 14 0.00049 25.4 2.5 31 248-278 39-69 (78)
101 1f2i_G Fusion of N-terminal 17 43.0 11 0.00039 25.0 1.9 30 246-275 18-63 (73)
102 2ecv_A Tripartite motif-contai 42.6 15 0.00052 25.4 2.6 17 261-277 59-75 (85)
103 2wbt_A B-129; zinc finger; 2.7 42.4 16 0.00054 27.4 2.8 30 246-275 73-114 (129)
104 2zjr_Z 50S ribosomal protein L 41.6 12 0.00042 25.5 1.8 21 248-270 31-52 (60)
105 3mkr_B Coatomer subunit alpha; 41.4 11 0.00038 34.4 2.0 29 247-275 278-308 (320)
106 2lk0_A RNA-binding protein 5; 41.4 21 0.00071 21.0 2.6 25 246-270 4-28 (32)
107 2yt9_A Zinc finger-containing 41.2 17 0.00057 25.4 2.6 30 246-275 34-79 (95)
108 2j9u_B VPS36, vacuolar protein 41.2 17 0.00057 26.1 2.5 30 243-272 13-51 (76)
109 2epr_A POZ-, at HOOK-, and zin 40.9 18 0.00062 21.9 2.5 13 246-258 11-23 (48)
110 2aus_D NOP10, ribosome biogene 40.8 16 0.00056 25.0 2.3 26 248-275 6-31 (60)
111 2ko5_A Ring finger protein Z; 40.5 4.1 0.00014 30.7 -0.8 36 247-282 47-82 (99)
112 3nw0_A Non-structural maintena 40.3 23 0.00079 30.7 3.8 41 235-275 181-231 (238)
113 2csh_A Zinc finger protein 297 40.1 14 0.00046 26.8 2.0 28 247-274 37-78 (110)
114 2ct0_A Non-SMC element 1 homol 40.0 38 0.0013 23.9 4.3 41 235-275 16-66 (74)
115 1wii_A Hypothetical UPF0222 pr 40.0 5.8 0.0002 29.2 -0.1 32 244-275 20-61 (85)
116 1wfl_A Zinc finger protein 216 39.8 13 0.00043 26.6 1.7 41 234-275 25-68 (74)
117 2ee8_A Protein ODD-skipped-rel 39.8 14 0.00046 26.5 2.0 30 246-275 44-87 (106)
118 2kre_A Ubiquitin conjugation f 39.6 12 0.0004 28.0 1.6 18 261-278 63-80 (100)
119 2jrp_A Putative cytoplasmic pr 39.6 11 0.00039 27.4 1.4 24 247-271 18-41 (81)
120 2crc_A Ubiquitin conjugating e 38.9 21 0.00071 23.7 2.5 31 245-275 8-38 (52)
121 3mv2_A Coatomer subunit alpha; 38.7 13 0.00044 34.1 2.0 27 247-273 287-315 (325)
122 3f2b_A DNA-directed DNA polyme 38.6 13 0.00045 39.3 2.3 38 235-272 486-538 (1041)
123 2hf1_A Tetraacyldisaccharide-1 37.7 9.1 0.00031 26.9 0.6 28 248-275 9-40 (68)
124 2dlk_A Novel protein; ZF-C2H2 37.4 23 0.00078 23.7 2.8 26 246-271 37-78 (79)
125 2k4x_A 30S ribosomal protein S 37.3 13 0.00046 24.8 1.4 31 242-272 13-47 (55)
126 2pk7_A Uncharacterized protein 37.1 10 0.00035 26.7 0.9 28 248-275 9-40 (69)
127 2jr6_A UPF0434 protein NMA0874 36.7 9.5 0.00032 26.8 0.6 28 248-275 9-40 (68)
128 2c2l_A CHIP, carboxy terminus 36.7 12 0.00041 32.2 1.4 16 262-277 244-259 (281)
129 3j20_W 30S ribosomal protein S 35.8 16 0.00055 25.3 1.6 27 249-275 17-48 (63)
130 2yu4_A E3 SUMO-protein ligase 35.7 8.4 0.00029 28.2 0.2 13 262-274 49-64 (94)
131 2gnr_A Conserved hypothetical 35.3 16 0.00055 29.3 1.9 26 245-270 45-70 (145)
132 2kr4_A Ubiquitin conjugation f 35.0 12 0.00039 27.0 0.9 18 261-278 48-65 (85)
133 3jyw_9 60S ribosomal protein L 34.8 17 0.00059 25.8 1.7 33 246-278 25-61 (72)
134 1gh9_A 8.3 kDa protein (gene M 34.8 8.1 0.00028 27.4 -0.0 27 247-275 4-34 (71)
135 3cc2_Z 50S ribosomal protein L 34.3 13 0.00043 29.0 1.0 33 246-278 59-95 (116)
136 2eq0_A Zinc finger protein 347 34.0 29 0.00098 20.5 2.6 13 246-258 11-23 (46)
137 3iz6_X 40S ribosomal protein S 33.9 26 0.00088 25.8 2.5 27 249-275 38-69 (86)
138 2jvx_A NF-kappa-B essential mo 33.9 15 0.00052 21.2 1.1 9 248-256 4-12 (28)
139 1e4u_A Transcriptional repress 33.9 37 0.0013 23.9 3.5 15 261-275 50-64 (78)
140 1x6h_A Transcriptional repress 33.7 20 0.0007 24.3 2.0 30 246-275 14-61 (86)
141 3axs_A Probable N(2),N(2)-dime 33.5 20 0.00068 33.5 2.5 30 245-274 240-276 (392)
142 2ytk_A Zinc finger protein 347 33.3 30 0.001 20.4 2.6 13 246-258 11-23 (46)
143 3gj3_B Nuclear pore complex pr 33.1 36 0.0012 20.3 2.7 26 245-270 5-30 (33)
144 2ema_A Zinc finger protein 347 32.8 30 0.001 20.4 2.5 12 247-258 12-23 (46)
145 3fcs_B Integrin beta-3; beta p 32.3 3.1E+02 0.011 27.5 11.1 55 158-213 292-348 (690)
146 2el4_A Zinc finger protein 268 32.2 30 0.001 20.4 2.4 12 247-258 12-23 (46)
147 2k1p_A Zinc finger RAN-binding 31.8 25 0.00087 20.8 1.9 25 246-270 5-29 (33)
148 2emh_A Zinc finger protein 484 31.6 34 0.0012 20.2 2.6 13 246-258 11-23 (46)
149 3u5c_b RP61, YS20, 40S ribosom 31.2 27 0.00092 25.4 2.3 27 249-275 36-67 (82)
150 1dl6_A Transcription factor II 31.1 16 0.00054 24.6 1.0 27 249-275 13-44 (58)
151 2ytj_A Zinc finger protein 484 31.0 34 0.0012 20.2 2.5 12 247-258 12-23 (46)
152 2epw_A Zinc finger protein 268 30.0 36 0.0012 20.0 2.5 12 247-258 12-23 (46)
153 2ep2_A Zinc finger protein 484 30.0 35 0.0012 20.1 2.4 12 247-258 12-23 (46)
154 2eml_A Zinc finger protein 28 29.8 37 0.0013 20.0 2.5 12 247-258 12-23 (46)
155 2m0e_A Zinc finger and BTB dom 29.7 22 0.00075 18.1 1.3 14 262-275 3-16 (29)
156 3a43_A HYPD, hydrogenase nicke 29.6 25 0.00085 27.9 2.1 28 245-272 68-118 (139)
157 2ysl_A Tripartite motif-contai 29.4 35 0.0012 22.9 2.6 14 261-274 57-70 (73)
158 2yu8_A Zinc finger protein 347 29.3 37 0.0013 20.0 2.5 12 247-258 12-23 (46)
159 2emf_A Zinc finger protein 484 29.2 38 0.0013 20.0 2.5 12 247-258 12-23 (46)
160 2emy_A Zinc finger protein 268 29.0 39 0.0013 19.9 2.6 12 247-258 12-23 (46)
161 2en8_A Zinc finger protein 224 28.9 39 0.0013 19.9 2.5 12 247-258 12-23 (46)
162 2em5_A ZFP-95, zinc finger pro 28.7 39 0.0013 19.9 2.5 12 247-258 12-23 (46)
163 1ltl_A DNA replication initiat 28.6 23 0.00078 31.3 1.9 28 243-270 130-165 (279)
164 3gj5_B Nuclear pore complex pr 28.6 48 0.0017 19.9 2.7 26 245-270 5-30 (34)
165 2em9_A Zinc finger protein 224 28.4 39 0.0013 19.8 2.5 12 247-258 12-23 (46)
166 2eme_A Zinc finger protein 473 28.3 41 0.0014 19.7 2.5 12 247-258 12-23 (46)
167 2ecw_A Tripartite motif-contai 28.3 20 0.00068 24.7 1.2 15 261-275 59-73 (85)
168 1bi6_H Bromelain inhibitor VI; 28.2 19 0.00064 21.9 0.8 19 255-273 9-27 (41)
169 2ysp_A Zinc finger protein 224 27.8 38 0.0013 19.9 2.3 12 247-258 12-23 (46)
170 2el6_A Zinc finger protein 268 27.7 41 0.0014 19.8 2.5 12 247-258 12-23 (46)
171 2ene_A Zinc finger protein 347 27.6 41 0.0014 19.8 2.5 12 247-258 12-23 (46)
172 2emp_A Zinc finger protein 347 27.6 42 0.0014 19.7 2.5 12 247-258 12-23 (46)
173 2xzm_6 RPS27E; ribosome, trans 27.6 24 0.00082 25.6 1.4 27 249-275 34-65 (81)
174 2em7_A Zinc finger protein 224 27.5 42 0.0014 19.7 2.5 12 247-258 12-23 (46)
175 2eoo_A ZFP-95, zinc finger pro 27.3 42 0.0014 19.8 2.5 12 247-258 12-23 (46)
176 2ytg_A ZFP-95, zinc finger pro 27.3 43 0.0015 19.7 2.5 12 247-258 12-23 (46)
177 1znf_A 31ST zinc finger from X 27.2 22 0.00077 18.0 1.0 13 263-275 3-15 (27)
178 2emm_A ZFP-95, zinc finger pro 27.2 43 0.0015 19.6 2.5 13 246-258 11-23 (46)
179 2eoe_A Zinc finger protein 347 27.0 31 0.0011 20.3 1.8 12 247-258 12-23 (46)
180 2enc_A Zinc finger protein 224 27.0 45 0.0015 19.6 2.6 12 247-258 12-23 (46)
181 1wgm_A Ubiquitin conjugation f 26.9 23 0.0008 26.1 1.4 17 261-277 57-73 (98)
182 2ep0_A Zinc finger protein 28 26.9 44 0.0015 19.6 2.5 12 247-258 12-23 (46)
183 2ytn_A Zinc finger protein 347 26.8 30 0.001 20.5 1.7 10 248-257 13-22 (46)
184 2con_A RUH-035 protein, NIN on 26.8 52 0.0018 23.7 3.1 29 242-270 10-39 (79)
185 2k0a_A PRE-mRNA-splicing facto 26.6 21 0.00072 27.2 1.0 16 238-253 12-28 (109)
186 2em8_A Zinc finger protein 224 26.5 45 0.0015 19.7 2.5 12 247-258 12-23 (46)
187 2ytd_A Zinc finger protein 473 26.3 45 0.0015 19.6 2.5 12 247-258 12-23 (46)
188 2ea6_A Ring finger protein 4; 26.2 19 0.00066 23.8 0.7 12 261-272 56-67 (69)
189 2i13_A AART; DNA binding, zinc 26.1 30 0.001 27.7 2.0 30 246-275 132-175 (190)
190 2kvh_A Zinc finger and BTB dom 26.0 28 0.00097 17.7 1.3 10 248-257 4-13 (27)
191 2en1_A Zinc finger protein 224 25.9 44 0.0015 19.6 2.4 12 247-258 12-23 (46)
192 1rmd_A RAG1; V(D)J recombinati 25.6 29 0.00099 25.9 1.7 15 261-275 58-72 (116)
193 3lrq_A E3 ubiquitin-protein li 25.5 16 0.00054 26.9 0.2 30 246-275 34-72 (100)
194 2i5o_A DNA polymerase ETA; zin 25.4 32 0.0011 21.4 1.6 12 246-257 8-19 (39)
195 1ffk_W Ribosomal protein L37AE 25.3 18 0.00063 25.7 0.5 32 247-278 27-62 (73)
196 2en6_A Zinc finger protein 268 24.9 48 0.0016 19.5 2.4 12 247-258 12-23 (46)
197 2lvu_A Zinc finger and BTB dom 30.8 15 0.00052 18.6 0.0 14 262-275 3-16 (26)
198 2yso_A ZFP-95, zinc finger pro 24.9 50 0.0017 19.4 2.5 12 247-258 12-23 (46)
199 1klr_A Zinc finger Y-chromosom 24.8 30 0.001 17.7 1.2 14 262-275 3-16 (30)
200 1ard_A Yeast transcription fac 24.7 27 0.00094 17.8 1.1 14 262-275 3-16 (29)
201 1paa_A Yeast transcription fac 24.6 29 0.001 17.9 1.2 14 262-275 3-16 (30)
202 2d9k_A FLN29 gene product; zin 24.6 24 0.00083 24.3 1.0 30 246-275 16-57 (75)
203 1ef4_A Subunit N, DNA-directed 24.4 27 0.00091 23.5 1.1 13 260-272 2-14 (55)
204 2m0f_A Zinc finger and BTB dom 24.3 32 0.0011 17.4 1.4 9 248-256 3-11 (29)
205 1twf_J DNA-directed RNA polyme 24.3 26 0.0009 24.7 1.1 14 260-273 3-16 (70)
206 2eod_A TNF receptor-associated 24.3 31 0.0011 22.4 1.5 30 246-275 9-51 (66)
207 2eop_A Zinc finger protein 268 23.9 37 0.0013 20.0 1.7 10 248-257 13-22 (46)
208 1x4v_A Hypothetical protein LO 23.7 44 0.0015 23.0 2.2 25 235-259 13-39 (63)
209 1rik_A E6APC1 peptide; E6-bind 23.7 33 0.0011 17.5 1.3 10 264-273 5-14 (29)
210 3q7r_A Transcriptional regulat 23.6 1.3E+02 0.0044 23.0 4.9 43 5-47 65-118 (121)
211 2m0d_A Zinc finger and BTB dom 23.5 35 0.0012 17.4 1.4 10 248-257 4-13 (30)
212 2emx_A Zinc finger protein 268 23.4 54 0.0018 19.0 2.4 12 247-258 10-21 (44)
213 2kvf_A Zinc finger and BTB dom 23.4 35 0.0012 17.4 1.4 9 248-256 4-12 (28)
214 2jp9_A Wilms tumor 1; DNA bind 23.3 38 0.0013 24.4 2.0 30 246-275 65-110 (119)
215 2kvg_A Zinc finger and BTB dom 23.2 33 0.0011 17.6 1.2 10 248-257 4-13 (27)
216 1wys_A Riken cDNA 2310008M20 p 23.2 49 0.0017 23.6 2.4 26 235-260 15-42 (75)
217 2epz_A Zinc finger protein 28 23.1 39 0.0013 19.9 1.7 10 263-272 14-23 (46)
218 1x4w_A Hypothetical protein FL 23.0 25 0.00086 24.6 0.8 40 235-275 16-61 (67)
219 1wjp_A Zinc finger protein 295 23.0 20 0.00067 25.9 0.3 28 247-274 42-82 (107)
220 2emk_A Zinc finger protein 28 22.8 39 0.0013 19.9 1.7 10 248-257 13-22 (46)
221 2eov_A Zinc finger protein 484 22.8 38 0.0013 19.9 1.6 11 263-273 14-24 (46)
222 2csy_A Zinc finger protein 183 22.6 30 0.001 24.0 1.2 21 252-272 32-60 (81)
223 2ayj_A 50S ribosomal protein L 22.5 83 0.0028 21.1 3.3 24 247-270 19-42 (56)
224 1wfe_A Riken cDNA 2310008M20 p 22.4 39 0.0013 24.7 1.8 25 235-259 26-52 (86)
225 4a17_Y RPL37A, 60S ribosomal p 22.2 20 0.00068 27.2 0.2 33 246-278 35-71 (103)
226 2ely_A Zinc finger protein 224 22.0 41 0.0014 19.9 1.6 11 263-273 14-24 (46)
227 2elz_A Zinc finger protein 224 21.8 42 0.0014 19.8 1.7 10 263-272 14-23 (46)
228 2ebt_A Krueppel-like factor 5; 21.7 61 0.0021 22.4 2.8 30 246-275 44-89 (100)
229 3j20_Y 30S ribosomal protein S 21.7 49 0.0017 21.5 2.0 30 242-271 14-47 (50)
230 3v2d_5 50S ribosomal protein L 21.6 52 0.0018 22.3 2.2 22 248-270 31-52 (60)
231 2ytq_A Zinc finger protein 268 21.5 42 0.0014 19.8 1.6 10 263-272 14-23 (46)
232 2els_A Zinc finger protein 406 21.5 40 0.0014 18.5 1.4 13 246-258 8-20 (36)
233 2eoq_A Zinc finger protein 224 21.4 39 0.0013 19.9 1.5 10 248-257 13-22 (46)
234 4ayb_N DNA-directed RNA polyme 21.4 33 0.0011 23.9 1.1 13 260-272 3-15 (66)
235 2elx_A Zinc finger protein 406 21.4 39 0.0013 18.2 1.4 11 247-257 7-17 (35)
236 2ep4_A Ring finger protein 24; 21.2 77 0.0026 21.2 3.1 23 253-275 36-66 (74)
237 2em0_A Zinc finger protein 224 21.2 42 0.0014 19.7 1.6 11 263-273 14-24 (46)
238 3iz5_m 60S ribosomal protein L 20.9 18 0.00063 26.9 -0.3 33 246-278 35-71 (92)
239 2ytm_A Zinc finger protein 28 20.9 37 0.0013 20.1 1.2 10 263-272 14-23 (46)
240 3j21_i 50S ribosomal protein L 20.8 15 0.00051 26.9 -0.8 32 247-278 35-70 (83)
241 2eq4_A Zinc finger protein 224 20.7 44 0.0015 19.6 1.6 9 248-256 13-21 (46)
242 2jne_A Hypothetical protein YF 20.7 33 0.0011 25.8 1.1 33 239-272 38-72 (101)
243 2fiy_A Protein FDHE homolog; F 20.7 48 0.0016 30.0 2.4 23 248-270 209-231 (309)
244 1srk_A Zinc finger protein ZFP 20.6 42 0.0014 18.2 1.4 12 247-258 7-18 (35)
245 2elt_A Zinc finger protein 406 20.2 42 0.0014 18.3 1.3 11 247-257 9-19 (36)
246 3ga8_A HTH-type transcriptiona 20.2 38 0.0013 23.8 1.3 13 246-258 35-47 (78)
247 2em2_A Zinc finger protein 28 20.1 70 0.0024 18.7 2.5 12 247-258 12-23 (46)
248 2ep3_A Zinc finger protein 484 20.1 70 0.0024 18.6 2.5 12 247-258 12-23 (46)
No 1
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.26 E-value=1.6e-10 Score=100.00 Aligned_cols=167 Identities=14% Similarity=0.070 Sum_probs=118.5
Q ss_pred CeEEEEEeCCcccccc--CCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHH
Q 022678 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (293)
Q Consensus 14 s~LviIlD~s~~~w~~--~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~ 91 (293)
..++++||+|..|... .|+||....+.+..|+++|+.++|..++++|+...+.++++.|.+... .
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~-------------~ 69 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDY-------------G 69 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCH-------------H
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCH-------------H
Confidence 4689999999999877 799999999999999999999999999999999876789998877543 2
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCCCCchhHHHHHHHHHHHHc
Q 022678 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSPDGPEQYVAIMNAIFSAQR 167 (293)
Q Consensus 92 ~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~D~~~qYi~lmN~ifaAqk 167 (293)
.+...|. .-.. .+.+.+..||.+|...+.+.. ....+.| .+.|....-..+..++..+++
T Consensus 70 ~i~~~L~----~l~~---------~g~t~l~~aL~~A~~~l~~~~---~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~ 133 (192)
T 2x5n_A 70 KFLSAMH----DLPV---------RGNAKFGDGIQIAQLALKHRE---NKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKK 133 (192)
T ss_dssp HHHHHHT----TCCC---------CSCCCHHHHHHHHHHHHHTCS---CTTSEEEEEEEECSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCC---------CCCchHHHHHHHHHHHHHhcc---ccCCCceEEEEEECCCCCCchhHHHHHHHHHH
Confidence 2344443 2111 135789999999987766531 1122334 122221112256788999999
Q ss_pred CCeeEEEEEcCCcC--hHHHHHHHhhcC----CeeeeeCCcch-HHHHHH
Q 022678 168 SMVPIDSCYLGAQN--SAFLQQASYITG----GVHHKPQQLDG-LFQYLL 210 (293)
Q Consensus 168 ~~I~Idv~~L~~~e--~~iLqQa~~~T~----G~Y~~~~~~~~-l~~~L~ 210 (293)
.+|+|+++.+|..+ .. |+++++.+| +.|..+..... |.+.|+
T Consensus 134 ~gi~v~~Ig~G~~~~~~~-l~~la~~~n~~~~s~~~~~~~~~~~l~d~~~ 182 (192)
T 2x5n_A 134 NNVAIDIIHIGELQNESA-LQHFIDAANSSDSCHLVSIPPSPQLLSDLVN 182 (192)
T ss_dssp TTEEEEEEEESCC---CH-HHHHHHHHCSTTCCEEEEECCCSSCHHHHHH
T ss_pred CCCEEEEEEeCCCCccHH-HHHHHHhccCCCceEEEEecCcchhHHHHHh
Confidence 99999999998442 25 999999976 45665554443 334443
No 2
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.16 E-value=6.5e-10 Score=100.98 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=120.1
Q ss_pred eEEEEEeCCcccccc--CCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022678 15 LVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (293)
Q Consensus 15 ~LviIlD~s~~~w~~--~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (293)
-.+|+||.|..|... .|+||....+++..|++.++.+||.++|+||++....+.++-|.+.+. ..
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~-------------~~ 71 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEF-------------GK 71 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCH-------------HH
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchH-------------HH
Confidence 378999999999876 899999999999999999999999999999999877777777765433 22
Q ss_pred HHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC-----CCCCCchhHHHHHHHHHHHHc
Q 022678 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQR 167 (293)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR-----~S~D~~~qYi~lmN~ifaAqk 167 (293)
++..|..+ .. .+.+.++.+|.+|...+.+... +....| .++...+ --.+..++..++|
T Consensus 72 il~aL~~l-------~~------~G~T~l~~gL~~A~~aLk~~~~---k~~~~rIIlf~ds~~~~~-~~~l~~lak~lkk 134 (268)
T 4b4t_W 72 ILAGLHDT-------QI------EGKLHMATALQIAQLTLKHRQN---KVQHQRIVAFVCSPISDS-RDELIRLAKTLKK 134 (268)
T ss_dssp HHHHHTTC-------CC------CSCCCHHHHHHHHHHHHHTCSC---TTSEEEEEEEECSCCSSC-HHHHHHHHHHHHH
T ss_pred HHHHhhhc-------Cc------CCCCChHHHHHHHHHHHHhccc---CCCceEEEEEECCCCCCC-HHHHHHHHHHHHH
Confidence 44444322 11 2578999999999987766421 123334 3332222 2257789999999
Q ss_pred CCeeEEEEEcCCc--ChHHHHHHHhhcCC-----eeeeeCCc--chHHHHHHH
Q 022678 168 SMVPIDSCYLGAQ--NSAFLQQASYITGG-----VHHKPQQL--DGLFQYLLT 211 (293)
Q Consensus 168 ~~I~Idv~~L~~~--e~~iLqQa~~~T~G-----~Y~~~~~~--~~l~~~L~~ 211 (293)
.||.|||+.+|.. ....|++.++..|| .|++..-+ .-|.+.|+.
T Consensus 135 ~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v~~g~~~lsd~l~~ 187 (268)
T 4b4t_W 135 NNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIAS 187 (268)
T ss_dssp HTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEECCCSSCHHHHHHT
T ss_pred cCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEeCCCCccHHHHHhc
Confidence 9999999999843 45699999999987 34433222 235566654
No 3
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=1.2e-08 Score=88.05 Aligned_cols=167 Identities=11% Similarity=0.048 Sum_probs=109.8
Q ss_pred CCCCCCCeEEEEEeCCcccccc--CCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCC
Q 022678 8 LYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGR 85 (293)
Q Consensus 8 ~~~~~~s~LviIlD~s~~~w~~--~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~ 85 (293)
.....+-.+++|||.|..|... .|.++..+-+.+..|++. -+..+++||... +.++.++|...+.
T Consensus 6 ~~~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~----~~~~~v~lv~F~-~~~~~~~~~~~~~-------- 72 (218)
T 3ibs_A 6 AVKRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDE----LDNDKVGMIVFA-GDAFTQLPITSDY-------- 72 (218)
T ss_dssp ----CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHT----CSSCEEEEEEES-SSEEEEEEEESCH--------
T ss_pred ccccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHh----CCCCeEEEEEEC-CCceEeCCCCCCH--------
Confidence 3445567899999999999876 677888777776666655 357899999987 4578888865432
Q ss_pred chhHHHHHHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC-------CCCCCchhHHHH
Q 022678 86 MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-------GSPDGPEQYVAI 158 (293)
Q Consensus 86 ~~~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR-------~S~D~~~qYi~l 158 (293)
..+.+.|..+ ... .. ..+.+.+..||..|+..+.+. ....| +-.+.+ .+
T Consensus 73 -----~~~~~~l~~l-~~~--~~------~~g~T~l~~al~~a~~~l~~~------~~~~~~ivllTDG~~~~~----~~ 128 (218)
T 3ibs_A 73 -----ISAKMFLESI-SPS--LI------SKQGTAIGEAINLATRSFTPQ------EGVGRAIIVITDGENHEG----GA 128 (218)
T ss_dssp -----HHHHHHHHTC-CGG--GC------CSCSCCHHHHHHHHHTTSCSC------SSCCEEEEEEECCTTCCS----CH
T ss_pred -----HHHHHHHHhc-Ccc--cC------CCCCCcHHHHHHHHHHHHhhC------CCCCcEEEEEcCCCCCCC----cH
Confidence 1222333222 110 00 024578888898887655432 12223 222222 24
Q ss_pred HHHHHHHHcCCeeEEEEEcCC--------------------------cChHHHHHHHhhcCCeeeeeCCcchHHHHHHH
Q 022678 159 MNAIFSAQRSMVPIDSCYLGA--------------------------QNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 211 (293)
Q Consensus 159 mN~ifaAqk~~I~Idv~~L~~--------------------------~e~~iLqQa~~~T~G~Y~~~~~~~~l~~~L~~ 211 (293)
...+..+++.+|+|.++++|. .+...|+++|..|||.|+.+.+....++.++.
T Consensus 129 ~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~ 207 (218)
T 3ibs_A 129 VEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQ 207 (218)
T ss_dssp HHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHH
Confidence 567888999999999999974 24779999999999999999985555554443
No 4
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.63 E-value=1.8e-06 Score=72.01 Aligned_cols=164 Identities=9% Similarity=0.001 Sum_probs=108.2
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (293)
+--+++|||.|..|... ....++.+..++..++. +..+++||... +.++.++|...+. ..
T Consensus 6 ~~dvv~vlD~SgSM~~~----~~~~~~~~~~~~~~~~~--~~~~v~lv~f~-~~~~~~~~~~~~~-------------~~ 65 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANN----WIEIYNFVQQLAERFVS--PEMRLSFIVFS-SQATIILPLTGDR-------------GK 65 (182)
T ss_dssp CEEEEEEEECSGGGGGG----HHHHHHHHHHHHHHCCC--TTEEEEEEEES-SSEEEEEEEECCH-------------HH
T ss_pred ceeEEEEEECCCCcccC----HHHHHHHHHHHHHHhcC--CCceEEEEEeC-CCceEEECCCCCH-------------HH
Confidence 44789999999999764 22345556666666643 78999999886 5567777765322 12
Q ss_pred HHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCCC--CchhHHHHHHHHHHHH
Q 022678 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSPD--GPEQYVAIMNAIFSAQ 166 (293)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~D--~~~qYi~lmN~ifaAq 166 (293)
+.+.|..+-... . .+.+.+..||..|+..+.+... ....| .|.- .....-.+...+..++
T Consensus 66 ~~~~l~~l~~~~----~------~g~T~~~~al~~a~~~l~~~~~----~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~ 131 (182)
T 1shu_X 66 ISKGLEDLKRVS----P------VGETYIHEGLKLANEQIQKAGG----LKTSSIIIALTDGKLDGLVPSYAEKEAKISR 131 (182)
T ss_dssp HHHHHHHHHTCC----C------CSCCCHHHHHHHHHHHHHHHTG----GGSCEEEEEEECCCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCC----C------CCCchHHHHHHHHHHHHHhccC----CCCCeEEEEECCCCcCCCCchhHHHHHHHHH
Confidence 334444332110 0 1357889999999988876421 11222 2221 1111112345777889
Q ss_pred cCCeeEEEEEcCCcChHHHHHHHhhcCCeeeeeCCcchHHHHHH
Q 022678 167 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL 210 (293)
Q Consensus 167 k~~I~Idv~~L~~~e~~iLqQa~~~T~G~Y~~~~~~~~l~~~L~ 210 (293)
+.+|+|.++++|..+...|+++|..|+|.|....+.+.|.+.+-
T Consensus 132 ~~~i~i~~igvg~~~~~~L~~ia~~~~~~~~~~~~~~~L~~~~~ 175 (182)
T 1shu_X 132 SLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIIN 175 (182)
T ss_dssp HTTCEEEEEECSSCCHHHHHHHSSSGGGEEESSSTTHHHHHHHH
T ss_pred hCCCEEEEEeCCcCCHHHHHHHhCCCCceEEccCCHHHHHHHHH
Confidence 99999999999977899999999999999998877777666543
No 5
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.37 E-value=2.7e-06 Score=73.13 Aligned_cols=178 Identities=8% Similarity=0.051 Sum_probs=103.1
Q ss_pred CCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHH
Q 022678 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (293)
Q Consensus 12 ~~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~ 91 (293)
.+--+++|||.|..|... .+..+.+.+..|++.+-..++..+++||... +.++.+++...... .+ .+
T Consensus 14 ~~~div~vlD~SgSM~~~---~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~-~~~~~~~~~~~~~~--------~~-~~ 80 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGAS---NFTGAKKSLVNLIEKVASYGVKPRYGLVTYA-TYPKIWVKVSEADS--------SN-AD 80 (223)
T ss_dssp -CEEEEEEEECSTTTCHH---HHHHHHHHHHHHHHHHHTTTCCCEEEEEEES-SSEEEEECTTSGGG--------GC-HH
T ss_pred CceeEEEEEeCCCCCchH---HHHHHHHHHHHHHHHHhcCCCCceEEEEEec-CccceeeccccCCC--------CC-HH
Confidence 456789999999998764 4777777788888877777777899999887 45677776532210 00 01
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCC---CCCCC-------CCCCCchhHHHHHHH
Q 022678 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLL---HPQPR-------GSPDGPEQYVAIMNA 161 (293)
Q Consensus 92 ~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~---~~~sR-------~S~D~~~qYi~lmN~ 161 (293)
.+.+.|..+-. ... ...+.+.+..||..|+..+...... .+ ....| +-...+.........
T Consensus 81 ~~~~~i~~l~~----~~~----~~~g~T~~~~aL~~a~~~l~~~~~~-~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~ 151 (223)
T 1q0p_A 81 WVTKQLNEINY----EDH----KLKSGTNTKKALQAVYSMMSWPDDV-PPEGWNRTRHVIILMTDGLHNMGGDPITVIDE 151 (223)
T ss_dssp HHHHHHHTCCT----TSC----SCTTCCCHHHHHHHHHHHHCCTTSS-CCTTGGGCEEEEEEEECSCCCSSSCTHHHHHH
T ss_pred HHHHHHHhccc----ccc----cCCCCccHHHHHHHHHHHhhccccc-cccccccCCeEEEEECCCCCCCCCChHHHHHH
Confidence 23444433211 000 0124678889999888776642110 00 01112 211111011133344
Q ss_pred H----------HHHHcCCeeEEEEEcCC-cChHHHHHHHhhcCC--eeeeeCCcchHHHHHHH
Q 022678 162 I----------FSAQRSMVPIDSCYLGA-QNSAFLQQASYITGG--VHHKPQQLDGLFQYLLT 211 (293)
Q Consensus 162 i----------faAqk~~I~Idv~~L~~-~e~~iLqQa~~~T~G--~Y~~~~~~~~l~~~L~~ 211 (293)
+ ..+++.+|+|.++++|. .+...|+++|..|+| .|+.+.+.+.|.+.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~~~ 214 (223)
T 1q0p_A 152 IRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQ 214 (223)
T ss_dssp HHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC----------
T ss_pred HHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHHHH
Confidence 4 33467899999999974 377899999999999 89999888777665543
No 6
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.29 E-value=2.3e-05 Score=76.11 Aligned_cols=168 Identities=11% Similarity=0.031 Sum_probs=107.6
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (293)
+--+++|||.|..|+.. +.++..+-+.+..|++. +.+..+++||... +.++.++|...... .+.. .
T Consensus 77 ~~dvv~VLD~SGSM~~~-~~rl~~ak~a~~~ll~~---L~~~drv~lV~Fs-~~a~~~~p~t~~l~------~~~~---~ 142 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYP-RTKMMAAKEATKVAIDT---LTDGAFFAVVAGT-EGARVVYPTGGQLL------RADY---Q 142 (464)
T ss_dssp CEEEEEEEECCGGGGTT-THHHHHHHHHHHHHHHH---SCTTCEEEEEEES-SSEEEEESSSSSCE------ECSH---H
T ss_pred CceEEEEEEcCcccCCC-CchHHHHHHHHHHHHHh---CCCCCEEEEEEEc-CceEEEecCCcccc------cCCH---H
Confidence 44699999999999732 45688777777777765 3477899998876 67888888753110 0000 1
Q ss_pred HHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC-------CCCCCchhHHHHHHHHHHH
Q 022678 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-------GSPDGPEQYVAIMNAIFSA 165 (293)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR-------~S~D~~~qYi~lmN~ifaA 165 (293)
-.+.+.+.+..-.. .+.+.+..||..|+..+.+. ....| +-++.+ .+..+.+.+ .+
T Consensus 143 ~~~~l~~~I~~L~~---------~GgT~l~~aL~~A~~~l~~~------~~~~~~IILLTDG~~~~~-~~~~l~~~~-~a 205 (464)
T 4fx5_A 143 SRAAAKEAVGRLHA---------NGGTAMGRWLAQAGRIFDTA------PSAIKHAILLTDGKDESE-TPADLARAI-QS 205 (464)
T ss_dssp HHHHHHHHHHTCCC---------CSCCCHHHHHHHHHHHHTTC------TTSEEEEEEEESSCCTTS-CHHHHHHHH-HH
T ss_pred HHHHHHHHHHcCCC---------CCCCcHHHHHHHHHHHHhcC------CCCCCEEEEEcCCCCCCC-ChHHHHHHH-HH
Confidence 12223333322111 13568899999998876552 11223 222111 122233444 35
Q ss_pred HcCCeeEEEEEcCC-cChHHHHHHHhhcCCeeeeeCCcchHHHHHHH
Q 022678 166 QRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 211 (293)
Q Consensus 166 qk~~I~Idv~~L~~-~e~~iLqQa~~~T~G~Y~~~~~~~~l~~~L~~ 211 (293)
.+.+|+|.++++|. .+..+|+++|+.|||.|+.+.+.+.|.+.+..
T Consensus 206 ~~~~i~i~tiGiG~~~d~~~L~~IA~~tgG~~~~v~d~~~L~~~f~~ 252 (464)
T 4fx5_A 206 SIGNFTADCRGIGEDWEPKELRKIADALLGTVGIIRDPATLAEDFRE 252 (464)
T ss_dssp HTTTCEEEEEEESSSSCHHHHHHHHHHTTCCEEEESSGGGHHHHHHH
T ss_pred hcCCCeEEEEEeCCccCHHHHHHHHHhCCCEEEEcCCHHHHHHHHHH
Confidence 67899999999984 37789999999999999999998877655543
No 7
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.24 E-value=8.1e-06 Score=70.84 Aligned_cols=163 Identities=13% Similarity=0.094 Sum_probs=99.2
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHc----CCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchh
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILT----LNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPS 88 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~----~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~ 88 (293)
+--+++|||.|..|.. +. .+..|+..++. ..+..+++||... +.++.++|...... .
T Consensus 22 ~~div~vlD~SgSM~~-----~~----~~k~~~~~~~~~l~~~~~~~rv~lv~F~-~~~~~~~~l~~~~~-------~-- 82 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIYP-----WE----SVIAFLNDLLKRMDIGPKQTQVGIVQYG-ENVTHEFNLNKYSS-------T-- 82 (223)
T ss_dssp CEEEEEEEECSTTCCC-----HH----HHHHHHHHHHTTSCCSTTSCCEEEEEES-SSEEEEECTTTCCS-------H--
T ss_pred cceEEEEEECCCChhh-----HH----HHHHHHHHHHHhcccCCCCeEEEEEEeC-CCccEEEecCCCCC-------H--
Confidence 4568999999999862 44 44555555544 3578899999986 56788888732221 0
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCcccc-ccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCCCCchhHHHHHHHHH
Q 022678 89 LCATLLQNLEEFMNKDEQLGKQEPEGRIA-CSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSPDGPEQYVAIMNAIF 163 (293)
Q Consensus 89 ~~~~i~~~L~~l~~~~~~~~~~~~~~~~~-~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~D~~~qYi~lmN~if 163 (293)
..+.++|..+ ... .+ .+.+..||..|+..+..... +......| .|.........+...+.
T Consensus 83 --~~~~~~i~~l----~~~--------gG~~T~~~~aL~~a~~~l~~~~~-~~~~~~~~~iillTDG~~~~~~~~~~~~~ 147 (223)
T 2b2x_A 83 --EEVLVAANKI----VQR--------GGRQTMTALGIDTARKEAFTEAR-GARRGVKKVMVIVTDGESHDNYRLKQVIQ 147 (223)
T ss_dssp --HHHHHHHTTC----CCC--------CCSSCCHHHHHHHHHHTTSSGGG-TCCTTSEEEEEEEESSCCTTGGGHHHHHH
T ss_pred --HHHHHHHHhh----hcc--------CCCCccHHHHHHHHHHHhcCccc-CCCCCCCeEEEEEcCCCCCCCccHHHHHH
Confidence 1233333221 001 12 36788888888765322111 11111222 22211111113456778
Q ss_pred HHHcCCeeEEEEEcCCc-C---------hHHHHHHHhh-cCCeeeeeCCcchHHHHH
Q 022678 164 SAQRSMVPIDSCYLGAQ-N---------SAFLQQASYI-TGGVHHKPQQLDGLFQYL 209 (293)
Q Consensus 164 aAqk~~I~Idv~~L~~~-e---------~~iLqQa~~~-T~G~Y~~~~~~~~l~~~L 209 (293)
.+++.+|+|.++++|.. + ...|+++|.. |||.|+.+.+.+.|.+.+
T Consensus 148 ~~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~L~~i~ 204 (223)
T 2b2x_A 148 DCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIV 204 (223)
T ss_dssp HHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGH
T ss_pred HHHHCCCEEEEEEecCccccccccchhHHHHHHHHhCCCchhcEEEeCCHHHHHHHH
Confidence 88999999999999732 1 3799999999 999999998876665443
No 8
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.20 E-value=2e-05 Score=65.70 Aligned_cols=165 Identities=10% Similarity=0.004 Sum_probs=107.4
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (293)
+--+++|||.|..|... +....+.+..++..+ .++..+++||... +.++.++|...+. +.
T Consensus 7 ~~div~vlD~SgSM~~~----~~~~~~~~~~~~~~~--~~~~~~v~lv~f~-~~~~~~~~l~~~~-------------~~ 66 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLHH----WNEIYYFVEQLAHKF--ISPQLRMSFIVFS-TRGTTLMKLTEDR-------------EQ 66 (185)
T ss_dssp EEEEEEEEECSGGGGGG----HHHHHHHHHHHHHHC--CCTTEEEEEEEES-SSEEEEEEEECCH-------------HH
T ss_pred CeeEEEEEeCCCChhhh----HHHHHHHHHHHHHHh--CCCCcEEEEEEEe-cCceEEeccCCCH-------------HH
Confidence 44689999999999763 666777777777777 4578899999876 5678888876432 23
Q ss_pred HHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCCCCc--hhHHHHHHHHHHHH
Q 022678 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSPDGP--EQYVAIMNAIFSAQ 166 (293)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~D~~--~qYi~lmN~ifaAq 166 (293)
+.+.|..+-... . .+.+.+..||..|+..+....+.+. ...| .|.... .........+..++
T Consensus 67 ~~~~i~~l~~~~--~--------~g~T~~~~al~~a~~~l~~~~~~~~--~~~~~iillTDG~~~~~~~~~~~~~~~~~~ 134 (185)
T 3n2n_F 67 IRQGLEELQKVL--P--------GGDTYMHEGFERASEQIYYENRQGY--RTASVIIALTDGELHEDLFFYSEREANRSR 134 (185)
T ss_dssp HHHHHHHHHTCC--C--------CSCCCHHHHHHHHHHHHHHHHTTCB--CEEEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhc--C--------CCCccHHHHHHHHHHHHhhccccCC--CCCcEEEEEcCCCCCCCcccchHHHHHHHH
Confidence 555555442110 0 1357889999999887754322110 1122 233222 21113356788899
Q ss_pred cCCeeEEEEEcCCcChHHHHHHHhhcCCeeeeeCCcchHHHHH
Q 022678 167 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 209 (293)
Q Consensus 167 k~~I~Idv~~L~~~e~~iLqQa~~~T~G~Y~~~~~~~~l~~~L 209 (293)
+.+|+|-++++|..+...|+++|...++.|....+.+.|.+++
T Consensus 135 ~~gi~i~~igvg~~~~~~L~~iA~~~~~~~~~~~~~~~L~~~~ 177 (185)
T 3n2n_F 135 DLGAIVYAVGVKDFNETQLARIADSKDHVFPVNDGFQALQGII 177 (185)
T ss_dssp HTTEEEEEEECSSCCHHHHTTTSSSGGGEEEHHHHHHHHHHHH
T ss_pred HCCCEEEEEEeccCCHHHHHHHhCCCCCeEEeccHHHHHHHHH
Confidence 9999999999997789999999987766665432255554443
No 9
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.18 E-value=6.2e-07 Score=75.95 Aligned_cols=167 Identities=12% Similarity=0.068 Sum_probs=99.1
Q ss_pred CCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHH
Q 022678 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (293)
Q Consensus 12 ~~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~ 91 (293)
.+--+++|||.|..|... .+....+.+..|+..+. .+..+++||.... .++.++|...... ..
T Consensus 8 ~~~div~vlD~SgSM~~~---~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~-~~~~~~~~~~~~~----~~------- 70 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSR---NFATMMNFVRAVISQFQ--RPSTQFSLMQFSN-KFQTHFTFEEFRR----SS------- 70 (198)
T ss_dssp CCEEEEEEEECCTTSCHH---HHHHHHHHHHHHHTTSC--TTTEEEEEEEESS-SEEEEECHHHHHH----CS-------
T ss_pred CCeeEEEEEECCCCCCHH---HHHHHHHHHHHHHHhcC--CCCcEEEEEEeCC-CccEEEecCccCC----HH-------
Confidence 345789999999998764 35555666666665544 7888999999874 4666666532100 00
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCCCCch-hHHHHHHHHHHHH
Q 022678 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSPDGPE-QYVAIMNAIFSAQ 166 (293)
Q Consensus 92 ~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~D~~~-qYi~lmN~ifaAq 166 (293)
.+.+.|..+ .. ..+.+.+..||..|+..+.+... +......| .|.-... ...+....+..++
T Consensus 71 ~~~~~i~~l-------~~-----~~g~T~~~~al~~a~~~l~~~~~-~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~ 137 (198)
T 1n3y_A 71 NPLSLLASV-------HQ-----LQGFTYTATAIQNVVHRLFHASY-GARRDAAKILIVITDGKKEGDSLDYKDVIPMAD 137 (198)
T ss_dssp SGGGGGTTC-------CC-----CCSCBCHHHHHHHHHTTTTSGGG-TCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHH
T ss_pred HHHHHHhcC-------cC-----CCCCchHHHHHHHHHHHHhCccc-CCCCCCceEEEEECCCCCCCCcccHHHHHHHHH
Confidence 011112111 00 02457888889888854422111 11011122 1221110 1112346778889
Q ss_pred cCCeeEEEEEcCCcC-----hHHHHHHHhhcCCee-eeeCCcchHHHH
Q 022678 167 RSMVPIDSCYLGAQN-----SAFLQQASYITGGVH-HKPQQLDGLFQY 208 (293)
Q Consensus 167 k~~I~Idv~~L~~~e-----~~iLqQa~~~T~G~Y-~~~~~~~~l~~~ 208 (293)
+.+|+|.++.+|... ...|+++|..|||.| +.+.+.+.|.+.
T Consensus 138 ~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~~ 185 (198)
T 1n3y_A 138 AAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDI 185 (198)
T ss_dssp HTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGGG
T ss_pred HCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHHHHHHH
Confidence 999999999997433 589999999999998 777776655433
No 10
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.16 E-value=4.8e-05 Score=64.00 Aligned_cols=166 Identities=20% Similarity=0.172 Sum_probs=100.8
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (293)
+--+++|||.|..|... ++..+.+.+..|++.+-......+++||... +.++.++|.....+ . +.
T Consensus 5 ~~div~vlD~SgSm~~~---~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~-~~~~~~~~l~~~~~-------~----~~ 69 (189)
T 1atz_A 5 PLDVILLLDGSSSFPAS---YFDEMKSFAKAFISKANIGPRLTQVSVLQYG-SITTIDVPWNVVPE-------K----AH 69 (189)
T ss_dssp CEEEEEEEECSSSSCHH---HHHHHHHHHHHHHHHSCBSTTSEEEEEEEES-SSEEEEECTTCCCC-------H----HH
T ss_pred ceeEEEEEeCCCCCChh---hHHHHHHHHHHHHHhcCcCCCCeEEEEEEEC-CcceEEEecCCCCC-------H----HH
Confidence 44689999999998653 4666555555555553222334589999885 56788888743321 0 12
Q ss_pred HHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCCCCchhHHHHHHHHHHHHcC
Q 022678 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSPDGPEQYVAIMNAIFSAQRS 168 (293)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~D~~~qYi~lmN~ifaAqk~ 168 (293)
+.+.|..+ ... .+.+.+..||..|+..+..... +......| .+.|.... ++...+..+++.
T Consensus 70 ~~~~i~~l----~~~--------~g~T~~~~aL~~a~~~l~~~~~-g~r~~~~~~vivltdg~~~~--~~~~~~~~~~~~ 134 (189)
T 1atz_A 70 LLSLVDVM----QRE--------GGPSQIGDALGFAVRYLTSEMH-GARPGASKAVVILVTDVSVD--SVDAAADAARSN 134 (189)
T ss_dssp HHHHHHTC----CCC--------CCCCCHHHHHHHHHHHHHSCCT-TCCTTSEEEEEEEECSCCSS--CCHHHHHHHHHT
T ss_pred HHHHHHhC----cCC--------CCcchHHHHHHHHHHHHhcccc-CCCCCCCcEEEEEeCCCCCc--hHHHHHHHHHHC
Confidence 33333322 111 1357888899988877654211 00011122 22221111 234678888999
Q ss_pred CeeEEEEEcCC-cChHHHHHHHhhcCCeee-eeCCcchHHHH
Q 022678 169 MVPIDSCYLGA-QNSAFLQQASYITGGVHH-KPQQLDGLFQY 208 (293)
Q Consensus 169 ~I~Idv~~L~~-~e~~iLqQa~~~T~G~Y~-~~~~~~~l~~~ 208 (293)
+|+|.++++|. .+...|+++|..++|.|+ .+.+.+.|-.+
T Consensus 135 gi~v~~igvG~~~~~~~L~~iA~~~~~~~~~~~~~~~~~~~l 176 (189)
T 1atz_A 135 RVTVFPIGIGDRYDAAQLRILAGPAGDSNVVKLQRIEDLPTM 176 (189)
T ss_dssp TEEEEEEEESSSSCHHHHHHHTGGGGGGGCEEESSTTHHHHH
T ss_pred CCEEEEEEcCCcCCHHHHHHHHCCCcccCEEEecChhhHHHH
Confidence 99999999985 477899999999988654 45555555444
No 11
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.14 E-value=4.3e-05 Score=68.73 Aligned_cols=172 Identities=9% Similarity=0.024 Sum_probs=104.2
Q ss_pred CCeEEEEEeCCccccccCCccH-HHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHH
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSF-SQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l-~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~ 91 (293)
+--+++|||.|..|-.. .+ ..+.+.+..|++.+-......+++||... ..+..++|...... ... +
T Consensus 21 ~~div~vlD~SgSM~~~---~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs-~~~~~~~~l~~~~~-----~~~----~ 87 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRH---NWVNHAVPLAMKLIQQLNLNDNAIHLYASVFS-NNAREIIRLHSDAS-----KNK----E 87 (281)
T ss_dssp CEEEEEEEECCCCSSTH---HHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEE-TTEEEEEEECSSCS-----SCH----H
T ss_pred ceeEEEEEeCCCCcCHH---HHHHHHHHHHHHHHHHhccCCCCcEEEEEEcC-CCceEEEEccccCc-----cCH----H
Confidence 45699999999988643 23 33444444444433333336789999877 45677777655421 000 2
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCCCCchhHHHHHHHHHHHHc
Q 022678 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSPDGPEQYVAIMNAIFSAQR 167 (293)
Q Consensus 92 ~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~D~~~qYi~lmN~ifaAqk 167 (293)
.+.+.|..+...... .+.+.+..||..|+..+... .......| .|.........+...+..+++
T Consensus 88 ~l~~~i~~l~~~~~~---------~G~T~~~~aL~~a~~~l~~~---~~r~~~~~~iillTDG~~~d~~~~~~~~~~l~~ 155 (281)
T 4hqf_A 88 KALIIIKSLLSTNLP---------YGKTSLTDALLQVRKHLNDR---INRENANQLVVILTDGIPDSIQDSLKESRKLSD 155 (281)
T ss_dssp HHHHHHHHHHHTTGG---------GCSCCHHHHHHHHHHHHHTS---CCCTTCEEEEEEEESSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCC---------CCCccHHHHHHHHHHHHHhc---cCCCCCCEEEEEEecCCCCCcHHHHHHHHHHHH
Confidence 355556555321101 13567888898887666542 11011122 233222222356788899999
Q ss_pred CCeeEEEEEcCCc-ChHHHHHHHhh--cCC--eeeeeCCcchHHHHH
Q 022678 168 SMVPIDSCYLGAQ-NSAFLQQASYI--TGG--VHHKPQQLDGLFQYL 209 (293)
Q Consensus 168 ~~I~Idv~~L~~~-e~~iLqQa~~~--T~G--~Y~~~~~~~~l~~~L 209 (293)
.+|+|-++++|.. +..+|+++|.. |+| .|+.+.+.+.|.+++
T Consensus 156 ~gv~i~~igiG~~~~~~~L~~iA~~~~~~g~~~~~~~~~~~~L~~~~ 202 (281)
T 4hqf_A 156 RGVKIAVFGIGQGINVAFNRFLVGCHPSDGKCNLYADSAWENVKNVI 202 (281)
T ss_dssp TTCEEEEEEESSSCCHHHHHHHTTSCSSSSCCTTEEEECGGGHHHHH
T ss_pred CCCEEEEEeCCCccCHHHHHhhhCCCCCCCCCceEEecchhhhhccc
Confidence 9999999999863 77899999987 676 777777776665443
No 12
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.14 E-value=3.3e-05 Score=74.59 Aligned_cols=178 Identities=8% Similarity=0.045 Sum_probs=109.8
Q ss_pred eEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHHHH
Q 022678 15 LVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLL 94 (293)
Q Consensus 15 ~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~~i~ 94 (293)
-|++|||.|..|.. .++..+.+.+..|++.+-.....-+++||... +.++.+++...... .+ .+.+.
T Consensus 3 div~vlD~SgSM~~---~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~-~~~~~~~~~~~~~~--------~~-~~~~~ 69 (497)
T 1rrk_A 3 NIYLVLDGSDSIGA---SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYA-TYPKIWVKVSEADS--------SN-ADWVT 69 (497)
T ss_dssp EEEEEEECSTTTCH---HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEES-SSEEEEECTTSGGG--------GC-HHHHH
T ss_pred eEEEEEECCCCcch---hhHHHHHHHHHHHHHHhhccCCCceEEEEEec-CCceEeeccccccc--------cC-HHHHH
Confidence 48999999999966 47888888888899888777788899999987 56677775432110 00 02344
Q ss_pred HHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCC--CCCCC----CCC---CCchhHHHHHHHHHHH
Q 022678 95 QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLL--HPQPR----GSP---DGPEQYVAIMNAIFSA 165 (293)
Q Consensus 95 ~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~--~~~sR----~S~---D~~~qYi~lmN~ifaA 165 (293)
+.|..+-... .. ..+.+.+..||..|+..+......... ....| .|+ ..+.......+.+...
T Consensus 70 ~~l~~l~~~~---~~-----~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~ 141 (497)
T 1rrk_A 70 KQLNEINYED---HK-----LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDL 141 (497)
T ss_dssp HHHHHCCGGG---SC-----CTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHH
T ss_pred HHHHhCcCcc---cc-----ccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHH
Confidence 5554442111 00 013578889998888776321100000 01112 121 1111111222333222
Q ss_pred ----------HcCCeeEEEEEcCC-cChHHHHHHHhhcCC--eeeeeCCcchHHHHHHHhc
Q 022678 166 ----------QRSMVPIDSCYLGA-QNSAFLQQASYITGG--VHHKPQQLDGLFQYLLTIF 213 (293)
Q Consensus 166 ----------qk~~I~Idv~~L~~-~e~~iLqQa~~~T~G--~Y~~~~~~~~l~~~L~~~~ 213 (293)
++.+|+|.++.+|. .+...|+++|..|+| .|+.+.+.+.|.+.+...+
T Consensus 142 ~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~i 202 (497)
T 1rrk_A 142 LYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMI 202 (497)
T ss_dssp TTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHS
T ss_pred hhhhcccccchhcCeeEEEecCCCccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhcc
Confidence 33499999999975 477899999999999 9999998888877776543
No 13
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.10 E-value=4.6e-05 Score=64.78 Aligned_cols=168 Identities=11% Similarity=0.043 Sum_probs=98.9
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (293)
+--+++|||.|..|. .+..+.+.+..|++.+-.....-+++||... +.++.++|...... ...
T Consensus 6 ~~div~vlD~SgSm~-----~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~-~~~~~~~~l~~~~~-----------~~~ 68 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY-----PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYA-NNPRVVFNLNTYKT-----------KEE 68 (200)
T ss_dssp CEEEEEEEECCTTCC-----CHHHHHHHHHHHHHTSCBSTTSEEEEEEEES-SSEEEEECTTTCSS-----------HHH
T ss_pred cccEEEEEECCCCcc-----cHHHHHHHHHHHHHhcCCCCCceEEEEEEEC-CCceEEEeCCCcCC-----------HHH
Confidence 446899999999886 2444444444444433222357899999886 56788888773221 023
Q ss_pred HHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCCCCchhHHHHHHHHHHHHcC
Q 022678 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSPDGPEQYVAIMNAIFSAQRS 168 (293)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~D~~~qYi~lmN~ifaAqk~ 168 (293)
+.+.|..+. ..+ .+.+.+..||..|+..+..... +......| .|...+..-..+...+..+++.
T Consensus 69 ~~~~i~~l~----~~~-------G~~T~~~~al~~a~~~~~~~~~-g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~ 136 (200)
T 1v7p_C 69 MIVATSQTS----QYG-------GDLTNTFGAIQYARKYAYSAAS-GGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHD 136 (200)
T ss_dssp HHHHHHHCC----CCC-------CSCCCHHHHHHHHHHHTTSGGG-TCCTTSEEEEEEEESSCCSCGGGHHHHHHHHHHT
T ss_pred HHHHHHhhh----ccC-------CCCCcHHHHHHHHHHhhccccc-CCCCCCCeEEEEEccCCCCCcccHHHHHHHHHHC
Confidence 444444331 010 0136788888888765322111 11111222 2221111111345678888999
Q ss_pred CeeEEEEEcCC------cC----hHHHHHHHhhcCCee-eeeCCcchHHHHH
Q 022678 169 MVPIDSCYLGA------QN----SAFLQQASYITGGVH-HKPQQLDGLFQYL 209 (293)
Q Consensus 169 ~I~Idv~~L~~------~e----~~iLqQa~~~T~G~Y-~~~~~~~~l~~~L 209 (293)
+|+|.++.+|. .+ ...|+++|..|+|.| +.+.+.+.|.+.+
T Consensus 137 gi~i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~i~ 188 (200)
T 1v7p_C 137 NILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKA 188 (200)
T ss_dssp TEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHH
T ss_pred CCEEEEEEecccccccccchhhHHHHHHHHhCCccHhcEEEcCCHHHHHHHH
Confidence 99999999941 12 456999999999987 5677777776654
No 14
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.09 E-value=1.6e-05 Score=68.36 Aligned_cols=162 Identities=13% Similarity=0.068 Sum_probs=97.6
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHc----CCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchh
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILT----LNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPS 88 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~----~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~ 88 (293)
+--+++|||.|..|.. + +.+..|+..++. ..+..+++||... +.++.++|...... .
T Consensus 7 ~~div~vlD~SgSm~~-----~----~~~k~~~~~~~~~l~~~~~~~~v~lv~F~-~~~~~~~~l~~~~~-------~-- 67 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIYP-----W----DSVTAFLNDLLKRMDIGPKQTQVGIVQYG-ENVTHEFNLNKYSS-------T-- 67 (213)
T ss_dssp CEEEEEEEECCTTCCC-----H----HHHHHHHHHHHTTSCBSTTSBEEEEEEES-SSEEEEECTTTCSS-------H--
T ss_pred CccEEEEEECCCChhh-----H----HHHHHHHHHHHHhcCCCCCCeEEEEEEeC-CCccEEEeccccCC-------H--
Confidence 4468999999998862 3 344555555554 3578899999987 56788888732221 0
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCcccc-ccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCCCCchhHHHHHHHHH
Q 022678 89 LCATLLQNLEEFMNKDEQLGKQEPEGRIA-CSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSPDGPEQYVAIMNAIF 163 (293)
Q Consensus 89 ~~~~i~~~L~~l~~~~~~~~~~~~~~~~~-~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~D~~~qYi~lmN~if 163 (293)
..+.++|..+. .. .+ .+.+..||..|+..+..... +......| .|...+..-..+...+.
T Consensus 68 --~~~~~~i~~l~----~~--------~G~~T~~~~aL~~a~~~l~~~~~-~~r~~~~~~iillTDG~~~~~~~~~~~~~ 132 (213)
T 1pt6_A 68 --EEVLVAAKKIV----QR--------GGRQTMTALGTDTARKEAFTEAR-GARRGVKKVMVIVTDGESHDNHRLKKVIQ 132 (213)
T ss_dssp --HHHHHHHHTCC----CC--------CCSSCCHHHHHHHHHHTTTSGGG-TCCTTCEEEEEEEESSCCSCSHHHHHHHH
T ss_pred --HHHHHHHHhcc----CC--------CCCcccHHHHHHHHHHHhcCccc-CCCCCCCeEEEEEcCCCCCCCccHHHHHH
Confidence 12334443221 01 12 35788888888765322111 11111222 22211111113456788
Q ss_pred HHHcCCeeEEEEEcCCcC----------hHHHHHHHhh-cCCeeeeeCCcchHHHH
Q 022678 164 SAQRSMVPIDSCYLGAQN----------SAFLQQASYI-TGGVHHKPQQLDGLFQY 208 (293)
Q Consensus 164 aAqk~~I~Idv~~L~~~e----------~~iLqQa~~~-T~G~Y~~~~~~~~l~~~ 208 (293)
.+++.+|+|.++.+|... ...|+++|.. |||.|+.+.+.+.|.+.
T Consensus 133 ~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~l~~i 188 (213)
T 1pt6_A 133 DCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTI 188 (213)
T ss_dssp HHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGG
T ss_pred HHHHCCCEEEEEEeccccccccccchhhHHHHHHHhCCCchhcEEEeCCHHHHHHH
Confidence 889999999999996321 3689999999 89999999887655443
No 15
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.06 E-value=3.2e-05 Score=75.00 Aligned_cols=181 Identities=12% Similarity=0.072 Sum_probs=114.2
Q ss_pred CCCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHH
Q 022678 11 DDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLC 90 (293)
Q Consensus 11 ~~~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~ 90 (293)
..+--|++|||.|..|... .+..+.+.+..|++.+-...+..+++||... +.++.++|...... .+ .
T Consensus 7 ~~~~divfvlD~SgSM~~~---~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~-~~~~~~~~l~~~~~--------~~-~ 73 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVSEN---DFLIFKESASLMVDRIFSFEINVSVAIITFA-SEPKVLMSVLNDNS--------RD-M 73 (509)
T ss_dssp SSEEEEEEEEECSTTSCHH---HHHHHHHHHHHHHHHHHTTCCCEEEEEEEES-SSEEEEECTTSGGG--------GC-H
T ss_pred CCCeeEEEEEeCCCccchh---hHHHHHHHHHHHHHHhhccCCCceEEEEEcc-CCCceeEeccCCCC--------CC-H
Confidence 4456799999999999754 5777777777788777666889999999986 57788888753110 00 0
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCC-----CCCCC----CCCC---CchhHHHH
Q 022678 91 ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLL-----HPQPR----GSPD---GPEQYVAI 158 (293)
Q Consensus 91 ~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~-----~~~sR----~S~D---~~~qYi~l 158 (293)
+.+.+.|..+--.... ..+.+.+..||..|+..+......... ....| .|+. .+......
T Consensus 74 ~~~~~~l~~l~~~~~~--------~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~ 145 (509)
T 2odp_A 74 TEVISSLENANYKDHE--------NGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTA 145 (509)
T ss_dssp HHHHHHHHTCCGGGGT--------TCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHH
T ss_pred HHHHHHHHhcccccCC--------CCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHH
Confidence 2344444333111100 013578899999998877543211000 00112 1221 11111122
Q ss_pred HHHHHH------HHcCCeeEEEEEcCC--cChHHHHHHHhhcCCe--eeeeCCcchHHHHHHHh
Q 022678 159 MNAIFS------AQRSMVPIDSCYLGA--QNSAFLQQASYITGGV--HHKPQQLDGLFQYLLTI 212 (293)
Q Consensus 159 mN~ifa------Aqk~~I~Idv~~L~~--~e~~iLqQa~~~T~G~--Y~~~~~~~~l~~~L~~~ 212 (293)
...+.. +++.+|+|.++++|. .+...|+++|..++|. |+.+.+.+.|.+++-..
T Consensus 146 ~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i 209 (509)
T 2odp_A 146 VDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHM 209 (509)
T ss_dssp HHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhh
Confidence 233322 228899999999986 5789999999999998 88888888887777554
No 16
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.99 E-value=0.00032 Score=59.81 Aligned_cols=169 Identities=13% Similarity=0.045 Sum_probs=99.5
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (293)
+--+++|||.|..|-.. +|..+.+.+..|++.+-......+++||... +.++..+|.....+ . +.
T Consensus 13 ~~divfvlD~SgSm~~~---~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs-~~~~~~~~l~~~~~-------~----~~ 77 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEA---EFEVLKAFVVDMMERLRVSQKWVRVAVVEYH-DGSHAYIGLKDRKR-------P----SE 77 (202)
T ss_dssp CEEEEEEEECBTTSCHH---HHHHHHHHHHHHHHTBCBSTTSEEEEEEEES-SSEEEEECTTCCCC-------H----HH
T ss_pred cccEEEEEECCCCCCHH---HHHHHHHHHHHHHHhcccCCCceEEEEEEEC-CCceEEEecCCCCC-------H----HH
Confidence 45799999999988543 4555555555555443222345699999876 45788888764321 0 12
Q ss_pred HHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCCCCchh--HHHHHHHHHHHH
Q 022678 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSPDGPEQ--YVAIMNAIFSAQ 166 (293)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~D~~~q--Yi~lmN~ifaAq 166 (293)
+.+.|..+ ...+ .+.+.+..||..|+..+.+ .+......| .|.-.... .-.+...+..++
T Consensus 78 ~~~~i~~l----~~~g-------g~~T~~~~aL~~a~~~~~~---~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~ 143 (202)
T 1ijb_A 78 LRRIASQV----KYAG-------SQVASTSEVLKYTLFQIFS---KIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLK 143 (202)
T ss_dssp HHHHHHTC----CCCC-------BSCCCHHHHHHHHHHHTSS---SCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHH
T ss_pred HHHHHHhC----cCCC-------CCcCcHHHHHHHHHHHHhc---cCCCCCCCeEEEEEccCCCCccchHHHHHHHHHHH
Confidence 33333222 1111 1135677778777644321 111011122 12211110 113456778889
Q ss_pred cCCeeEEEEEcCC-cChHHHHHHHhh-cCCeeeeeCCcchHHHHHH
Q 022678 167 RSMVPIDSCYLGA-QNSAFLQQASYI-TGGVHHKPQQLDGLFQYLL 210 (293)
Q Consensus 167 k~~I~Idv~~L~~-~e~~iLqQa~~~-T~G~Y~~~~~~~~l~~~L~ 210 (293)
+.+|+|-++++|. .+...|+++|.. ++|.++.+.+.+.|.+.+-
T Consensus 144 ~~gi~i~~igvG~~~~~~~L~~iA~~~~~~~~~~~~~~~~L~~~~~ 189 (202)
T 1ijb_A 144 KKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRD 189 (202)
T ss_dssp HTTEEEEEEEESTTSCHHHHHHHHHHCTTCCCEEESSGGGHHHHHH
T ss_pred HCCCEEEEEecCCcCCHHHHHHHhCCCCcccEEEeCCHHHHHHHHH
Confidence 9999999999984 477899999986 5788888888877766543
No 17
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.91 E-value=8.9e-05 Score=75.07 Aligned_cols=177 Identities=9% Similarity=0.076 Sum_probs=109.2
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (293)
+--+++|||.|..|... .|..+.+.+..|++.+-.....-+++||... +.++.++|...... . + .+.
T Consensus 243 ~~div~vlD~SgSM~~~---~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~-~~~~~~~~l~~~~~-----~---~-~~~ 309 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGAS---DFTGAKKCLVNLIEKVASYGVKPRYGLVTYA-TYPKIWVKVSEADS-----S---N-ADW 309 (741)
T ss_dssp EEEEEEEEECSTTTCHH---HHHHHHHHHHHHHHHHHHTTCCCEEEEEEES-SSEEEEECTTSGGG-----G---C-HHH
T ss_pred ceeEEEEeccCCccccc---chHHHHHHHHHHHHhhhccCCCceEEEEEec-cCCceeEeecccCC-----c---C-HHH
Confidence 44699999999998654 4777777788888887766667789999876 56788888765221 0 0 022
Q ss_pred HHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCC---CCC-------CCCCCchhHHHHHHHH
Q 022678 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP---QPR-------GSPDGPEQYVAIMNAI 162 (293)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~---~sR-------~S~D~~~qYi~lmN~i 162 (293)
+.+.|.++--..... .+.+.+..||..|+..+...... .... ..| +-.+.+.........+
T Consensus 310 ~~~~i~~l~~~~~~~--------~ggT~~~~aL~~a~~~l~~~~~~-~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i 380 (741)
T 3hrz_D 310 VTKQLNEINYEDHKL--------KSGTNTKKALQAVYSMMSWPDDV-PPEGWNRTRHVIILMTDGLHNMGGDPITVIDEI 380 (741)
T ss_dssp HHHHHTTCCGGGGSS--------SCCCCHHHHHHHHHHHHCCC--C-CCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHH
T ss_pred HHHHHHhcccccccC--------CCChHHHHHHHHHHHHHhhhhhc-cccchhccCeEEEEECCCccccCCCchHHHHHH
Confidence 444443331110001 23567888999888877421110 0001 111 1111111112333333
Q ss_pred H----------HHHcCCeeEEEEEcCC-cChHHHHHHHhhcCCe--eeeeCCcchHHHHHHH
Q 022678 163 F----------SAQRSMVPIDSCYLGA-QNSAFLQQASYITGGV--HHKPQQLDGLFQYLLT 211 (293)
Q Consensus 163 f----------aAqk~~I~Idv~~L~~-~e~~iLqQa~~~T~G~--Y~~~~~~~~l~~~L~~ 211 (293)
. .|++.+|+|.++++|. .+...|+++|..++|. |+.+.+.+.|.+.+-.
T Consensus 381 ~~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~ 442 (741)
T 3hrz_D 381 RDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQ 442 (741)
T ss_dssp HHHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHH
T ss_pred HHHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHH
Confidence 3 5678899999999975 5788999999999996 7888887766655533
No 18
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=97.91 E-value=0.00018 Score=64.32 Aligned_cols=173 Identities=8% Similarity=-0.006 Sum_probs=105.6
Q ss_pred CCeEEEEEeCCccccccCCccH-HHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHH
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSF-SQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l-~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~ 91 (293)
+--+++|||.|..|-.. .+ ..+.+.+..|+..+-...+.-+++||... +.+..++|...... .-.+
T Consensus 18 ~~DivfvlD~SgSM~~~---~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs-~~~~~~~~l~~~~~---------~~~~ 84 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYP---NWITKVIPMLNGLINSLSLSRDTINLYMNLFG-SYTTELIRLGSGQS---------IDKR 84 (266)
T ss_dssp CEEEEEEEECSTTTCHH---HHHHTHHHHHHHHHHTCCBCTTSEEEEEEEES-SSEEEEECTTSHHH---------HCHH
T ss_pred ceeEEEEEECCCCcChh---HHHHHHHHHHHHHHHHcccCCCCcEEEEEEec-CCcceEEecCCCCc---------cCHH
Confidence 34589999999988543 34 24555566666665444567889999877 45777887554210 0012
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCCCCchhHHHHHHHHHHHHc
Q 022678 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSPDGPEQYVAIMNAIFSAQR 167 (293)
Q Consensus 92 ~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~D~~~qYi~lmN~ifaAqk 167 (293)
.+.+.|..+..... . .+.+.+..||..|...+... +......| .|.-.+.....+...+..+++
T Consensus 85 ~~~~~i~~l~~~~~-~--------~G~T~~~~AL~~a~~~l~~~---~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~~ 152 (266)
T 4hqo_A 85 QALSKVTELRKTYT-P--------YGTTSMTAALDEVQKHLNDR---VNREKAIQLVILMTDGVPNSKYRALEVANKLKQ 152 (266)
T ss_dssp HHHHHHHHHHHHCC-C--------CSCCCHHHHHHHHHHHHHTT---CSCTTSEEEEEEEECSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccC-C--------CCCCCHHHHHHHHHHHHhhc---cccCCCCeEEEEEccCCCCCchHHHHHHHHHHH
Confidence 35555555521100 1 13567888888885554431 11011122 233222222356788999999
Q ss_pred CCeeEEEEEcCCc-ChHHHHHHHhhc--CC--eeeeeCCcchHHHHHH
Q 022678 168 SMVPIDSCYLGAQ-NSAFLQQASYIT--GG--VHHKPQQLDGLFQYLL 210 (293)
Q Consensus 168 ~~I~Idv~~L~~~-e~~iLqQa~~~T--~G--~Y~~~~~~~~l~~~L~ 210 (293)
.+|+|-++++|.. +..+|++++... +| .|+.+.+.+.|.+++-
T Consensus 153 ~gi~i~~iGiG~~~~~~~L~~iA~~~~~~g~~~~~~~~d~~~L~~i~~ 200 (266)
T 4hqo_A 153 RNVRLAVIGIGQGINHQFNRLIAGCRPREPNCKFYSYADWNEAVALIK 200 (266)
T ss_dssp TTCEEEEEECSSSCCHHHHHHHHTCCTTCSSCTTEECSCHHHHHHHHH
T ss_pred CCCEEEEEecCcccCHHHHHHhhCCCCCCCCCCeEEecCHHHHHHHHH
Confidence 9999999999853 677899999885 33 6777777766665443
No 19
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.86 E-value=0.00015 Score=71.97 Aligned_cols=171 Identities=12% Similarity=0.029 Sum_probs=106.3
Q ss_pred CeEEEEEeCCcccccc---CCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCC---CCch
Q 022678 14 SLVVVLLDTNPFFWSS---SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGN---GRMP 87 (293)
Q Consensus 14 s~LviIlD~s~~~w~~---~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~---~~~~ 87 (293)
.-++++||+|..|... .+.+|..+.+.+..|+..-+..++...+|||....... ..|...... -... ....
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~--~~plt~d~~-y~~i~vl~~l~ 84 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGT--DNPLSGGDQ-YQNITVHRHLM 84 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSC--BSTTCTTTC-STTEEEEEEEE
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCC--CCccccccC-CCceEEeecCC
Confidence 6799999999999876 57899999999999999988899999999999875431 112111100 0000 0000
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCC--CCchhHHHHHHH
Q 022678 88 SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSP--DGPEQYVAIMNA 161 (293)
Q Consensus 88 ~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~--D~~~qYi~lmN~ 161 (293)
.....+++.|.+.+. .+ .+.+.+..||..|.-.+.+... ..+...| .|. ++. ....+...
T Consensus 85 ~~~~~~l~~l~~~l~----~~-------~~~t~i~~al~~A~~~l~~~~~--~~k~~~krIiLlTDg~~~~-~~~~~~~~ 150 (565)
T 1jey_B 85 LPDFDLLEDIESKIQ----PG-------SQQADFLDALIVSMDVIQHETI--GKKFEKRHIEIFTDLSSRF-SKSQLDII 150 (565)
T ss_dssp CCCHHHHHHHHTTCC----CC-------SSCCCHHHHHHHHHHHHHHHSS--SSCCSEEEEEEECCCCSCC-CCTTHHHH
T ss_pred CCCHHHHHHHHhhcc----CC-------CccccHHHHHHHHHHHHHHHhh--cccccccEEEEEeCCCCCC-CHHHHHHH
Confidence 000123444443111 11 1246788899888877655421 1123334 232 221 12245678
Q ss_pred HHHHHcCCeeEE-EEEcCCcC---------------------------------hHHHHHHHhhcCC-----eeeeeCC
Q 022678 162 IFSAQRSMVPID-SCYLGAQN---------------------------------SAFLQQASYITGG-----VHHKPQQ 201 (293)
Q Consensus 162 ifaAqk~~I~Id-v~~L~~~e---------------------------------~~iLqQa~~~T~G-----~Y~~~~~ 201 (293)
+..|++.+|.|+ ++.+|... -.+|+++++.||| .|+.+.+
T Consensus 151 a~~l~~~gI~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~ 229 (565)
T 1jey_B 151 IHSLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSE 229 (565)
T ss_dssp HHHHHHTTEEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHH
T ss_pred HHHHHhcCcEEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHH
Confidence 999999999999 88775320 1259999999999 8887653
No 20
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.80 E-value=1.9e-05 Score=66.70 Aligned_cols=161 Identities=11% Similarity=0.050 Sum_probs=98.5
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (293)
+--+++|||.|..|... ++..+.+.+..|+..+- ...-+++||... +.++.++|...... . +.
T Consensus 5 ~~div~vlD~SgSm~~~---~~~~~k~~~~~~~~~l~--~~~~~v~vv~f~-~~~~~~~~l~~~~~-------~----~~ 67 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPH---DFRRMKEFVSTVMEQLK--KSKTLFSLMQYS-EEFRIHFTFKEFQN-------N----PN 67 (194)
T ss_dssp CEEEEEEEECCTTSCHH---HHHHHHHHHHHHHHHHC--CTTEEEEEEEES-SSEEEEECHHHHHH-------S----CC
T ss_pred CeeEEEEEeCCCCCCHH---HHHHHHHHHHHHHHhcC--CCCeEEEEEEec-CCceEEEecCCcCC-------H----HH
Confidence 44689999999998654 46666676777776654 456789999886 45677777543110 0 01
Q ss_pred HHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC-------C--CCCCchhHHHHHHHHH
Q 022678 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-------G--SPDGPEQYVAIMNAIF 163 (293)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR-------~--S~D~~~qYi~lmN~if 163 (293)
+.+.|..+ ... .+.+.+..||..|+..+..... +......| + +.|+. .+...+.
T Consensus 68 ~~~~i~~l----~~~--------~g~T~~~~aL~~a~~~l~~~~~-~~r~~~~~~iillTDG~~~~d~~----~~~~~~~ 130 (194)
T 1mf7_A 68 PRSLVKPI----TQL--------LGRTHTATGIRKVVRELFNITN-GARKNAFKILVVITDGEKFGDPL----GYEDVIP 130 (194)
T ss_dssp HHHHHTTC----CCC--------CSCBCHHHHHHHHHHTTTSGGG-TCCTTSEEEEEEEESSCCBSCSS----CGGGTHH
T ss_pred HHHHHHhC----cCC--------CCCchHHHHHHHHHHHhcCccc-CCCCCCCeEEEEEcCCCCCCCch----hhHHHHH
Confidence 33333222 000 1356788888888754432211 11011123 1 11322 1234577
Q ss_pred HHHcCCeeEEEEEcCCcC-----hHHHHHHHhhc-CCeeeeeCCcchHHH
Q 022678 164 SAQRSMVPIDSCYLGAQN-----SAFLQQASYIT-GGVHHKPQQLDGLFQ 207 (293)
Q Consensus 164 aAqk~~I~Idv~~L~~~e-----~~iLqQa~~~T-~G~Y~~~~~~~~l~~ 207 (293)
.+++.+|+|-++++|... ...|+++|..+ +|.|+.+.+.+.|.+
T Consensus 131 ~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~l~~ 180 (194)
T 1mf7_A 131 EADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKT 180 (194)
T ss_dssp HHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGG
T ss_pred HHHHCCCEEEEEEecccccccccHHHHHHHhCCCCcccEEEeCCHHHHHH
Confidence 889999999999997432 58999999996 478888887666543
No 21
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.65 E-value=6.6e-07 Score=75.44 Aligned_cols=155 Identities=9% Similarity=-0.018 Sum_probs=98.3
Q ss_pred CCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHH
Q 022678 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (293)
Q Consensus 12 ~~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~ 91 (293)
.+..+++|||.|..|.. .++..+-+.+..|+... ..+..+++||.......++++|...+. .
T Consensus 4 ~~~~vv~vlD~SgSM~~---~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~~~~~~~~~-------------~ 65 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAV---ARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQVLLQPSRSL-------------T 65 (189)
T ss_dssp SCCEEEEEEECCTTSCC-----CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCCBCTTTCSCH-------------H
T ss_pred CCeEEEEEEECCCCCCc---hHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCceEecCCCCCH-------------H
Confidence 46689999999999953 46777777777776543 478889999998865667777754322 1
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCC---CCchhH-------H-
Q 022678 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSP---DGPEQY-------V- 156 (293)
Q Consensus 92 ~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~---D~~~qY-------i- 156 (293)
.+.+.|..+ .. .+.+.+..||..|+..+.+... ....| .|. +.+..+ .
T Consensus 66 ~~~~~i~~l----~~---------~g~T~~~~al~~a~~~l~~~~~----~~~~~~ivliTDG~~~~~~~~~~~~~~~~~ 128 (189)
T 2x31_A 66 QTKRQLQGL----PG---------GGGTPLASGMEMAMVTAKQARS----RGMTPTIALLTDGRGNIALDGTANRELAGE 128 (189)
T ss_dssp HHHHHHHHC----CC---------CBCCCCHHHHHHHHHHHHTCTT----TCSSEEEEECCBSCCSSCCTHHHHHGGGTC
T ss_pred HHHHHHhcC----CC---------CCCCCHHHHHHHHHHHHHhccC----CCCceEEEEECCCCCCCCCCccccccchhH
Confidence 233333322 11 1356788999999887765311 11122 222 111000 0
Q ss_pred HHHHHHHHHHcCCeeEEEEEcCCcChHHHHHHHhhcCCeeeeeCC
Q 022678 157 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ 201 (293)
Q Consensus 157 ~lmN~ifaAqk~~I~Idv~~L~~~e~~iLqQa~~~T~G~Y~~~~~ 201 (293)
.+.+.+..+++.+|+|.++.++..+..+|+++|..|||.|+.+.+
T Consensus 129 ~~~~~~~~~~~~gi~v~~ig~g~~~~~~L~~iA~~~~G~~~~~~~ 173 (189)
T 2x31_A 129 QATKVARAIRASGMPAVIIDTAMRPNPALVDLARTMDAHYIALPR 173 (189)
T ss_dssp CCEEEEECTGGGGSCCTHHHHHHSSCSSSCSTTTEEEESSTTTHH
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHhcCCeEEECCC
Confidence 011234456788899999999755678999999999999998754
No 22
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.37 E-value=0.0014 Score=54.62 Aligned_cols=149 Identities=10% Similarity=0.005 Sum_probs=82.3
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (293)
+--+++|||.|..|-.. ++..+.+.+..|+..+-......+++||... +.+..++|...... . + .+.
T Consensus 17 ~~divfvlD~SgSm~~~---~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~-~~~~~~~~l~~~~~-----~---~-~~~ 83 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQ---NFRLVKQFLHTFLMVLPIGPEEVNNAVVTYS-TDVHLQWDLQSPNA-----V---D-KQL 83 (178)
T ss_dssp CEEEEEEEECCTTTCHH---HHHHHHHHHHHHHHHSCBSTTSEEEEEEEES-SSEEEEECTTSGGG-----S---C-HHH
T ss_pred CeeEEEEEECCCCCCHH---HHHHHHHHHHHHHHhcCCCCCCeEEEEEEeC-CceEEEEeCCCCCc-----c---C-HHH
Confidence 56799999999988543 4666666666666653222345799999877 45677888754220 0 0 022
Q ss_pred HHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCCCCchhHHHHHHHHHHHHcC
Q 022678 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSPDGPEQYVAIMNAIFSAQRS 168 (293)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~D~~~qYi~lmN~ifaAqk~ 168 (293)
+.+.|..+- .. .+.+.+..||..|+..+..... +......+ .|...+..-..+...+..+++.
T Consensus 84 ~~~~i~~l~----~~--------~g~T~~~~aL~~a~~~l~~~~~-g~r~~~~~~iillTDG~~~~~~~~~~~~~~l~~~ 150 (178)
T 2xgg_A 84 AAHAVLDMP----YK--------KGSTNTSDGLKACKQILFTGSR-PGREHVPKLVIGMTDGESDSDFRTVRAAKEIREL 150 (178)
T ss_dssp HHHHHHHCC----CC--------CCCCCHHHHHHHHHHHHHHCCC-TTCTTSCEEEEEEESSCCCHHHHHSHHHHHHHHT
T ss_pred HHHHHHhCC----CC--------CCCccHHHHHHHHHHHhcCccc-CCCCCCCEEEEEEcCCCCCCCccHHHHHHHHHHC
Confidence 444443331 01 1356888999988877644211 01011122 2332221112355678888999
Q ss_pred CeeEEEEEcCCc-ChHHHHH
Q 022678 169 MVPIDSCYLGAQ-NSAFLQQ 187 (293)
Q Consensus 169 ~I~Idv~~L~~~-e~~iLqQ 187 (293)
+|+|.++++|.. +..+|+.
T Consensus 151 gi~v~~igvG~~~~~~~l~~ 170 (178)
T 2xgg_A 151 GGIVTVLAVGHYVAAALVPR 170 (178)
T ss_dssp TCEEEEEECC----------
T ss_pred CCEEEEEEcCCcCCHHHHhc
Confidence 999999999743 4445543
No 23
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.21 E-value=0.0075 Score=51.01 Aligned_cols=166 Identities=13% Similarity=0.036 Sum_probs=98.9
Q ss_pred CCCCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhH
Q 022678 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSL 89 (293)
Q Consensus 10 ~~~~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~ 89 (293)
...+--+++|||.|..|... ++..+.+.+..|++.+-...+.-+++||... ..++..+|.....+ .
T Consensus 18 ~~~~~DivfvlD~S~Sm~~~---~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs-~~~~~~~~l~~~~~-------~--- 83 (199)
T 3zqk_A 18 NSMVLDVAFVLEGSDKIGEA---DFNRSKEFMEEVIQRMDVGQDSIHVTVLQYS-YMVTVEYPFSEAQS-------K--- 83 (199)
T ss_dssp -CCCCEEEEEEECCTTTCHH---HHHHHHHHHHHHHHHSCBSTTSBEEEEEEES-SSEEEEECTTSCCC-------H---
T ss_pred CCCCcCEEEEEECCCCCCHH---HHHHHHHHHHHHHHhcCCCCCceEEEEEEEC-CcccEEEecCCcCC-------H---
Confidence 34456799999999887543 5777777777777776555678899999887 46788888764321 0
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCCCCchhHHHHHHHHHHH
Q 022678 90 CATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSPDGPEQYVAIMNAIFSA 165 (293)
Q Consensus 90 ~~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~D~~~qYi~lmN~ifaA 165 (293)
+.+.++|..+- ..+ ...+.+..||..|+..+..... +......| .|...+..-+ ..
T Consensus 84 -~~~~~~i~~l~----~~g-------g~~T~~~~aL~~a~~~l~~~~~-g~r~~~~~~iillTDG~~~d~v------~~- 143 (199)
T 3zqk_A 84 -GDILQRLREIR----YQG-------GNRTNTGLALRYLSDHSFLVSQ-GDREQAPNLVYMVTGNPASDEI------KR- 143 (199)
T ss_dssp -HHHHHHHHHCC----CCC-------CSCCCHHHHHHHCCCCCTCGGG-TCCTTSCEEEEEEECSCCSSCC------CC-
T ss_pred -HHHHHHHHhCc----CCC-------CCcChHHHHHHHHHHHhhCccc-CCCCCCCeEEEEEeCCCCchHH------HH-
Confidence 23444454331 011 0136777788777664322111 11011122 1221111100 01
Q ss_pred HcCCeeEEEEEcC-CcChHHHHHHHhhcCCeeeeeCCcchHHHHHHH
Q 022678 166 QRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 211 (293)
Q Consensus 166 qk~~I~Idv~~L~-~~e~~iLqQa~~~T~G~Y~~~~~~~~l~~~L~~ 211 (293)
.+.+|+|-++++| ..+...|+++|. . |.++.+.+.+.|.+.+..
T Consensus 144 ~~~~v~v~~iGiG~~~~~~~L~~iA~-~-~~~~~~~~~~~L~~~~~~ 188 (199)
T 3zqk_A 144 LPGDIQVVPIGVGPNANVQELERIGW-P-NAPILIQDFETLPREAPD 188 (199)
T ss_dssp CCTTEEEEEEEESTTCCHHHHHHHHT-T-SCCEEESCTTTHHHHHHH
T ss_pred HhCCCEEEEEEcCCCCCHHHHHHHhC-C-CceEEeCCHHHHHHHHHH
Confidence 1378999999998 568899999998 4 445577888777665543
No 24
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=96.85 E-value=0.014 Score=58.36 Aligned_cols=144 Identities=12% Similarity=0.119 Sum_probs=92.8
Q ss_pred CeEEEEEeCCcccccc----CCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCce---------EEEecCCCCCCCC
Q 022678 14 SLVVVLLDTNPFFWSS----SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC---------DYVYDSSSTGNQS 80 (293)
Q Consensus 14 s~LviIlD~s~~~w~~----~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s---------~~lyp~~~~~~~~ 80 (293)
.-++++||+|+.|-.. .+.+|..+++.+..|+..-...++...+|||....... ..+.|...-.
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~--- 112 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPG--- 112 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCC---
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCC---
Confidence 4599999999999875 57899999999999999999999999999999886542 1222221110
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhh------hhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CCC-
Q 022678 81 VGNGRMPSLCATLLQNLEEFMNKD------EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GSP- 149 (293)
Q Consensus 81 ~~~~~~~~~~~~i~~~L~~l~~~~------~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S~- 149 (293)
...++.|.+++.++ ...+. ...+.|..||..|.-.+... ..+...| .|.
T Consensus 113 ----------~~~ik~l~~l~~~~~~~~~~~~~g~------~~~t~l~daL~~a~~~f~~~----~~k~~~k~IiL~TDg 172 (609)
T 1jey_A 113 ----------AKRILELDQFKGQQGQKRFQDMMGH------GSDYSLSEVLWVCANLFSDV----QFKMSHKRIMLFTNE 172 (609)
T ss_dssp ----------HHHHHHHHTTSHHHHHHHHHHHHCC------SCCCCHHHHHHHHHHHHHTC----SSCEEEEEEEEEESC
T ss_pred ----------HHHHHHHHHHhhcccchhhhhhcCC------CCCCCHHHHHHHHHHHHHhh----chhhcCCEEEEEcCC
Confidence 12344444443210 00111 12467888888887665432 1122344 222
Q ss_pred -CC----chhHHHHHHHHHHHHcCCeeEEEEEcCCc
Q 022678 150 -DG----PEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 180 (293)
Q Consensus 150 -D~----~~qYi~lmN~ifaAqk~~I~Idv~~L~~~ 180 (293)
++ +.........+..|++.+|.|.++.+|..
T Consensus 173 ~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 173 DNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp SCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred CCCCCCchHHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 11 11223566788999999999999999743
No 25
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=96.28 E-value=0.0018 Score=53.94 Aligned_cols=151 Identities=11% Similarity=0.104 Sum_probs=86.3
Q ss_pred CeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCC-CCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022678 14 SLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQL-NQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (293)
Q Consensus 14 s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~-N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (293)
--+++|||.|..|-.. +|..+.+.+..+++.+ .+. -+++||... +.++..+|......
T Consensus 3 ~divfvlD~S~Sm~~~---~~~~~k~~~~~~~~~l---~~~~~rv~vv~fs-~~~~~~~~l~~~~~-------------- 61 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQPD---EFQKILDFMKDVMKKC---SNTSYQFAAVQFS-TSYKTEFDFSDYVK-------------- 61 (179)
T ss_dssp EEEEEEEECBTTCCHH---HHHHHHHHHHHHHHHT---TTSSEEEEEEEES-SSEEEEECHHHHHH--------------
T ss_pred ccEEEEEeCCCCCCHH---HHHHHHHHHHHHHHHh---CCCCeEEEEEEEC-CceeEEEcCcccCC--------------
Confidence 3589999999988543 5667777777777764 344 489999876 45677776542110
Q ss_pred HHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC-------C-CCCCchhHHHHHHHHHH
Q 022678 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-------G-SPDGPEQYVAIMNAIFS 164 (293)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR-------~-S~D~~~qYi~lmN~ifa 164 (293)
.+.+.+++..-... .+.+.+..||..|...+-.... +......| + +.|... .
T Consensus 62 -~~~~~~~~~~i~~~--------~g~T~~~~aL~~a~~~~~~~~~-g~r~~~~~~iillTDG~~~~~~~----------~ 121 (179)
T 1mjn_A 62 -RKDPDALLKHVKHM--------LLLTNTFGAINYVATEVFREEL-GARPDATKVLIIITDGEATDSGN----------I 121 (179)
T ss_dssp -HCCHHHHHTTCCCC--------CBCCCHHHHHHHHHHHTSSGGG-TCCTTSEEEEEEEESSCCSSCSC----------C
T ss_pred -HHHHHHHHHhcccC--------CCCChHHHHHHHHHHHhccccc-CCCCCCCeEEEEEcCCCCCCCcc----------h
Confidence 01122222221110 1356778888777643322111 11011122 1 122211 1
Q ss_pred HHcCCeeEEEEEcCCcCh-----HHHHHHHhhcCCee-eeeCCcchH
Q 022678 165 AQRSMVPIDSCYLGAQNS-----AFLQQASYITGGVH-HKPQQLDGL 205 (293)
Q Consensus 165 Aqk~~I~Idv~~L~~~e~-----~iLqQa~~~T~G~Y-~~~~~~~~l 205 (293)
++..+|+|-++++|.... ..|+++|..++|.| +.+.+.+.|
T Consensus 122 ~~~~~i~i~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~L 168 (179)
T 1mjn_A 122 DAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKL 168 (179)
T ss_dssp GGGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGS
T ss_pred HHHCCCEEEEEEccccccccccHHHHHHHhCCccHhcEEEeCCHHHH
Confidence 267899999999975432 68999999998864 566665544
No 26
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=96.24 E-value=0.0035 Score=66.85 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=96.7
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022678 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (293)
Q Consensus 13 ~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~s~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (293)
+--+++|||.|..|.. .+|..+.+.+..|+..+- ...-+++||... ..++.++|....... . +
T Consensus 130 ~~DIvfvlD~SgSm~~---~~f~~~k~fv~~lv~~~~--~~~~rVglV~Fs-~~~~~~~~lt~~~~~----~---~---- 192 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISS---RNFATMMNFVRAVISQFQ--RPSTQFSLMQFS-NKFQTHFTFEEFRRS----S---N---- 192 (1095)
T ss_dssp CEEEEEEEECCTTSCS---HHHHHHHHHHHHHHHSSC--SSSEEEEEEEES-SSEEEEECSHHHHSC----S---C----
T ss_pred CccEEEEEcCCCCCCh---hHHHHHHHHHHHHHHhcc--ccccEEEEEEEC-CeEEEEecCcccCCH----H---H----
Confidence 3468999999988754 356666666666665543 334589999876 467888887531100 0 0
Q ss_pred HHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCCC----CC-----CCCchhHHHHHHHHH
Q 022678 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR----GS-----PDGPEQYVAIMNAIF 163 (293)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~sR----~S-----~D~~~qYi~lmN~if 163 (293)
+.+.+..+ ... .+.+.+..||..|+..+..... +......| .| .|+. .+...+.
T Consensus 193 l~~ai~~i----~~~--------gG~T~~g~AL~~a~~~lf~~~~-g~R~~~~kviIllTDG~~~~d~~----~~~~~a~ 255 (1095)
T 3k6s_A 193 PLSLLASV----HQL--------QGFTYTATAIQNVVHRLFHASY-GARRDAAKILIVITDGKKEGDSL----DYKDVIP 255 (1095)
T ss_dssp GGGGTTTC----CCC--------CSCBCHHHHHHHHHTTTTSTTT-TCCSSSEEEEEEEESSCCBSCSS----CHHHHHH
T ss_pred HHHHHhhh----hcc--------cCCChHHHHHHHHHHhhccccc-cCCCCCCeEEEEEeCCCcCCCch----hHHHHHH
Confidence 11222111 000 1356788888888765533211 01011122 12 2222 3457888
Q ss_pred HHHcCCeeEEEEEcCCc-----ChHHHHHHHhhcCC-eeeeeCCcchH
Q 022678 164 SAQRSMVPIDSCYLGAQ-----NSAFLQQASYITGG-VHHKPQQLDGL 205 (293)
Q Consensus 164 aAqk~~I~Idv~~L~~~-----e~~iLqQa~~~T~G-~Y~~~~~~~~l 205 (293)
.|++.+|+|-++++|.. +...|+++|..++| .++.+.+.+.|
T Consensus 256 ~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~L 303 (1095)
T 3k6s_A 256 MADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDAL 303 (1095)
T ss_dssp HHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGGG
T ss_pred HHHHCCCEEEEEecccccccccCHHHHHHHHcCCCCceEEEcCCHHHH
Confidence 89999999999999865 67899999999988 55656665443
No 27
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.86 E-value=0.016 Score=51.38 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=38.4
Q ss_pred HHHHHHHcCCeeEEEEEcCCc------ChHHHHHHHhhcCCeeeeeCCcchHHHH
Q 022678 160 NAIFSAQRSMVPIDSCYLGAQ------NSAFLQQASYITGGVHHKPQQLDGLFQY 208 (293)
Q Consensus 160 N~ifaAqk~~I~Idv~~L~~~------e~~iLqQa~~~T~G~Y~~~~~~~~l~~~ 208 (293)
.....|++.+|+|.+++++.. +...|+++|+.|||.|+.+. .+.|.|.
T Consensus 29 ~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~-~~~l~~~ 82 (242)
T 3rag_A 29 EAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQ-PADISAT 82 (242)
T ss_dssp HHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEEC-GGGHHHH
T ss_pred HHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEee-HHHHHHH
Confidence 566788999999999999533 24789999999999999984 4555544
No 28
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.31 E-value=0.048 Score=48.33 Aligned_cols=98 Identities=17% Similarity=0.026 Sum_probs=68.9
Q ss_pred CCCCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCc--eE-EEecCCCCCCCCCCCCCc
Q 022678 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS--CD-YVYDSSSTGNQSVGNGRM 86 (293)
Q Consensus 10 ~~~~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~--s~-~lyp~~~~~~~~~~~~~~ 86 (293)
++.+-.++++||.|..|.. +|..+-..+..++.++-.....++++||...... +. .+-|...+..
T Consensus 131 e~~~~~vvfLVDtSgSM~~----kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~~-------- 198 (242)
T 3rag_A 131 DEVALHLVVCLDTSASMRD----KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEVN-------- 198 (242)
T ss_dssp HHSCEEEEEEEECSGGGTT----THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSCC--------
T ss_pred ccCCCCEEEEEECcccHHH----HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChHH--------
Confidence 3456789999999999973 5888888888888887766779999999988643 43 3335544331
Q ss_pred hhHHHHHHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhhc
Q 022678 87 PSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS 138 (293)
Q Consensus 87 ~~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~ 138 (293)
+...+..+ . . .+.+.|..||..|+.++.+..++
T Consensus 199 ------~~~~l~~L-~----a--------gG~Tplg~AL~~A~~~~~~~~~~ 231 (242)
T 3rag_A 199 ------VAALEAEL-V----A--------RGGTPTGPAIDHAADLLLSHARN 231 (242)
T ss_dssp ------HHHHHHHC-C----C--------CSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHhhC-C----C--------CCCCcHHHHHHHHHHHHHHHhhc
Confidence 23334333 1 1 24678999999999999876653
No 29
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=92.71 E-value=0.061 Score=35.35 Aligned_cols=24 Identities=33% Similarity=0.773 Sum_probs=20.5
Q ss_pred eeEcCCCCeeec----------CCCC--CCCccccc
Q 022678 247 GYICSVCLSIYC----------KHLK--KCSTCGSV 270 (293)
Q Consensus 247 GyvCp~Clsi~C----------~~p~--~C~~C~~~ 270 (293)
-|+|++|+-+|= ++|- .||+||..
T Consensus 4 ~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 499999999997 5776 89999964
No 30
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=92.12 E-value=0.084 Score=44.26 Aligned_cols=26 Identities=27% Similarity=0.652 Sum_probs=21.6
Q ss_pred cceeEcCCCCeeecC-CCCCCCccccc
Q 022678 245 DMGYICSVCLSIYCK-HLKKCSTCGSV 270 (293)
Q Consensus 245 ~~GyvCp~Clsi~C~-~p~~C~~C~~~ 270 (293)
...|+|++|+-||=. .|..||+||..
T Consensus 136 ~~~~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCB
T ss_pred CCeeEeCCCCCeeCCCCCCCCCCCCCC
Confidence 467999999999874 56799999953
No 31
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=91.67 E-value=0.11 Score=42.89 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=27.2
Q ss_pred CcccceeEcCCCCeeecCCCC--CCCcccccccccc
Q 022678 242 NTIDMGYICSVCLSIYCKHLK--KCSTCGSVFGQAQ 275 (293)
Q Consensus 242 ~~~~~GyvCp~Clsi~C~~p~--~C~~C~~~f~~~~ 275 (293)
+.....|.|..|+.+|=...+ .||.||..+...|
T Consensus 127 ~~~~~~y~C~~Cg~~~~~~~~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 127 KVIKWRYVCIGCGRKFSTLPPGGVCPDCGSKVKLIP 162 (165)
T ss_dssp SCCCCCEEESSSCCEESSCCGGGBCTTTCCBEEECC
T ss_pred ccccEEEECCCCCCcccCCCCCCcCCCCCCcceeCC
Confidence 344567999999999987665 8999999876555
No 32
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=90.08 E-value=0.16 Score=34.52 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=20.5
Q ss_pred eeEcCCCCeeecC-----------------CCC--CCCccccc
Q 022678 247 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 270 (293)
Q Consensus 247 GyvCp~Clsi~C~-----------------~p~--~C~~C~~~ 270 (293)
.|+|++|.-+|=. +|. .||+||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 5999999999975 776 89999973
No 33
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=89.96 E-value=0.12 Score=43.95 Aligned_cols=24 Identities=17% Similarity=0.420 Sum_probs=21.0
Q ss_pred eeEcCCCCeeec--CCCCCCCccccc
Q 022678 247 GYICSVCLSIYC--KHLKKCSTCGSV 270 (293)
Q Consensus 247 GyvCp~Clsi~C--~~p~~C~~C~~~ 270 (293)
-|+|++|+-+|= +.|..||+||..
T Consensus 155 ~~~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred eEEECCCCCEeeCCCCCCCCCCCcCC
Confidence 699999999985 578899999984
No 34
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=89.60 E-value=0.18 Score=37.14 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=20.6
Q ss_pred ceeEcCCCCeeecC-----------------CCC--CCCcccc
Q 022678 246 MGYICSVCLSIYCK-----------------HLK--KCSTCGS 269 (293)
Q Consensus 246 ~GyvCp~Clsi~C~-----------------~p~--~C~~C~~ 269 (293)
.-|+|++|.-||=. +|. .||+||.
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 36999999999974 666 8999997
No 35
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=88.18 E-value=0.25 Score=33.47 Aligned_cols=24 Identities=38% Similarity=0.755 Sum_probs=19.6
Q ss_pred eeEcCCCCeeecC-----------------CCC--CCCccccc
Q 022678 247 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 270 (293)
Q Consensus 247 GyvCp~Clsi~C~-----------------~p~--~C~~C~~~ 270 (293)
-|+|++|.-+|=+ +|- .||+||..
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 4999999999973 554 79999975
No 36
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=88.01 E-value=0.24 Score=33.26 Aligned_cols=24 Identities=29% Similarity=0.677 Sum_probs=19.8
Q ss_pred eeEcCCCCeeec-----------------CCCC--CCCccccc
Q 022678 247 GYICSVCLSIYC-----------------KHLK--KCSTCGSV 270 (293)
Q Consensus 247 GyvCp~Clsi~C-----------------~~p~--~C~~C~~~ 270 (293)
-|+|.+|.-+|= ++|. .||+||..
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 499999999997 3666 79999973
No 37
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=87.81 E-value=0.26 Score=42.34 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=20.4
Q ss_pred ceeEcCCCCeeecCC-CCCCCccccc
Q 022678 246 MGYICSVCLSIYCKH-LKKCSTCGSV 270 (293)
Q Consensus 246 ~GyvCp~Clsi~C~~-p~~C~~C~~~ 270 (293)
.-|+|++|+-+|=.. |-.||+||..
T Consensus 170 ~~~~C~~CG~i~~g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHKGEDFEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCB
T ss_pred cEEEECCCCCEEcCcCCCCCCCCCCC
Confidence 469999999998754 4599999974
No 38
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=86.87 E-value=0.35 Score=34.57 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=20.7
Q ss_pred ceeEcCCCCeeecC-----------------CCC--CCCccccc
Q 022678 246 MGYICSVCLSIYCK-----------------HLK--KCSTCGSV 270 (293)
Q Consensus 246 ~GyvCp~Clsi~C~-----------------~p~--~C~~C~~~ 270 (293)
.-|+|++|.-||=. +|. .||+|+..
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred ceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 35999999999973 666 89999983
No 39
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=86.78 E-value=0.33 Score=36.17 Aligned_cols=25 Identities=32% Similarity=0.760 Sum_probs=20.6
Q ss_pred cceeEcCCCCeeec-----------------CCCC--CCCcccc
Q 022678 245 DMGYICSVCLSIYC-----------------KHLK--KCSTCGS 269 (293)
Q Consensus 245 ~~GyvCp~Clsi~C-----------------~~p~--~C~~C~~ 269 (293)
..-|+|.+|.-+|= ++|. .||+||.
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 34699999999997 4565 7999997
No 40
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=86.58 E-value=0.4 Score=32.18 Aligned_cols=24 Identities=33% Similarity=0.768 Sum_probs=19.4
Q ss_pred eeEcCCCCeeecC-----------------CCC--CCCccccc
Q 022678 247 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 270 (293)
Q Consensus 247 GyvCp~Clsi~C~-----------------~p~--~C~~C~~~ 270 (293)
-|+|++|.-+|=+ +|. .||+||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 4999999999963 565 79999973
No 41
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=85.33 E-value=13 Score=38.30 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=34.1
Q ss_pred HHHHHHHcCCeeEEEEEcCCc--ChHHHHHHHhhcCCeeeeeCC
Q 022678 160 NAIFSAQRSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQ 201 (293)
Q Consensus 160 N~ifaAqk~~I~Idv~~L~~~--e~~iLqQa~~~T~G~Y~~~~~ 201 (293)
+....|.+++|.||++..+.. +..-++.++..|||.-+...+
T Consensus 369 ~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~ 412 (810)
T 1pcx_A 369 NFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPG 412 (810)
T ss_dssp HHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEET
T ss_pred HHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCC
Confidence 567788999999999998533 677899999999998666543
No 42
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=84.97 E-value=19 Score=34.83 Aligned_cols=51 Identities=8% Similarity=-0.033 Sum_probs=30.9
Q ss_pred CCCCeEEEEEeCCcccccc-CCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEec
Q 022678 11 DDVSLVVVLLDTNPFFWSS-SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64 (293)
Q Consensus 11 ~~~s~LviIlD~s~~~w~~-~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~ 64 (293)
..+-.++|+||+|.+|... ...++.. .+. ..+-+|....+..+++||+..+
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~-~~~--Aa~l~~~~~~~~d~vglv~Fs~ 417 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNA-SVV--AAAMCMLVARTEKDSHMVAFSD 417 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBH-HHH--HHHHHHHHHHHCSSEEEEEESS
T ss_pred CCCceEEEEEECccccCCCCCCCcHHH-HHH--HHHHHHHHhccCCceEEEEECC
Confidence 4456788999999999865 1123332 222 1122334445677899999875
No 43
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=79.44 E-value=1.7 Score=28.98 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=21.4
Q ss_pred ceeEcCCCCeeecCCCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCKHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~~p~~C~~C~~~f~~~~ 275 (293)
--++||.|.+..-.--..|.-||.. ..-|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~-~lr~ 41 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK-RLRP 41 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC-CCEE
T ss_pred CCccCCCCCCcCCCCceecCCCCCc-cccc
Confidence 3589999999943333699999988 4444
No 44
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=77.95 E-value=1 Score=31.03 Aligned_cols=33 Identities=30% Similarity=0.906 Sum_probs=22.4
Q ss_pred eeeecc-Ccccce-eEcCCCCeeecC--------CCCCCCccc
Q 022678 236 SCFCHK-NTIDMG-YICSVCLSIYCK--------HLKKCSTCG 268 (293)
Q Consensus 236 ~C~CH~-~~~~~G-yvCp~Clsi~C~--------~p~~C~~C~ 268 (293)
.||-.. .+.+.+ |.|+.|...||- .--.||-|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTTC
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCCC
Confidence 466444 444565 999999999992 224677773
No 45
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=77.88 E-value=21 Score=37.28 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=33.7
Q ss_pred HHHHHHHcCCeeEEEEEcCCc--ChHHHHHHHhhcCCeeeeeC
Q 022678 160 NAIFSAQRSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQ 200 (293)
Q Consensus 160 N~ifaAqk~~I~Idv~~L~~~--e~~iLqQa~~~T~G~Y~~~~ 200 (293)
+....|.+++|.||++..+.. +..-++.++..|||.-+...
T Consensus 485 ~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~ 527 (926)
T 1m2v_B 485 NFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYP 527 (926)
T ss_dssp HHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcC
Confidence 567788899999999998533 67889999999999766554
No 46
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=76.65 E-value=1.1 Score=27.32 Aligned_cols=10 Identities=40% Similarity=1.288 Sum_probs=8.0
Q ss_pred eeEcCCCCee
Q 022678 247 GYICSVCLSI 256 (293)
Q Consensus 247 GyvCp~Clsi 256 (293)
||+||.|..-
T Consensus 5 GFiCP~C~~~ 14 (34)
T 3mjh_B 5 GFICPQCMKS 14 (34)
T ss_dssp EEECTTTCCE
T ss_pred ccCCcHHHHH
Confidence 8999988753
No 47
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=74.86 E-value=1.6 Score=33.58 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=26.1
Q ss_pred cceeEcCCCCeeec---CCCCCCCcccccccccc
Q 022678 245 DMGYICSVCLSIYC---KHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 245 ~~GyvCp~Clsi~C---~~p~~C~~C~~~f~~~~ 275 (293)
-.-|.|-.|+-.|+ ..|..||.|+...+..|
T Consensus 65 v~p~~C~~CG~~F~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp ECCCBBTTTCCBCCCCSSCCSSCSSSCCCCBCCC
T ss_pred EECcChhhCcCeecccCCCCCCCcCCCCCccCCc
Confidence 34588999999997 46789999999988777
No 48
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=72.46 E-value=2.6 Score=27.99 Aligned_cols=31 Identities=19% Similarity=0.570 Sum_probs=24.6
Q ss_pred cceeEcCCCCeeec-----------CCCCCCCcccccccccc
Q 022678 245 DMGYICSVCLSIYC-----------KHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 245 ~~GyvCp~Clsi~C-----------~~p~~C~~C~~~f~~~~ 275 (293)
...|.|+.|...|- +-|-.|+.||..|....
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECT
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCc
Confidence 45799999998664 34568999999998766
No 49
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=72.11 E-value=1.8 Score=31.49 Aligned_cols=29 Identities=21% Similarity=0.564 Sum_probs=24.2
Q ss_pred eeEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 247 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 247 GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
-|+|++|...|-. -|-.|..|+..|....
T Consensus 28 ~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~ 70 (85)
T 2lv2_A 28 CHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSP 70 (85)
T ss_dssp TEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHH
T ss_pred CEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHH
Confidence 4999999999883 4568999999998765
No 50
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=70.69 E-value=25 Score=34.09 Aligned_cols=39 Identities=13% Similarity=-0.050 Sum_probs=27.2
Q ss_pred HHHHHHHHcC---CeeEEEEEcCCc------------------ChHHHHHHHhhcCCeee
Q 022678 159 MNAIFSAQRS---MVPIDSCYLGAQ------------------NSAFLQQASYITGGVHH 197 (293)
Q Consensus 159 mN~ifaAqk~---~I~Idv~~L~~~------------------e~~iLqQa~~~T~G~Y~ 197 (293)
+..+..+++. ++++=++.++.. +-.+|+.+++.|+|.|+
T Consensus 476 ~~al~~~r~~~~~~~klv~i~l~~~~~~~~~~~~~~~~~i~g~se~~l~~Ia~~~~G~~~ 535 (535)
T 2nvo_A 476 TVALDQYAQKMGRAPKLIVVGLTATEFSIADPQRRDMLDVVGFDAAAPNVMTAFARGEVL 535 (535)
T ss_dssp HHHHHHHHHHHSCCCEEEEEETTCSCCCCSCTTCSSEEEEEECCTTHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHhhCCCCeEEEEeccCCCcccCCCCCCCceeeeCCCHHHHHHHHHHhCCCcC
Confidence 4555555554 788888888631 12579999999999885
No 51
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=70.42 E-value=4.4 Score=28.73 Aligned_cols=33 Identities=27% Similarity=0.555 Sum_probs=24.8
Q ss_pred cccceeEcCCCCeeecCC---CCCCCcccccccccc
Q 022678 243 TIDMGYICSVCLSIYCKH---LKKCSTCGSVFGQAQ 275 (293)
Q Consensus 243 ~~~~GyvCp~Clsi~C~~---p~~C~~C~~~f~~~~ 275 (293)
...+-|+|+.|...+-.. +..|+-||.+..-..
T Consensus 24 ~~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK~ 59 (70)
T 1twf_L 24 TATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKA 59 (70)
T ss_dssp -CCCCEECSSSCCEECCCTTSTTCCSSSCCCCCBCC
T ss_pred CceEEEECCCCCCcceeCCCCCccCCCCCceEeEec
Confidence 356789999999997654 468999999554443
No 52
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=69.17 E-value=2.4 Score=28.65 Aligned_cols=29 Identities=24% Similarity=0.778 Sum_probs=23.9
Q ss_pred eeEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 247 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 247 GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
-|.|+.|.-.|-. -|=.|..||..|....
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~ 46 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQS 46 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHH
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHH
Confidence 4999999998873 4668999999998654
No 53
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=68.63 E-value=1.1e+02 Score=31.22 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=34.5
Q ss_pred HHHHHHHcCCeeEEEEEcCCc--ChHHHHHHHhhcCCeeeeeCC
Q 022678 160 NAIFSAQRSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQ 201 (293)
Q Consensus 160 N~ifaAqk~~I~Idv~~L~~~--e~~iLqQa~~~T~G~Y~~~~~ 201 (293)
+....+.+++|.||++..+.. +..-++.++..|||.-+...+
T Consensus 358 ~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~ 401 (770)
T 3efo_B 358 SLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNN 401 (770)
T ss_dssp HHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTT
T ss_pred HHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEecC
Confidence 567788999999999998533 678899999999998666554
No 54
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=68.21 E-value=2.7 Score=27.48 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=24.5
Q ss_pred eEcCCCCeeecC-----CC-CCCCcccccccccccCC
Q 022678 248 YICSVCLSIYCK-----HL-KKCSTCGSVFGQAQTQS 278 (293)
Q Consensus 248 yvCp~Clsi~C~-----~p-~~C~~C~~~f~~~~~~~ 278 (293)
|.|=+|...|-. +| ..||.||-+.....+.|
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR~p 40 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKP 40 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCCCC
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCcEEEEEecCC
Confidence 889999998874 45 58999999988777554
No 55
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=68.08 E-value=1.4 Score=28.74 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=21.0
Q ss_pred ceeEcCCCCe-eecC-C---CCCCCcccccccccc
Q 022678 246 MGYICSVCLS-IYCK-H---LKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Cls-i~C~-~---p~~C~~C~~~f~~~~ 275 (293)
.-++||.|.+ -+-. . -.+|..||+.|....
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~ 38 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEENI 38 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcccccc
Confidence 4578999987 3221 1 158999999987655
No 56
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=67.20 E-value=1.1e+02 Score=31.00 Aligned_cols=42 Identities=19% Similarity=0.093 Sum_probs=34.7
Q ss_pred HHHHHHHcCCeeEEEEEcCCc--ChHHHHHHHhhcCCeeeeeCC
Q 022678 160 NAIFSAQRSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQ 201 (293)
Q Consensus 160 N~ifaAqk~~I~Idv~~L~~~--e~~iLqQa~~~T~G~Y~~~~~ 201 (293)
+....+.+++|.||++..+.. +..-++.++..|||.-+...+
T Consensus 354 ~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~ 397 (766)
T 3eh2_A 354 TLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYAS 397 (766)
T ss_dssp HHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTT
T ss_pred HHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCC
Confidence 567788999999999998533 678999999999997766654
No 57
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=67.08 E-value=5.6 Score=25.25 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=22.0
Q ss_pred ccceeEcCCCCeeecC---------------CCCCCCcccccccc
Q 022678 244 IDMGYICSVCLSIYCK---------------HLKKCSTCGSVFGQ 273 (293)
Q Consensus 244 ~~~GyvCp~Clsi~C~---------------~p~~C~~C~~~f~~ 273 (293)
...-|.|+.|...|-. -|-.|..|+..|.+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 3445899999877752 34589999988864
No 58
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=66.97 E-value=2 Score=29.58 Aligned_cols=27 Identities=30% Similarity=0.801 Sum_probs=19.8
Q ss_pred eee-eeccC-cccceeEcCCCCeeecCCC
Q 022678 235 ASC-FCHKN-TIDMGYICSVCLSIYCKHL 261 (293)
Q Consensus 235 a~C-~CH~~-~~~~GyvCp~Clsi~C~~p 261 (293)
..| +|+.. ....-|.||+|...||.+.
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl~ 40 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPYCSLR 40 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSHH
T ss_pred CcCcCCCCCcCCCccccCcCCCCCccChH
Confidence 456 45532 3567899999999999864
No 59
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=66.92 E-value=2 Score=27.35 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=21.5
Q ss_pred eeEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 247 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 247 GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
.|.|+.|...|-. -|-.|+.|+..|....
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 46 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKT 46 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHH
T ss_pred CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHH
Confidence 5889999888762 4568999999887543
No 60
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.01 E-value=2.1 Score=29.11 Aligned_cols=23 Identities=30% Similarity=0.879 Sum_probs=18.0
Q ss_pred eee-eccCcccceeEcCCCCeeecCCC
Q 022678 236 SCF-CHKNTIDMGYICSVCLSIYCKHL 261 (293)
Q Consensus 236 ~C~-CH~~~~~~GyvCp~Clsi~C~~p 261 (293)
.|. |+. ..-|.||+|...||.+.
T Consensus 14 ~C~vC~~---~~kY~CPrC~~~yCSl~ 37 (56)
T 2yqq_A 14 VCVICLE---KPKYRCPACRVPYCSVV 37 (56)
T ss_dssp CCTTTCS---CCSEECTTTCCEESSHH
T ss_pred ccCcCcC---CCeeeCCCCCCCeeCHH
Confidence 454 554 77899999999999753
No 61
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=64.68 E-value=8.2 Score=40.21 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=41.5
Q ss_pred CCCCCeEEEEEeCCccccccC---CccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEec
Q 022678 10 SDDVSLVVVLLDTNPFFWSSS---SLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64 (293)
Q Consensus 10 ~~~~s~LviIlD~s~~~w~~~---~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~ 64 (293)
...+--+++|||.|..|...+ ..|+..+-+.+..|+. .|..++..+++||....
T Consensus 221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld-~L~~~~~drVgLV~Fs~ 277 (893)
T 2ww8_A 221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLID-KITSDSENRVALVTYAS 277 (893)
T ss_dssp TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHH-HHHTSTTCEEEEEEESS
T ss_pred cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHH-HhhcCCCcEEEEEEecC
Confidence 345667999999999997763 2378777777888884 44457899999999875
No 62
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=62.51 E-value=2.8 Score=26.67 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=20.0
Q ss_pred eEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 248 YICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 248 yvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
|.|+.|...|-. -|-.|+.|+..|....
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 43 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKG 43 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHH
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHH
Confidence 678888777652 3457889998887654
No 63
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=61.67 E-value=4.1 Score=27.48 Aligned_cols=30 Identities=30% Similarity=0.669 Sum_probs=23.6
Q ss_pred ceeEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
.-|.|+.|...|-. .|-.|+.|+..|....
T Consensus 13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~ 56 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNS 56 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHH
T ss_pred CCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHH
Confidence 46999999988762 4568999999998654
No 64
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=60.81 E-value=4.2 Score=27.21 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=23.1
Q ss_pred ceeEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
.-|.|+.|...|-. -|-.|+.|+..|....
T Consensus 8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~ 51 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPS 51 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHH
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHH
Confidence 45999999988762 3458999999998653
No 65
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=60.55 E-value=1.5e+02 Score=30.06 Aligned_cols=177 Identities=15% Similarity=0.078 Sum_probs=90.9
Q ss_pred CCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCC---CEEEEEEecCceEEEecCCCCCCCC-----CCC
Q 022678 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLN---QVVVIATGYNSCDYVYDSSSTGNQS-----VGN 83 (293)
Q Consensus 12 ~~s~LviIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N---~l~VIa~~~~~s~~lyp~~~~~~~~-----~~~ 83 (293)
.|-..+.|||++...-+. .+++.+..-|.+-|..-|.| +||+|.... ..-+|.......++ .+.
T Consensus 159 ~pp~yvFvIDvs~~a~~~------g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~--~vh~y~l~~~~~~~qmlvv~dl 230 (751)
T 3eh1_A 159 QPAVYLFVLDVSHNAVEA------GYLTILCQSLLENLDKLPGDSRTRIGFMTFDS--TIHFYNLQEGLSQPQMLIVSDI 230 (751)
T ss_dssp CCCEEEEEEECSHHHHHH------THHHHHHHHHHHHTTTSSCCTTCEEEEEEESS--SEEEEECCTTCSSCEEEEESCT
T ss_pred CCcEEEEEEEccHhhhhh------hHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCC--EEEEEECCCCcccceeeccccc
Confidence 355778899998744332 13444444444555554555 699998763 24456665432100 000
Q ss_pred CC----c-hhH---HHHHHHHHHHHHhhhhhcCCCCCCccccccchHHHHHHHHHHHHHhhh------cCCCC-----CC
Q 022678 84 GR----M-PSL---CATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR------SGLLH-----PQ 144 (293)
Q Consensus 84 ~~----~-~~~---~~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~------~~~~~-----~~ 144 (293)
.+ . +.+ ..+..+.|.+++++-...-.+ .......+..||+.|...+..... ++.++ ..
T Consensus 231 ~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~---~~~~~~~~G~AL~aA~~ll~~~GGrI~~F~sg~pt~GpG~l~ 307 (751)
T 3eh1_A 231 DDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTN---TRETHSALGPALQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQ 307 (751)
T ss_dssp TCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTT---CSCCCCCHHHHHHHHHHHHTTTCEEEEEEECSCCCSSTTCCC
T ss_pred cccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcC---CCCCccchHHHHHHHHHHhhcCCCEEEEEecCCCCCCCCccc
Confidence 00 0 111 011122222222221111000 012356778889888877754210 01111 22
Q ss_pred CC------CCCC------CchhHHHHHHHHHHHHcCCeeEEEEEcCCc--ChHHHHHHHhhcCCeeeeeCC
Q 022678 145 PR------GSPD------GPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQ 201 (293)
Q Consensus 145 sR------~S~D------~~~qYi~lmN~ifaAqk~~I~Idv~~L~~~--e~~iLqQa~~~T~G~Y~~~~~ 201 (293)
.| ++.+ +...| +-+....+.+++|.||++..+.. +..-++.++..|||.-+....
T Consensus 308 ~r~~~~~~~~~ke~~~~~~a~~f--Y~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~ 376 (751)
T 3eh1_A 308 SREDPNQRSSTKVVQHLGPATDF--YKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPS 376 (751)
T ss_dssp CCCCSCGGGGSSSCTTCSCSCSH--HHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTT
T ss_pred cccccccCCCchhhhhhcchHHH--HHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCC
Confidence 22 1111 11111 23567788999999999998533 788899999999997666543
No 66
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=59.56 E-value=6.7 Score=26.96 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=20.7
Q ss_pred eEcCCCCeeecCCCCCCCcccccccccc
Q 022678 248 YICSVCLSIYCKHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 248 yvCp~Clsi~C~~p~~C~~C~~~f~~~~ 275 (293)
-+||.|....= ...||.||....++-
T Consensus 7 r~C~~CgvYTL--k~~CP~CG~~T~~~h 32 (60)
T 2apo_B 7 KKCPKCGLYTL--KEICPKCGEKTVIPK 32 (60)
T ss_dssp EECTTTCCEES--SSBCSSSCSBCBCCC
T ss_pred eeCCCCCCEec--cccCcCCCCcCCCCC
Confidence 47999976554 678999999988775
No 67
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.47 E-value=11 Score=25.06 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=27.9
Q ss_pred cceeEcCCCCeeecCCCCCCCcccccccccccCC
Q 022678 245 DMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQS 278 (293)
Q Consensus 245 ~~GyvCp~Clsi~C~~p~~C~~C~~~f~~~~~~~ 278 (293)
..+|.|+.|.-+--..-..|..|++.-..+..+|
T Consensus 9 ~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s~~~p 42 (53)
T 2d9g_A 9 EGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKP 42 (53)
T ss_dssp CCCEECSSSCCEECSSCSSCSSSCCCCCCCCCCS
T ss_pred CCCcCCCCCccCCCCCCCccCCCCCcCCccccCc
Confidence 3479999999998888899999999876655554
No 68
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=57.90 E-value=3.5 Score=26.51 Aligned_cols=28 Identities=21% Similarity=0.791 Sum_probs=20.1
Q ss_pred eEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 248 YICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 248 yvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
|.|+.|...|-. -|-.|+.|+..|....
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 44 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRD 44 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHH
T ss_pred CcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHH
Confidence 778888877652 2447889998887654
No 69
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=54.57 E-value=5.9 Score=27.60 Aligned_cols=40 Identities=30% Similarity=0.696 Sum_probs=24.2
Q ss_pred eeee-eccCcccceeEcCCCCeeecCCC--CCCCcccccccccc
Q 022678 235 ASCF-CHKNTIDMGYICSVCLSIYCKHL--KKCSTCGSVFGQAQ 275 (293)
Q Consensus 235 a~C~-CH~~~~~~GyvCp~Clsi~C~~p--~~C~~C~~~f~~~~ 275 (293)
..|. |..++.-+||.| +|.-.||..- +.=..|..-|+...
T Consensus 16 ~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~fDyk~~g 58 (64)
T 1wg2_A 16 NRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECSFDFKEVG 58 (64)
T ss_dssp CSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCCCCCSCSC
T ss_pred CcChhhCCcccccCeEe-ecCCEecccCCCccccCCCcchhHHh
Confidence 4555 444556669999 9999999742 22223544444433
No 70
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=53.78 E-value=6.7 Score=23.55 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=7.9
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 10 ~~~C~~C~k~f~ 21 (45)
T 2epq_A 10 PYSCPVCGLRFK 21 (45)
T ss_dssp SSEETTTTEECS
T ss_pred CCcCCCCCcccC
Confidence 477777766665
No 71
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=52.10 E-value=4.8 Score=27.22 Aligned_cols=30 Identities=23% Similarity=0.668 Sum_probs=22.6
Q ss_pred ceeEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
..|.|+.|...|-. -|-.|..|+..|....
T Consensus 16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~ 59 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPA 59 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHH
T ss_pred CCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHH
Confidence 45899999887752 3458999999997654
No 72
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.99 E-value=2.4 Score=30.92 Aligned_cols=30 Identities=20% Similarity=0.476 Sum_probs=23.9
Q ss_pred ceeEcCCCCeeec----------------CCCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYC----------------KHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C----------------~~p~~C~~C~~~f~~~~ 275 (293)
.-|.|+.|...|- +-|-.|..|+..|....
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~ 68 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKA 68 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHH
T ss_pred CCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHH
Confidence 4699999999887 23458999999998654
No 73
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=51.68 E-value=7.5 Score=25.39 Aligned_cols=30 Identities=27% Similarity=0.667 Sum_probs=21.8
Q ss_pred ceeEcCCCCeeecC----------------CCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCK----------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~----------------~p~~C~~C~~~f~~~~ 275 (293)
.-|.|+.|...|-. -|-.|+.|+..|....
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~ 54 (66)
T 2drp_A 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKD 54 (66)
T ss_dssp TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHH
T ss_pred cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHH
Confidence 45899999887652 2347999999987643
No 74
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=51.65 E-value=7 Score=27.23 Aligned_cols=40 Identities=25% Similarity=0.600 Sum_probs=24.3
Q ss_pred eeee-eccCcccceeEcCCCCeeecCCC--CCCCcccccccccc
Q 022678 235 ASCF-CHKNTIDMGYICSVCLSIYCKHL--KKCSTCGSVFGQAQ 275 (293)
Q Consensus 235 a~C~-CH~~~~~~GyvCp~Clsi~C~~p--~~C~~C~~~f~~~~ 275 (293)
..|. |..++.-+||.| +|.-.||..- +.=..|..-|+...
T Consensus 16 ~rC~~C~kkvgl~~f~C-rCg~~FC~~HRy~e~H~C~fDyk~~g 58 (64)
T 1wfh_A 16 NRCTVCRKRVGLTGFMC-RCGTTFCGSHRYPEVHGCTFDFKSAG 58 (64)
T ss_dssp CCCTTTCCCCCTTCEEC-SSSCEECTTTCSTTTTTCCCCCSCCC
T ss_pred CcChhhCCccCccCEEe-ecCCEeccccCCcccCCCCchhhHHH
Confidence 4555 444566679999 8999999642 22223544554443
No 75
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=51.14 E-value=9.3 Score=27.82 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=24.0
Q ss_pred ceeEcCCCCeee-c-------------CCCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIY-C-------------KHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~-C-------------~~p~~C~~C~~~f~~~~ 275 (293)
.-|.|+.|...| - +-|-.|..||..|....
T Consensus 33 ~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~ 76 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLA 76 (96)
T ss_dssp SCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHH
T ss_pred CCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHH
Confidence 459999999999 4 34568999999998654
No 76
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=50.68 E-value=10 Score=26.25 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=25.8
Q ss_pred cceeEcCCCCeeecC---CCCCCCcccccccccccC
Q 022678 245 DMGYICSVCLSIYCK---HLKKCSTCGSVFGQAQTQ 277 (293)
Q Consensus 245 ~~GyvCp~Clsi~C~---~p~~C~~C~~~f~~~~~~ 277 (293)
.+-|+|..|...+-- -+..|+-||-+..-..+.
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RILyK~Rt 54 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRT 54 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCCCCBCCCC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcEEEEEecC
Confidence 456999999998863 257999999988766644
No 77
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=50.61 E-value=3.7 Score=28.89 Aligned_cols=28 Identities=4% Similarity=-0.152 Sum_probs=19.7
Q ss_pred eEcCCCCeeecCCC----CCCCcccccccccc
Q 022678 248 YICSVCLSIYCKHL----KKCSTCGSVFGQAQ 275 (293)
Q Consensus 248 yvCp~Clsi~C~~p----~~C~~C~~~f~~~~ 275 (293)
.+||+|++-.-... -+|+.||..|...-
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLAYRIDD 42 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCccccCCC
Confidence 58999998543222 27999999998653
No 78
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=50.47 E-value=12 Score=27.48 Aligned_cols=42 Identities=17% Similarity=0.483 Sum_probs=24.8
Q ss_pred CceeeeeccCcccc--eeEcCCCCeeecCCC--CCCCcccccccccc
Q 022678 233 FRASCFCHKNTIDM--GYICSVCLSIYCKHL--KKCSTCGSVFGQAQ 275 (293)
Q Consensus 233 ~~a~C~CH~~~~~~--GyvCp~Clsi~C~~p--~~C~~C~~~f~~~~ 275 (293)
+...|+-.++-+.. ||.| +|.-.||..- +.=.-|..-|+...
T Consensus 24 ~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~HRy~e~H~C~fDyK~~g 69 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFEC-RCGNNFCASHRYAEAHGCNYDYKSAG 69 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEEC-TTCCEECTTTCSTGGGTCCSCCSSSC
T ss_pred cCccchhhCCeecccCCeEc-CCCCEecccCCCccCCCCcchhhHHH
Confidence 34567655554444 9999 6999999742 22223334555443
No 79
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=50.36 E-value=14 Score=21.40 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=21.6
Q ss_pred ceeEcCCCCeeecCCCCCCCcccccc
Q 022678 246 MGYICSVCLSIYCKHLKKCSTCGSVF 271 (293)
Q Consensus 246 ~GyvCp~Clsi~C~~p~~C~~C~~~f 271 (293)
.++.||.|-.+--..-+.|..|++..
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 36899999988877778999998753
No 80
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=49.76 E-value=7.7 Score=27.80 Aligned_cols=42 Identities=24% Similarity=0.563 Sum_probs=26.5
Q ss_pred Cceeee-eccCcccceeEcCCCCeeecCCC--CCCCcccccccccc
Q 022678 233 FRASCF-CHKNTIDMGYICSVCLSIYCKHL--KKCSTCGSVFGQAQ 275 (293)
Q Consensus 233 ~~a~C~-CH~~~~~~GyvCp~Clsi~C~~p--~~C~~C~~~f~~~~ 275 (293)
....|+ |..++.-+||.| +|.-.||..- +.=..|..-|+...
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~FCs~HRy~e~H~C~fDyk~~g 68 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGSTFCGTHRYPESHECQFDFKGVA 68 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCEECTTTCSTTTSCCCSCTTSCC
T ss_pred cCccchhhcCcccccceEe-ccCCEeccccCCCcCCCCcCchhHHh
Confidence 345565 444556669999 8999999642 23334655665544
No 81
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=49.33 E-value=4.2 Score=28.81 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=20.3
Q ss_pred eEcCCCCeeecCCC----CCCCcccccccccc
Q 022678 248 YICSVCLSIYCKHL----KKCSTCGSVFGQAQ 275 (293)
Q Consensus 248 yvCp~Clsi~C~~p----~~C~~C~~~f~~~~ 275 (293)
.+||+|+.-.-... -+|+.||..|...-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAFPVRD 40 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCceecCCC
Confidence 58999998554322 27999999998553
No 82
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=49.32 E-value=16 Score=25.42 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=25.9
Q ss_pred ceeEcCCCCeeecCCCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCKHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~~p~~C~~C~~~f~~~~ 275 (293)
-++.||.|-.+--..-+.|-.|++...+..
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~~ 36 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPETY 36 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSSC
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCccc
Confidence 479999999998888899999999977654
No 83
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=49.19 E-value=11 Score=28.91 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=22.5
Q ss_pred ccceeEcCCCCeeec--CCCC-CCCccccccc
Q 022678 244 IDMGYICSVCLSIYC--KHLK-KCSTCGSVFG 272 (293)
Q Consensus 244 ~~~GyvCp~Clsi~C--~~p~-~C~~C~~~f~ 272 (293)
+..-|.|..|...|= +.+. .||.||....
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 455799999999886 3456 8999998744
No 84
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=49.15 E-value=8.6 Score=26.08 Aligned_cols=30 Identities=20% Similarity=0.606 Sum_probs=23.1
Q ss_pred ceeEcCCCCeeecC----------------CCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCK----------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~----------------~p~~C~~C~~~f~~~~ 275 (293)
.-|.|+.|...|-. .+-.|+.|+..|....
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~ 59 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHH
T ss_pred CCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHH
Confidence 45999999987762 2458999999998654
No 85
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=48.74 E-value=8.4 Score=26.89 Aligned_cols=27 Identities=22% Similarity=0.853 Sum_probs=16.1
Q ss_pred eEcCCCCeeecC--------------CCCCCCccccccccc
Q 022678 248 YICSVCLSIYCK--------------HLKKCSTCGSVFGQA 274 (293)
Q Consensus 248 yvCp~Clsi~C~--------------~p~~C~~C~~~f~~~ 274 (293)
|.|+.|...|-. -|-.|+.|+..|...
T Consensus 4 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~ 44 (88)
T 1llm_C 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 44 (88)
T ss_dssp EECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSH
T ss_pred CcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCH
Confidence 667777666642 234677777666543
No 86
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=48.56 E-value=8.6 Score=26.01 Aligned_cols=29 Identities=31% Similarity=0.779 Sum_probs=21.8
Q ss_pred eeEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 247 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 247 GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
.|.|+.|...|-. .|-.|+.|+..|....
T Consensus 29 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 71 (82)
T 2kmk_A 29 PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSS 71 (82)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHH
T ss_pred CeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChH
Confidence 4889999887752 4568999999887643
No 87
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=48.06 E-value=2.3e+02 Score=28.62 Aligned_cols=55 Identities=15% Similarity=0.045 Sum_probs=41.7
Q ss_pred HHHHHHHcCCeeEEEEEcCCc--ChHHHHHHHhhcCCeeeeeCCc--chHHHHHHHhcC
Q 022678 160 NAIFSAQRSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQL--DGLFQYLLTIFG 214 (293)
Q Consensus 160 N~ifaAqk~~I~Idv~~L~~~--e~~iLqQa~~~T~G~Y~~~~~~--~~l~~~L~~~~l 214 (293)
+....|.+++|.||++..+.. +..-|+.+++.|||..+....- ..+.+-|...|.
T Consensus 337 ~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~ 395 (769)
T 2nut_A 337 ALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFT 395 (769)
T ss_dssp HHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTC
T ss_pred HHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHHHHHHHh
Confidence 467788899999999998633 6788999999999988877653 345555555553
No 88
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=47.47 E-value=9.1 Score=26.47 Aligned_cols=30 Identities=20% Similarity=0.744 Sum_probs=22.9
Q ss_pred ceeEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
..|.|+.|...|-. .|-.|+.|+..|....
T Consensus 33 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 76 (90)
T 1a1h_A 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD 76 (90)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHH
T ss_pred CCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHH
Confidence 35899999887763 3458999999998654
No 89
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.84 E-value=6.3 Score=26.04 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=24.7
Q ss_pred cceeEcCCCCeeec-------CCCCCCCcccccccccc
Q 022678 245 DMGYICSVCLSIYC-------KHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 245 ~~GyvCp~Clsi~C-------~~p~~C~~C~~~f~~~~ 275 (293)
..-|.|+.|...|- +-+-.|+.|+..|....
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~~~~ 53 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEA 53 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCCSSSCCCHHHHHTCSCCC
T ss_pred CCCeeCCcccchhCCHHHhCcCCCCCCCCCChhhcCHH
Confidence 34699999988776 34568999999998765
No 90
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=46.42 E-value=8.5 Score=30.92 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.2
Q ss_pred cceeEcCCCCeeecCCCCCCCccccc
Q 022678 245 DMGYICSVCLSIYCKHLKKCSTCGSV 270 (293)
Q Consensus 245 ~~GyvCp~Clsi~C~~p~~C~~C~~~ 270 (293)
-.|-.|+.|..++-.....|+.|+..
T Consensus 45 L~~~rC~~CG~~~~PPr~~Cp~C~s~ 70 (145)
T 3irb_A 45 IIGSKCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp CEEEECTTTCCEEESCCSEETTTTEE
T ss_pred EEEEEeCCCCcEEcCchhhCcCCCCC
Confidence 45889999999999999999999975
No 91
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.39 E-value=9.7 Score=25.81 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=23.1
Q ss_pred ceeEcCCCCeeec-----------------CCCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYC-----------------KHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C-----------------~~p~~C~~C~~~f~~~~ 275 (293)
.-|.|+.|...|- +.+-.|..|+..|....
T Consensus 6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~ 52 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPD 52 (78)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHH
T ss_pred cCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHH
Confidence 4599999998875 23558999999998543
No 92
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=46.26 E-value=15 Score=25.20 Aligned_cols=15 Identities=20% Similarity=0.654 Sum_probs=11.4
Q ss_pred CCCCCcccccccccc
Q 022678 261 LKKCSTCGSVFGQAQ 275 (293)
Q Consensus 261 p~~C~~C~~~f~~~~ 275 (293)
...||+|+..+....
T Consensus 53 ~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 53 KSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCSSSCCCCCSSG
T ss_pred CCcCCCCCCcCCHhh
Confidence 567999998887654
No 93
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=45.81 E-value=10 Score=26.65 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=23.3
Q ss_pred ceeEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
..|.|+.|...|-. .+-.|+.|+..|....
T Consensus 35 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 78 (96)
T 2dmd_A 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSS 78 (96)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHH
T ss_pred CCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHH
Confidence 35999999988852 3568999999998654
No 94
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=45.75 E-value=17 Score=21.53 Aligned_cols=25 Identities=20% Similarity=0.569 Sum_probs=21.4
Q ss_pred ceeEcCCCCeeecCCCCCCCccccc
Q 022678 246 MGYICSVCLSIYCKHLKKCSTCGSV 270 (293)
Q Consensus 246 ~GyvCp~Clsi~C~~p~~C~~C~~~ 270 (293)
.++.|+.|-.+--..-+.|..|++.
T Consensus 7 ~~W~C~~CT~~N~~~~~~Ce~C~~~ 31 (34)
T 3a9j_C 7 AQWNCTACTFLNHPALIRCEQCEMP 31 (34)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCB
T ss_pred CcCCCCCCccccCCCCCeeCCCCCc
Confidence 4799999998888777899999875
No 95
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=45.74 E-value=5.6 Score=29.11 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=23.7
Q ss_pred ceeEcCCCCeeecCCC----CCCCcccccccccccCC
Q 022678 246 MGYICSVCLSIYCKHL----KKCSTCGSVFGQAQTQS 278 (293)
Q Consensus 246 ~GyvCp~Clsi~C~~p----~~C~~C~~~f~~~~~~~ 278 (293)
.-|.||.|..-.=.-+ -.|+-|+..|.--.-.|
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~aggay~~ 62 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKP 62 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEECCSSSS
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEecCCEecc
Confidence 4699999998443333 36999999998765444
No 96
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=44.82 E-value=7.1 Score=26.51 Aligned_cols=30 Identities=30% Similarity=0.652 Sum_probs=22.7
Q ss_pred ceeEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
..|.|+.|...|-. -|-.|+.|+..|....
T Consensus 17 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 60 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHH
T ss_pred CCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHH
Confidence 45899999887762 3457999999998654
No 97
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=44.62 E-value=9.8 Score=26.62 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=21.4
Q ss_pred EcCCCCeeecC-----CCCCCCcccccccccc
Q 022678 249 ICSVCLSIYCK-----HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 249 vCp~Clsi~C~-----~p~~C~~C~~~f~~~~ 275 (293)
-||-|..+.-- .+..|..||+.|..+.
T Consensus 9 KCp~C~niq~VFShA~tvV~C~~Cg~~L~~PT 40 (66)
T 1qxf_A 9 KCPDCEHEQVIFDHPSTIVKCIICGRTVAEPT 40 (66)
T ss_dssp ECTTTCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred ECCCCCCceEEEecCceEEEcccCCCEEeecC
Confidence 49999876553 4579999999998776
No 98
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=44.20 E-value=9.8 Score=29.60 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=7.3
Q ss_pred CCCCCccccccccc
Q 022678 261 LKKCSTCGSVFGQA 274 (293)
Q Consensus 261 p~~C~~C~~~f~~~ 274 (293)
|-.|+.||..|...
T Consensus 78 ~~~C~~C~k~F~~~ 91 (133)
T 2lt7_A 78 RYQCLACGKSFINY 91 (133)
T ss_dssp CEEESSSCCEESSH
T ss_pred cccCCCCCCCcCCH
Confidence 34555555555533
No 99
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=43.71 E-value=14 Score=27.05 Aligned_cols=31 Identities=32% Similarity=0.706 Sum_probs=24.3
Q ss_pred cceeEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 245 DMGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 245 ~~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
...|.|+.|...|-. .|-.|+.|+..|....
T Consensus 64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 108 (124)
T 2dlq_A 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKK 108 (124)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHH
T ss_pred CCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHH
Confidence 456999999988863 4568999999998654
No 100
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=43.65 E-value=14 Score=25.44 Aligned_cols=31 Identities=13% Similarity=0.424 Sum_probs=21.7
Q ss_pred eEcCCCCeeecCCCCCCCcccccccccccCC
Q 022678 248 YICSVCLSIYCKHLKKCSTCGSVFGQAQTQS 278 (293)
Q Consensus 248 yvCp~Clsi~C~~p~~C~~C~~~f~~~~~~~ 278 (293)
..|..|+...-+....||+|+..+....+.+
T Consensus 39 ~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 39 LFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp EEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred eecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 3455566555556678999999998776443
No 101
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=43.04 E-value=11 Score=25.01 Aligned_cols=30 Identities=20% Similarity=0.568 Sum_probs=21.8
Q ss_pred ceeEcC--CCCeeecC--------------CCCCCCcccccccccc
Q 022678 246 MGYICS--VCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp--~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
.-|.|+ .|...|-. -|-.|+.||..|....
T Consensus 18 ~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 63 (73)
T 1f2i_G 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63 (73)
T ss_dssp CCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHH
T ss_pred CccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHH
Confidence 358997 49887752 3557999999987643
No 102
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.60 E-value=15 Score=25.41 Aligned_cols=17 Identities=12% Similarity=0.442 Sum_probs=13.0
Q ss_pred CCCCCcccccccccccC
Q 022678 261 LKKCSTCGSVFGQAQTQ 277 (293)
Q Consensus 261 p~~C~~C~~~f~~~~~~ 277 (293)
...||+|+..+....+.
T Consensus 59 ~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 59 ESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCTTTCCSSCSSSCC
T ss_pred CCcCCCCCCccCHHhcC
Confidence 67899999998865433
No 103
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=42.39 E-value=16 Score=27.36 Aligned_cols=30 Identities=27% Similarity=0.796 Sum_probs=23.8
Q ss_pred ceeEcCCCCeeec------------CCCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYC------------KHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C------------~~p~~C~~C~~~f~~~~ 275 (293)
..|.|+.|...|- +-|-.|+.|+..|....
T Consensus 73 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~~~~ 114 (129)
T 2wbt_A 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTD 114 (129)
T ss_dssp CSEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCSSHH
T ss_pred CCeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCcccCCHH
Confidence 3599999998775 34668999999998654
No 104
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=41.62 E-value=12 Score=25.54 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=15.9
Q ss_pred eEcCCCCeeecCCC-CCCCccccc
Q 022678 248 YICSVCLSIYCKHL-KKCSTCGSV 270 (293)
Q Consensus 248 yvCp~Clsi~C~~p-~~C~~C~~~ 270 (293)
-+||.|+.. .+| ..|+.||..
T Consensus 31 ~~c~~cG~~--~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 31 TECPQCHGK--KLSHHICPNCGYY 52 (60)
T ss_dssp EECTTTCCE--ECTTBCCTTTCBS
T ss_pred eECCCCCCE--eCCceEcCCCCcC
Confidence 359999988 454 689999954
No 105
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=41.40 E-value=11 Score=34.45 Aligned_cols=29 Identities=10% Similarity=0.049 Sum_probs=22.6
Q ss_pred eeEcCCCCeeecCC--CCCCCcccccccccc
Q 022678 247 GYICSVCLSIYCKH--LKKCSTCGSVFGQAQ 275 (293)
Q Consensus 247 GyvCp~Clsi~C~~--p~~C~~C~~~f~~~~ 275 (293)
--.||.|++.|..- ...|++|+..-+-..
T Consensus 278 ~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG~~ 308 (320)
T 3mkr_B 278 VEKCPLSGACYSPEFKGQICKVTTVTEIGKD 308 (320)
T ss_dssp CEECTTTCCEECGGGTTSBCTTTSSBBSSCC
T ss_pred CccCCCCCCeechhhCCCCCCCCcCcccCCc
Confidence 34699999999965 579999998766443
No 106
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=41.40 E-value=21 Score=21.03 Aligned_cols=25 Identities=24% Similarity=0.608 Sum_probs=20.8
Q ss_pred ceeEcCCCCeeecCCCCCCCccccc
Q 022678 246 MGYICSVCLSIYCKHLKKCSTCGSV 270 (293)
Q Consensus 246 ~GyvCp~Clsi~C~~p~~C~~C~~~ 270 (293)
.-+.|+.|...-=.....|..|++.
T Consensus 4 gDW~C~~C~~~Nfa~r~~C~~C~~p 28 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRKRLKCFRCGAD 28 (32)
T ss_dssp SEEECTTTCCEEETTCCBCTTTCCB
T ss_pred CCCCcCcCcCCcChhcceecCCCCc
Confidence 4589999998877888899999864
No 107
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=41.18 E-value=17 Score=25.37 Aligned_cols=30 Identities=27% Similarity=0.647 Sum_probs=21.4
Q ss_pred ceeEcCCCCeeecC----------------CCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCK----------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~----------------~p~~C~~C~~~f~~~~ 275 (293)
.-|.|+.|...|-. .+-.|+.|+..|....
T Consensus 34 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~ 79 (95)
T 2yt9_A 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD 79 (95)
T ss_dssp CSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHH
T ss_pred CCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHH
Confidence 35888888887762 3457888888887554
No 108
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=41.16 E-value=17 Score=26.11 Aligned_cols=30 Identities=20% Similarity=0.644 Sum_probs=19.3
Q ss_pred cccceeEcCCCC------eeecC---CCCCCCccccccc
Q 022678 243 TIDMGYICSVCL------SIYCK---HLKKCSTCGSVFG 272 (293)
Q Consensus 243 ~~~~GyvCp~Cl------si~C~---~p~~C~~C~~~f~ 272 (293)
.+..-||||+|. +-|+. .-|.|..||..=.
T Consensus 13 ~~~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 13 DVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp --CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred ccccceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 456789999998 33332 2367999997543
No 109
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=40.86 E-value=18 Score=21.91 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=9.3
Q ss_pred ceeEcCCCCeeec
Q 022678 246 MGYICSVCLSIYC 258 (293)
Q Consensus 246 ~GyvCp~Clsi~C 258 (293)
.-|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (48)
T 2epr_A 11 KQVACEICGKIFR 23 (48)
T ss_dssp CSEEETTTTEEES
T ss_pred cCeeCCCCCcccC
Confidence 3588888877765
No 110
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=40.80 E-value=16 Score=24.99 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=20.0
Q ss_pred eEcCCCCeeecCCCCCCCcccccccccc
Q 022678 248 YICSVCLSIYCKHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 248 yvCp~Clsi~C~~p~~C~~C~~~f~~~~ 275 (293)
-.|+.|....= ...|+.||....++-
T Consensus 6 r~C~~Cg~YTL--k~~CP~CG~~t~~ah 31 (60)
T 2aus_D 6 RKCPKCGRYTL--KETCPVCGEKTKVAH 31 (60)
T ss_dssp EECTTTCCEES--SSBCTTTCSBCEESS
T ss_pred eECCCCCCEEc--cccCcCCCCccCCCC
Confidence 46999976543 678999999887764
No 111
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=40.50 E-value=4.1 Score=30.66 Aligned_cols=36 Identities=22% Similarity=0.572 Sum_probs=29.2
Q ss_pred eeEcCCCCeeecCCCCCCCcccccccccccCCCCCc
Q 022678 247 GYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPS 282 (293)
Q Consensus 247 GyvCp~Clsi~C~~p~~C~~C~~~f~~~~~~~~~~~ 282 (293)
.|.|=.||++.=...-.|++|+-.|....+-+..|+
T Consensus 47 HYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~PS 82 (99)
T 2ko5_A 47 HYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAPT 82 (99)
T ss_dssp CEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTSCC
T ss_pred hhhHHHHHHHHHhhccCCcccCCcCCcceecCcCCC
Confidence 599999999999999999999998876654333343
No 112
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=40.25 E-value=23 Score=30.73 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=31.0
Q ss_pred eeeeeccCcccceeEcCCCCeeecC--------C--CCCCCcccccccccc
Q 022678 235 ASCFCHKNTIDMGYICSVCLSIYCK--------H--LKKCSTCGSVFGQAQ 275 (293)
Q Consensus 235 a~C~CH~~~~~~GyvCp~Clsi~C~--------~--p~~C~~C~~~f~~~~ 275 (293)
..|.=.+.++..|..|+.|...+-. - ...||.|+..+.-..
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 4566667888889999999887652 1 358999999877554
No 113
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=40.11 E-value=14 Score=26.82 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=21.1
Q ss_pred eeEcCCCCeeecC--------------CCCCCCccccccccc
Q 022678 247 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQA 274 (293)
Q Consensus 247 GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~ 274 (293)
.|.|+.|...|-. .+-.|+.|+..|...
T Consensus 37 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 78 (110)
T 2csh_A 37 PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWR 78 (110)
T ss_dssp SEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCH
T ss_pred CccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCH
Confidence 4899999887763 234799999988754
No 114
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.96 E-value=38 Score=23.90 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=29.6
Q ss_pred eeeeeccCcccceeEcCCCCeeecC--------CC--CCCCcccccccccc
Q 022678 235 ASCFCHKNTIDMGYICSVCLSIYCK--------HL--KKCSTCGSVFGQAQ 275 (293)
Q Consensus 235 a~C~CH~~~~~~GyvCp~Clsi~C~--------~p--~~C~~C~~~f~~~~ 275 (293)
..|.-.+.++..|..|+.|.-.|-. -. ..||.|+..+....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 3465555666679999998887652 22 67999999887654
No 115
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=39.96 E-value=5.8 Score=29.20 Aligned_cols=32 Identities=19% Similarity=0.498 Sum_probs=23.9
Q ss_pred ccceeEcCCCCee---ecCC-------CCCCCcccccccccc
Q 022678 244 IDMGYICSVCLSI---YCKH-------LKKCSTCGSVFGQAQ 275 (293)
Q Consensus 244 ~~~GyvCp~Clsi---~C~~-------p~~C~~C~~~f~~~~ 275 (293)
.+.-|-||.|... -|++ ...|.+||..|....
T Consensus 20 L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i 61 (85)
T 1wii_A 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPI 61 (85)
T ss_dssp CSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEEC
T ss_pred CCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEecc
Confidence 3556999999865 5554 268999999997654
No 116
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=39.85 E-value=13 Score=26.65 Aligned_cols=41 Identities=22% Similarity=0.620 Sum_probs=26.1
Q ss_pred ceeee-eccCcccceeEcCCCCeeecCCC--CCCCcccccccccc
Q 022678 234 RASCF-CHKNTIDMGYICSVCLSIYCKHL--KKCSTCGSVFGQAQ 275 (293)
Q Consensus 234 ~a~C~-CH~~~~~~GyvCp~Clsi~C~~p--~~C~~C~~~f~~~~ 275 (293)
...|+ |-.++.-+||.|. |...||..- +.=..|..-|+...
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~g 68 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEA 68 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTS
T ss_pred CCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhc
Confidence 34565 4455666799999 999999742 22334555555444
No 117
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=39.84 E-value=14 Score=26.54 Aligned_cols=30 Identities=30% Similarity=0.761 Sum_probs=21.8
Q ss_pred ceeEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
..|.|+.|...|-. .+-.|..|+..|....
T Consensus 44 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 87 (106)
T 2ee8_A 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSR 87 (106)
T ss_dssp CCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHH
T ss_pred CCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHH
Confidence 35888888877752 3568999998887543
No 118
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=39.65 E-value=12 Score=27.96 Aligned_cols=18 Identities=0% Similarity=-0.121 Sum_probs=13.2
Q ss_pred CCCCCcccccccccccCC
Q 022678 261 LKKCSTCGSVFGQAQTQS 278 (293)
Q Consensus 261 p~~C~~C~~~f~~~~~~~ 278 (293)
...||.|+..|....+.|
T Consensus 63 ~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 63 SPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp CSBCSSSCCBCCTTSSEE
T ss_pred CCCCCCCCCCCChhhceE
Confidence 468999999988654443
No 119
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=39.60 E-value=11 Score=27.38 Aligned_cols=24 Identities=17% Similarity=0.509 Sum_probs=13.1
Q ss_pred eeEcCCCCeeecCCCCCCCcccccc
Q 022678 247 GYICSVCLSIYCKHLKKCSTCGSVF 271 (293)
Q Consensus 247 GyvCp~Clsi~C~~p~~C~~C~~~f 271 (293)
.|.|+.|.+-|=... .||.||..+
T Consensus 18 ~~~C~~C~~~~~~~a-fCPeCgq~L 41 (81)
T 2jrp_A 18 TAHCETCAKDFSLQA-LCPDCRQPL 41 (81)
T ss_dssp EEECTTTCCEEEEEE-ECSSSCSCC
T ss_pred ceECccccccCCCcc-cCcchhhHH
Confidence 344666666554444 555555554
No 120
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=38.87 E-value=21 Score=23.68 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=25.4
Q ss_pred cceeEcCCCCeeecCCCCCCCcccccccccc
Q 022678 245 DMGYICSVCLSIYCKHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 245 ~~GyvCp~Clsi~C~~p~~C~~C~~~f~~~~ 275 (293)
+-+|.||.|-.+--..-+.|..|++......
T Consensus 8 ~~~W~Cp~CTf~N~p~~~~CemC~~prp~~~ 38 (52)
T 2crc_A 8 PVGWQCPGCTFINKPTRPGCEMCCRARPEAY 38 (52)
T ss_dssp SSSBCCTTTCCCBCTTCSSCSSSCCCCCTTS
T ss_pred CCCccCCCcccccCCCCCeeCCCCCcCCccc
Confidence 3479999999888777789999999876553
No 121
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=38.70 E-value=13 Score=34.09 Aligned_cols=27 Identities=11% Similarity=-0.298 Sum_probs=21.7
Q ss_pred eeEcCCCCeeecCC--CCCCCcccccccc
Q 022678 247 GYICSVCLSIYCKH--LKKCSTCGSVFGQ 273 (293)
Q Consensus 247 GyvCp~Clsi~C~~--p~~C~~C~~~f~~ 273 (293)
--.||.|++.|..- ...|++|+..-+-
T Consensus 287 ~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG 315 (325)
T 3mv2_A 287 SVSDPLTGSKYVITEKDKIDRIAMISKIG 315 (325)
T ss_dssp EEECTTTCCEEEGGGTTSBCSSSSCBBTT
T ss_pred CccCCCCCCeechhhCCCCCCCCcCcccC
Confidence 45699999999964 5799999987653
No 122
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=38.60 E-value=13 Score=39.28 Aligned_cols=38 Identities=21% Similarity=0.549 Sum_probs=26.2
Q ss_pred eeeeecc----CcccceeEcCCCCe-ee---------cCCC-CCCCccccccc
Q 022678 235 ASCFCHK----NTIDMGYICSVCLS-IY---------CKHL-KKCSTCGSVFG 272 (293)
Q Consensus 235 a~C~CH~----~~~~~GyvCp~Cls-i~---------C~~p-~~C~~C~~~f~ 272 (293)
..|+|-+ ..+.-.|+||.|.- -| +++| ..||.||+.+.
T Consensus 486 lVAy~LgITeVDPl~phy~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~~~ 538 (1041)
T 3f2b_A 486 FVATMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYK 538 (1041)
T ss_dssp HHHHHTTSCSCCCSCSEEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCBCE
T ss_pred HHHHHhcCCCcCCCcccccCccccccccccccccccccCCccccCcccccccc
Confidence 4577775 23345899999983 22 2456 59999999765
No 123
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=37.68 E-value=9.1 Score=26.88 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=19.8
Q ss_pred eEcCCCCeeecCCC----CCCCcccccccccc
Q 022678 248 YICSVCLSIYCKHL----KKCSTCGSVFGQAQ 275 (293)
Q Consensus 248 yvCp~Clsi~C~~p----~~C~~C~~~f~~~~ 275 (293)
.+||+|+.-.-... -+|+.||..|...-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIKD 40 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 58999998544222 27999999997653
No 124
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=37.43 E-value=23 Score=23.68 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=18.8
Q ss_pred ceeEcCC--CCeeecC--------------CCCCCCcccccc
Q 022678 246 MGYICSV--CLSIYCK--------------HLKKCSTCGSVF 271 (293)
Q Consensus 246 ~GyvCp~--Clsi~C~--------------~p~~C~~C~~~f 271 (293)
.-|.|+. |...|-. -|-.|..|+..|
T Consensus 37 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F 78 (79)
T 2dlk_A 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78 (79)
T ss_dssp CCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred CCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence 3588888 8877762 456788888776
No 125
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=37.30 E-value=13 Score=24.82 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=21.5
Q ss_pred CcccceeEcCCCCeeec--C--CCCCCCccccccc
Q 022678 242 NTIDMGYICSVCLSIYC--K--HLKKCSTCGSVFG 272 (293)
Q Consensus 242 ~~~~~GyvCp~Clsi~C--~--~p~~C~~C~~~f~ 272 (293)
++...-..||.|.+..= . -.-.|..|+.+..
T Consensus 13 ki~~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~~ 47 (55)
T 2k4x_A 13 KLVRKHRFCPRCGPGVFLAEHADRYSCGRCGYTEF 47 (55)
T ss_dssp CCCCSSCCCTTTTTTCCCEECSSEEECTTTCCCEE
T ss_pred EEEEccccCcCCCCceeEeccCCEEECCCCCCEEE
Confidence 45556789999998331 1 2358999999864
No 126
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=37.13 E-value=10 Score=26.66 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=19.7
Q ss_pred eEcCCCCeeecCCC----CCCCcccccccccc
Q 022678 248 YICSVCLSIYCKHL----KKCSTCGSVFGQAQ 275 (293)
Q Consensus 248 yvCp~Clsi~C~~p----~~C~~C~~~f~~~~ 275 (293)
.+||+|+.-.--.. -+|+.||..|...-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAYPIRD 40 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEEEEET
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEecCcC
Confidence 58999997544221 37999999987553
No 127
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=36.70 E-value=9.5 Score=26.78 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=19.7
Q ss_pred eEcCCCCeeecCCC----CCCCcccccccccc
Q 022678 248 YICSVCLSIYCKHL----KKCSTCGSVFGQAQ 275 (293)
Q Consensus 248 yvCp~Clsi~C~~p----~~C~~C~~~f~~~~ 275 (293)
.+||+|+.-.-... -+|+.||..|...-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAYPIKD 40 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 58999998543222 27999999998553
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=36.69 E-value=12 Score=32.23 Aligned_cols=16 Identities=19% Similarity=-0.041 Sum_probs=11.6
Q ss_pred CCCCcccccccccccC
Q 022678 262 KKCSTCGSVFGQAQTQ 277 (293)
Q Consensus 262 ~~C~~C~~~f~~~~~~ 277 (293)
..||+|+..|....+.
T Consensus 244 ~~cP~~~~~~~~~~l~ 259 (281)
T 2c2l_A 244 HFNPVTRSPLTQEQLI 259 (281)
T ss_dssp SSCTTTCCCCCGGGCE
T ss_pred CCCcCCCCCCchhcCc
Confidence 3499999998755443
No 129
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.82 E-value=16 Score=25.29 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=20.9
Q ss_pred EcCCCCeeecC-----CCCCCCcccccccccc
Q 022678 249 ICSVCLSIYCK-----HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 249 vCp~Clsi~C~-----~p~~C~~C~~~f~~~~ 275 (293)
-||-|..+.-- ....|..|++.|..+.
T Consensus 17 kCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PT 48 (63)
T 3j20_W 17 KCIDCGNEQIVFSHPATKVRCLICGATLVEPT 48 (63)
T ss_dssp ECSSSCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred ECCCCCCeeEEEecCCeEEEccCcCCEEecCC
Confidence 49999876542 3579999999998766
No 130
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.66 E-value=8.4 Score=28.22 Aligned_cols=13 Identities=15% Similarity=0.608 Sum_probs=7.7
Q ss_pred CCCCc--cccc-cccc
Q 022678 262 KKCST--CGSV-FGQA 274 (293)
Q Consensus 262 ~~C~~--C~~~-f~~~ 274 (293)
..||+ |... +...
T Consensus 49 ~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 49 AYCPQIGCSHTDIRKS 64 (94)
T ss_dssp BCCCSTTCCCCCBCGG
T ss_pred CCCCcCcCcccccCHh
Confidence 47888 7655 4433
No 131
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=35.31 E-value=16 Score=29.33 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.6
Q ss_pred cceeEcCCCCeeecCCCCCCCccccc
Q 022678 245 DMGYICSVCLSIYCKHLKKCSTCGSV 270 (293)
Q Consensus 245 ~~GyvCp~Clsi~C~~p~~C~~C~~~ 270 (293)
-.|..|+.|..++-.....|+.|+..
T Consensus 45 L~~~rC~~CG~~~fPPr~~Cp~C~s~ 70 (145)
T 2gnr_A 45 IIGSKCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp CEEEECTTTCCEEESCCSEETTTTEE
T ss_pred EEEEEECCCCcEEeCCCCCCCCCCCC
Confidence 45889999999998888899999876
No 132
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=34.96 E-value=12 Score=26.95 Aligned_cols=18 Identities=0% Similarity=-0.092 Sum_probs=12.8
Q ss_pred CCCCCcccccccccccCC
Q 022678 261 LKKCSTCGSVFGQAQTQS 278 (293)
Q Consensus 261 p~~C~~C~~~f~~~~~~~ 278 (293)
...||.|+..|....+.|
T Consensus 48 ~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 48 SPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCcCCCChHhcch
Confidence 467999999887655443
No 133
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=34.84 E-value=17 Score=25.81 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=23.5
Q ss_pred ceeEcCCCCeeecCCC----CCCCcccccccccccCC
Q 022678 246 MGYICSVCLSIYCKHL----KKCSTCGSVFGQAQTQS 278 (293)
Q Consensus 246 ~GyvCp~Clsi~C~~p----~~C~~C~~~f~~~~~~~ 278 (293)
.-|.||.|...-=+.. =.|.-|+..|.--.-.|
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~ 61 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTV 61 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCCCCCSSSSS
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCEEeCCcccc
Confidence 3699999987644332 26999999998665443
No 134
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=34.83 E-value=8.1 Score=27.42 Aligned_cols=27 Identities=22% Similarity=0.581 Sum_probs=18.4
Q ss_pred eeEcCCCCeeecC--C--CCCCCcccccccccc
Q 022678 247 GYICSVCLSIYCK--H--LKKCSTCGSVFGQAQ 275 (293)
Q Consensus 247 GyvCp~Clsi~C~--~--p~~C~~C~~~f~~~~ 275 (293)
-+.|| |....=. - ...|+ ||.++...-
T Consensus 4 vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 4 IFRCD-CGRALYSREGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EEEET-TSCCEEEETTCSEEEET-TTEEEECCS
T ss_pred EEECC-CCCEEEEcCCCcEEECC-CCCeeeece
Confidence 47899 9875432 1 25898 999987543
No 135
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=34.29 E-value=13 Score=28.99 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=22.3
Q ss_pred ceeEcCCCCeee----cCCCCCCCcccccccccccCC
Q 022678 246 MGYICSVCLSIY----CKHLKKCSTCGSVFGQAQTQS 278 (293)
Q Consensus 246 ~GyvCp~Clsi~----C~~p~~C~~C~~~f~~~~~~~ 278 (293)
.-|+||.|...- .----.|+-|+..|.--.-.|
T Consensus 59 akytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGAy~~ 95 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKP 95 (116)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEECCSSSS
T ss_pred cCCcCCCCCCceeEecCceeEECCCCCCEEECCCccc
Confidence 369999998721 111136999999998765444
No 136
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.96 E-value=29 Score=20.55 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=8.0
Q ss_pred ceeEcCCCCeeec
Q 022678 246 MGYICSVCLSIYC 258 (293)
Q Consensus 246 ~GyvCp~Clsi~C 258 (293)
.-|.|+.|...|-
T Consensus 11 k~~~C~~C~k~F~ 23 (46)
T 2eq0_A 11 KPYKCHECGKVFR 23 (46)
T ss_dssp CCEECTTTCCEES
T ss_pred CCeECCCCCchhC
Confidence 3477777666554
No 137
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=33.93 E-value=26 Score=25.76 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=21.6
Q ss_pred EcCCCCeeecC-----CCCCCCcccccccccc
Q 022678 249 ICSVCLSIYCK-----HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 249 vCp~Clsi~C~-----~p~~C~~C~~~f~~~~ 275 (293)
-||-|..+.-- ....|..|++.|..+.
T Consensus 38 kCp~C~~~~~VFShA~t~V~C~~CgtvL~~PT 69 (86)
T 3iz6_X 38 KCQGCFNITTVFSHSQTVVVCPGCQTVLCQPT 69 (86)
T ss_dssp ECTTTCCEEEEETTCSSCCCCSSSCCCCSCCC
T ss_pred ECCCCCCeeEEEecCCcEEEccCCCCEeecCC
Confidence 49999886553 3579999999999776
No 138
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=33.89 E-value=15 Score=21.21 Aligned_cols=9 Identities=22% Similarity=0.752 Sum_probs=6.1
Q ss_pred eEcCCCCee
Q 022678 248 YICSVCLSI 256 (293)
Q Consensus 248 yvCp~Clsi 256 (293)
|.||+|++.
T Consensus 4 ~~CpvCk~q 12 (28)
T 2jvx_A 4 FCCPKCQYQ 12 (28)
T ss_dssp EECTTSSCE
T ss_pred ccCcccccc
Confidence 677777653
No 139
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=33.88 E-value=37 Score=23.89 Aligned_cols=15 Identities=13% Similarity=0.441 Sum_probs=11.4
Q ss_pred CCCCCcccccccccc
Q 022678 261 LKKCSTCGSVFGQAQ 275 (293)
Q Consensus 261 p~~C~~C~~~f~~~~ 275 (293)
...||+|...+...+
T Consensus 50 ~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 50 NGLCPACRKPYPEDP 64 (78)
T ss_dssp CSBCTTTCCBCSSCS
T ss_pred CCCCCCCCCccCCCc
Confidence 457889988887665
No 140
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.68 E-value=20 Score=24.29 Aligned_cols=30 Identities=30% Similarity=0.662 Sum_probs=20.7
Q ss_pred ceeEcCCCCeeecC------------------CCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCK------------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~------------------~p~~C~~C~~~f~~~~ 275 (293)
.-|.|+.|...|-. .+-.|..|+..|....
T Consensus 14 k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~ 61 (86)
T 1x6h_A 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61 (86)
T ss_dssp CCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHH
T ss_pred CCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHH
Confidence 45888888876641 2346888888887543
No 141
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=33.50 E-value=20 Score=33.50 Aligned_cols=30 Identities=40% Similarity=0.858 Sum_probs=23.2
Q ss_pred cceeE--cCCCCeeec-----CCCCCCCccccccccc
Q 022678 245 DMGYI--CSVCLSIYC-----KHLKKCSTCGSVFGQA 274 (293)
Q Consensus 245 ~~Gyv--Cp~Clsi~C-----~~p~~C~~C~~~f~~~ 274 (293)
.+||+ |+.|++..- ..+..|+.||..+...
T Consensus 240 ~~g~v~~C~~C~~~~~~~~~~~~~~~C~~cg~~~~~~ 276 (392)
T 3axs_A 240 QFGYIQYCFNCMNREVVTDLYKFKEKCPHCGSKFHIG 276 (392)
T ss_dssp TEEEEEECTTTCCEEEECCGGGCCSBCTTTCSBCEEE
T ss_pred hcceEEECCCCCCeEeecCCCCCCCcCCCCCCcccee
Confidence 46777 999998754 3467899999988754
No 142
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.29 E-value=30 Score=20.45 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=8.2
Q ss_pred ceeEcCCCCeeec
Q 022678 246 MGYICSVCLSIYC 258 (293)
Q Consensus 246 ~GyvCp~Clsi~C 258 (293)
.-|.|+.|...|-
T Consensus 11 ~~~~C~~C~k~f~ 23 (46)
T 2ytk_A 11 KPYKCNECGKVFT 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred CCEeCCcCCCccC
Confidence 3477777766554
No 143
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=33.11 E-value=36 Score=20.31 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=19.9
Q ss_pred cceeEcCCCCeeecCCCCCCCccccc
Q 022678 245 DMGYICSVCLSIYCKHLKKCSTCGSV 270 (293)
Q Consensus 245 ~~GyvCp~Clsi~C~~p~~C~~C~~~ 270 (293)
..-+.|++|.-+-=.--..|..|++.
T Consensus 5 ~g~W~C~~C~~~N~~~~~kC~aC~tp 30 (33)
T 3gj3_B 5 SGTWDCDTCLVQNKPEAVKCVACETP 30 (33)
T ss_dssp -CCEECTTTCCEECTTCSBCTTTCCB
T ss_pred CCceeCCcccCCCccccCEEcccCCC
Confidence 44689999988776667889999763
No 144
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=32.83 E-value=30 Score=20.41 Aligned_cols=12 Identities=25% Similarity=0.852 Sum_probs=7.5
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ema_A 12 RYKCNECGKVFS 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CcCCCCCcchhC
Confidence 477776666554
No 145
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=32.25 E-value=3.1e+02 Score=27.46 Aligned_cols=55 Identities=7% Similarity=0.037 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCeeEEEEEcCCcChHHHHHHHhhcCCeeeeeCCc--chHHHHHHHhc
Q 022678 158 IMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQL--DGLFQYLLTIF 213 (293)
Q Consensus 158 lmN~ifaAqk~~I~Idv~~L~~~e~~iLqQa~~~T~G~Y~~~~~~--~~l~~~L~~~~ 213 (293)
+-.+...+.+++|.+=..+- .....+.+++++...|.+...... ..+++++...+
T Consensus 292 i~ql~~~l~~~~i~~ifavt-~~~~~~y~~l~~~i~~s~v~~l~~dSsni~~li~~~y 348 (690)
T 3fcs_B 292 LGLMTEKLSQKNINLIFAVT-ENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAY 348 (690)
T ss_dssp HHHHHHHHHHTTCEEEEEEE-GGGHHHHHHHHHHSTTCEEEEECTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEEe-CCchhhHHHHHhhcCCceeeeeccccHHHHHHHHHHH
Confidence 45567777888997644444 456678888887777666555433 34666665444
No 146
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=32.18 E-value=30 Score=20.39 Aligned_cols=12 Identities=33% Similarity=0.802 Sum_probs=7.3
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2el4_A 12 PYGCSQCAKTFS 23 (46)
T ss_dssp SEECSSSSCEES
T ss_pred ceECCCCCchhC
Confidence 467776665554
No 147
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=31.79 E-value=25 Score=20.78 Aligned_cols=25 Identities=16% Similarity=0.606 Sum_probs=20.2
Q ss_pred ceeEcCCCCeeecCCCCCCCccccc
Q 022678 246 MGYICSVCLSIYCKHLKKCSTCGSV 270 (293)
Q Consensus 246 ~GyvCp~Clsi~C~~p~~C~~C~~~ 270 (293)
.-++|+.|..+-=.....|..|+..
T Consensus 5 gDW~C~~C~~~Nfa~R~~C~~C~~p 29 (33)
T 2k1p_A 5 NDWQCKTCSNVNWARRSECNMCNTP 29 (33)
T ss_dssp SSCBCSSSCCBCCTTCSBCSSSCCB
T ss_pred CCcccCCCCCccccccccccccCCc
Confidence 3478999988877788899999864
No 148
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.63 E-value=34 Score=20.17 Aligned_cols=13 Identities=38% Similarity=0.920 Sum_probs=8.3
Q ss_pred ceeEcCCCCeeec
Q 022678 246 MGYICSVCLSIYC 258 (293)
Q Consensus 246 ~GyvCp~Clsi~C 258 (293)
.-|.|+.|...|-
T Consensus 11 k~~~C~~C~k~F~ 23 (46)
T 2emh_A 11 RPYICTVCGKAFT 23 (46)
T ss_dssp CSEECTTTCCEES
T ss_pred CCcCCCCCCchhC
Confidence 3477777766555
No 149
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=31.18 E-value=27 Score=25.41 Aligned_cols=27 Identities=22% Similarity=0.653 Sum_probs=21.1
Q ss_pred EcCCCCeeec-----CCCCCCCcccccccccc
Q 022678 249 ICSVCLSIYC-----KHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 249 vCp~Clsi~C-----~~p~~C~~C~~~f~~~~ 275 (293)
-||-|..+.- .....|..||+.|..+.
T Consensus 36 kCp~C~~~q~VFSha~t~V~C~~Cg~~L~~PT 67 (82)
T 3u5c_b 36 KCPGCLNITTVFSHAQTAVTCESCSTILCTPT 67 (82)
T ss_dssp ECTTSCSCEEEESBCSSCCCCSSSCCCCEECC
T ss_pred ECCCCCCeeEEEecCCeEEEccccCCEEeccC
Confidence 4999987554 24589999999998766
No 150
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=31.09 E-value=16 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=18.0
Q ss_pred EcCCCCe--eecCC---CCCCCcccccccccc
Q 022678 249 ICSVCLS--IYCKH---LKKCSTCGSVFGQAQ 275 (293)
Q Consensus 249 vCp~Cls--i~C~~---p~~C~~C~~~f~~~~ 275 (293)
.||.|.+ +.=.. -.+|..||+.+....
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~ 44 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGLVVGDRV 44 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCCEECCSC
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCCEEeccc
Confidence 5888875 22222 268999999887554
No 151
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.00 E-value=34 Score=20.17 Aligned_cols=12 Identities=33% Similarity=0.885 Sum_probs=7.8
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ytj_A 12 PYICAECGKAFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCChhhC
Confidence 477777766554
No 152
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.04 E-value=36 Score=20.03 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=7.5
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2epw_A 12 PCKCTECGKAFC 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeeCCCCCCccC
Confidence 477776665554
No 153
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.97 E-value=35 Score=20.14 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=7.5
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ep2_A 12 PYECSICGKSFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CcCCCCCCcccC
Confidence 477776665554
No 154
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.83 E-value=37 Score=20.02 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=7.2
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2eml_A 12 PYECSVCGKAFS 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeeCCCcCCccC
Confidence 466766665554
No 155
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.71 E-value=22 Score=18.11 Aligned_cols=14 Identities=36% Similarity=0.824 Sum_probs=9.1
Q ss_pred CCCCcccccccccc
Q 022678 262 KKCSTCGSVFGQAQ 275 (293)
Q Consensus 262 ~~C~~C~~~f~~~~ 275 (293)
-.|+.|+..|....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 3 HKCPHCDKKFNQVG 16 (29)
T ss_dssp CCCSSCCCCCCTTT
T ss_pred CcCCCCCcccCCHH
Confidence 35777777776543
No 156
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=29.62 E-value=25 Score=27.93 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=19.4
Q ss_pred cceeEcCCCCeeec--C-----------C----------CCCCCccccccc
Q 022678 245 DMGYICSVCLSIYC--K-----------H----------LKKCSTCGSVFG 272 (293)
Q Consensus 245 ~~GyvCp~Clsi~C--~-----------~----------p~~C~~C~~~f~ 272 (293)
..-+.|..|+..|- + . +..||.||..-.
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 44688888887765 2 3 567999987643
No 157
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.38 E-value=35 Score=22.90 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=10.1
Q ss_pred CCCCCccccccccc
Q 022678 261 LKKCSTCGSVFGQA 274 (293)
Q Consensus 261 p~~C~~C~~~f~~~ 274 (293)
...||+|+..+...
T Consensus 57 ~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 57 FFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCSSSCCCCCCC
T ss_pred CCCCCCCCCcCCcc
Confidence 34799998887643
No 158
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.35 E-value=37 Score=19.98 Aligned_cols=12 Identities=25% Similarity=0.819 Sum_probs=7.5
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2yu8_A 12 PYKCNECGKVFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCcCCchhC
Confidence 477776665554
No 159
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.21 E-value=38 Score=19.99 Aligned_cols=12 Identities=17% Similarity=0.642 Sum_probs=7.1
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2emf_A 12 HFECTECGKAFT 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCchhC
Confidence 466666655544
No 160
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.95 E-value=39 Score=19.88 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=7.4
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2emy_A 12 PYECHECGKAFS 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CcCCCCCCcccC
Confidence 477776665554
No 161
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.94 E-value=39 Score=19.85 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=7.4
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2en8_A 12 SHTCDECGKNFC 23 (46)
T ss_dssp SEECTTTCCEES
T ss_pred CeECCCcCcccC
Confidence 477776665554
No 162
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.74 E-value=39 Score=19.93 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=7.4
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em5_A 12 SHQCHECGRGFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCcCCCccC
Confidence 477776666554
No 163
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=28.65 E-value=23 Score=31.32 Aligned_cols=28 Identities=21% Similarity=0.547 Sum_probs=20.8
Q ss_pred cccceeEcCCCCeeec--------CCCCCCCccccc
Q 022678 243 TIDMGYICSVCLSIYC--------KHLKKCSTCGSV 270 (293)
Q Consensus 243 ~~~~GyvCp~Clsi~C--------~~p~~C~~C~~~ 270 (293)
+...-|.|+.|....- ..|..|+.|+..
T Consensus 130 ~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 130 IVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCC
T ss_pred EEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCC
Confidence 3456799999996531 246899999986
No 164
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=28.63 E-value=48 Score=19.90 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=19.4
Q ss_pred cceeEcCCCCeeecCCCCCCCccccc
Q 022678 245 DMGYICSVCLSIYCKHLKKCSTCGSV 270 (293)
Q Consensus 245 ~~GyvCp~Clsi~C~~p~~C~~C~~~ 270 (293)
...|.|++|+-.-=.-...|..|++.
T Consensus 5 ~G~W~C~~C~v~N~~~~~kC~aCet~ 30 (34)
T 3gj5_B 5 SGSWDCEVCLVQNKADSTKCIACESA 30 (34)
T ss_dssp -CCEECTTTCCEECSSCSBCTTTCCB
T ss_pred CCceECCeeEeECccccCEEcccCCc
Confidence 45689999987665566789999863
No 165
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=28.42 E-value=39 Score=19.83 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=7.1
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em9_A 12 PYNCKECGKSFR 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCccccccC
Confidence 466666665554
No 166
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.31 E-value=41 Score=19.75 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=7.5
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2eme_A 12 PYVCDYCGKAFG 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCChhhC
Confidence 477776665554
No 167
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.27 E-value=20 Score=24.75 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=11.8
Q ss_pred CCCCCcccccccccc
Q 022678 261 LKKCSTCGSVFGQAQ 275 (293)
Q Consensus 261 p~~C~~C~~~f~~~~ 275 (293)
...||+|+..+....
T Consensus 59 ~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 59 KGNCPVCRVPYPFGN 73 (85)
T ss_dssp CBCCTTTCCCCCTTC
T ss_pred CCCCCCCCCcCCHHh
Confidence 578999999887554
No 168
>1bi6_H Bromelain inhibitor VI; cysteine protease inhibitor; NMR {Ananas comosus} SCOP: g.3.12.1 g.3.12.1 PDB: 2bi6_H
Probab=28.20 E-value=19 Score=21.87 Aligned_cols=19 Identities=32% Similarity=0.686 Sum_probs=14.5
Q ss_pred eeecCCCCCCCcccccccc
Q 022678 255 SIYCKHLKKCSTCGSVFGQ 273 (293)
Q Consensus 255 si~C~~p~~C~~C~~~f~~ 273 (293)
--|.+-|..|.+|+..|..
T Consensus 9 dtysdcpgfcktckaefgk 27 (41)
T 1bi6_H 9 DTYSDCPGFCKTCKAEFGK 27 (41)
T ss_dssp CCCSSCCTTCSSEEEETTE
T ss_pred ccccCCchHHHHHHHHhCc
Confidence 3455678899999998864
No 169
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.80 E-value=38 Score=19.94 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=7.7
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ysp_A 12 PYKCEKCGKGYN 23 (46)
T ss_dssp SEEETTTTEEES
T ss_pred CeECCCCCCccC
Confidence 477777666554
No 170
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=27.72 E-value=41 Score=19.84 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=7.4
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2el6_A 12 PYKCSQCEKSFS 23 (46)
T ss_dssp SEECSSSSCEES
T ss_pred CeECCCCCcccC
Confidence 467776665554
No 171
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.64 E-value=41 Score=19.76 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=6.9
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ene_A 12 PYKCNECGKVFR 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCchhC
Confidence 466666655544
No 172
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.59 E-value=42 Score=19.73 Aligned_cols=12 Identities=25% Similarity=0.855 Sum_probs=7.6
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2emp_A 12 PYMCNECGKAFS 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCchhC
Confidence 477777666554
No 173
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=27.55 E-value=24 Score=25.63 Aligned_cols=27 Identities=19% Similarity=0.533 Sum_probs=21.2
Q ss_pred EcCCCCeeecC-----CCCCCCcccccccccc
Q 022678 249 ICSVCLSIYCK-----HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 249 vCp~Clsi~C~-----~p~~C~~C~~~f~~~~ 275 (293)
-||-|..+.-- ....|..||+.|..+.
T Consensus 34 kCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PT 65 (81)
T 2xzm_6 34 KCAQCQNIQMIFSNAQSTIICEKCSAILCKPT 65 (81)
T ss_dssp ECSSSCCEEEEETTCSSCEECSSSCCEEEEEC
T ss_pred ECCCCCCeeEEEecCccEEEccCCCCEEeecC
Confidence 59999876553 3579999999998776
No 174
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.48 E-value=42 Score=19.74 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=7.1
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em7_A 12 PYKCEECGKGFI 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCccchhC
Confidence 466666665544
No 175
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.33 E-value=42 Score=19.80 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=7.6
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2eoo_A 12 PYGCNECGKNFG 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CEEccccCcccC
Confidence 477776666554
No 176
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.26 E-value=43 Score=19.71 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=6.7
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ytg_A 12 PFKCGECGKSYN 23 (46)
T ss_dssp SEECTTTCCEES
T ss_pred CeECCCCCcccC
Confidence 466666555444
No 177
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=27.19 E-value=22 Score=17.95 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=9.5
Q ss_pred CCCcccccccccc
Q 022678 263 KCSTCGSVFGQAQ 275 (293)
Q Consensus 263 ~C~~C~~~f~~~~ 275 (293)
.|..|+..|....
T Consensus 3 ~C~~C~k~f~~~~ 15 (27)
T 1znf_A 3 KCGLCERSFVEKS 15 (27)
T ss_dssp BCSSSCCBCSSHH
T ss_pred cCCCCCCcCCCHH
Confidence 5788888887543
No 178
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.17 E-value=43 Score=19.62 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=7.9
Q ss_pred ceeEcCCCCeeec
Q 022678 246 MGYICSVCLSIYC 258 (293)
Q Consensus 246 ~GyvCp~Clsi~C 258 (293)
..|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2emm_A 11 RPHKCNECGKSFI 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeeCCCCChhhC
Confidence 3477776666554
No 179
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.05 E-value=31 Score=20.32 Aligned_cols=12 Identities=25% Similarity=0.819 Sum_probs=6.8
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2eoe_A 12 PYKCNECGKVFT 23 (46)
T ss_dssp SSEETTTTEECS
T ss_pred CeECCCcChhhC
Confidence 466666655544
No 180
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.02 E-value=45 Score=19.61 Aligned_cols=12 Identities=17% Similarity=0.514 Sum_probs=7.5
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2enc_A 12 PFKCEECGKGFY 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CcCCCCCCCcCC
Confidence 477776666554
No 181
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=26.90 E-value=23 Score=26.12 Aligned_cols=17 Identities=12% Similarity=-0.126 Sum_probs=12.2
Q ss_pred CCCCCcccccccccccC
Q 022678 261 LKKCSTCGSVFGQAQTQ 277 (293)
Q Consensus 261 p~~C~~C~~~f~~~~~~ 277 (293)
...||.|+..|...-+.
T Consensus 57 ~~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIR 73 (98)
T ss_dssp SCBCTTTCSBCCTTTSE
T ss_pred CCCCCCCCCCCChhhce
Confidence 46799999988765433
No 182
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.88 E-value=44 Score=19.63 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=7.3
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ep0_A 12 PYKCDVCHKSFR 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeeCcccCcccC
Confidence 467766665554
No 183
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.83 E-value=30 Score=20.46 Aligned_cols=10 Identities=30% Similarity=1.052 Sum_probs=4.7
Q ss_pred eEcCCCCeee
Q 022678 248 YICSVCLSIY 257 (293)
Q Consensus 248 yvCp~Clsi~ 257 (293)
|.|+.|...|
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2ytn_A 13 YKCNECGKVF 22 (46)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCCee
Confidence 5555444433
No 184
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=26.76 E-value=52 Score=23.71 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=23.1
Q ss_pred CcccceeEcCCCCeeecCCC-CCCCccccc
Q 022678 242 NTIDMGYICSVCLSIYCKHL-KKCSTCGSV 270 (293)
Q Consensus 242 ~~~~~GyvCp~Clsi~C~~p-~~C~~C~~~ 270 (293)
++....+-|--|..+.=+.+ ..||.||-.
T Consensus 10 ~~k~~iLrC~aCf~~t~~~~k~FCp~CGn~ 39 (79)
T 2con_A 10 EARSYILRCHGCFKTTSDMNRVFCGHCGNK 39 (79)
T ss_dssp CCCCEEEECSSSCCEESCSSCCSCSSSCCS
T ss_pred eeeeeeeEecccceECCCcccccccccCcc
Confidence 34456888999999998765 689999974
No 185
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=26.63 E-value=21 Score=27.18 Aligned_cols=16 Identities=31% Similarity=1.030 Sum_probs=11.0
Q ss_pred eeccCc-ccceeEcCCC
Q 022678 238 FCHKNT-IDMGYICSVC 253 (293)
Q Consensus 238 ~CH~~~-~~~GyvCp~C 253 (293)
+|.+.. +.+|++|..|
T Consensus 12 mC~KqpG~~iG~lCekc 28 (109)
T 2k0a_A 12 MCLKQPGVQTGLLCEKC 28 (109)
T ss_dssp BCCCCEEEEECEECGGG
T ss_pred hccCCCcchhhhhhhhc
Confidence 455555 6789997766
No 186
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.50 E-value=45 Score=19.66 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=7.6
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em8_A 12 PYKCVECGKGYK 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECcccCchhC
Confidence 477776666554
No 187
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.34 E-value=45 Score=19.59 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=7.6
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ytd_A 12 PYKCSECGKAFH 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCCeeC
Confidence 477776666554
No 188
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.20 E-value=19 Score=23.80 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=8.8
Q ss_pred CCCCCccccccc
Q 022678 261 LKKCSTCGSVFG 272 (293)
Q Consensus 261 p~~C~~C~~~f~ 272 (293)
...||+|+..|.
T Consensus 56 ~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 56 ANTCPTCRKKIN 67 (69)
T ss_dssp CSSCTTTCCCCC
T ss_pred CCCCCCCCCccC
Confidence 467888887764
No 189
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=26.12 E-value=30 Score=27.66 Aligned_cols=30 Identities=27% Similarity=0.707 Sum_probs=23.0
Q ss_pred ceeEcCCCCeeecC--------------CCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
..|.|+.|...|-. .|-.|+.|+..|....
T Consensus 132 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~ 175 (190)
T 2i13_A 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRD 175 (190)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHH
T ss_pred CCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHH
Confidence 35899999988763 4568999999988654
No 190
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.02 E-value=28 Score=17.68 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=5.0
Q ss_pred eEcCCCCeee
Q 022678 248 YICSVCLSIY 257 (293)
Q Consensus 248 yvCp~Clsi~ 257 (293)
|.|+.|...|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 5555554433
No 191
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.91 E-value=44 Score=19.64 Aligned_cols=12 Identities=17% Similarity=0.573 Sum_probs=7.5
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2en1_A 12 PFKCEECGKRFT 23 (46)
T ss_dssp SEEETTTTEEES
T ss_pred CeeCCCCCcccC
Confidence 477776666554
No 192
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=25.61 E-value=29 Score=25.92 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=12.2
Q ss_pred CCCCCcccccccccc
Q 022678 261 LKKCSTCGSVFGQAQ 275 (293)
Q Consensus 261 p~~C~~C~~~f~~~~ 275 (293)
...||+|+..+....
T Consensus 58 ~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 58 GSYCPSCRYPCFPTD 72 (116)
T ss_dssp CSBCTTTCCBCCGGG
T ss_pred cCcCCCCCCCCCHhh
Confidence 568999999988655
No 193
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=25.53 E-value=16 Score=26.89 Aligned_cols=30 Identities=17% Similarity=0.558 Sum_probs=21.2
Q ss_pred ceeEcCCCCeeecC--------CC-CCCCcccccccccc
Q 022678 246 MGYICSVCLSIYCK--------HL-KKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~--------~p-~~C~~C~~~f~~~~ 275 (293)
....|..|+=.||. .. ..||+|+..+....
T Consensus 34 ~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 34 DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 34556777778884 23 68999999986544
No 194
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=25.38 E-value=32 Score=21.37 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=8.3
Q ss_pred ceeEcCCCCeee
Q 022678 246 MGYICSVCLSIY 257 (293)
Q Consensus 246 ~GyvCp~Clsi~ 257 (293)
..|.||+|...+
T Consensus 8 ~~~~C~~C~~~i 19 (39)
T 2i5o_A 8 DQVPCEKCGSLV 19 (39)
T ss_dssp CEEECTTTCCEE
T ss_pred CCcccccccCcC
Confidence 357888887654
No 195
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=25.27 E-value=18 Score=25.73 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=21.4
Q ss_pred eeEcCCCCeeecCC----CCCCCcccccccccccCC
Q 022678 247 GYICSVCLSIYCKH----LKKCSTCGSVFGQAQTQS 278 (293)
Q Consensus 247 GyvCp~Clsi~C~~----p~~C~~C~~~f~~~~~~~ 278 (293)
-|.||.|...-=+- --.|.-|+..|.--.-.|
T Consensus 27 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~ 62 (73)
T 1ffk_W 27 KYKCPVCGFPKLKRASTSIWVCGHCGYKIAGGAYTP 62 (73)
T ss_pred CccCCCCCCceeEEEEeEEEECCCCCcEEECCCccc
Confidence 59999998632111 136999999998765334
No 196
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.95 E-value=48 Score=19.45 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=7.8
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2en6_A 12 PYGCNECGKTFS 23 (46)
T ss_dssp CEEETTTTEEES
T ss_pred CeECCCCCcccC
Confidence 477777766554
No 197
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.79 E-value=15 Score=18.65 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=9.9
Q ss_pred CCCCcccccccccc
Q 022678 262 KKCSTCGSVFGQAQ 275 (293)
Q Consensus 262 ~~C~~C~~~f~~~~ 275 (293)
-.|..||..|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (26)
T 2lvu_A 3 YVCERCGKRFVQSS 16 (26)
Confidence 35778888887654
No 198
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.90 E-value=50 Score=19.36 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=7.6
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2yso_A 12 SHQCRECGEIFF 23 (46)
T ss_dssp CEECTTTCCEES
T ss_pred CEEccccChhhC
Confidence 477776666554
No 199
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=24.79 E-value=30 Score=17.73 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=9.5
Q ss_pred CCCCcccccccccc
Q 022678 262 KKCSTCGSVFGQAQ 275 (293)
Q Consensus 262 ~~C~~C~~~f~~~~ 275 (293)
-.|..|+..|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (30)
T 1klr_A 3 YQCQYCEFRSADSS 16 (30)
T ss_dssp CCCSSSSCCCSCSH
T ss_pred ccCCCCCCccCCHH
Confidence 35778888877543
No 200
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.70 E-value=27 Score=17.82 Aligned_cols=14 Identities=21% Similarity=0.655 Sum_probs=9.4
Q ss_pred CCCCcccccccccc
Q 022678 262 KKCSTCGSVFGQAQ 275 (293)
Q Consensus 262 ~~C~~C~~~f~~~~ 275 (293)
-.|..|+..|....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (29)
T 1ard_A 3 FVCEVCTRAFARQE 16 (29)
T ss_dssp CBCTTTCCBCSSHH
T ss_pred eECCCCCcccCCHH
Confidence 35778888776543
No 201
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=24.65 E-value=29 Score=17.94 Aligned_cols=14 Identities=21% Similarity=0.657 Sum_probs=9.6
Q ss_pred CCCCcccccccccc
Q 022678 262 KKCSTCGSVFGQAQ 275 (293)
Q Consensus 262 ~~C~~C~~~f~~~~ 275 (293)
-.|..|+..|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (30)
T 1paa_A 3 YACGLCNRAFTRRD 16 (30)
T ss_dssp SBCTTTCCBCSSSH
T ss_pred cCCcccCcccCChH
Confidence 35778888887543
No 202
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.57 E-value=24 Score=24.26 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=22.5
Q ss_pred ceeEcCCCCeeec------------CCCCCCCcccccccccc
Q 022678 246 MGYICSVCLSIYC------------KHLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C------------~~p~~C~~C~~~f~~~~ 275 (293)
.-|.|+.|...|- +.|..|+.|+..|....
T Consensus 16 r~~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~~~~~ 57 (75)
T 2d9k_A 16 RLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKD 57 (75)
T ss_dssp CCEECSSSCCEECHHHHHHHHHHHHHCEEECSSSCCEEETTG
T ss_pred cccCCcccChHhhHHHHHHHHhHcCCCceEcccCCCcCcHHH
Confidence 4688999987654 35678999999877544
No 203
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=24.44 E-value=27 Score=23.50 Aligned_cols=13 Identities=23% Similarity=0.624 Sum_probs=11.1
Q ss_pred CCCCCCccccccc
Q 022678 260 HLKKCSTCGSVFG 272 (293)
Q Consensus 260 ~p~~C~~C~~~f~ 272 (293)
+|..|.|||....
T Consensus 2 iPVRCFTCGkvi~ 14 (55)
T 1ef4_A 2 IPVRCLSCGKPVS 14 (55)
T ss_dssp CSSSCSCTTSCCH
T ss_pred CCeecCCCCCChh
Confidence 6889999998765
No 204
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.31 E-value=32 Score=17.44 Aligned_cols=9 Identities=22% Similarity=0.467 Sum_probs=4.3
Q ss_pred eEcCCCCee
Q 022678 248 YICSVCLSI 256 (293)
Q Consensus 248 yvCp~Clsi 256 (293)
|.|+.|...
T Consensus 3 ~~C~~C~k~ 11 (29)
T 2m0f_A 3 LKCRECGKQ 11 (29)
T ss_dssp EECTTTSCE
T ss_pred ccCCCCCCc
Confidence 455544433
No 205
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=24.31 E-value=26 Score=24.71 Aligned_cols=14 Identities=36% Similarity=0.859 Sum_probs=11.9
Q ss_pred CCCCCCcccccccc
Q 022678 260 HLKKCSTCGSVFGQ 273 (293)
Q Consensus 260 ~p~~C~~C~~~f~~ 273 (293)
+|..|.|||.....
T Consensus 3 iPVRCFTCGkvi~~ 16 (70)
T 1twf_J 3 VPVRCFSCGKVVGD 16 (70)
T ss_dssp CCSBCTTTCCBCTT
T ss_pred CCeecCCCCCChHH
Confidence 68899999988764
No 206
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.25 E-value=31 Score=22.41 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=21.4
Q ss_pred ceeEcCCCCeee-----------c-CCCCCCC-cccccccccc
Q 022678 246 MGYICSVCLSIY-----------C-KHLKKCS-TCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~-----------C-~~p~~C~-~C~~~f~~~~ 275 (293)
.-|.|+.|...| + +.|-.|+ .||..|....
T Consensus 9 ~~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~ 51 (66)
T 2eod_A 9 RTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVARE 51 (66)
T ss_dssp CEEECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEEETT
T ss_pred CCeeccccCCccCHHHHHHHHHHcCCcCccCCcccCcccccHH
Confidence 358899997665 2 3355799 9999887653
No 207
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.92 E-value=37 Score=19.95 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=4.6
Q ss_pred eEcCCCCeee
Q 022678 248 YICSVCLSIY 257 (293)
Q Consensus 248 yvCp~Clsi~ 257 (293)
|.|+.|...|
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2eop_A 13 HECRECGKSF 22 (46)
T ss_dssp CBCTTTCCBC
T ss_pred eeCCCCCchh
Confidence 5555444433
No 208
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.72 E-value=44 Score=22.99 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=17.8
Q ss_pred eeeee--ccCcccceeEcCCCCeeecC
Q 022678 235 ASCFC--HKNTIDMGYICSVCLSIYCK 259 (293)
Q Consensus 235 a~C~C--H~~~~~~GyvCp~Clsi~C~ 259 (293)
..|.- .++...++|.|..|.-.||.
T Consensus 13 ~~Cs~~~Ck~~~ll~f~C~~C~~~FC~ 39 (63)
T 1x4v_A 13 NKCERAGCRQREMMKLTCERCSRNFCI 39 (63)
T ss_dssp CCCCSTTCCCCCSSCCBCSSSCCBCCH
T ss_pred CCCCccCCCCCCccceECCCCCcccCc
Confidence 34553 33445679999999999994
No 209
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.66 E-value=33 Score=17.51 Aligned_cols=10 Identities=30% Similarity=0.826 Sum_probs=4.8
Q ss_pred CCcccccccc
Q 022678 264 CSTCGSVFGQ 273 (293)
Q Consensus 264 C~~C~~~f~~ 273 (293)
|+.|+..|..
T Consensus 5 C~~C~k~f~~ 14 (29)
T 1rik_A 5 CPECPKRFMR 14 (29)
T ss_dssp CSSSSCEESC
T ss_pred CCCCCchhCC
Confidence 4445555543
No 210
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=23.59 E-value=1.3e+02 Score=22.95 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=27.2
Q ss_pred CCCCCCCCCCeEEEEEeC----------Ccccccc-CCccHHHHHHHHHHHHHH
Q 022678 5 PSKLYSDDVSLVVVLLDT----------NPFFWSS-SSLSFSQFLTHVLAFLNA 47 (293)
Q Consensus 5 ~~~~~~~~~s~LviIlD~----------s~~~w~~-~~~~l~~~l~~l~~Fln~ 47 (293)
.-+..--+.+.|+|++|+ |..+|.. +|.....+=..+..|+..
T Consensus 65 ifS~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 65 IRSPKSLEGSFVLVLLDFFDEETSVDLLDRGFWYLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp CCCCTTCCSCEEEEEESSCCHHHHHHHHHTTCEEEESCCCHHHHHHHHHHHHHH
T ss_pred hcCCCCCCcccEEEEehhhchHHHHHHHhCCceeEeccCcHHHHHHHHHHHHhc
Confidence 334444556789999997 5567765 888755444445555553
No 211
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.52 E-value=35 Score=17.40 Aligned_cols=10 Identities=30% Similarity=0.899 Sum_probs=5.2
Q ss_pred eEcCCCCeee
Q 022678 248 YICSVCLSIY 257 (293)
Q Consensus 248 yvCp~Clsi~ 257 (293)
|.|+.|...|
T Consensus 4 ~~C~~C~~~f 13 (30)
T 2m0d_A 4 YQCDYCGRSF 13 (30)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCccc
Confidence 5565554443
No 212
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.44 E-value=54 Score=18.99 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=6.7
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
.|.|+.|...|-
T Consensus 10 ~~~C~~C~k~f~ 21 (44)
T 2emx_A 10 PFGCSCCEKAFS 21 (44)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCcccC
Confidence 466666655443
No 213
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.43 E-value=35 Score=17.36 Aligned_cols=9 Identities=56% Similarity=1.032 Sum_probs=4.5
Q ss_pred eEcCCCCee
Q 022678 248 YICSVCLSI 256 (293)
Q Consensus 248 yvCp~Clsi 256 (293)
|.|+.|...
T Consensus 4 ~~C~~C~k~ 12 (28)
T 2kvf_A 4 YSCSVCGKR 12 (28)
T ss_dssp EECSSSCCE
T ss_pred ccCCCCCcc
Confidence 555554443
No 214
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=23.28 E-value=38 Score=24.37 Aligned_cols=30 Identities=17% Similarity=0.619 Sum_probs=22.1
Q ss_pred ceeEcCCCCeeecC--------------CCCCC--Ccccccccccc
Q 022678 246 MGYICSVCLSIYCK--------------HLKKC--STCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp~Clsi~C~--------------~p~~C--~~C~~~f~~~~ 275 (293)
..|.|+.|...|-. .|-.| +.|+..|....
T Consensus 65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~ 110 (119)
T 2jp9_A 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110 (119)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHH
T ss_pred CCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHH
Confidence 35899999888763 34578 88999887643
No 215
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.24 E-value=33 Score=17.56 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=5.2
Q ss_pred eEcCCCCeee
Q 022678 248 YICSVCLSIY 257 (293)
Q Consensus 248 yvCp~Clsi~ 257 (293)
|.|+.|...|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvg_A 4 YRCPLCRAGC 13 (27)
T ss_dssp EEETTTTEEE
T ss_pred cCCCCCCccc
Confidence 5565555443
No 216
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=23.21 E-value=49 Score=23.56 Aligned_cols=26 Identities=19% Similarity=0.627 Sum_probs=19.7
Q ss_pred eeeee--ccCcccceeEcCCCCeeecCC
Q 022678 235 ASCFC--HKNTIDMGYICSVCLSIYCKH 260 (293)
Q Consensus 235 a~C~C--H~~~~~~GyvCp~Clsi~C~~ 260 (293)
..|.- .++.--++|.|..|.-+||.-
T Consensus 15 ~~Cs~~~C~~~dflpf~C~~C~~~FC~~ 42 (75)
T 1wys_A 15 QHCQVQHCRQRDFLPFVCDGCSGIFCLE 42 (75)
T ss_dssp CCCSCTTTCCCSCCCEECTTTCCEECST
T ss_pred CCcCcccCCCccceeeECcccCcCcCcc
Confidence 45654 445566899999999999963
No 217
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.14 E-value=39 Score=19.90 Aligned_cols=10 Identities=40% Similarity=1.195 Sum_probs=4.5
Q ss_pred CCCccccccc
Q 022678 263 KCSTCGSVFG 272 (293)
Q Consensus 263 ~C~~C~~~f~ 272 (293)
.|..|+..|.
T Consensus 14 ~C~~C~k~f~ 23 (46)
T 2epz_A 14 DCIDCGKAFS 23 (46)
T ss_dssp CCTTTCCCBS
T ss_pred ECCCCCceeC
Confidence 3444444444
No 218
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.02 E-value=25 Score=24.59 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=23.4
Q ss_pred eeeeec-cCcccc---eeEcCCCCeeecCCC--CCCCcccccccccc
Q 022678 235 ASCFCH-KNTIDM---GYICSVCLSIYCKHL--KKCSTCGSVFGQAQ 275 (293)
Q Consensus 235 a~C~CH-~~~~~~---GyvCp~Clsi~C~~p--~~C~~C~~~f~~~~ 275 (293)
..|+-. .++.-. ||.| +|.-.||..- +.=..|.--|+...
T Consensus 16 ~rC~~C~kk~gL~~~egf~C-rCg~~FC~~HRy~e~H~C~fDyk~~g 61 (67)
T 1x4w_A 16 RRCFQCQTKLELVQQELGSC-RCGYVFCMLHRLPEQHDCTFDHMGRG 61 (67)
T ss_dssp TBCSSSCCBCCHHHHHHHCC-SSSCCCCTTTCSTGGGTCSSCSSCSS
T ss_pred CcchhhCCeecccccCceEe-cCCCEehhccCCccccCCcccccccc
Confidence 455544 444444 4999 9999999743 22223544555443
No 219
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.99 E-value=20 Score=25.86 Aligned_cols=28 Identities=18% Similarity=0.478 Sum_probs=17.8
Q ss_pred eeEcCCCCeeec-------------CCCCCCCccccccccc
Q 022678 247 GYICSVCLSIYC-------------KHLKKCSTCGSVFGQA 274 (293)
Q Consensus 247 GyvCp~Clsi~C-------------~~p~~C~~C~~~f~~~ 274 (293)
-|.|+.|...|- +-|-.|..|+..|...
T Consensus 42 ~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~~ 82 (107)
T 1wjp_A 42 AAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSS 82 (107)
T ss_dssp SBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECSSH
T ss_pred CccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhCCH
Confidence 367777776664 2345677777777654
No 220
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=22.78 E-value=39 Score=19.93 Aligned_cols=10 Identities=30% Similarity=0.876 Sum_probs=4.9
Q ss_pred eEcCCCCeee
Q 022678 248 YICSVCLSIY 257 (293)
Q Consensus 248 yvCp~Clsi~ 257 (293)
|.|+.|...|
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2emk_A 13 YECKECGKAF 22 (46)
T ss_dssp CBCSSSCCBC
T ss_pred eECCCCCchh
Confidence 5555554443
No 221
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.77 E-value=38 Score=19.87 Aligned_cols=11 Identities=55% Similarity=1.129 Sum_probs=5.0
Q ss_pred CCCcccccccc
Q 022678 263 KCSTCGSVFGQ 273 (293)
Q Consensus 263 ~C~~C~~~f~~ 273 (293)
.|+.|+..|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eov_A 14 KCSDCGKSFTW 24 (46)
T ss_dssp BCSSSCCBCSS
T ss_pred cCCccChhhCC
Confidence 34444444443
No 222
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.57 E-value=30 Score=24.00 Aligned_cols=21 Identities=24% Similarity=0.760 Sum_probs=14.8
Q ss_pred CCCeeecC--------CCCCCCccccccc
Q 022678 252 VCLSIYCK--------HLKKCSTCGSVFG 272 (293)
Q Consensus 252 ~Clsi~C~--------~p~~C~~C~~~f~ 272 (293)
.|+=.||. ....||+|+..+.
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 32 KCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 35556663 3568999999986
No 223
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=22.46 E-value=83 Score=21.13 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=20.6
Q ss_pred eeEcCCCCeeecCCCCCCCccccc
Q 022678 247 GYICSVCLSIYCKHLKKCSTCGSV 270 (293)
Q Consensus 247 GyvCp~Clsi~C~~p~~C~~C~~~ 270 (293)
-.||=.|.+..-.--+.|..||..
T Consensus 19 k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 19 KKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CEEETTTCCEECTTCSSCTTTCCC
T ss_pred hhhhccccCcCCcccccccCCCCC
Confidence 579999999988777899999954
No 224
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.44 E-value=39 Score=24.69 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=18.3
Q ss_pred eeeee--ccCcccceeEcCCCCeeecC
Q 022678 235 ASCFC--HKNTIDMGYICSVCLSIYCK 259 (293)
Q Consensus 235 a~C~C--H~~~~~~GyvCp~Clsi~C~ 259 (293)
..|.- .++...++|.|..|.-.||.
T Consensus 26 ~~C~~~~Ck~~~~l~f~C~~C~~~FC~ 52 (86)
T 1wfe_A 26 YSCSFKGCTDVELVAVICPYCEKNFCL 52 (86)
T ss_dssp EECCSTTCCCEESSCEECTTTCCEECG
T ss_pred CCCCCcCCCCCCccceECCCCCccccc
Confidence 34653 33445589999999999995
No 225
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=22.22 E-value=20 Score=27.24 Aligned_cols=33 Identities=21% Similarity=0.467 Sum_probs=22.6
Q ss_pred ceeEcCCCCeeecCCC----CCCCcccccccccccCC
Q 022678 246 MGYICSVCLSIYCKHL----KKCSTCGSVFGQAQTQS 278 (293)
Q Consensus 246 ~GyvCp~Clsi~C~~p----~~C~~C~~~f~~~~~~~ 278 (293)
.-|.||.|...-=+-. -.|.-|+.+|.--.-.|
T Consensus 35 aky~CpfCgk~~vKR~a~GIW~C~kCg~~~AGGAy~~ 71 (103)
T 4a17_Y 35 AKYGCPFCGKVAVKRAAVGIWKCKPCKKIIAGGAWEL 71 (103)
T ss_dssp SCEECTTTCCEEEEEEETTEEEETTTTEEEECCSSCS
T ss_pred cCCCCCCCCCceeeecCcceEEcCCCCCEEeCCcccC
Confidence 3699999987643321 26999999998655333
No 226
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=21.98 E-value=41 Score=19.86 Aligned_cols=11 Identities=45% Similarity=1.132 Sum_probs=5.2
Q ss_pred CCCcccccccc
Q 022678 263 KCSTCGSVFGQ 273 (293)
Q Consensus 263 ~C~~C~~~f~~ 273 (293)
.|..|+..|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2ely_A 14 KCVECGKGFSR 24 (46)
T ss_dssp CCSSSCCCBSS
T ss_pred ccCccCcccCC
Confidence 34445555443
No 227
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.83 E-value=42 Score=19.81 Aligned_cols=10 Identities=40% Similarity=1.175 Sum_probs=4.6
Q ss_pred CCCccccccc
Q 022678 263 KCSTCGSVFG 272 (293)
Q Consensus 263 ~C~~C~~~f~ 272 (293)
.|..|+..|.
T Consensus 14 ~C~~C~k~F~ 23 (46)
T 2elz_A 14 KCEDCGKGYN 23 (46)
T ss_dssp BCSSSCCBCS
T ss_pred eCcccCchhC
Confidence 3444444444
No 228
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=21.72 E-value=61 Score=22.42 Aligned_cols=30 Identities=20% Similarity=0.584 Sum_probs=22.2
Q ss_pred ceeEcC--CCCeeecC--------------CCCCCCcccccccccc
Q 022678 246 MGYICS--VCLSIYCK--------------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 246 ~GyvCp--~Clsi~C~--------------~p~~C~~C~~~f~~~~ 275 (293)
..|.|+ .|...|-. -|-.|+.|+..|....
T Consensus 44 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 89 (100)
T 2ebt_A 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSD 89 (100)
T ss_dssp CCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHH
T ss_pred CCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHH
Confidence 358996 59888763 3568999999987643
No 229
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.71 E-value=49 Score=21.50 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=17.5
Q ss_pred CcccceeEcCCCCe--eecC--CCCCCCcccccc
Q 022678 242 NTIDMGYICSVCLS--IYCK--HLKKCSTCGSVF 271 (293)
Q Consensus 242 ~~~~~GyvCp~Cls--i~C~--~p~~C~~C~~~f 271 (293)
++...-=.||.|.+ ..=. -.-.|+.||.++
T Consensus 14 kv~~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 14 KVIRKNKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp CEECSSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred EEEEecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 44444566888887 2221 234788888653
No 230
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=21.60 E-value=52 Score=22.34 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=14.1
Q ss_pred eEcCCCCeeecCCCCCCCccccc
Q 022678 248 YICSVCLSIYCKHLKKCSTCGSV 270 (293)
Q Consensus 248 yvCp~Clsi~C~~p~~C~~C~~~ 270 (293)
-+||.|+...=.. -.|+.||..
T Consensus 31 ~~c~~cGe~~~~H-~vc~~CG~Y 52 (60)
T 3v2d_5 31 VPCPECKAMKPPH-TVCPECGYY 52 (60)
T ss_dssp EECTTTCCEECTT-SCCTTTCEE
T ss_pred eECCCCCCeecce-EEcCCCCcC
Confidence 4588888753322 458888843
No 231
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.51 E-value=42 Score=19.78 Aligned_cols=10 Identities=50% Similarity=1.272 Sum_probs=4.5
Q ss_pred CCCccccccc
Q 022678 263 KCSTCGSVFG 272 (293)
Q Consensus 263 ~C~~C~~~f~ 272 (293)
.|..|+..|.
T Consensus 14 ~C~~C~k~f~ 23 (46)
T 2ytq_A 14 GCSECGKAFS 23 (46)
T ss_dssp BCSSSCCBCS
T ss_pred CCCccChhhC
Confidence 3444444444
No 232
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.45 E-value=40 Score=18.54 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=8.3
Q ss_pred ceeEcCCCCeeec
Q 022678 246 MGYICSVCLSIYC 258 (293)
Q Consensus 246 ~GyvCp~Clsi~C 258 (293)
.-|.|+.|...|-
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2els_A 8 KIFTCEYCNKVFK 20 (36)
T ss_dssp CCEECTTTCCEES
T ss_pred CCEECCCCCceeC
Confidence 3577877766553
No 233
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.43 E-value=39 Score=19.88 Aligned_cols=10 Identities=20% Similarity=0.952 Sum_probs=4.7
Q ss_pred eEcCCCCeee
Q 022678 248 YICSVCLSIY 257 (293)
Q Consensus 248 yvCp~Clsi~ 257 (293)
|.|+.|...|
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2eoq_A 13 FKCDICGKSF 22 (46)
T ss_dssp CCCSSSCCCC
T ss_pred cCCCcCCchh
Confidence 5555444433
No 234
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=21.41 E-value=33 Score=23.93 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=11.2
Q ss_pred CCCCCCccccccc
Q 022678 260 HLKKCSTCGSVFG 272 (293)
Q Consensus 260 ~p~~C~~C~~~f~ 272 (293)
+|..|-|||..+.
T Consensus 3 IPVRCFTCGkvi~ 15 (66)
T 4ayb_N 3 IPIRCFTCGSLIA 15 (66)
T ss_dssp CCSBCTTTCCBCH
T ss_pred CCcccCCCcHhHH
Confidence 6889999999875
No 235
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.35 E-value=39 Score=18.22 Aligned_cols=11 Identities=45% Similarity=1.527 Sum_probs=6.6
Q ss_pred eeEcCCCCeee
Q 022678 247 GYICSVCLSIY 257 (293)
Q Consensus 247 GyvCp~Clsi~ 257 (293)
.|.|+.|...|
T Consensus 7 ~~~C~~C~k~f 17 (35)
T 2elx_A 7 GYVCALCLKKF 17 (35)
T ss_dssp SEECSSSCCEE
T ss_pred CeECCCCcchh
Confidence 47777665544
No 236
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.22 E-value=77 Score=21.22 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=16.8
Q ss_pred CCeeecC--------CCCCCCcccccccccc
Q 022678 253 CLSIYCK--------HLKKCSTCGSVFGQAQ 275 (293)
Q Consensus 253 Clsi~C~--------~p~~C~~C~~~f~~~~ 275 (293)
|.-+||. ....||+|+..+....
T Consensus 36 C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 36 CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 6666663 3468999999887655
No 237
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=21.18 E-value=42 Score=19.72 Aligned_cols=11 Identities=45% Similarity=1.051 Sum_probs=5.2
Q ss_pred CCCcccccccc
Q 022678 263 KCSTCGSVFGQ 273 (293)
Q Consensus 263 ~C~~C~~~f~~ 273 (293)
.|..|+..|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2em0_A 14 KCRECDMCFSQ 24 (46)
T ss_dssp CCSSSCCCCSS
T ss_pred ECCCCCcccCC
Confidence 34445555543
No 238
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=20.91 E-value=18 Score=26.90 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=22.6
Q ss_pred ceeEcCCCCeeecCCC----CCCCcccccccccccCC
Q 022678 246 MGYICSVCLSIYCKHL----KKCSTCGSVFGQAQTQS 278 (293)
Q Consensus 246 ~GyvCp~Clsi~C~~p----~~C~~C~~~f~~~~~~~ 278 (293)
.-|.||.|...-=+-. =.|.-|+..|.--.-.|
T Consensus 35 ~ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~AGGAy~~ 71 (92)
T 3iz5_m 35 SKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTM 71 (92)
T ss_dssp SCBCCTTTCSSCBEEEETTEEECSSSCCEEECCSSSS
T ss_pred ccccCcccCCCeeEecCcceEEcCCCCCEEeCCcccC
Confidence 3599999987632221 26999999998755333
No 239
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.87 E-value=37 Score=20.12 Aligned_cols=10 Identities=60% Similarity=1.501 Sum_probs=4.6
Q ss_pred CCCccccccc
Q 022678 263 KCSTCGSVFG 272 (293)
Q Consensus 263 ~C~~C~~~f~ 272 (293)
.|..|+..|.
T Consensus 14 ~C~~C~k~f~ 23 (46)
T 2ytm_A 14 KCMECGKAFG 23 (46)
T ss_dssp SBTTTTBCCS
T ss_pred CCCCCCchhC
Confidence 3444444444
No 240
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.77 E-value=15 Score=26.88 Aligned_cols=32 Identities=25% Similarity=0.556 Sum_probs=22.1
Q ss_pred eeEcCCCCeeecCCC----CCCCcccccccccccCC
Q 022678 247 GYICSVCLSIYCKHL----KKCSTCGSVFGQAQTQS 278 (293)
Q Consensus 247 GyvCp~Clsi~C~~p----~~C~~C~~~f~~~~~~~ 278 (293)
-|.||.|...-=+.. =.|.-|+..|.--.-.|
T Consensus 35 ky~CpfCGk~~vkR~a~GIW~C~kCg~~~AGGAy~~ 70 (83)
T 3j21_i 35 KHTCPVCGRKAVKRISTGIWQCQKCGATFAGGAYLP 70 (83)
T ss_dssp CBCCSSSCSSCEEEEETTEEEETTTCCEEECCSSSS
T ss_pred ccCCCCCCCceeEecCcCeEEcCCCCCEEeCCcccc
Confidence 599999987632221 26999999998665444
No 241
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.70 E-value=44 Score=19.60 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=4.1
Q ss_pred eEcCCCCee
Q 022678 248 YICSVCLSI 256 (293)
Q Consensus 248 yvCp~Clsi 256 (293)
|.|+.|...
T Consensus 13 ~~C~~C~k~ 21 (46)
T 2eq4_A 13 YNCKECGKS 21 (46)
T ss_dssp CCBTTTTBC
T ss_pred eECCCCCCc
Confidence 445444433
No 242
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.68 E-value=33 Score=25.84 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=20.9
Q ss_pred eccCc--ccceeEcCCCCeeecCCCCCCCccccccc
Q 022678 239 CHKNT--IDMGYICSVCLSIYCKHLKKCSTCGSVFG 272 (293)
Q Consensus 239 CH~~~--~~~GyvCp~Clsi~C~~p~~C~~C~~~f~ 272 (293)
|+..+ ....|.|+.|..-|=. -+.||.|+..|-
T Consensus 38 Cq~eL~~~g~~~hC~~C~~~f~~-~a~CPdC~q~Le 72 (101)
T 2jne_A 38 CQHVLDQDNGHARCRSCGEFIEM-KALCPDCHQPLQ 72 (101)
T ss_dssp SCSBEEEETTEEEETTTCCEEEE-EEECTTTCSBCE
T ss_pred CCCcceecCCEEECccccchhhc-cccCcchhhHHH
Confidence 55555 2334559999886543 356888887664
No 243
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.66 E-value=48 Score=29.97 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=20.6
Q ss_pred eEcCCCCeeecCCCCCCCccccc
Q 022678 248 YICSVCLSIYCKHLKKCSTCGSV 270 (293)
Q Consensus 248 yvCp~Clsi~C~~p~~C~~C~~~ 270 (293)
..|+.|.+-.=.....|+.||..
T Consensus 209 l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 209 LSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEETTTCCEEECCTTSCSSSCCC
T ss_pred EEeCCCCCEEeecCcCCcCCCCC
Confidence 56999999998889999999986
No 244
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=20.55 E-value=42 Score=18.22 Aligned_cols=12 Identities=33% Similarity=1.179 Sum_probs=7.2
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 1srk_A 7 PFVCRICLSAFT 18 (35)
T ss_dssp CEECSSSCCEES
T ss_pred CeeCCCCCcccC
Confidence 477776655543
No 245
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.24 E-value=42 Score=18.32 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=7.2
Q ss_pred eeEcCCCCeee
Q 022678 247 GYICSVCLSIY 257 (293)
Q Consensus 247 GyvCp~Clsi~ 257 (293)
.|.|+.|...|
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elt_A 9 PYKCPQCSYAS 19 (36)
T ss_dssp SEECSSSSCEE
T ss_pred CCCCCCCCccc
Confidence 57777766554
No 246
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=20.15 E-value=38 Score=23.78 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=10.4
Q ss_pred ceeEcCCCCeeec
Q 022678 246 MGYICSVCLSIYC 258 (293)
Q Consensus 246 ~GyvCp~Clsi~C 258 (293)
-||+|++|...|=
T Consensus 35 p~~~C~~CGE~~~ 47 (78)
T 3ga8_A 35 HGLYCVHCEESIM 47 (78)
T ss_dssp EEEEETTTCCEEC
T ss_pred eeEECCCCCCEEE
Confidence 4999999987663
No 247
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.15 E-value=70 Score=18.69 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=7.2
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em2_A 12 PFKCKECGKAFR 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CEECCcCCchhC
Confidence 467766665554
No 248
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.14 E-value=70 Score=18.64 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=6.7
Q ss_pred eeEcCCCCeeec
Q 022678 247 GYICSVCLSIYC 258 (293)
Q Consensus 247 GyvCp~Clsi~C 258 (293)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ep3_A 12 PYRCAECGKAFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCchhC
Confidence 466666655444
Done!