BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022680
         (293 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P70194|CLC4F_MOUSE C-type lectin domain family 4 member F OS=Mus musculus GN=Clec4f
           PE=1 SV=1
          Length = 548

 Score = 33.9 bits (76), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 12/155 (7%)

Query: 138 RAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEK---LGVRFRVTRKALKDPITQAA 194
           +AE + + +L  RIE +   MK ++  L+ L R L     L    ++ +  L+   T+  
Sbjct: 306 KAELKSTSSLNSRIEVVNGQMKDASRELQTLRRDLSDVSALKSNVQMLQSNLQRAKTEMQ 365

Query: 195 ALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIGKTGKLFENR-- 252
            L + + +AT+AL  +    +  LG +Q+ + A +++Q+ Q +++  I +  K F     
Sbjct: 366 TL-KADLQATKALTAKIQGEQNRLGALQEAVAAQKQEQKTQNQVLQLIAQNWKYFNGNFY 424

Query: 253 -----QEPSQEQDKLKTSDFIDGAKQMETQETEAF 282
                ++P +E +K  TS     A  + +QE +AF
Sbjct: 425 YFSRDKKPWREAEKFCTSQGAHLAS-VTSQEEQAF 458


>sp|P0A4G7|SECA_STRLI Protein translocase subunit SecA OS=Streptomyces lividans GN=secA
           PE=1 SV=1
          Length = 947

 Score = 32.3 bits (72), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 199 KNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIGKTGKLFENRQEPSQE 258
           +N   TRA+A     +E +  E +K +L   E   +Q E+I   G+  ++ E   E  QE
Sbjct: 636 ENKMVTRAIASAQSQVETQNFETRKNVLKYDEVLNRQREVIY--GERRRVLEG--EDLQE 691

Query: 259 QDKLKTSDFIDGAKQMETQE 278
           Q +  T+D ID   Q ET E
Sbjct: 692 QIQHFTNDTIDAYVQAETAE 711


>sp|P0A4G6|SECA_STRCO Protein translocase subunit SecA OS=Streptomyces coelicolor (strain
           ATCC BAA-471 / A3(2) / M145) GN=secA PE=3 SV=1
          Length = 947

 Score = 32.3 bits (72), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 199 KNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIGKTGKLFENRQEPSQE 258
           +N   TRA+A     +E +  E +K +L   E   +Q E+I   G+  ++ E   E  QE
Sbjct: 636 ENKMVTRAIASAQSQVETQNFETRKNVLKYDEVLNRQREVIY--GERRRVLEG--EDLQE 691

Query: 259 QDKLKTSDFIDGAKQMETQE 278
           Q +  T+D ID   Q ET E
Sbjct: 692 QIQHFTNDTIDAYVQAETAE 711


>sp|Q6F3J0|NFKB1_CANFA Nuclear factor NF-kappa-B p105 subunit OS=Canis familiaris GN=NFKB1
           PE=2 SV=2
          Length = 972

 Score = 32.3 bits (72), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 9/111 (8%)

Query: 133 CGEKARAEGRESVNLVGRI-EKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPIT 191
           CG+      RE+VNL G++ E  E+D +SS  +  V       +G++   +R      + 
Sbjct: 446 CGKNVD---REAVNLSGKVTEPTEQDKESSMGVDEVTLTY--TVGIKEENSRFQDNLFLE 500

Query: 192 QAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAI 242
           +A  LA++++ A    A+ GDV  K L  +Q+ L A+Q++    + L LAI
Sbjct: 501 KAMQLAKRHANALFDYAVTGDV--KMLLAVQRHLTAVQDENGDSV-LHLAI 548


>sp|A2R3Z3|MDV1_ASPNC Mitochondrial division protein 1 OS=Aspergillus niger (strain CBS
           513.88 / FGSC A1513) GN=mdv1 PE=3 SV=2
          Length = 657

 Score = 31.2 bits (69), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 167 VLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNS---EATRALAMQGDVLEKELGEIQK 223
           +LSR++E +GVR  +    + D   + A L        +    L M+   LE EL EI+ 
Sbjct: 176 LLSRRMELMGVRKNMCSSEIHDIDNKIANLHNMRKIVLDRLAGLEMEEADLEHELNEIEN 235

Query: 224 VLLAMQEQQQK 234
            L  +QE+QQ+
Sbjct: 236 KLEDIQEEQQE 246


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.129    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,837,620
Number of Sequences: 539616
Number of extensions: 3765587
Number of successful extensions: 15780
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 15602
Number of HSP's gapped (non-prelim): 348
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)