Query 022680
Match_columns 293
No_of_seqs 20 out of 22
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 05:21:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06975 bifunctional uroporph 88.9 3.3 7.1E-05 42.4 10.0 48 186-233 362-409 (656)
2 PF10805 DUF2730: Protein of u 85.8 10 0.00022 30.6 9.2 12 148-159 48-59 (106)
3 cd07628 BAR_Atg24p The Bin/Amp 85.1 12 0.00026 32.5 10.0 94 146-239 8-117 (185)
4 TIGR03495 phage_LysB phage lys 83.3 28 0.00061 30.1 11.3 50 111-176 4-53 (135)
5 PF06295 DUF1043: Protein of u 82.4 7.7 0.00017 32.2 7.5 71 110-210 2-72 (128)
6 PRK11677 hypothetical protein; 79.6 10 0.00022 32.6 7.4 29 182-210 48-76 (134)
7 PF05529 Bap31: B-cell recepto 76.4 24 0.00053 30.1 8.9 34 202-235 154-187 (192)
8 cd07624 BAR_SNX7_30 The Bin/Am 76.2 31 0.00066 30.1 9.6 96 144-239 16-126 (200)
9 COG3763 Uncharacterized protei 72.7 6.6 0.00014 31.2 4.2 33 107-139 7-39 (71)
10 cd01106 HTH_TipAL-Mta Helix-Tu 72.5 15 0.00032 28.5 6.1 45 186-230 56-101 (103)
11 PF07889 DUF1664: Protein of u 72.0 10 0.00023 32.2 5.5 71 159-229 39-116 (126)
12 PRK13454 F0F1 ATP synthase sub 71.1 69 0.0015 27.7 13.3 108 119-239 43-150 (181)
13 PRK09835 sensor kinase CusS; P 70.6 20 0.00043 32.5 7.3 16 182-197 269-284 (482)
14 TIGR01386 cztS_silS_copS heavy 69.3 56 0.0012 29.2 9.7 13 183-195 249-261 (457)
15 PF06305 DUF1049: Protein of u 69.1 15 0.00032 26.3 5.0 46 106-159 20-65 (68)
16 COG3105 Uncharacterized protei 67.9 12 0.00026 33.0 5.1 67 108-204 7-75 (138)
17 PF06120 Phage_HK97_TLTM: Tail 64.7 1.4E+02 0.003 28.9 14.3 85 143-227 68-166 (301)
18 PRK10361 DNA recombination pro 63.6 1.8E+02 0.0039 29.8 14.6 46 194-239 70-118 (475)
19 PF07889 DUF1664: Protein of u 63.5 29 0.00063 29.6 6.5 49 181-229 36-88 (126)
20 cd07622 BAR_SNX4 The Bin/Amphi 62.9 1.1E+02 0.0024 27.2 10.6 98 145-242 17-128 (201)
21 PF10828 DUF2570: Protein of u 60.4 89 0.0019 25.2 11.5 27 197-223 55-81 (110)
22 PRK04778 septation ring format 60.4 1.9E+02 0.0042 29.1 12.6 120 108-243 6-146 (569)
23 PF04375 HemX: HemX; InterPro 60.0 1.6E+02 0.0034 28.3 11.4 31 198-228 89-119 (372)
24 cd07666 BAR_SNX7 The Bin/Amphi 58.1 1.1E+02 0.0023 28.6 9.7 96 144-239 56-166 (243)
25 TIGR02231 conserved hypothetic 55.7 1.3E+02 0.0029 29.6 10.4 84 146-229 75-165 (525)
26 PF03672 UPF0154: Uncharacteri 54.5 22 0.00047 27.6 3.9 30 109-138 2-31 (64)
27 PRK01844 hypothetical protein; 52.4 26 0.00057 27.8 4.2 31 108-138 8-38 (72)
28 PF09325 Vps5: Vps5 C terminal 52.4 1.5E+02 0.0032 25.3 10.7 99 146-244 28-143 (236)
29 cd07667 BAR_SNX30 The Bin/Amph 50.1 1.9E+02 0.0042 27.1 10.0 96 144-239 53-163 (240)
30 PRK09174 F0F1 ATP synthase sub 49.7 1.9E+02 0.0042 25.8 13.7 74 123-207 69-142 (204)
31 smart00503 SynN Syntaxin N-ter 48.7 1.2E+02 0.0025 23.1 10.1 64 146-209 5-71 (117)
32 PRK00523 hypothetical protein; 48.6 32 0.00068 27.4 4.0 31 108-138 9-39 (72)
33 PRK11100 sensory histidine kin 46.8 2.2E+02 0.0047 25.6 12.7 18 181-198 262-279 (475)
34 PRK11637 AmiB activator; Provi 45.6 2.9E+02 0.0062 26.6 14.5 89 146-238 44-132 (428)
35 PF11446 DUF2897: Protein of u 45.3 23 0.0005 26.4 2.7 24 107-130 4-27 (55)
36 KOG3165 Predicted nucleic-acid 43.5 8.9 0.00019 35.2 0.3 22 170-191 105-126 (195)
37 PF10506 MCC-bdg_PDZ: PDZ doma 42.7 1.6E+02 0.0035 22.9 7.9 64 147-230 3-67 (67)
38 PF06008 Laminin_I: Laminin Do 41.7 2.6E+02 0.0056 25.1 9.3 84 144-231 82-168 (264)
39 CHL00019 atpF ATP synthase CF0 39.6 2.4E+02 0.0053 24.1 13.1 115 146-262 52-169 (184)
40 KOG2629 Peroxisomal membrane a 39.5 3.9E+02 0.0084 26.4 11.7 98 112-230 90-196 (300)
41 COG4942 Membrane-bound metallo 39.2 4.4E+02 0.0095 26.9 12.1 118 124-241 38-193 (420)
42 TIGR02680 conserved hypothetic 38.0 2.5E+02 0.0055 31.6 10.3 105 109-224 720-826 (1353)
43 cd01107 HTH_BmrR Helix-Turn-He 35.5 1.4E+02 0.0029 23.6 5.9 42 189-230 60-103 (108)
44 PF04186 FxsA: FxsA cytoplasmi 35.5 1E+02 0.0023 25.4 5.4 39 96-134 7-51 (119)
45 PF07763 FEZ: FEZ-like protein 35.4 1.7E+02 0.0038 27.8 7.4 54 186-239 176-232 (244)
46 PRK14475 F0F1 ATP synthase sub 35.2 2.8E+02 0.006 23.5 12.7 138 106-257 10-150 (167)
47 PRK11637 AmiB activator; Provi 35.0 2E+02 0.0042 27.7 7.9 76 148-223 60-135 (428)
48 PRK07352 F0F1 ATP synthase sub 34.6 2.9E+02 0.0062 23.4 13.3 115 146-262 47-164 (174)
49 PF10186 Atg14: UV radiation r 34.5 3.1E+02 0.0067 23.8 9.6 92 147-242 68-159 (302)
50 cd04770 HTH_HMRTR Helix-Turn-H 34.3 1.7E+02 0.0037 23.1 6.3 29 201-229 78-106 (123)
51 PRK11091 aerobic respiration c 34.3 5E+02 0.011 26.1 14.7 32 208-240 130-161 (779)
52 cd04775 HTH_Cfa-like Helix-Tur 34.2 1.3E+02 0.0029 23.5 5.6 40 189-229 59-98 (102)
53 PF05957 DUF883: Bacterial pro 34.2 28 0.0006 26.8 1.7 21 107-127 72-94 (94)
54 PF14077 WD40_alt: Alternative 33.9 35 0.00076 25.5 2.1 27 135-161 4-30 (48)
55 TIGR03785 marine_sort_HK prote 33.0 5.7E+02 0.012 26.4 13.6 15 183-197 493-507 (703)
56 PRK13694 hypothetical protein; 31.6 57 0.0012 26.7 3.2 36 146-181 16-51 (83)
57 PF08232 Striatin: Striatin fa 31.2 1.4E+02 0.003 25.2 5.5 29 145-173 28-56 (134)
58 PRK13461 F0F1 ATP synthase sub 31.2 3.1E+02 0.0067 22.8 12.5 139 106-260 7-148 (159)
59 TIGR02883 spore_cwlD N-acetylm 31.1 62 0.0013 27.6 3.5 44 154-199 23-81 (189)
60 PF10073 DUF2312: Uncharacteri 30.8 60 0.0013 25.9 3.1 42 146-187 8-49 (74)
61 cd04784 HTH_CadR-PbrR Helix-Tu 30.7 2.6E+02 0.0056 22.4 6.8 28 202-229 79-106 (127)
62 PF10805 DUF2730: Protein of u 30.7 1.9E+02 0.0041 23.4 6.0 30 190-219 74-104 (106)
63 PF09090 MIF4G_like_2: MIF4G l 30.7 1.2E+02 0.0025 27.4 5.3 32 159-190 143-174 (253)
64 PF06160 EzrA: Septation ring 30.5 5.9E+02 0.013 25.9 12.3 46 111-156 6-51 (560)
65 PF11221 Med21: Subunit 21 of 30.5 2.8E+02 0.0061 23.3 7.3 71 152-227 65-140 (144)
66 PF08657 DASH_Spc34: DASH comp 30.4 1.7E+02 0.0036 27.5 6.5 63 85-170 152-215 (259)
67 PF08172 CASP_C: CASP C termin 29.4 84 0.0018 29.2 4.3 31 146-176 90-120 (248)
68 PF05266 DUF724: Protein of un 29.4 1.8E+02 0.0039 26.0 6.2 59 170-232 79-147 (190)
69 PLN02372 violaxanthin de-epoxi 28.8 6.8E+02 0.015 26.0 10.9 23 129-153 346-368 (455)
70 cd04790 HTH_Cfa-like_unk Helix 28.0 1.9E+02 0.0041 24.9 6.0 43 189-231 60-103 (172)
71 TIGR00162 conserved hypothetic 27.9 1E+02 0.0022 27.1 4.4 69 163-234 97-170 (188)
72 PF11353 DUF3153: Protein of u 27.9 57 0.0012 28.6 2.8 23 107-129 185-207 (209)
73 COG3851 UhpB Signal transducti 27.7 1.3E+02 0.0029 31.1 5.6 41 117-162 264-306 (497)
74 PF12718 Tropomyosin_1: Tropom 27.6 3.8E+02 0.0081 22.8 7.6 74 147-228 26-99 (143)
75 PRK13460 F0F1 ATP synthase sub 27.3 3.9E+02 0.0084 22.7 12.5 140 107-262 19-161 (173)
76 PRK13453 F0F1 ATP synthase sub 27.1 4E+02 0.0086 22.8 12.7 126 122-260 33-161 (173)
77 COG3750 Uncharacterized protei 27.1 1.1E+02 0.0024 25.2 4.1 42 146-187 18-59 (85)
78 KOG3478 Prefoldin subunit 6, K 27.0 2.6E+02 0.0057 24.3 6.5 46 198-243 65-110 (120)
79 PRK13428 F0F1 ATP synthase sub 24.8 6.9E+02 0.015 24.8 12.9 134 106-255 3-139 (445)
80 cd04781 HTH_MerR-like_sg6 Heli 24.6 3.2E+02 0.007 21.8 6.3 41 188-228 57-100 (120)
81 KOG2189 Vacuolar H+-ATPase V0 24.1 5.3E+02 0.011 28.7 9.4 94 144-254 51-144 (829)
82 PF04791 LMBR1: LMBR1-like mem 23.9 6.4E+02 0.014 24.1 10.2 26 107-132 166-192 (471)
83 cd04788 HTH_NolA-AlbR Helix-Tu 23.8 1.7E+02 0.0037 22.7 4.5 36 189-224 59-95 (96)
84 KOG0994 Extracellular matrix g 23.7 4.6E+02 0.01 30.9 9.2 93 107-207 1167-1262(1758)
85 PRK14827 undecaprenyl pyrophos 23.7 3.5E+02 0.0076 26.1 7.4 32 169-200 147-184 (296)
86 PHA02629 A-type inclusion body 23.6 1.3E+02 0.0027 23.4 3.6 26 148-173 32-57 (61)
87 cd00890 Prefoldin Prefoldin is 23.6 2.3E+02 0.005 22.0 5.2 35 200-234 85-119 (129)
88 COG4942 Membrane-bound metallo 22.6 8.4E+02 0.018 25.0 11.6 81 149-240 38-118 (420)
89 TIGR02043 ZntR Zn(II)-responsi 22.6 3.4E+02 0.0074 22.2 6.2 28 202-229 81-108 (131)
90 PF11833 DUF3353: Protein of u 22.1 1.4E+02 0.003 26.8 4.2 39 93-133 118-167 (194)
91 PRK14472 F0F1 ATP synthase sub 22.0 4.9E+02 0.011 22.0 12.5 114 146-261 46-162 (175)
92 PRK09514 zntR zinc-responsive 22.0 3.3E+02 0.0072 22.6 6.1 28 202-229 81-108 (140)
93 PF06008 Laminin_I: Laminin Do 21.9 5.3E+02 0.011 23.2 7.8 85 147-231 50-142 (264)
94 cd07629 BAR_Atg20p The Bin/Amp 21.9 5.4E+02 0.012 22.5 9.9 55 185-239 60-121 (187)
95 PF01520 Amidase_3: N-acetylmu 21.9 1.8E+02 0.0039 23.5 4.5 42 155-198 22-64 (175)
96 PF11915 DUF3433: Protein of u 21.8 1.1E+02 0.0024 23.1 3.1 22 107-128 3-24 (92)
97 PF13600 DUF4140: N-terminal d 21.8 1.9E+02 0.0041 22.3 4.4 34 198-231 66-99 (104)
98 PRK10404 hypothetical protein; 21.3 65 0.0014 26.3 1.8 23 105-127 77-101 (101)
99 KOG3415 Putative Rab5-interact 21.0 50 0.0011 28.9 1.1 31 91-121 37-72 (129)
100 KOG0996 Structural maintenance 21.0 5.2E+02 0.011 30.0 8.9 37 149-185 778-814 (1293)
101 PF00901 Orbi_VP5: Orbivirus o 21.0 5.2E+02 0.011 27.2 8.4 35 142-176 84-118 (508)
102 PRK06569 F0F1 ATP synthase sub 20.8 5.9E+02 0.013 22.5 12.6 36 211-248 105-141 (155)
103 cd04769 HTH_MerR2 Helix-Turn-H 20.8 4.4E+02 0.0094 20.9 6.6 29 202-230 79-107 (116)
104 PF05633 DUF793: Protein of un 20.7 4.8E+02 0.01 26.3 7.9 82 131-225 297-378 (389)
105 cd01109 HTH_YyaN Helix-Turn-He 20.6 4.2E+02 0.0092 20.8 6.3 30 201-230 78-107 (113)
106 PRK15048 methyl-accepting chem 20.6 7.9E+02 0.017 23.9 15.1 13 114-126 202-214 (553)
107 PRK09303 adaptive-response sen 20.5 6.8E+02 0.015 23.1 11.1 49 147-195 123-171 (380)
108 PRK10132 hypothetical protein; 20.1 81 0.0018 26.1 2.2 23 105-127 83-107 (108)
109 PRK05771 V-type ATP synthase s 20.0 5.3E+02 0.011 26.3 8.2 28 150-177 44-71 (646)
110 cd00179 SynN Syntaxin N-termin 20.0 4.6E+02 0.0099 20.9 10.2 64 147-210 4-70 (151)
No 1
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=88.95 E-value=3.3 Score=42.39 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=37.3
Q ss_pred ccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022680 186 LKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQ 233 (293)
Q Consensus 186 LrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~ 233 (293)
+..+..|...++++..+..+.+..|.+.||.++.+.++-..++|++-+
T Consensus 362 ~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~ 409 (656)
T PRK06975 362 NDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQ 409 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777778888999999999999999988888877654
No 2
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.80 E-value=10 Score=30.64 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhH
Q 022680 148 VGRIEKLEEDMK 159 (293)
Q Consensus 148 ~~RiekLEe~vr 159 (293)
..|+..||..++
T Consensus 48 ~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 48 DRRLQALETKLE 59 (106)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 3
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=85.11 E-value=12 Score=32.48 Aligned_cols=94 Identities=16% Similarity=0.237 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHH-------HHHHhhcceeeeeh---h-hccchHHHHHHHHhhhhHHHHHHHhh-hhh
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLS-------RQLEKLGVRFRVTR---K-ALKDPITQAAALAQKNSEATRALAMQ-GDV 213 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLS-------RqlEKLGvRfRvtr---R-tLrdPI~etaAlAqknSeatraLA~r-edl 213 (293)
.+.+.+.+||+.+...-.+...+. -.+..+|..|...- . +|-+|+...+....+.|..+..|+.. .+-
T Consensus 8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~ 87 (185)
T cd07628 8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNKYTDEN 87 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655444443332 23334444443221 2 39999999999999999999999987 444
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 022680 214 LEKELGEI----QKVLLAMQEQQQKQLELI 239 (293)
Q Consensus 214 LEkEL~ei----Q~vl~AMQeqq~KQleLI 239 (293)
+..=|++. +++-.+|....+||++.=
T Consensus 88 f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e 117 (185)
T cd07628 88 YLTSLKDLLHYILSLKNLIKLRDQKQLDYE 117 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 77677765 445556667777777653
No 4
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=83.32 E-value=28 Score=30.06 Aligned_cols=50 Identities=22% Similarity=0.030 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhc
Q 022680 111 VVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLG 176 (293)
Q Consensus 111 ~V~LV~AV~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLG 176 (293)
++.++.+|+++.|.+ |+ . .++-+.++.-...++..-+.+..++.|++-|.
T Consensus 4 i~l~~~a~~~~~~~~---~~-~------------~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~ 53 (135)
T TIGR03495 4 IVLLGLLVAGLGWQS---QR-L------------RNARADLERANRVLKAQQAELASKANQLIVLL 53 (135)
T ss_pred HHHHHHHHHHHHHHH---HH-H------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445666666665653 31 1 25677778777777777777777777776554
No 5
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=82.43 E-value=7.7 Score=32.16 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccch
Q 022680 110 GVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDP 189 (293)
Q Consensus 110 g~V~LV~AV~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdP 189 (293)
.++.||+|++||+++-|.-.... ....+||+.+...- -.+---|..+.+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~----------------~~q~~l~~eL~~~k--------------~el~~yk~~V~~H 51 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQ----------------QKQAKLEQELEQAK--------------QELEQYKQEVNDH 51 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccch----------------hhHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 35778999999988866543111 12344554444221 1112246778888
Q ss_pred HHHHHHHHhhhhHHHHHHHhh
Q 022680 190 ITQAAALAQKNSEATRALAMQ 210 (293)
Q Consensus 190 I~etaAlAqknSeatraLA~r 210 (293)
..+||.+..++.+--+-|-+.
T Consensus 52 F~~ta~Ll~~l~~~Y~~l~~H 72 (128)
T PF06295_consen 52 FAQTAELLDNLTQDYQKLYQH 72 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888988888777766655443
No 6
>PRK11677 hypothetical protein; Provisional
Probab=79.56 E-value=10 Score=32.58 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=21.4
Q ss_pred ehhhccchHHHHHHHHhhhhHHHHHHHhh
Q 022680 182 TRKALKDPITQAAALAQKNSEATRALAMQ 210 (293)
Q Consensus 182 trRtLrdPI~etaAlAqknSeatraLA~r 210 (293)
-|.++-+...+||.+..+..+.-+-|-+-
T Consensus 48 YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~H 76 (134)
T PRK11677 48 YRQELVSHFARSAELLDTMAKDYRQLYQH 76 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888988888887776665443
No 7
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=76.41 E-value=24 Score=30.14 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=26.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 022680 202 EATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQ 235 (293)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vl~AMQeqq~KQ 235 (293)
+....+-...+-|++||.+.++-+.+|++|....
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777889999999999999999887643
No 8
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=76.17 E-value=31 Score=30.10 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=67.0
Q ss_pred cchhHHHHHHHHHHhHhHHHHHHHHH-------HHHHhhcceeeeeh---hhccchHHHHHHHHhhhhHHHHHHHhhhh-
Q 022680 144 SVNLVGRIEKLEEDMKSSATILRVLS-------RQLEKLGVRFRVTR---KALKDPITQAAALAQKNSEATRALAMQGD- 212 (293)
Q Consensus 144 ~~~l~~RiekLEe~vrs~~t~irvLS-------RqlEKLGvRfRvtr---RtLrdPI~etaAlAqknSeatraLA~red- 212 (293)
=..+.+.|.+||+.+...-.+..++. -.+..+|..|...- ..|.+||..++....+.+.++..|+...+
T Consensus 16 F~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l~~~~~~ 95 (200)
T cd07624 16 FDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVLLSDHEF 95 (200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888877766555443 34455566555432 25899999999999999999999999877
Q ss_pred hHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 022680 213 VLEKELGEI----QKVLLAMQEQQQKQLELI 239 (293)
Q Consensus 213 lLEkEL~ei----Q~vl~AMQeqq~KQleLI 239 (293)
-|..=|++. +++-.+|....+||.+.=
T Consensus 96 ~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e 126 (200)
T cd07624 96 VFLPPLREYLLYSDAVKDVLKRRDQFQIEYE 126 (200)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666664 444455556666776554
No 9
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.73 E-value=6.6 Score=31.21 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=29.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 022680 107 LACGVVSLVCGVWIGAIIRRRQWRRVCGEKARA 139 (293)
Q Consensus 107 ~vwg~V~LV~AV~iGaiIRRRQW~Ri~~~~gr~ 139 (293)
.+|..|-|++|+++|.+|-||+-....++.++-
T Consensus 7 il~ivl~ll~G~~~G~fiark~~~k~lk~NPpi 39 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIARKQMKKQLKDNPPI 39 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 378889999999999999999999999998773
No 10
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=72.49 E-value=15 Score=28.55 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=36.4
Q ss_pred ccchHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 186 LKDPITQAAALAQKN-SEATRALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 186 LrdPI~etaAlAqkn-SeatraLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
+--||.+.+...... .+....|..+...|++|+.+++..+..+++
T Consensus 56 ~g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 101 (103)
T cd01106 56 LGFSLKEIKELLKDPSEDLLEALREQKELLEEKKERLDKLIKTIDR 101 (103)
T ss_pred cCCCHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777666655 778889999999999999999999888775
No 11
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=72.03 E-value=10 Score=32.25 Aligned_cols=71 Identities=15% Similarity=0.296 Sum_probs=47.0
Q ss_pred HhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHh-------hhhhHHHHHHHHHHHHHHHH
Q 022680 159 KSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAM-------QGDVLEKELGEIQKVLLAMQ 229 (293)
Q Consensus 159 rs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~-------redlLEkEL~eiQ~vl~AMQ 229 (293)
|++..++..++-|||++.-..+-|||.|..-|...-.--.++-|++..... -.+.+-.++..+|.++..|.
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999999999987777555544454444443322 22234445555555555543
No 12
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=71.11 E-value=69 Score=27.74 Aligned_cols=108 Identities=13% Similarity=0.128 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHh
Q 022680 119 WIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQ 198 (293)
Q Consensus 119 ~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAq 198 (293)
++-.++.+--|..+.+ -+-.|=.++++++...-..-+-....+++.--...-.|..-+.=|.++.+.++
T Consensus 43 iL~~ll~k~l~~PI~~-----------~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~ 111 (181)
T PRK13454 43 AIYFVLTRVALPRIGA-----------VLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQ 111 (181)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777765544 36677777777777766665555555555555566667777777788888888
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022680 199 KNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELI 239 (293)
Q Consensus 199 knSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~KQleLI 239 (293)
+..+..+.-|.++ .++.+.+.++-+..+..+-.++|+-+
T Consensus 112 ~~~~~~~~~A~~e--~~~~~aea~~~I~~~k~~a~~~l~~~ 150 (181)
T PRK13454 112 AELDVAIAKADAE--IAAKAAESEKRIAEIRAGALESVEEV 150 (181)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777554 77888888888887777777776543
No 13
>PRK09835 sensor kinase CusS; Provisional
Probab=70.55 E-value=20 Score=32.53 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=9.8
Q ss_pred ehhhccchHHHHHHHH
Q 022680 182 TRKALKDPITQAAALA 197 (293)
Q Consensus 182 trRtLrdPI~etaAlA 197 (293)
.-.+|+.|+......+
T Consensus 269 laheL~tpl~~i~~~~ 284 (482)
T PRK09835 269 IAHEIRTPITNLITQT 284 (482)
T ss_pred HHHHhhhhHHHHHHHH
Confidence 3346778887655444
No 14
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=69.25 E-value=56 Score=29.17 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=8.4
Q ss_pred hhhccchHHHHHH
Q 022680 183 RKALKDPITQAAA 195 (293)
Q Consensus 183 rRtLrdPI~etaA 195 (293)
-.+||.|++....
T Consensus 249 ~h~l~tpl~~~~~ 261 (457)
T TIGR01386 249 AHELRTPLTNLLG 261 (457)
T ss_pred hhhhcCcHHHHHH
Confidence 4567888875433
No 15
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=69.10 E-value=15 Score=26.27 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=26.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhH
Q 022680 106 VLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMK 159 (293)
Q Consensus 106 ~~vwg~V~LV~AV~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vr 159 (293)
..+|-.+.++.|+++|.++-.-.|.+.-.+-. .+..+++++|+++.
T Consensus 20 l~l~il~~f~~G~llg~l~~~~~~~~~r~~~~--------~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 20 LGLLILIAFLLGALLGWLLSLPSRLRLRRRIR--------RLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 34555666667777776655544444333321 35667888887765
No 16
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.88 E-value=12 Score=32.98 Aligned_cols=67 Identities=25% Similarity=0.362 Sum_probs=42.5
Q ss_pred hhhh--HHHHHHHHHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhh
Q 022680 108 ACGV--VSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKA 185 (293)
Q Consensus 108 vwg~--V~LV~AV~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRt 185 (293)
+|.+ +.||+||+||++|-|.- ...-+ . =..+-++|||+-.++=--|++
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt-----~~~~k----------~---------------q~~~q~ELe~~K~~ld~~rqe 56 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLT-----NRKLK----------Q---------------QQKLQYELEKVKAQLDEYRQE 56 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-----chhhh----------h---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 5654 56899999999996542 22111 0 113445666666666667778
Q ss_pred ccchHHHHHHHHhhhhHHH
Q 022680 186 LKDPITQAAALAQKNSEAT 204 (293)
Q Consensus 186 LrdPI~etaAlAqknSeat 204 (293)
|-+..+++|.+-++..+--
T Consensus 57 l~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 57 LVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888887766555443
No 17
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=64.73 E-value=1.4e+02 Score=28.88 Aligned_cols=85 Identities=26% Similarity=0.312 Sum_probs=54.6
Q ss_pred ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccch---H--------HHHHHHHhhhhHHHHHHHhhh
Q 022680 143 ESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDP---I--------TQAAALAQKNSEATRALAMQG 211 (293)
Q Consensus 143 ~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdP---I--------~etaAlAqknSeatraLA~re 211 (293)
+...|..-+.|+++++...-..|.-+-++++.|--.+.-.-+.+.+| + ...+....+.+++++.|+.-+
T Consensus 68 s~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~ 147 (301)
T PF06120_consen 68 SSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQ 147 (301)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888877777777777777765543332222333333 1 233456778889999999888
Q ss_pred hhHHHHH---HHHHHHHHH
Q 022680 212 DVLEKEL---GEIQKVLLA 227 (293)
Q Consensus 212 dlLEkEL---~eiQ~vl~A 227 (293)
+.||+.. .++|++|..
T Consensus 148 ~~l~q~~~k~~~~q~~l~~ 166 (301)
T PF06120_consen 148 ERLEQMQSKASETQATLND 166 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8887764 456666543
No 18
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=63.57 E-value=1.8e+02 Score=29.82 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=20.1
Q ss_pred HHHHhhhhHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 022680 194 AALAQKNSEATRALAMQGDVLEKEL---GEIQKVLLAMQEQQQKQLELI 239 (293)
Q Consensus 194 aAlAqknSeatraLA~redlLEkEL---~eiQ~vl~AMQeqq~KQleLI 239 (293)
.++-+.+++....++.-+..||+|- .|-...|..++++=..||+-|
T Consensus 70 ~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 70 RSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444332 223334444555555666654
No 19
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=63.55 E-value=29 Score=29.60 Aligned_cols=49 Identities=20% Similarity=0.368 Sum_probs=23.5
Q ss_pred eehhhccchHHHHHHHHhhhhHHH----HHHHhhhhhHHHHHHHHHHHHHHHH
Q 022680 181 VTRKALKDPITQAAALAQKNSEAT----RALAMQGDVLEKELGEIQKVLLAMQ 229 (293)
Q Consensus 181 vtrRtLrdPI~etaAlAqknSeat----raLA~redlLEkEL~eiQ~vl~AMQ 229 (293)
||||.|.+-..-..+--++-|+++ +-|.+|.|.|...|.+...+-.+|+
T Consensus 36 vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~ 88 (126)
T PF07889_consen 36 VTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIK 88 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455555555544444333333333 3355555555555555444444444
No 20
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=62.89 E-value=1.1e+02 Score=27.18 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=63.2
Q ss_pred chhHHHHHHHHHHhHhHHHHHHHHHH-------HHHhhcceeee---ehhhccchHHHHHHHHhhhhHHHHHHHhhhhhH
Q 022680 145 VNLVGRIEKLEEDMKSSATILRVLSR-------QLEKLGVRFRV---TRKALKDPITQAAALAQKNSEATRALAMQGDVL 214 (293)
Q Consensus 145 ~~l~~RiekLEe~vrs~~t~irvLSR-------qlEKLGvRfRv---trRtLrdPI~etaAlAqknSeatraLA~redlL 214 (293)
..+...+.+|++.+...-.+.+.+.+ .+.-+|..|.. .=.+|-+||..+...+...+.++..++.-++-+
T Consensus 17 ~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~~~~~~~f 96 (201)
T cd07622 17 EDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNGLEDEELI 96 (201)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34566666676666555444444333 23445555542 225899999999988888999888888777666
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 022680 215 EKELGEI----QKVLLAMQEQQQKQLELILAI 242 (293)
Q Consensus 215 EkEL~ei----Q~vl~AMQeqq~KQleLIL~i 242 (293)
..=|+|. +++-..|--..+||+++-.+.
T Consensus 97 ~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~ 128 (201)
T cd07622 97 ADQLKEYLFFADSLRAVCKKHELLQYDLEKAE 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666664 344444556677888776554
No 21
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=60.38 E-value=89 Score=25.18 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=14.8
Q ss_pred HhhhhHHHHHHHhhhhhHHHHHHHHHH
Q 022680 197 AQKNSEATRALAMQGDVLEKELGEIQK 223 (293)
Q Consensus 197 AqknSeatraLA~redlLEkEL~eiQ~ 223 (293)
.+.|-.++...-.++..++.|-.+.+.
T Consensus 55 ~~~~r~~~~~~~~~~qq~r~~~e~~~e 81 (110)
T PF10828_consen 55 LQQNRQAVEEQQKREQQLRQQSEERRE 81 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555666666655544444
No 22
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=60.38 E-value=1.9e+02 Score=29.11 Aligned_cols=120 Identities=18% Similarity=0.310 Sum_probs=64.6
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHH----------------HHhHh----HHHHHH
Q 022680 108 ACGV-VSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLE----------------EDMKS----SATILR 166 (293)
Q Consensus 108 vwg~-V~LV~AV~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLE----------------e~vrs----~~t~ir 166 (293)
++++ |.+++++++|.|+|||.-.+|..-..+-..=...++...|.|+. ++... ...-|.
T Consensus 6 ii~i~ii~i~~~~~~~~~rr~~~~~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie 85 (569)
T PRK04778 6 IIAIVVIIIIAYLAGLILRKRNYKRIDELEERKQELENLPVNDELEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPDIE 85 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3444 44556667889999998887765544321222344444444433 22221 222233
Q ss_pred HHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022680 167 VLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIG 243 (293)
Q Consensus 167 vLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~KQleLIL~ig 243 (293)
-+--.+|..--+||+.+ -..+..-+-...+..|..+.+|+..|.-+-++..++=+.|-.+.
T Consensus 86 ~~l~~ae~~~~~~~f~~----------------a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~ 146 (569)
T PRK04778 86 EQLFEAEELNDKFRFRK----------------AKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLK 146 (569)
T ss_pred HHHHHHHHHHhcccHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444433333321 12334445556677778888888887777777777766665544
No 23
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=59.98 E-value=1.6e+02 Score=28.29 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 022680 198 QKNSEATRALAMQGDVLEKELGEIQKVLLAM 228 (293)
Q Consensus 198 qknSeatraLA~redlLEkEL~eiQ~vl~AM 228 (293)
++..+.+..|..+.+-+|+.+.++|.-+.+|
T Consensus 89 ~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l 119 (372)
T PF04375_consen 89 KQQQEQLQQLQQELAQLQQQLAELQQQLAAL 119 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555544444
No 24
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.13 E-value=1.1e+02 Score=28.60 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=65.5
Q ss_pred cchhHHHHHHHHHHhHhHHHHHHHHHHHH-------Hhhcceeee---ehhhccchHHHHHHHHhhhhHHHHH-HHhhhh
Q 022680 144 SVNLVGRIEKLEEDMKSSATILRVLSRQL-------EKLGVRFRV---TRKALKDPITQAAALAQKNSEATRA-LAMQGD 212 (293)
Q Consensus 144 ~~~l~~RiekLEe~vrs~~t~irvLSRql-------EKLGvRfRv---trRtLrdPI~etaAlAqknSeatra-LA~red 212 (293)
=..+.+.+.+|++.+...-.++-.+.+.- ...|-=|-+ .=.+|-+|+++.|+...+++.++.. +..-.+
T Consensus 56 F~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~ 135 (243)
T cd07666 56 FTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSE 135 (243)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999999888766666555332 233333333 1234889999999999999999988 444555
Q ss_pred hHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 022680 213 VLEKELGEI----QKVLLAMQEQQQKQLELI 239 (293)
Q Consensus 213 lLEkEL~ei----Q~vl~AMQeqq~KQleLI 239 (293)
-|..=|++. +++-..|.+..++|.++=
T Consensus 136 ~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le 166 (243)
T cd07666 136 QLLPVIHEYVLYSETLMGVIKRRDQIQAELD 166 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666664 455556677788888876
No 25
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.67 E-value=1.3e+02 Score=29.56 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHhHhHH---HHHHHHHHHHHhhcceee-eehhh---ccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHH
Q 022680 146 NLVGRIEKLEEDMKSSA---TILRVLSRQLEKLGVRFR-VTRKA---LKDPITQAAALAQKNSEATRALAMQGDVLEKEL 218 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~---t~irvLSRqlEKLGvRfR-vtrRt---LrdPI~etaAlAqknSeatraLA~redlLEkEL 218 (293)
.|..+|.+||..+...- .++..--..|+.++-... -.+.. -..++.+..+..+-..+.+..+-.+..-+|.++
T Consensus 75 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (525)
T TIGR02231 75 ELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRI 154 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777776665553 344444455667664321 11111 123666777766666666655555555555555
Q ss_pred HHHHHHHHHHH
Q 022680 219 GEIQKVLLAMQ 229 (293)
Q Consensus 219 ~eiQ~vl~AMQ 229 (293)
+++++-+..+|
T Consensus 155 ~~~~~~l~~l~ 165 (525)
T TIGR02231 155 RELEKQLSELQ 165 (525)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 26
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=54.54 E-value=22 Score=27.61 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 022680 109 CGVVSLVCGVWIGAIIRRRQWRRVCGEKAR 138 (293)
Q Consensus 109 wg~V~LV~AV~iGaiIRRRQW~Ri~~~~gr 138 (293)
+.++.|++|+++|.++-|++-..-.++..+
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k~l~~NPp 31 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEKQLKENPP 31 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 567889999999999999999988888766
No 27
>PRK01844 hypothetical protein; Provisional
Probab=52.44 E-value=26 Score=27.85 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 022680 108 ACGVVSLVCGVWIGAIIRRRQWRRVCGEKAR 138 (293)
Q Consensus 108 vwg~V~LV~AV~iGaiIRRRQW~Ri~~~~gr 138 (293)
+..++.|++|+++|.+|-|++-....++.++
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k~lk~NPp 38 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMNYLQKNPP 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3456779999999999999999999999877
No 28
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=52.36 E-value=1.5e+02 Score=25.26 Aligned_cols=99 Identities=26% Similarity=0.286 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhc-------ceeee-----ehhhccchHHHHHHHHhhhhHHHHHHHhhhh-
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLG-------VRFRV-----TRKALKDPITQAAALAQKNSEATRALAMQGD- 212 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLG-------vRfRv-----trRtLrdPI~etaAlAqknSeatraLA~red- 212 (293)
.....+++||+.++.....+..+..+-..+| .-|.. .-..|.+++.+.+....+.+++...++..+.
T Consensus 28 ~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~ 107 (236)
T PF09325_consen 28 EIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQANQEEE 107 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4566777777777776665555544433333 22221 1256899999999999999999999888754
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022680 213 ----VLEKELGEIQKVLLAMQEQQQKQLELILAIGK 244 (293)
Q Consensus 213 ----lLEkEL~eiQ~vl~AMQeqq~KQleLIL~ig~ 244 (293)
.|..-++-+.+|-.++.....++.++..+...
T Consensus 108 ~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~ 143 (236)
T PF09325_consen 108 TLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKE 143 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666667666777666654433
No 29
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.06 E-value=1.9e+02 Score=27.05 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=62.8
Q ss_pred cchhHHHHHHHHHHhHhHHHHHHHHHHHH-------Hhhcceeee---ehhhccchHHHHHHHHhhhhHHHHHHHhhh-h
Q 022680 144 SVNLVGRIEKLEEDMKSSATILRVLSRQL-------EKLGVRFRV---TRKALKDPITQAAALAQKNSEATRALAMQG-D 212 (293)
Q Consensus 144 ~~~l~~RiekLEe~vrs~~t~irvLSRql-------EKLGvRfRv---trRtLrdPI~etaAlAqknSeatraLA~re-d 212 (293)
=..+..++.+|++.+...-.+.-.++|-. ..+|.=|.- .=.+|-+|++..++...++|.+++-|..-. +
T Consensus 53 F~e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~ 132 (240)
T cd07667 53 FAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTE 132 (240)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44667788888888777655554444322 234443332 235799999999999999999999988755 3
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 022680 213 VLEKELGEIQKVLLAM----QEQQQKQLELI 239 (293)
Q Consensus 213 lLEkEL~eiQ~vl~AM----Qeqq~KQleLI 239 (293)
-+=.-|++...-..+| --..+||+|+=
T Consensus 133 ~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E 163 (240)
T cd07667 133 DFLPVLREYILYSESMKNVLKKRDQVQAEYE 163 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566655544444 44577887753
No 30
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=49.72 E-value=1.9e+02 Score=25.84 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhH
Q 022680 123 IIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSE 202 (293)
Q Consensus 123 iIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSe 202 (293)
+|.+--|.+|.+. |-.|=.++++++...-..-.-.-..+++.--...-.|..-+.=|.++...+++..+
T Consensus 69 lL~k~~~~pI~~v-----------Le~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e 137 (204)
T PRK09174 69 FMSRVILPRIGGI-----------IETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAE 137 (204)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777665543 66777777777776655544444444443333334445555555555555555444
Q ss_pred HHHHH
Q 022680 203 ATRAL 207 (293)
Q Consensus 203 atraL 207 (293)
..+.-
T Consensus 138 ~~~~~ 142 (204)
T PRK09174 138 AERAA 142 (204)
T ss_pred HHHHH
Confidence 44433
No 31
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=48.73 E-value=1.2e+02 Score=23.06 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhccee---eeehhhccchHHHHHHHHhhhhHHHHHHHh
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRF---RVTRKALKDPITQAAALAQKNSEATRALAM 209 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRf---RvtrRtLrdPI~etaAlAqknSeatraLA~ 209 (293)
.+...+..+..++...-+-+..|.+..+++|.-. ...+..|..=+.++-+++++....++.|..
T Consensus 5 ~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~ 71 (117)
T smart00503 5 EFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEK 71 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777778888888887554 234555666666666666666666665543
No 32
>PRK00523 hypothetical protein; Provisional
Probab=48.56 E-value=32 Score=27.42 Aligned_cols=31 Identities=19% Similarity=0.424 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 022680 108 ACGVVSLVCGVWIGAIIRRRQWRRVCGEKAR 138 (293)
Q Consensus 108 vwg~V~LV~AV~iGaiIRRRQW~Ri~~~~gr 138 (293)
...++.|++|+++|.+|-|++-+...++.++
T Consensus 9 ~l~i~~li~G~~~Gffiark~~~k~l~~NPp 39 (72)
T PRK00523 9 GLGIPLLIVGGIIGYFVSKKMFKKQIRENPP 39 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 3456678999999999999999999998877
No 33
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=46.82 E-value=2.2e+02 Score=25.57 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=12.0
Q ss_pred eehhhccchHHHHHHHHh
Q 022680 181 VTRKALKDPITQAAALAQ 198 (293)
Q Consensus 181 vtrRtLrdPI~etaAlAq 198 (293)
..-..|+.|++.....++
T Consensus 262 ~~~h~l~~pl~~i~~~~~ 279 (475)
T PRK11100 262 TLTHELKSPLAAIRGAAE 279 (475)
T ss_pred HhhhhhcCcHHHHHHHHH
Confidence 345678889887655544
No 34
>PRK11637 AmiB activator; Provisional
Probab=45.58 E-value=2.9e+02 Score=26.61 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVL 225 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl 225 (293)
++..+++.+++.+...-.-+.-+..++.++=-.. ..|..=|.++.....+..+.+..+-.+.+-+++||.+.|+-+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l----~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQL----KKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444433333333221110 112222333333333344444444555555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 022680 226 LAMQEQQQKQLEL 238 (293)
Q Consensus 226 ~AMQeqq~KQleL 238 (293)
...+++-.+++.-
T Consensus 120 ~~~~~~l~~rlra 132 (428)
T PRK11637 120 AAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444433
No 35
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=45.33 E-value=23 Score=26.45 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 022680 107 LACGVVSLVCGVWIGAIIRRRQWR 130 (293)
Q Consensus 107 ~vwg~V~LV~AV~iGaiIRRRQW~ 130 (293)
-+|.++.+|.||+||-|.=.|.=+
T Consensus 4 ~~wlIIviVlgvIigNia~LK~sA 27 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAALKYSA 27 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHhc
Confidence 479999999999999887666543
No 36
>KOG3165 consensus Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=43.47 E-value=8.9 Score=35.19 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=19.5
Q ss_pred HHHHhhcceeeeehhhccchHH
Q 022680 170 RQLEKLGVRFRVTRKALKDPIT 191 (293)
Q Consensus 170 RqlEKLGvRfRvtrRtLrdPI~ 191 (293)
-.|||||-+|||.=|-+|||=-
T Consensus 105 aELEkLg~kyrvALri~kDpr~ 126 (195)
T KOG3165|consen 105 AELEKLGQKYRVALRIAKDPRF 126 (195)
T ss_pred HHHHHhcchhhhhhhhhcCCcc
Confidence 4699999999999999999943
No 37
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=42.72 E-value=1.6e+02 Score=22.89 Aligned_cols=64 Identities=30% Similarity=0.321 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhh-HHHHHHHHHHHH
Q 022680 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDV-LEKELGEIQKVL 225 (293)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redl-LEkEL~eiQ~vl 225 (293)
|.+||++|...++-....+.....+-|.|-. .+-+-||++|.. |.-+ --..+.|++.+|
T Consensus 3 L~~~ie~L~~~n~~L~~~le~~k~~se~Ls~-----------------~lgk~es~~~al---rlal~ys~r~~e~~~~l 62 (67)
T PF10506_consen 3 LKRRIEELKSQNEMLSSTLEERKQQSEELSM-----------------DLGKYESNATAL---RLALKYSERCKEAYEVL 62 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhhhHHH---HHHHHHHHHHHHHHHHH
Confidence 6788999888887777666666666665532 233344444433 1110 112567888999
Q ss_pred HHHHH
Q 022680 226 LAMQE 230 (293)
Q Consensus 226 ~AMQe 230 (293)
+||+|
T Consensus 63 lal~E 67 (67)
T PF10506_consen 63 LALVE 67 (67)
T ss_pred HHhhC
Confidence 99875
No 38
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=41.71 E-value=2.6e+02 Score=25.15 Aligned_cols=84 Identities=24% Similarity=0.245 Sum_probs=62.1
Q ss_pred cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcc-eeeeehhhccchHHHHHHHHhhhhHHH--HHHHhhhhhHHHHHHH
Q 022680 144 SVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGV-RFRVTRKALKDPITQAAALAQKNSEAT--RALAMQGDVLEKELGE 220 (293)
Q Consensus 144 ~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGv-RfRvtrRtLrdPI~etaAlAqknSeat--raLA~redlLEkEL~e 220 (293)
......|...|+..+..+..-|..+-.++..||. -+-+.-.+ +.+..+.|+.+=+.. |-+..+...-|.|+++
T Consensus 82 t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~----l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~ 157 (264)
T PF06008_consen 82 TERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSED----LQRALAEAQRMLEEMRKRDFTPQRQNAEDELKE 157 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHH----HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 3467788999999999999999999999999998 22222222 233444444444444 3467788899999999
Q ss_pred HHHHHHHHHHH
Q 022680 221 IQKVLLAMQEQ 231 (293)
Q Consensus 221 iQ~vl~AMQeq 231 (293)
-+.+|..++..
T Consensus 158 A~~LL~~v~~~ 168 (264)
T PF06008_consen 158 AEDLLSRVQKW 168 (264)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 39
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=39.63 E-value=2.4e+02 Score=24.13 Aligned_cols=115 Identities=14% Similarity=0.114 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVL 225 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl 225 (293)
-+..|-+++.+++...-..-.-....+...--...-.|..-.+=|.++.+.|++..+....-|.++ .++.+.+.+.-+
T Consensus 52 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~e--a~~~~~~a~~~i 129 (184)
T CHL00019 52 LLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKED--LERLENYKNETI 129 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 456676677766666655555544444444444444555555556666666666555444444332 445555555555
Q ss_pred HHHHHHHHHHH--HHH-HHHhhcccccccccCCcccchhh
Q 022680 226 LAMQEQQQKQL--ELI-LAIGKTGKLFENRQEPSQEQDKL 262 (293)
Q Consensus 226 ~AMQeqq~KQl--eLI-L~ig~a~~~~~~r~~~~~~~~~~ 262 (293)
....+.-.++| ++. +++-.|+++.....+....+..|
T Consensus 130 e~Ek~~a~~~l~~ei~~lav~~A~kil~~~ld~~~~~~li 169 (184)
T CHL00019 130 RFEQQRAINQVRQQVFQLALQRALGTLNSCLNNELHLRTI 169 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHH
Confidence 55555555555 344 88888999888777655554444
No 40
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.45 E-value=3.9e+02 Score=26.38 Aligned_cols=98 Identities=19% Similarity=0.313 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccch
Q 022680 112 VSLVCGVWIGAIIRRRQWR--RVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDP 189 (293)
Q Consensus 112 V~LV~AV~iGaiIRRRQW~--Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdP 189 (293)
..+.+|++-|+..+-|+|- ++..+. . .-+.+=...|-+.+....+++..|.-++-+. ++=
T Consensus 90 Avi~aGi~y~~y~~~K~YV~P~~l~~~-~------~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v-----------~q~ 151 (300)
T KOG2629|consen 90 AVILAGIAYAAYRFVKSYVLPRFLGES-K------DKLEADKRQLDDQFDKAAKSLNALMDEVAQV-----------SQL 151 (300)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhCcc-c------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence 3455778888999999995 333222 1 1344444455555555556555555544332 111
Q ss_pred HHHHHHHHhhhhHHHHHHH-------hhhhhHHHHHHHHHHHHHHHHH
Q 022680 190 ITQAAALAQKNSEATRALA-------MQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 190 I~etaAlAqknSeatraLA-------~redlLEkEL~eiQ~vl~AMQe 230 (293)
+.+++. +.++++..|. .-.+-||.|+.-|-..|+-|+.
T Consensus 152 ~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~ 196 (300)
T KOG2629|consen 152 LATQQS---ELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSN 196 (300)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc
Confidence 222221 2222332222 2355699999999999888863
No 41
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=39.23 E-value=4.4e+02 Score=26.93 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhcccc---ccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhc----------cchH
Q 022680 124 IRRRQWRRVCGEKAR---AEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKAL----------KDPI 190 (293)
Q Consensus 124 IRRRQW~Ri~~~~gr---~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtL----------rdPI 190 (293)
=|+.||++-...--+ .....-..|-.=|.++|+++.+.-..+......+.|+.-++......| ++=+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 377788743222111 011223455666677777777766666666666666555544333222 2222
Q ss_pred HHHH-------------------------HHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022680 191 TQAA-------------------------ALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILA 241 (293)
Q Consensus 191 ~eta-------------------------AlAqknSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~KQleLIL~ 241 (293)
.+.. .++.--...+.++++++|-|++.+.++..+=-.|..+|+++..++..
T Consensus 118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~e 193 (420)
T COG4942 118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSE 193 (420)
T ss_pred HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 33333445667889999999999999988888888887777766644
No 42
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=37.98 E-value=2.5e+02 Score=31.60 Aligned_cols=105 Identities=20% Similarity=0.243 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehh--hc
Q 022680 109 CGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRK--AL 186 (293)
Q Consensus 109 wg~V~LV~AV~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrR--tL 186 (293)
.|..+-..+--||+-=|.|-.+|-.. .|..||..|++.+...-+-+..+..+++.|.-+.+.... .|
T Consensus 720 ~G~~~k~~a~~IG~~aR~~~R~~ri~-----------el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL 788 (1353)
T TIGR02680 720 RGAWAKPAAEYIGAAARERARLRRIA-----------ELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSL 788 (1353)
T ss_pred ecccCCcchhHhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHH
Confidence 34444556788998888876654333 477888888888888888888888888888777555443 45
Q ss_pred cchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHH
Q 022680 187 KDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKV 224 (293)
Q Consensus 187 rdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~v 224 (293)
++-..+..+...+-..+.+.++...+-++.-.+..+.+
T Consensus 789 ~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a 826 (1353)
T TIGR02680 789 RAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQA 826 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555566665555555544444333
No 43
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=35.53 E-value=1.4e+02 Score=23.59 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=30.8
Q ss_pred hHHHHHHHHhhh--hHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 189 PITQAAALAQKN--SEATRALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 189 PI~etaAlAqkn--SeatraLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
||.+...+-... .++...|..+.+-||+++.+++.....|..
T Consensus 60 sl~~i~~l~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 103 (108)
T cd01107 60 PLEEIKEILDADNDDELRKLLREKLAELEAEIEELQRILRLLED 103 (108)
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444 468888999999999999999887766653
No 44
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=35.48 E-value=1e+02 Score=25.43 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=30.7
Q ss_pred HHHHHHHHH------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 022680 96 LSISEVLWS------RVLACGVVSLVCGVWIGAIIRRRQWRRVCG 134 (293)
Q Consensus 96 LS~aEllC~------r~~vwg~V~LV~AV~iGaiIRRRQW~Ri~~ 134 (293)
.-++|+.+. .++.|-.+.+++..++|+++=|+|+.+.-.
T Consensus 7 ~~~~Ei~~~i~v~~~iG~~~tll~vi~t~~lG~~llr~~g~~~~~ 51 (119)
T PF04186_consen 7 YPILEIAVLILVGSWIGFLWTLLLVILTAVLGIWLLRRQGRRALR 51 (119)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456787774 567788888889999999999998886643
No 45
>PF07763 FEZ: FEZ-like protein; InterPro: IPR011680 This is a family of eukaryotic proteins thought to be involved in axonal outgrowth and fasciculation []. The N-terminal regions of these sequences are less conserved than the C-terminal regions, and are highly acidic []. The Caenorhabditis elegans homolog, UNC-76 (Q7JNU9 from SWISSPROT), may play structural and signalling roles in the control of axonal extension and adhesion (particularly in the presence of adjacent neuronal cells []) and these roles have also been postulated for other FEZ family proteins []. Certain homologs have been definitively found to interact with the N-terminal variable region (V1) of PKC-zeta, and this interaction causes cytoplasmic translocation of the FEZ family protein in mammalian neuronal cells []. The C-terminal region probably participates in the association with the regulatory domain of PKC-zeta []. The members of this family are predicted to form coiled-coil structures [, ], which may interact with members of the RhoA family of signalling proteins [], but are not thought to contain other characteristic protein motifs []. Certain members of this family are expressed almost exclusively in the brain, whereas others (such as FEZ2, Q76LN0 from SWISSPROT) are expressed in other tissues, and are thought to perform similar but unknown functions in these tissues [].
Probab=35.36 E-value=1.7e+02 Score=27.78 Aligned_cols=54 Identities=28% Similarity=0.446 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHhhhhHH-HHHHHhhhhh-HHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 022680 186 LKDPITQAAALAQKNSEA-TRALAMQGDV-LEKELGEI-QKVLLAMQEQQQKQLELI 239 (293)
Q Consensus 186 LrdPI~etaAlAqknSea-traLA~redl-LEkEL~ei-Q~vl~AMQeqq~KQleLI 239 (293)
|-+=..+.-++.+..||- +..||.|.++ +|||++-+ =++|+++|.-|..|-++.
T Consensus 176 L~~ll~e~E~~Ir~ySEeLV~qLA~RDELefEKEvKN~FIS~Ll~VQnrqre~r~~~ 232 (244)
T PF07763_consen 176 LNELLEEMETAIREYSEELVQQLALRDELEFEKEVKNTFISLLLEVQNRQREQRELA 232 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555543 4468888886 79999875 578888888887776764
No 46
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=35.17 E-value=2.8e+02 Score=23.49 Aligned_cols=138 Identities=9% Similarity=0.063 Sum_probs=67.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhh
Q 022680 106 VLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKA 185 (293)
Q Consensus 106 ~~vwg~V~LV~AV~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRt 185 (293)
.+.|+.|-+++=++|-.| .+--|..+.. -+-.|=+++++++...-..-.-....++..--+..-.|..
T Consensus 10 ~~~w~~i~f~il~~iL~~-~k~l~~pi~~-----------~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~e 77 (167)
T PRK14475 10 PEFWVGAGLLIFFGILIA-LKVLPKALAG-----------ALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQ 77 (167)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457877655533333222 3445644433 4667777777777776665555555555544444444555
Q ss_pred ccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHhhcccccccccCCcc
Q 022680 186 LKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLE--LI-LAIGKTGKLFENRQEPSQ 257 (293)
Q Consensus 186 LrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~KQle--LI-L~ig~a~~~~~~r~~~~~ 257 (293)
-.+=|.++-+.|++..+...+-|.. -.++-+...+.-+....+.-.+++. +. |++-.|+++...+.+...
T Consensus 78 a~~Ii~~A~~~a~~~~~~~~~~A~~--ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~kil~~~l~~~~ 150 (167)
T PRK14475 78 AAAMLAAAKADARRMEAEAKEKLEE--QIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETVLAARLAGAK 150 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHH
Confidence 5555555555554443333322211 1122222222222222222222222 12 777888888876665443
No 47
>PRK11637 AmiB activator; Provisional
Probab=35.05 E-value=2e+02 Score=27.69 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHH
Q 022680 148 VGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQK 223 (293)
Q Consensus 148 ~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~ 223 (293)
...|..++...+..-.-+..+.++++++.-.++-+.+.|..==.+...+-++..+.-..+..+.+.|.+-++...+
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555556666666666666666655555555444444555555555555555555555555555555
No 48
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=34.64 E-value=2.9e+02 Score=23.45 Aligned_cols=115 Identities=21% Similarity=0.163 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVL 225 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl 225 (293)
-+..|=.++++++...-..-.-....+++.--+..-.|..-..=+.++.+.|++..+....-| ..-.|+.+...+..+
T Consensus 47 ~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A--~~e~~~~~~~a~~~i 124 (174)
T PRK07352 47 ILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQA--IEDMARLKQTAAADL 124 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 466677777777666655544444444444334444455555555666666655544444333 233455566666666
Q ss_pred HHHHHHHHHHH--HHH-HHHhhcccccccccCCcccchhh
Q 022680 226 LAMQEQQQKQL--ELI-LAIGKTGKLFENRQEPSQEQDKL 262 (293)
Q Consensus 226 ~AMQeqq~KQl--eLI-L~ig~a~~~~~~r~~~~~~~~~~ 262 (293)
......-.++| +++ +++-.|+++.....+....+..|
T Consensus 125 ~~e~~~a~~~l~~qi~~la~~~A~kil~~~l~~~~~~~li 164 (174)
T PRK07352 125 SAEQERVIAQLRREAAELAIAKAESQLPGRLDEDAQQRLI 164 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHH
Confidence 66666656666 445 78888888887777654444333
No 49
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=34.54 E-value=3.1e+02 Score=23.85 Aligned_cols=92 Identities=22% Similarity=0.284 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 022680 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLL 226 (293)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~ 226 (293)
...|++.|++.+...-.-+...-+.++++-.-..--+..|. ......++..+....+-.-.+-.+..+..+++.+.
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 143 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS----ASQDLVESRQEQLEELQNELEERKQRLSQLQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 022680 227 AMQEQQQKQLELILAI 242 (293)
Q Consensus 227 AMQeqq~KQleLIL~i 242 (293)
.-+.+--.+|.-|.-|
T Consensus 144 ~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 144 RRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHhCc
No 50
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=34.32 E-value=1.7e+02 Score=23.10 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=20.3
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 022680 201 SEATRALAMQGDVLEKELGEIQKVLLAMQ 229 (293)
Q Consensus 201 SeatraLA~redlLEkEL~eiQ~vl~AMQ 229 (293)
.+....|..+.+-||+++.+++.+...++
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (123)
T cd04770 78 AEVRALLEEKLAEVEAKIAELQALRAELA 106 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888888888777665554
No 51
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=34.28 E-value=5e+02 Score=26.14 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=20.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022680 208 AMQGDVLEKELGEIQKVLLAMQEQQQKQLELIL 240 (293)
Q Consensus 208 A~redlLEkEL~eiQ~vl~AMQeqq~KQleLIL 240 (293)
..-.+.|++++.+.+....+++++++. |+.|+
T Consensus 130 ~~~~~~L~~~i~~r~~~~~~l~~~~~~-l~~il 161 (779)
T PRK11091 130 QEAFEQLKNEIKEREETQIELEQQSSL-LRSFL 161 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 333456888888888877777666554 44443
No 52
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=34.21 E-value=1.3e+02 Score=23.46 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=22.1
Q ss_pred hHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 022680 189 PITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQ 229 (293)
Q Consensus 189 PI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~AMQ 229 (293)
||.+.+......+ ....+..+.+-||+++.+++..+..++
T Consensus 59 ~l~ei~~~~~~~~-~~~~l~~~~~~l~~~i~~l~~~~~~l~ 98 (102)
T cd04775 59 PLEEIAGCLAQPH-VQAILEERLQSLNREIQRLRQQQQVLA 98 (102)
T ss_pred CHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433322 345566667777777777766655543
No 53
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=34.15 E-value=28 Score=26.83 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=15.5
Q ss_pred hhhhhHH--HHHHHHHHHHHHHH
Q 022680 107 LACGVVS--LVCGVWIGAIIRRR 127 (293)
Q Consensus 107 ~vwg~V~--LV~AV~iGaiIRRR 127 (293)
=+|..|. +.+|+++|.+++||
T Consensus 72 ~P~~svgiAagvG~llG~Ll~RR 94 (94)
T PF05957_consen 72 NPWQSVGIAAGVGFLLGLLLRRR 94 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCC
Confidence 5666554 45678999999987
No 54
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=33.94 E-value=35 Score=25.54 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=20.1
Q ss_pred ccccccCCccchhHHHHHHHHHHhHhH
Q 022680 135 EKARAEGRESVNLVGRIEKLEEDMKSS 161 (293)
Q Consensus 135 ~~gr~~g~~~~~l~~RiekLEe~vrs~ 161 (293)
...+..-|....+.-|+.+||++|+..
T Consensus 4 ~~~Knv~G~~e~l~vrv~eLEeEV~~L 30 (48)
T PF14077_consen 4 TTEKNVLGDQEQLRVRVSELEEEVRTL 30 (48)
T ss_pred hhhccccCCcchheeeHHHHHHHHHHH
Confidence 334444456778999999999999864
No 55
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=32.96 E-value=5.7e+02 Score=26.40 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=9.9
Q ss_pred hhhccchHHHHHHHH
Q 022680 183 RKALKDPITQAAALA 197 (293)
Q Consensus 183 rRtLrdPI~etaAlA 197 (293)
--+||.|++.....+
T Consensus 493 SHELrtPL~~I~~~l 507 (703)
T TIGR03785 493 SHELRTPVAVVRSSL 507 (703)
T ss_pred HHHHhhHHHHHHHHH
Confidence 367888887665444
No 56
>PRK13694 hypothetical protein; Provisional
Probab=31.61 E-value=57 Score=26.70 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeee
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRV 181 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRv 181 (293)
.++.|||+||++-.....-++-.=-...--|..+-+
T Consensus 16 ~fIERIERLEeEkk~i~~dikdVyaEAK~~GfD~K~ 51 (83)
T PRK13694 16 AFIERIERLEEEKKTISDDIKDVYAEAKGNGFDVKA 51 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 579999999998555444444433333334443333
No 57
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=31.25 E-value=1.4e+02 Score=25.18 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=21.2
Q ss_pred chhHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 022680 145 VNLVGRIEKLEEDMKSSATILRVLSRQLE 173 (293)
Q Consensus 145 ~~l~~RiekLEe~vrs~~t~irvLSRqlE 173 (293)
..+.+||++||.+.++.-.+-.-|-|.+.
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIk 56 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIK 56 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999987665555444433
No 58
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=31.22 E-value=3.1e+02 Score=22.78 Aligned_cols=139 Identities=9% Similarity=0.118 Sum_probs=71.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhh
Q 022680 106 VLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKA 185 (293)
Q Consensus 106 ~~vwg~V~LV~AV~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRt 185 (293)
+++|+++-+++=+ .++.+--|..+.+ -+..|=.++++++...-..-.-....+++.--...=.+..
T Consensus 7 ~~~~~~inF~il~---~iL~~f~~kpi~~-----------~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~e 72 (159)
T PRK13461 7 TIIATIINFIILL---LILKHFFFDKIKA-----------VIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEE 72 (159)
T ss_pred HHHHHHHHHHHHH---HHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556555433222 2356666754433 4677777777777776555444444444443333334444
Q ss_pred ccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHhhcccccccccCCcccch
Q 022680 186 LKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQL--ELI-LAIGKTGKLFENRQEPSQEQD 260 (293)
Q Consensus 186 LrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~KQl--eLI-L~ig~a~~~~~~r~~~~~~~~ 260 (293)
-..=|.++.+.|++..+-...=|. +-.|+.+.+.+.-+...++.-.++| ++. +++--|+++.....+....+.
T Consensus 73 a~~ii~~a~~~a~~~~~~i~~~A~--~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a~kil~~~~~~~~~~~ 148 (159)
T PRK13461 73 GKKIVEEYKSKAENVYEEIVKEAH--EEADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLSSKALEESIDESEHRR 148 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHH
Confidence 444455555555444433333332 2234444444444444444444444 222 777788888777666544443
No 59
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=31.08 E-value=62 Score=27.62 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=34.1
Q ss_pred HHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccc---------------hHHHHHHHHhh
Q 022680 154 LEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKD---------------PITQAAALAQK 199 (293)
Q Consensus 154 LEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrd---------------PI~etaAlAqk 199 (293)
.|+++ ...+...|...|++.|+++-+||.+=.+ ++.+-+..|.+
T Consensus 23 ~E~~~--~l~ia~~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~ 81 (189)
T TIGR02883 23 LEKDI--TLEIALKLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINE 81 (189)
T ss_pred cHHHH--HHHHHHHHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHh
Confidence 57777 5577799999999999999999996543 56776666653
No 60
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.82 E-value=60 Score=25.92 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhcc
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALK 187 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLr 187 (293)
.++.||++||++-.....-++-.=....--|...-+.|+-++
T Consensus 8 ~~ieRiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~ 49 (74)
T PF10073_consen 8 QFIERIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIR 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 578999999999988888777777777777776665555443
No 61
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=30.70 E-value=2.6e+02 Score=22.43 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=20.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 022680 202 EATRALAMQGDVLEKELGEIQKVLLAMQ 229 (293)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vl~AMQ 229 (293)
++...|..+.+.+|+++.+++++...++
T Consensus 79 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~ 106 (127)
T cd04784 79 EVNALIDEHLAHVRARIAELQALEKQLQ 106 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888776655544
No 62
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.68 E-value=1.9e+02 Score=23.36 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhh-hHHHHHH
Q 022680 190 ITQAAALAQKNSEATRALAMQGD-VLEKELG 219 (293)
Q Consensus 190 I~etaAlAqknSeatraLA~red-lLEkEL~ 219 (293)
|.+.--.-+..++-++++.++-+ +||+||+
T Consensus 74 l~el~G~~~~l~~~l~~v~~~~~lLlE~~lk 104 (106)
T PF10805_consen 74 LAELRGELKELSARLQGVSHQLDLLLENELK 104 (106)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333444444555555444 3466654
No 63
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=30.67 E-value=1.2e+02 Score=27.43 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHHhhcceeeeehhhccchH
Q 022680 159 KSSATILRVLSRQLEKLGVRFRVTRKALKDPI 190 (293)
Q Consensus 159 rs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI 190 (293)
-....+...+.|.|+|...|+|-.++++..+=
T Consensus 143 ~~~~~~wE~l~~tl~k~~~rv~~~~~~~~~~~ 174 (253)
T PF09090_consen 143 LTRSYVWEILNRTLRKVTKRVRQVRKELEEAK 174 (253)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34578999999999999999998888875443
No 64
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.55 E-value=5.9e+02 Score=25.88 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHHH
Q 022680 111 VVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEE 156 (293)
Q Consensus 111 ~V~LV~AV~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe 156 (293)
+|.++++.++|.|+|||.-.+|..-..+--.=...++..+|.|+.+
T Consensus 6 ivi~l~~~~~~~~~rk~~~k~i~~Le~~k~~l~~~pv~~el~kvk~ 51 (560)
T PF06160_consen 6 IVIVLIIYIIGYIYRKRYYKEIDELEERKNELMNLPVADELSKVKK 51 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4556667777888888877766554333111223455555555443
No 65
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=30.48 E-value=2.8e+02 Score=23.27 Aligned_cols=71 Identities=25% Similarity=0.361 Sum_probs=45.8
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHhh-----cceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 022680 152 EKLEEDMKSSATILRVLSRQLEKL-----GVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLL 226 (293)
Q Consensus 152 ekLEe~vrs~~t~irvLSRqlEKL-----GvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~ 226 (293)
+..|+..+..++-|-..+++.|.| |+-. +=.+=....+.|..+|-++-.-|..-.+.-|+.|..++.++.
T Consensus 65 ~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~-----see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~ 139 (144)
T PF11221_consen 65 EEFEENIKELATDIIRKAKQIEYLIDSLPGIEV-----SEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIR 139 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888999999887 3221 112223455666677777766666666666666666666554
Q ss_pred H
Q 022680 227 A 227 (293)
Q Consensus 227 A 227 (293)
.
T Consensus 140 ~ 140 (144)
T PF11221_consen 140 E 140 (144)
T ss_dssp T
T ss_pred H
Confidence 3
No 66
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=30.44 E-value=1.7e+02 Score=27.50 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=37.5
Q ss_pred ccCCCCChhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-HHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHH
Q 022680 85 QTNDNFNLDSLLSISEVLWSRVLACGVVSLVCGVWIGAIIR-RRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSAT 163 (293)
Q Consensus 85 q~s~~~nlDslLS~aEllC~r~~vwg~V~LV~AV~iGaiIR-RRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t 163 (293)
++...||++.||..+|-+|.. |-+ -++- .-|-. |.+|. .+..-|+.||..|..+..
T Consensus 152 e~~~d~dvevLL~~ae~L~~v---YP~---~ga~--eki~~Lr~~y~---------------~l~~~i~~lE~~VaeQ~~ 208 (259)
T PF08657_consen 152 EIVEDVDVEVLLRGAEKLCNV---YPL---PGAR--EKIAALRQRYN---------------QLSNSIAYLEAEVAEQEA 208 (259)
T ss_pred cccccCCHHHHHHHHHHHHHh---CCC---hHHH--HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Confidence 346788999999999999963 422 2111 11111 22231 456668888887777765
Q ss_pred HHHHHHH
Q 022680 164 ILRVLSR 170 (293)
Q Consensus 164 ~irvLSR 170 (293)
-+..+.+
T Consensus 209 qL~~~n~ 215 (259)
T PF08657_consen 209 QLERMNR 215 (259)
T ss_pred HHHHHhc
Confidence 5555443
No 67
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.45 E-value=84 Score=29.19 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhc
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLG 176 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLG 176 (293)
-+..|..+||++++..-..+..|-+.+++|-
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999999999999988888873
No 68
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=29.42 E-value=1.8e+02 Score=26.01 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=33.7
Q ss_pred HHHHhhcceeeeehhhccchHHHHHHHHhhhhHH---HHHHH-------hhhhhHHHHHHHHHHHHHHHHHHH
Q 022680 170 RQLEKLGVRFRVTRKALKDPITQAAALAQKNSEA---TRALA-------MQGDVLEKELGEIQKVLLAMQEQQ 232 (293)
Q Consensus 170 RqlEKLGvRfRvtrRtLrdPI~etaAlAqknSea---traLA-------~redlLEkEL~eiQ~vl~AMQeqq 232 (293)
-.||++|..|+..+..|.. .-.+....... .+.+- +-.+-+|.++.+++.-+.-||++.
T Consensus 79 ~~LE~~GFnV~~l~~RL~k----LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 79 SELEEHGFNVKFLRSRLNK----LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQA 147 (190)
T ss_pred HHHHHcCCccHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3678888888777666543 22221111111 11111 123467888888888888888763
No 69
>PLN02372 violaxanthin de-epoxidase
Probab=28.80 E-value=6.8e+02 Score=26.04 Aligned_cols=23 Identities=17% Similarity=0.227 Sum_probs=13.2
Q ss_pred HHHHhhccccccCCccchhHHHHHH
Q 022680 129 WRRVCGEKARAEGRESVNLVGRIEK 153 (293)
Q Consensus 129 W~Ri~~~~gr~~g~~~~~l~~Riek 153 (293)
|.-.+...- +=|...+|+.||+|
T Consensus 346 f~~F~~tDN--sCgpep~l~~~l~~ 368 (455)
T PLN02372 346 FSDFVRTDN--TCGPEPPLLERLEK 368 (455)
T ss_pred HHHheeeCC--CCCCCchHHHHHHH
Confidence 555555432 22456678888765
No 70
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=28.04 E-value=1.9e+02 Score=24.91 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=29.3
Q ss_pred hHHHHHHHHh-hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022680 189 PITQAAALAQ-KNSEATRALAMQGDVLEKELGEIQKVLLAMQEQ 231 (293)
Q Consensus 189 PI~etaAlAq-knSeatraLA~redlLEkEL~eiQ~vl~AMQeq 231 (293)
||.+..++.. ...++...|..+.+.|++|+.+++.....++..
T Consensus 60 sL~eI~~ll~~~~~~~~~~L~~~~~~l~~ei~~L~~~~~~l~~l 103 (172)
T cd04790 60 SLEDIRSLLQQPGDDATDVLRRRLAELNREIQRLRQQQRAIATL 103 (172)
T ss_pred CHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555443 334556678888889999998888877766653
No 71
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=27.90 E-value=1e+02 Score=27.12 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhccee-----eeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022680 163 TILRVLSRQLEKLGVRF-----RVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQK 234 (293)
Q Consensus 163 t~irvLSRqlEKLGvRf-----RvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~K 234 (293)
.+..+|-.-..+-|+.. -+-- .+-||=. ++++-+.-++++ .+..=-+-||+|-.++++.+..||+++++
T Consensus 97 G~~glLl~~a~~~gi~ai~L~~e~p~-y~pDP~A-A~alL~~L~kll-gl~vd~~~L~e~Ae~ie~~~~~~~~~~~~ 170 (188)
T TIGR00162 97 GASGLLLGVSELEGIPGACLMGETPG-YMIDPKA-AKAVLEVLCKML-SLEVSVEALEERAKEMEKIIAKIKEMEEE 170 (188)
T ss_pred cHHHHHHHHHHHCCCCeEEEEEeCCC-CCCChHH-HHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555442 2222 2456632 333344455554 55566677899999999999999988875
No 72
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=27.88 E-value=57 Score=28.65 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 022680 107 LACGVVSLVCGVWIGAIIRRRQW 129 (293)
Q Consensus 107 ~vwg~V~LV~AV~iGaiIRRRQW 129 (293)
..||.+.+++.+++|.++|++.+
T Consensus 185 lgiG~v~I~~l~~~~~~l~~~r~ 207 (209)
T PF11353_consen 185 LGIGTVLIVLLILLGFLLRRRRL 207 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45799999999999999999865
No 73
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=27.68 E-value=1.3e+02 Score=31.05 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHH--HHHhhccccccCCccchhHHHHHHHHHHhHhHH
Q 022680 117 GVWIGAIIRRRQW--RRVCGEKARAEGRESVNLVGRIEKLEEDMKSSA 162 (293)
Q Consensus 117 AV~iGaiIRRRQW--~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~ 162 (293)
|+..|+-|-|.+= .|+.+|=++ +-.|++++-.-||++|..+
T Consensus 264 Gl~LGiaIqrlrelnqrL~~EL~~-----~raLaeqListEEsiRk~v 306 (497)
T COG3851 264 GLGLGIAIQRLRELNQRLQKELAR-----NRALAEQLISTEESIRKDV 306 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHhhHHHHHHHH
Confidence 4444444444221 255555333 4478889999999988764
No 74
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.56 E-value=3.8e+02 Score=22.80 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 022680 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLL 226 (293)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~ 226 (293)
+-.|..++|+.+.+.-.=+..|--+|+++--++.-... -+.+..... ...-.|-.|..+||.||....+-|.
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~----~lee~~~~~----~~~E~l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKE----KLEESEKRK----SNAEQLNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHH----HhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44566666777777777777777777777654432221 111221111 1222788999999999999888775
Q ss_pred HH
Q 022680 227 AM 228 (293)
Q Consensus 227 AM 228 (293)
--
T Consensus 98 e~ 99 (143)
T PF12718_consen 98 ET 99 (143)
T ss_pred HH
Confidence 43
No 75
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=27.35 E-value=3.9e+02 Score=22.70 Aligned_cols=140 Identities=12% Similarity=0.197 Sum_probs=85.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhc
Q 022680 107 LACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKAL 186 (293)
Q Consensus 107 ~vwg~V~LV~AV~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtL 186 (293)
++|+++-+++=+ .++.+--|..+.+ -+-.|=++++.++...-..-+-....+++.--+..-.+..-
T Consensus 19 ~~~~~i~Flil~---~iL~~~~~kpi~~-----------~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea 84 (173)
T PRK13460 19 VVWTLVTFLVVV---LVLKKFAWDVILK-----------ALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEA 84 (173)
T ss_pred HHHHHHHHHHHH---HHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556544333222 3356666755443 46778888888887777666666666666555555566666
Q ss_pred cchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHhhcccccccccCCcccchhh
Q 022680 187 KDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLE--LI-LAIGKTGKLFENRQEPSQEQDKL 262 (293)
Q Consensus 187 rdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~KQle--LI-L~ig~a~~~~~~r~~~~~~~~~~ 262 (293)
+.=+.++.+.|++..+....=|..+ .|+.+...+.-+....+.-.+||. +. |++-.|+++.....+....+..|
T Consensus 85 ~~ii~~A~~ea~~~~~~~~~~A~~e--a~~~~~~a~~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~~l~~~~~~~li 161 (173)
T PRK13460 85 NAIVAEAKSDALKLKNKLLEETNNE--VKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKVLEKQLKKEDYKAFI 161 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 6666666666666665555544433 455666666666666555555553 33 88888999888877665544444
No 76
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=27.11 E-value=4e+02 Score=22.75 Aligned_cols=126 Identities=11% Similarity=0.162 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhh
Q 022680 122 AIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNS 201 (293)
Q Consensus 122 aiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknS 201 (293)
.++.+--|..+.+ -+-.|=+++.+++...-..-.-....++..--+..-.|..-.+=+.++.+.|++..
T Consensus 33 ~lL~~~l~~pi~~-----------~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~ 101 (173)
T PRK13453 33 ALLKKFAWGPLKD-----------VMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQ 101 (173)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666655443 46677777777777776666665555555555555556666666666666666555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHhhcccccccccCCcccch
Q 022680 202 EATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQL--ELI-LAIGKTGKLFENRQEPSQEQD 260 (293)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vl~AMQeqq~KQl--eLI-L~ig~a~~~~~~r~~~~~~~~ 260 (293)
+....-|.. -.++.+.+.+.-+......-.++| +.. +++--|.++.....+....+.
T Consensus 102 ~~~~~~A~~--ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll~~~l~~~~~~~ 161 (173)
T PRK13453 102 EQIIHEANV--RANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRKEISEQDQKA 161 (173)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHH
Confidence 555444432 234444445555554444444444 222 677778887776665544333
No 77
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.08 E-value=1.1e+02 Score=25.19 Aligned_cols=42 Identities=24% Similarity=0.417 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhcc
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALK 187 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLr 187 (293)
.++.|||+||+.-.....=|.-.--.+.--|..+.+.|.-+|
T Consensus 18 afIerIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iir 59 (85)
T COG3750 18 AFIERIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 678999999998766555555444455555555555544433
No 78
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=27.01 E-value=2.6e+02 Score=24.34 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=40.2
Q ss_pred hhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022680 198 QKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIG 243 (293)
Q Consensus 198 qknSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~KQleLIL~ig 243 (293)
|+.+||-.-+-.|.|.+++||....+-+.-||+.-.||=+-+.-+.
T Consensus 65 qel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q 110 (120)
T KOG3478|consen 65 QELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQ 110 (120)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888899999999999999999999999999988775543
No 79
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=24.82 E-value=6.9e+02 Score=24.78 Aligned_cols=134 Identities=17% Similarity=0.154 Sum_probs=64.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhh
Q 022680 106 VLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKA 185 (293)
Q Consensus 106 ~~vwg~V~LV~AV~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRt 185 (293)
+++|+.+-+++=++ ++.+--|..+.+ -+..|=+++.+++...-..-..+....++.--...-.+..
T Consensus 3 t~i~qlInFlIl~~---lL~kfl~~Pi~~-----------~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~e 68 (445)
T PRK13428 3 TFIGQLIGFAVIVF---LVWRFVVPPVRR-----------LMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAE 68 (445)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666554433322 345666644433 4666777777776666554433333333222222223333
Q ss_pred ccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHhhcccccccccCC
Q 022680 186 LKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQL--ELI-LAIGKTGKLFENRQEP 255 (293)
Q Consensus 186 LrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~KQl--eLI-L~ig~a~~~~~~r~~~ 255 (293)
-+.=|.++.+.|++..+-...-|..+ .|+.+...++-+....++-.+|+ ++. +++..|+++.....+.
T Consensus 69 a~~Ii~~A~~~A~~~~~~~~~~A~~e--a~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~kil~~~l~d 139 (445)
T PRK13428 69 AARVVEEAREDAERIAEQLRAQADAE--AERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGELVRNHVAD 139 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33334444444444443333333332 34444444444443333333333 333 8889999999887743
No 80
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=24.57 E-value=3.2e+02 Score=21.80 Aligned_cols=41 Identities=10% Similarity=0.181 Sum_probs=23.3
Q ss_pred chHHHHHHHHhhh---hHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 022680 188 DPITQAAALAQKN---SEATRALAMQGDVLEKELGEIQKVLLAM 228 (293)
Q Consensus 188 dPI~etaAlAqkn---SeatraLA~redlLEkEL~eiQ~vl~AM 228 (293)
-||.+........ ......|..+.+.+++++.+++.+..-+
T Consensus 57 ~~L~eI~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~L 100 (120)
T cd04781 57 FSLDEIQAMLSHDGKPPIDRQLLKAKAAELDQQIQRLQAMRELL 100 (120)
T ss_pred CCHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555544332 1223466777777777777776665444
No 81
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=24.10 E-value=5.3e+02 Score=28.68 Aligned_cols=94 Identities=26% Similarity=0.309 Sum_probs=69.0
Q ss_pred cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHH
Q 022680 144 SVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQK 223 (293)
Q Consensus 144 ~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~ 223 (293)
=++=+.|.+++|. -+|-+-.++.|-|+..-.+...+- ..+.....-|-.+-+-||.||.|+.+
T Consensus 51 fv~evrRcdemeR-------klrfl~~ei~k~~i~~~~~~~~~~----------~p~~~~i~dle~~l~klE~el~eln~ 113 (829)
T KOG2189|consen 51 FVNEVRRCDEMER-------KLRFLESEIKKAGIPLPDLDESPP----------APPPREIIDLEEQLEKLESELRELNA 113 (829)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHhcCCCCCCccccCC----------CCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777664 467788899999998763332221 12233345566777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 022680 224 VLLAMQEQQQKQLELILAIGKTGKLFENRQE 254 (293)
Q Consensus 224 vl~AMQeqq~KQleLIL~ig~a~~~~~~r~~ 254 (293)
--.+++......+|+...+.+++..++....
T Consensus 114 n~~~L~~n~~eL~E~~~vl~~t~~Ff~~~~~ 144 (829)
T KOG2189|consen 114 NKEALKANYNELLELKYVLEKTDEFFSTSVQ 144 (829)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 9999999999999999999999988877443
No 82
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=23.90 E-value=6.4e+02 Score=24.08 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=12.6
Q ss_pred hhhhhHHHHHHHHHHHH-HHHHHHHHH
Q 022680 107 LACGVVSLVCGVWIGAI-IRRRQWRRV 132 (293)
Q Consensus 107 ~vwg~V~LV~AV~iGai-IRRRQW~Ri 132 (293)
..||.+.++.-.-.|.. |=+.-|+..
T Consensus 166 ~~~Gl~l~i~~~g~Glv~iP~~l~~~~ 192 (471)
T PF04791_consen 166 NFWGLFLFIILLGYGLVAIPRDLWRSS 192 (471)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhc
Confidence 45665555544444422 345556533
No 83
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.78 E-value=1.7e+02 Score=22.66 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=23.2
Q ss_pred hHHHHHHHHhhhh-HHHHHHHhhhhhHHHHHHHHHHH
Q 022680 189 PITQAAALAQKNS-EATRALAMQGDVLEKELGEIQKV 224 (293)
Q Consensus 189 PI~etaAlAqknS-eatraLA~redlLEkEL~eiQ~v 224 (293)
||.+.+.+-.... +....|..+.+.||+++.+++.+
T Consensus 59 ~l~eI~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~ 95 (96)
T cd04788 59 SLREIGRALDGPDFDPLELLRRQLARLEEQLELATRL 95 (96)
T ss_pred CHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444433322 55677888888889988888753
No 84
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.74 E-value=4.6e+02 Score=30.92 Aligned_cols=93 Identities=15% Similarity=0.162 Sum_probs=60.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHHHH---HHHHHHHHhhcceeeeeh
Q 022680 107 LACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATIL---RVLSRQLEKLGVRFRVTR 183 (293)
Q Consensus 107 ~vwg~V~LV~AV~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~i---rvLSRqlEKLGvRfRvtr 183 (293)
-.|-.++--.+..+..+|-|-+ ..+.+|.. ..+..++.++|+.+...-.++ -+-.-.+++|+--+-.+|
T Consensus 1167 ~~WD~il~~L~~rt~rl~~~A~---~l~~tGv~-----gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr 1238 (1758)
T KOG0994|consen 1167 QTWDAILQELALRTHRLINRAK---ELKQTGVL-----GAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLR 1238 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhhhccCc-----hhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 4566666666667775554433 33333332 278899999999888776665 345567888888888888
Q ss_pred hhccchHHHHHHHHhhhhHHHHHH
Q 022680 184 KALKDPITQAAALAQKNSEATRAL 207 (293)
Q Consensus 184 RtLrdPI~etaAlAqknSeatraL 207 (293)
|.|.+---...++-++.|.++-.+
T Consensus 1239 ~~l~~~~e~L~~~E~~Lsdi~~~~ 1262 (1758)
T KOG0994|consen 1239 RQLQALTEDLPQEEETLSDITNSL 1262 (1758)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhcc
Confidence 877665555555555666666554
No 85
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.68 E-value=3.5e+02 Score=26.08 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=20.9
Q ss_pred HHHHHhhcceeeeeh------hhccchHHHHHHHHhhh
Q 022680 169 SRQLEKLGVRFRVTR------KALKDPITQAAALAQKN 200 (293)
Q Consensus 169 SRqlEKLGvRfRvtr------RtLrdPI~etaAlAqkn 200 (293)
...+.+.|||+|+.. +.+++=|.++.+..+.|
T Consensus 147 ~~~~~~~~irir~iG~~~~Lp~~v~~~i~~~e~~T~~n 184 (296)
T PRK14827 147 RDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSN 184 (296)
T ss_pred HHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhcCC
Confidence 345788999999998 44444455554445444
No 86
>PHA02629 A-type inclusion body protein; Provisional
Probab=23.61 E-value=1.3e+02 Score=23.38 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHH
Q 022680 148 VGRIEKLEEDMKSSATILRVLSRQLE 173 (293)
Q Consensus 148 ~~RiekLEe~vrs~~t~irvLSRqlE 173 (293)
-.||+-||.++|..+..|.+|-.-+|
T Consensus 32 rk~iavleaelr~~metik~lekf~e 57 (61)
T PHA02629 32 RKIIAVLEAELRKSMETIKALEKFME 57 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999877665
No 87
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.60 E-value=2.3e+02 Score=21.98 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=26.0
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022680 200 NSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQK 234 (293)
Q Consensus 200 nSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~K 234 (293)
-.+|..-|..|.+.|++++.++++.+..++++-.+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~ 119 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITE 119 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888777765543
No 88
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.59 E-value=8.4e+02 Score=24.97 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=53.8
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 022680 149 GRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAM 228 (293)
Q Consensus 149 ~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~AM 228 (293)
.|+.....++...-.-|+.-..+..| |.+-|.+.-....+.....+..+.-.+-+++.|..+.+-+.++
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~k-----------L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAK-----------LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 45555555555555445444444444 3344444444445555566667777888999999999999999
Q ss_pred HHHHHHHHHHHH
Q 022680 229 QEQQQKQLELIL 240 (293)
Q Consensus 229 Qeqq~KQleLIL 240 (293)
+.|...|.+.+-
T Consensus 107 ~~q~r~qr~~La 118 (420)
T COG4942 107 EVQEREQRRRLA 118 (420)
T ss_pred HHHHHHHHHHHH
Confidence 999988887763
No 89
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=22.59 E-value=3.4e+02 Score=22.19 Aligned_cols=28 Identities=11% Similarity=0.342 Sum_probs=18.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 022680 202 EATRALAMQGDVLEKELGEIQKVLLAMQ 229 (293)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vl~AMQ 229 (293)
+....|..+.+.||+++.+++.....|+
T Consensus 81 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~ 108 (131)
T TIGR02043 81 EVKAIVDAKLELVDEKINELTKIRRSLK 108 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777666654444
No 90
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=22.15 E-value=1.4e+02 Score=26.81 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=28.6
Q ss_pred hhHHHHHHHHH-----------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 022680 93 DSLLSISEVLW-----------SRVLACGVVSLVCGVWIGAIIRRRQWRRVC 133 (293)
Q Consensus 93 DslLS~aEllC-----------~r~~vwg~V~LV~AV~iGaiIRRRQW~Ri~ 133 (293)
.-.|+++=..| .|.+.|+++.|++|.++|.++ -.|.+..
T Consensus 118 ~l~Lal~~~~~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l--~~~l~~~ 167 (194)
T PF11833_consen 118 GLQLALGLGACIYFLNRKERKLGRAFLWTLGGLVVGLILGSLL--ASWLPVD 167 (194)
T ss_pred chHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--Hhhcccc
Confidence 33455555566 278999999999999999988 4565443
No 91
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=22.05 E-value=4.9e+02 Score=22.05 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVL 225 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl 225 (293)
-+-.|=+++++++...-..-.-....+++.--+..-.|..-..=+.++.+.|++..+....-|. +-.++.+...+.-+
T Consensus 46 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~--~ea~~~~~~a~~~I 123 (175)
T PRK14472 46 ALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAH--TEAKKMIASAKEEI 123 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4667777777777777666655555555555555555555555555555555554444333333 23455555555555
Q ss_pred HHHHHHHHHHHH--HH-HHHhhcccccccccCCcccchh
Q 022680 226 LAMQEQQQKQLE--LI-LAIGKTGKLFENRQEPSQEQDK 261 (293)
Q Consensus 226 ~AMQeqq~KQle--LI-L~ig~a~~~~~~r~~~~~~~~~ 261 (293)
...++.-.+||. +. +++..|+++.....+....+..
T Consensus 124 ~~e~~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~l 162 (175)
T PRK14472 124 EQEKRRALDVLRNEVADLAVKGAEKIIRTSLDADKQKKV 162 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 555555555553 22 7888888888777665444433
No 92
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=22.04 E-value=3.3e+02 Score=22.64 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=17.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 022680 202 EATRALAMQGDVLEKELGEIQKVLLAMQ 229 (293)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vl~AMQ 229 (293)
+....|..+.+.+|+++.++++....|+
T Consensus 81 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~ 108 (140)
T PRK09514 81 EVKGIVDEKLAEVEAKIAELQHMRRSLQ 108 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777665544443
No 93
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=21.93 E-value=5.3e+02 Score=23.19 Aligned_cols=85 Identities=24% Similarity=0.275 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhh---ccchHHHHHHHHhhhhHHHHHHHh-----hhhhHHHHH
Q 022680 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKA---LKDPITQAAALAQKNSEATRALAM-----QGDVLEKEL 218 (293)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRt---LrdPI~etaAlAqknSeatraLA~-----redlLEkEL 218 (293)
+-.-+..|+.++.....=+...++..+++....--|... |..=|..+....+..-+-+..+.. ...=|.+.+
T Consensus 50 ~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l 129 (264)
T PF06008_consen 50 LEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRAL 129 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence 334466666666655555555555555555443333322 222233333333333333334444 455678899
Q ss_pred HHHHHHHHHHHHH
Q 022680 219 GEIQKVLLAMQEQ 231 (293)
Q Consensus 219 ~eiQ~vl~AMQeq 231 (293)
+|++..|..|+..
T Consensus 130 ~ea~~mL~emr~r 142 (264)
T PF06008_consen 130 AEAQRMLEEMRKR 142 (264)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999764
No 94
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.92 E-value=5.4e+02 Score=22.50 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=39.9
Q ss_pred hccchHHHHHHHHhhhhHHHHHHHhhhh-hHHHHHHHHHHHHH----HH--HHHHHHHHHHH
Q 022680 185 ALKDPITQAAALAQKNSEATRALAMQGD-VLEKELGEIQKVLL----AM--QEQQQKQLELI 239 (293)
Q Consensus 185 tLrdPI~etaAlAqknSeatraLA~red-lLEkEL~eiQ~vl~----AM--Qeqq~KQleLI 239 (293)
+|-+||..++.....++-++..|+...+ -++.=|+|.-.... .| ..+.+.|++++
T Consensus 60 ~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~y~~s~k~vlk~R~~K~~Q~e~l 121 (187)
T cd07629 60 ELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQFAGVVRELLKYRKLKHVQYEMT 121 (187)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999997755 47767777544333 33 34455566665
No 95
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=21.91 E-value=1.8e+02 Score=23.53 Aligned_cols=42 Identities=33% Similarity=0.453 Sum_probs=29.9
Q ss_pred HHHhHhHHHHHHHHHHHHHhhcceeeeehhhcc-chHHHHHHHHh
Q 022680 155 EEDMKSSATILRVLSRQLEKLGVRFRVTRKALK-DPITQAAALAQ 198 (293)
Q Consensus 155 Ee~vrs~~t~irvLSRqlEKLGvRfRvtrRtLr-dPI~etaAlAq 198 (293)
|.++- ..+...|...|++.|+++-+||.+=. .++.+-++.|.
T Consensus 22 E~~~~--l~ia~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an 64 (175)
T PF01520_consen 22 EKDIN--LDIALRLKKELEKHGIKVYLTRDNDSDVSLQERAALAN 64 (175)
T ss_dssp HHHHH--HHHHHHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHH
T ss_pred CCHHH--HHHHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH
Confidence 44443 35667788899999999999999821 25666666663
No 96
>PF11915 DUF3433: Protein of unknown function (DUF3433); InterPro: IPR021840 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 784 to 1240 amino acids in length.
Probab=21.81 E-value=1.1e+02 Score=23.11 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=18.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 022680 107 LACGVVSLVCGVWIGAIIRRRQ 128 (293)
Q Consensus 107 ~vwg~V~LV~AV~iGaiIRRRQ 128 (293)
++|.++|-.++++++.+.+.-.
T Consensus 3 ~~~~~lPtlv~v~i~~~w~~id 24 (92)
T PF11915_consen 3 FLWTFLPTLVAVLIALLWQSID 24 (92)
T ss_pred eehhHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998865443
No 97
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.80 E-value=1.9e+02 Score=22.26 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=26.8
Q ss_pred hhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022680 198 QKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQ 231 (293)
Q Consensus 198 qknSeatraLA~redlLEkEL~eiQ~vl~AMQeq 231 (293)
...++.+..|-.+.+-||+++..++..+.++..+
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688889999999999999998888776543
No 98
>PRK10404 hypothetical protein; Provisional
Probab=21.33 E-value=65 Score=26.26 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=16.6
Q ss_pred hhhhhhhHHH--HHHHHHHHHHHHH
Q 022680 105 RVLACGVVSL--VCGVWIGAIIRRR 127 (293)
Q Consensus 105 r~~vwg~V~L--V~AV~iGaiIRRR 127 (293)
+-=+|..|.. .+|+++|.+|.||
T Consensus 77 ~e~Pw~avGiaagvGlllG~Ll~RR 101 (101)
T PRK10404 77 HEKPWQGIGVGAAVGLVLGLLLARR 101 (101)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhcC
Confidence 4467776654 4578899998886
No 99
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.03 E-value=50 Score=28.87 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=21.7
Q ss_pred ChhhHHHHHHHH----H-HhhhhhhhHHHHHHHHHH
Q 022680 91 NLDSLLSISEVL----W-SRVLACGVVSLVCGVWIG 121 (293)
Q Consensus 91 nlDslLS~aEll----C-~r~~vwg~V~LV~AV~iG 121 (293)
|-|.||...-.. . .-++.||.+||++.+.|-
T Consensus 37 DKdellDViyW~rQVi~l~lGviwGi~pL~G~l~iv 72 (129)
T KOG3415|consen 37 DKDELLDVIYWIRQVIGLILGVIWGIIPLVGFLGIV 72 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHH
Confidence 667777654322 2 247999999999987764
No 100
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.01 E-value=5.2e+02 Score=30.05 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=31.5
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhh
Q 022680 149 GRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKA 185 (293)
Q Consensus 149 ~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRt 185 (293)
.=++++|..+..+....+++.-++.+++=++|-.|+.
T Consensus 778 ~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~ 814 (1293)
T KOG0996|consen 778 ESVEKLERALSKMSDKARQHQEQLHELEERVRKLRER 814 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999998888888776653
No 101
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=20.99 E-value=5.2e+02 Score=27.22 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=26.9
Q ss_pred CccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhc
Q 022680 142 RESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLG 176 (293)
Q Consensus 142 ~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLG 176 (293)
+.+-.+..+|.+||+..++-....+-=..-.+|+|
T Consensus 84 PgE~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g 118 (508)
T PF00901_consen 84 PGEQGLQRKLKELEDEQKEDEVREKHNKKIIEKFG 118 (508)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44567889999999999988766666566667777
No 102
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=20.82 E-value=5.9e+02 Score=22.49 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccc
Q 022680 211 GDVLEKELGEIQKVLLAMQEQQQKQLELI-LAIGKTGKL 248 (293)
Q Consensus 211 edlLEkEL~eiQ~vl~AMQeqq~KQleLI-L~ig~a~~~ 248 (293)
..+|++|+.++-++..-++.+- -=+|| |++.=+.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~i~~k~ 141 (155)
T PRK06569 105 KNSINQNIEDINLAAKQFRTNK--SEAIIKLAVNIIEKI 141 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 5689999999999888555543 33455 555544443
No 103
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.75 E-value=4.4e+02 Score=20.94 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=22.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 202 EATRALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
.....|..+.+.+|+++.++|..+..+..
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (116)
T cd04769 79 HLQQALEDKKQEIRAQITELQQLLARLDA 107 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888889888888887766653
No 104
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=20.69 E-value=4.8e+02 Score=26.30 Aligned_cols=82 Identities=16% Similarity=0.298 Sum_probs=53.5
Q ss_pred HHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhh
Q 022680 131 RVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQ 210 (293)
Q Consensus 131 Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~r 210 (293)
||..|..+-..+....|..=|+.+|..++....++.... |=++ .|-..+....+++..++...|-+=
T Consensus 297 rI~eEikkk~~kgs~gLLkEl~~ve~~vr~L~el~d~~~---------~p~~----~e~~~ev~~~V~EL~~~~~~L~~G 363 (389)
T PF05633_consen 297 RINEEIKKKERKGSCGLLKELQQVEASVRELHELIDSFQ---------FPLE----EEKEEEVREAVEELARVCEALSQG 363 (389)
T ss_pred HHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHhcc---------CCcc----hhHHHHHHHHHHHHHHHHHHHHcc
Confidence 555555443233356777777777777777776666332 2121 233456777888888888888888
Q ss_pred hhhHHHHHHHHHHHH
Q 022680 211 GDVLEKELGEIQKVL 225 (293)
Q Consensus 211 edlLEkEL~eiQ~vl 225 (293)
-|.||++++|.=+.+
T Consensus 364 LdpLerqVre~Fh~I 378 (389)
T PF05633_consen 364 LDPLERQVREVFHRI 378 (389)
T ss_pred cHHHHHHHHHHHHHH
Confidence 899999988875543
No 105
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.64 E-value=4.2e+02 Score=20.77 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=23.0
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 201 SEATRALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 201 SeatraLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
.+....|..+.+.||.++.+++..+..|..
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (113)
T cd01109 78 PERLELLEEHREELEEQIAELQETLAYLDY 107 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888888888776654
No 106
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=20.64 E-value=7.9e+02 Score=23.90 Aligned_cols=13 Identities=23% Similarity=-0.018 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 022680 114 LVCGVWIGAIIRR 126 (293)
Q Consensus 114 LV~AV~iGaiIRR 126 (293)
++++++++.+|++
T Consensus 202 ~~~~~~~~~~i~~ 214 (553)
T PRK15048 202 VLILLVAWYGIRR 214 (553)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445555554
No 107
>PRK09303 adaptive-response sensory kinase; Validated
Probab=20.48 E-value=6.8e+02 Score=23.10 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHH
Q 022680 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAA 195 (293)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaA 195 (293)
+..++.+|++++.........+..+++.++-=++..--+||.|++-...
T Consensus 123 ~~~~~~~l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~ 171 (380)
T PRK09303 123 YSQELLQLSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASL 171 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHH
Confidence 4556777777776666666666666666665566667889999975533
No 108
>PRK10132 hypothetical protein; Provisional
Probab=20.12 E-value=81 Score=26.10 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=16.3
Q ss_pred hhhhhhhHHH--HHHHHHHHHHHHH
Q 022680 105 RVLACGVVSL--VCGVWIGAIIRRR 127 (293)
Q Consensus 105 r~~vwg~V~L--V~AV~iGaiIRRR 127 (293)
+-=+|..|.. .+|+++|.+|.||
T Consensus 83 ~~~Pw~svgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 83 RERPWCSVGTAAAVGIFIGALLSLR 107 (108)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhcc
Confidence 3467777655 4577899998886
No 109
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=20.04 E-value=5.3e+02 Score=26.32 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=18.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHhhcc
Q 022680 150 RIEKLEEDMKSSATILRVLSRQLEKLGV 177 (293)
Q Consensus 150 RiekLEe~vrs~~t~irvLSRqlEKLGv 177 (293)
++.++++.....-.+++.|....++.|+
T Consensus 44 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~ 71 (646)
T PRK05771 44 RLRKLRSLLTKLSEALDKLRSYLPKLNP 71 (646)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4556666666666777777777777664
No 110
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=20.03 E-value=4.6e+02 Score=20.90 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhccee---eeehhhccchHHHHHHHHhhhhHHHHHHHhh
Q 022680 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRF---RVTRKALKDPITQAAALAQKNSEATRALAMQ 210 (293)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRf---RvtrRtLrdPI~etaAlAqknSeatraLA~r 210 (293)
+-..+..+...+...-..+..|.+..+++|.-. ...|+.|.+=+.++-..+.+....++.|...
T Consensus 4 F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~ 70 (151)
T cd00179 4 FFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEES 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666776543 3456666666667777777766666666543
Done!