Query 022680
Match_columns 293
No_of_seqs 20 out of 22
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 09:23:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 75.0 44 0.0015 30.6 12.3 72 147-218 461-532 (597)
2 2jwa_A Receptor tyrosine-prote 60.6 5.6 0.00019 27.9 2.5 17 112-128 23-39 (44)
3 2dnx_A Syntaxin-12; snare, HAB 47.6 1E+02 0.0035 24.3 11.2 96 144-239 9-118 (130)
4 1r8d_A Transcription activator 47.5 35 0.0012 25.4 5.3 29 202-230 75-103 (109)
5 2vz4_A Tipal, HTH-type transcr 44.9 24 0.00083 26.4 4.0 29 202-230 74-102 (108)
6 4fm3_A Uncharacterized hypothe 44.7 22 0.00075 28.3 3.9 32 190-221 66-97 (98)
7 3ghg_A Fibrinogen alpha chain; 43.4 1.3E+02 0.0044 30.4 9.9 64 179-242 87-150 (562)
8 3t97_B Nuclear pore complex pr 42.6 34 0.0012 25.6 4.4 37 203-239 4-44 (65)
9 1i84_S Smooth muscle myosin he 38.4 1.9E+02 0.0065 30.0 10.6 31 146-176 861-891 (1184)
10 1q08_A Zn(II)-responsive regul 37.5 1.1E+02 0.0037 21.9 6.5 29 202-230 39-67 (99)
11 4e29_A Chimeric WZZB chain len 36.0 1.2E+02 0.0042 26.9 7.8 80 196-277 115-194 (248)
12 3gpv_A Transcriptional regulat 35.5 1E+02 0.0035 24.5 6.5 30 201-230 94-123 (148)
13 2akf_A Coronin-1A; coiled coil 34.3 45 0.0016 22.1 3.5 23 153-175 3-25 (32)
14 4fla_A Regulation of nuclear P 34.0 1.6E+02 0.0055 24.4 7.7 90 143-237 23-114 (152)
15 3p7i_A PHND, subunit of alkylp 32.3 1.8E+02 0.0061 25.2 8.1 61 170-230 245-312 (321)
16 2xu6_A MDV1 coiled coil; prote 31.2 48 0.0016 25.4 3.7 66 166-231 3-71 (72)
17 3g67_A Methyl-accepting chemot 31.0 2.5E+02 0.0086 24.0 10.4 92 147-239 5-96 (213)
18 1r8e_A Multidrug-efflux transp 30.2 1.2E+02 0.0041 25.0 6.4 32 201-232 78-109 (278)
19 3gp4_A Transcriptional regulat 29.6 1.4E+02 0.0049 23.5 6.5 31 201-231 80-110 (142)
20 1q06_A Transcriptional regulat 29.2 1.5E+02 0.0052 23.0 6.5 30 201-230 78-107 (135)
21 3ibp_A Chromosome partition pr 27.6 1E+02 0.0035 28.8 6.0 44 149-194 3-46 (302)
22 4akv_A Sorting nexin-33; trans 27.3 2.7E+02 0.0091 25.4 8.7 63 185-247 250-313 (386)
23 3oja_B Anopheles plasmodium-re 27.1 1.2E+02 0.004 27.8 6.3 28 198-225 505-532 (597)
24 2qdq_A Talin-1; dimerisation d 26.6 80 0.0027 22.7 4.0 30 206-235 10-41 (50)
25 1iij_A ERBB-2 receptor protein 25.4 13 0.00046 24.9 -0.2 19 110-128 17-35 (35)
26 3n5l_A Binding protein compone 24.7 3.2E+02 0.011 23.2 8.8 62 169-231 235-304 (310)
27 1rtm_1 Mannose-binding protein 24.7 60 0.002 24.4 3.3 26 206-231 1-26 (149)
28 2dfs_A Myosin-5A; myosin-V, in 24.6 3.5E+02 0.012 28.4 9.9 10 214-223 1028-1037(1080)
29 3m91_A Proteasome-associated A 23.8 1.2E+02 0.0042 21.4 4.5 32 145-176 19-50 (51)
30 2ovc_A Potassium voltage-gated 23.7 46 0.0016 22.1 2.1 20 143-162 4-23 (33)
31 3nmd_A CGMP dependent protein 23.4 2.5E+02 0.0084 21.3 6.5 41 190-230 21-61 (72)
32 3uux_B Mitochondrial division 22.5 95 0.0032 28.3 4.6 68 164-231 157-227 (242)
33 3qao_A LMO0526 protein, MERR-l 22.0 1.3E+02 0.0045 25.9 5.3 42 189-230 62-104 (249)
34 2zqm_A Prefoldin beta subunit 22.0 2.1E+02 0.0072 21.0 5.8 79 147-229 25-111 (117)
35 4h22_A Leucine-rich repeat fli 21.8 2.7E+02 0.0093 22.4 6.7 60 146-219 34-93 (103)
36 1m1j_C Fibrinogen gamma chain; 21.6 5.2E+02 0.018 24.5 11.9 84 146-229 35-118 (409)
37 4gif_A Polycystic kidney disea 21.2 1.1E+02 0.0037 21.6 3.7 27 146-172 11-37 (45)
38 3hh0_A Transcriptional regulat 20.8 2.9E+02 0.0098 21.9 6.7 31 201-231 79-109 (146)
39 2zhg_A Redox-sensitive transcr 20.7 2E+02 0.0068 23.0 5.8 29 202-230 90-118 (154)
40 3na7_A HP0958; flagellar bioge 20.2 2E+02 0.0067 24.6 6.0 26 147-172 102-127 (256)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.98 E-value=44 Score=30.64 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHH
Q 022680 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKEL 218 (293)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL 218 (293)
+-.-+.+|++.....-..+..+...+++..-+.++....+..+..+....-++..+-...+...-..+++++
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 445667777777777788888888889888888888888888877666555555554444444444444333
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=60.60 E-value=5.6 Score=27.85 Aligned_cols=17 Identities=47% Similarity=0.790 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022680 112 VSLVCGVWIGAIIRRRQ 128 (293)
Q Consensus 112 V~LV~AV~iGaiIRRRQ 128 (293)
+.++.|++++.|+|||+
T Consensus 23 l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheehhh
Confidence 56677888899999986
No 3
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.62 E-value=1e+02 Score=24.32 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=66.2
Q ss_pred cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcce--eeeehhhccchHHHHHHHHhhhhHHHHHHHh------------
Q 022680 144 SVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVR--FRVTRKALKDPITQAAALAQKNSEATRALAM------------ 209 (293)
Q Consensus 144 ~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvR--fRvtrRtLrdPI~etaAlAqknSeatraLA~------------ 209 (293)
+.++-.=...+-..+-..-+-|.-|-|.+..||.. ..-.|.-|.+=+.+|-.++++.++.++-|..
T Consensus 9 ~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~ 88 (130)
T 2dnx_A 9 LRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQ 88 (130)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 44444434455555555566677888889999985 2334555666666778888888988888776
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022680 210 QGDVLEKELGEIQKVLLAMQEQQQKQLELI 239 (293)
Q Consensus 210 redlLEkEL~eiQ~vl~AMQeqq~KQleLI 239 (293)
+.-..||=..+.+.+|...|..|.+=.+--
T Consensus 89 ~k~q~~KL~~dF~~~L~~FQ~~Qr~~aeke 118 (130)
T 2dnx_A 89 QRLQKERLMNDFSAALNNFQAVQRRVSEKE 118 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222567778888899999999987655543
No 4
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=47.54 E-value=35 Score=25.43 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 202 EATRALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
+....|..+.+.|++++.+++..+..++.
T Consensus 75 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 103 (109)
T 1r8d_A 75 DRKAALQSQKEILMKKKQRMDEMIQTIDR 103 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668889999999999999988877664
No 5
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=44.87 E-value=24 Score=26.37 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=22.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 202 EATRALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
+....|..+.+.|++++.++|+.+..++.
T Consensus 74 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 102 (108)
T 2vz4_A 74 DPRAHLRRQHELLSARIGKLQKMAAAVEQ 102 (108)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888889999999999988877764
No 6
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=44.74 E-value=22 Score=28.30 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q 022680 190 ITQAAALAQKNSEATRALAMQGDVLEKELGEI 221 (293)
Q Consensus 190 I~etaAlAqknSeatraLA~redlLEkEL~ei 221 (293)
+.++-+++.|.-+++..|-.+++.|++||||.
T Consensus 66 LAeAka~~~Ka~~~~~el~~~I~~LrqEl~~~ 97 (98)
T 4fm3_A 66 LAESKVLTQKSKDQLGELDKSLKRLRKQLGET 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56788899999999999999999999999985
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=43.40 E-value=1.3e+02 Score=30.37 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=46.4
Q ss_pred eeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022680 179 FRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAI 242 (293)
Q Consensus 179 fRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~KQleLIL~i 242 (293)
++.+...||.=+.+....-....|++.-|-.+...|+.+|..--+.+-++|..=++|+.=|..|
T Consensus 87 ~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 87 TTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666665666777778889999999999887788888887777776655443
No 8
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=42.64 E-value=34 Score=25.65 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=27.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 022680 203 ATRALAMQGDVLEKELGEIQKVLLA----MQEQQQKQLELI 239 (293)
Q Consensus 203 atraLA~redlLEkEL~eiQ~vl~A----MQeqq~KQleLI 239 (293)
-|..=+.+.|.+++||.|+|+=..+ +.+.-+|+.||=
T Consensus 4 ~t~~H~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLs 44 (65)
T 3t97_B 4 MTKQHQTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLS 44 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455567889999999999986655 456677888773
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=38.42 E-value=1.9e+02 Score=30.05 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhc
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLG 176 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLG 176 (293)
.+..+++++++.+...-..+..+..++++|-
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le 891 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLC 891 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677666666666666666666663
No 10
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=37.51 E-value=1.1e+02 Score=21.86 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=22.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 202 EATRALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
+....|..+.+.+|+++.+++..+..++.
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 67 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQR 67 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888887776654
No 11
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=36.04 E-value=1.2e+02 Score=26.93 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=61.8
Q ss_pred HHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCcccchhhhcccccccccccc
Q 022680 196 LAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIGKTGKLFENRQEPSQEQDKLKTSDFIDGAKQME 275 (293)
Q Consensus 196 lAqknSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~KQleLIL~ig~a~~~~~~r~~~~~~~~~~et~~~~~~~~~~e 275 (293)
..+-+.++-..+..|..-|+.+|...+.++.+.++..-++|+-=|.|.+|.+|=+..... ++..-..-.|.=|.+-|+
T Consensus 115 ~~el~~~l~~~i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL~~AL~IA~aaGI~kP~~~~--~q~lsdd~lF~LGs~aL~ 192 (248)
T 4e29_A 115 NQELERDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIEEALRYADEAKITQPQIQQ--TQDVTQDTMFLLGSDALK 192 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCCS--CCCCCTTTGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccc--cccCCCchhhhhhHHHHH
Confidence 344567888899999999999999999999999999999999999999999875543332 333333445677777776
Q ss_pred cc
Q 022680 276 TQ 277 (293)
Q Consensus 276 ~~ 277 (293)
.+
T Consensus 193 Ak 194 (248)
T 4e29_A 193 SM 194 (248)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 12
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=35.45 E-value=1e+02 Score=24.45 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=22.1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 201 SEATRALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 201 SeatraLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
.+....|..+.+.|++++.++++.+..++.
T Consensus 94 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 123 (148)
T 3gpv_A 94 LHRLKLMKQQEANVLQLIQDTEKNLKKIQQ 123 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888877766654
No 13
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=34.35 E-value=45 Score=22.14 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=18.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhh
Q 022680 153 KLEEDMKSSATILRVLSRQLEKL 175 (293)
Q Consensus 153 kLEe~vrs~~t~irvLSRqlEKL 175 (293)
+|||++|..-+++.-|-..|++|
T Consensus 3 rlee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899998888888877777665
No 14
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=33.96 E-value=1.6e+02 Score=24.37 Aligned_cols=90 Identities=21% Similarity=0.233 Sum_probs=56.1
Q ss_pred ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeee--ehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q 022680 143 ESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRV--TRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGE 220 (293)
Q Consensus 143 ~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRv--trRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~e 220 (293)
...+|+.-+..||..-.+=+++=. .+.+|=+-|-= .-..|+| =.+...++++..||...|+.-..+||.|+.+
T Consensus 23 ~~~elik~L~~le~sassDa~vrq----~Ia~LP~eVsd~s~l~klkD-k~~~e~l~~~veeA~~~L~eYn~rL~~E~~d 97 (152)
T 4fla_A 23 LTEELIKALQDLENAASGDATVRQ----KIASLPQEVQDVSLLEKITD-KEAAERLSKTVDEACLLLAEYNGRLAAELED 97 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH----HHHTSCGGGTCGGGGGGCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccccchHHHHH----HHHcCCccccCHHHHHHccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777555444332 23333222110 0112222 2367889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022680 221 IQKVLLAMQEQQQKQLE 237 (293)
Q Consensus 221 iQ~vl~AMQeqq~KQle 237 (293)
-..++..+.+-.+-|=+
T Consensus 98 R~~L~~~L~~~~~~~~~ 114 (152)
T 4fla_A 98 RRQLARMLVEYTQNQKD 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88877666554443333
No 15
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=32.27 E-value=1.8e+02 Score=25.17 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=42.2
Q ss_pred HHHHhhcce-eeeehhhccchHHHHHHHHhhhhHHH------HHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 170 RQLEKLGVR-FRVTRKALKDPITQAAALAQKNSEAT------RALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 170 RqlEKLGvR-fRvtrRtLrdPI~etaAlAqknSeat------raLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
..++++|+. |...-..--+||++....-+++.-.. ..=..|..-+|++|.+++.-+-+|+.
T Consensus 245 ~~l~~~g~~gf~~~~~~dy~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (321)
T 3p7i_A 245 AVLERLGWAPFRASSDLQLVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALSA 312 (321)
T ss_dssp HHHHHHTEEEEEECCGGGGHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcCCeeeCCHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457789987 88888888899999876665433221 23345666778888888877666653
No 16
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=31.22 E-value=48 Score=25.38 Aligned_cols=66 Identities=23% Similarity=0.257 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHH---HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022680 166 RVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEA---TRALAMQGDVLEKELGEIQKVLLAMQEQ 231 (293)
Q Consensus 166 rvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSea---traLA~redlLEkEL~eiQ~vl~AMQeq 231 (293)
..+++.||=||||=-++--+.++==.+.+.|-..---+ ++.|-|.|-.||++|.++..-|.-|||-
T Consensus 3 ~~~~~~Leml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~qey 71 (72)
T 2xu6_A 3 QTLVNSLEFLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLEEY 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 35678888888887777777666555666665544444 4566688889999999998888877763
No 17
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=31.01 E-value=2.5e+02 Score=24.02 Aligned_cols=92 Identities=10% Similarity=0.123 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 022680 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLL 226 (293)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~ 226 (293)
+...+..|...+..++.-+...+.++...--...-.-..+.+-+.++.....+..+.+..+..+..-+.+.+.+|.+++.
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 84 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQ 84 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444433333322222222233344445566666666666666677777777777888888887
Q ss_pred HHHHHHHHHHHHH
Q 022680 227 AMQEQQQKQLELI 239 (293)
Q Consensus 227 AMQeqq~KQleLI 239 (293)
-+.+- ++|-.||
T Consensus 85 ~I~~I-a~qtnlL 96 (213)
T 3g67_A 85 NIMRI-ARETNIL 96 (213)
T ss_dssp HHHHH-HHHHHHH
T ss_pred HHHHH-HHHHHHH
Confidence 77664 5677766
No 18
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=30.17 E-value=1.2e+02 Score=24.99 Aligned_cols=32 Identities=9% Similarity=0.028 Sum_probs=25.4
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 022680 201 SEATRALAMQGDVLEKELGEIQKVLLAMQEQQ 232 (293)
Q Consensus 201 SeatraLA~redlLEkEL~eiQ~vl~AMQeqq 232 (293)
.+....|..+.+.|++++.++|+.+..++...
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (278)
T 1r8e_A 78 EELFAFYTEQERQIREKLDFLSALEQTISLVK 109 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999998888777643
No 19
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.59 E-value=1.4e+02 Score=23.54 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=21.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022680 201 SEATRALAMQGDVLEKELGEIQKVLLAMQEQ 231 (293)
Q Consensus 201 SeatraLA~redlLEkEL~eiQ~vl~AMQeq 231 (293)
.+....|..+.+.|++++.+++..+..+...
T Consensus 80 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 110 (142)
T 3gp4_A 80 EARAELLKKQRIELKNRIDVMQEALDRLDFK 110 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888888887777666543
No 20
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=29.17 E-value=1.5e+02 Score=23.01 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=23.0
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 201 SEATRALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 201 SeatraLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
.+....|..+.+.+|+++.+++..+..++.
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T 1q06_A 78 ADVKRRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888888888887776655
No 21
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=27.59 E-value=1e+02 Score=28.84 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=24.8
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHH
Q 022680 149 GRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAA 194 (293)
Q Consensus 149 ~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~eta 194 (293)
++|+.||+.+...+.--..+-++.+.|..++. +-+-+-|+-.+|
T Consensus 3 ~~~~~l~~~~~~~~e~r~~lr~~~eql~~~i~--~L~~~ap~W~~a 46 (302)
T 3ibp_A 3 HMIASLSDSVSNAREERMALRQEQEQLQSRIQ--SLMQRAPVWLAA 46 (302)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHChHHHHH
Confidence 67889999998888888888888888877653 223344554443
No 22
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=27.31 E-value=2.7e+02 Score=25.42 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=35.9
Q ss_pred hccchHHHHHHHHhhhhHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 022680 185 ALKDPITQAAALAQKNSEATRALAMQGDV-LEKELGEIQKVLLAMQEQQQKQLELILAIGKTGK 247 (293)
Q Consensus 185 tLrdPI~etaAlAqknSeatraLA~redl-LEkEL~eiQ~vl~AMQeqq~KQleLIL~ig~a~~ 247 (293)
.|...+.+++...++.++....-|.+++. |..-|.+-...+.++.+.=...-.-+....+|.+
T Consensus 250 ~Ls~aL~~l~~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~ea~k 313 (386)
T 4akv_A 250 ALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQR 313 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666555555433 6666777666666665543333334444444443
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.08 E-value=1.2e+02 Score=27.81 Aligned_cols=28 Identities=7% Similarity=-0.059 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 022680 198 QKNSEATRALAMQGDVLEKELGEIQKVL 225 (293)
Q Consensus 198 qknSeatraLA~redlLEkEL~eiQ~vl 225 (293)
++..+....+.++..-+|.++.+.++-.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 3334444444444444444444444444
No 24
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=26.61 E-value=80 Score=22.74 Aligned_cols=30 Identities=40% Similarity=0.505 Sum_probs=21.1
Q ss_pred HHHhhhhhH--HHHHHHHHHHHHHHHHHHHHH
Q 022680 206 ALAMQGDVL--EKELGEIQKVLLAMQEQQQKQ 235 (293)
Q Consensus 206 aLA~redlL--EkEL~eiQ~vl~AMQeqq~KQ 235 (293)
.+.+||++| |+||.+-++-|.++-.++-+.
T Consensus 10 Ei~Aqe~iLr~ErELEeAr~~La~iR~~kY~~ 41 (50)
T 2qdq_A 10 IIAAQEEMLRKERELEEARKKLAQIRQQQYKF 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677765 899999999998887765543
No 25
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.40 E-value=13 Score=24.94 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 022680 110 GVVSLVCGVWIGAIIRRRQ 128 (293)
Q Consensus 110 g~V~LV~AV~iGaiIRRRQ 128 (293)
..+.++.++.+|.+||||.
T Consensus 17 lll~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 17 VLLFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHHHhheEEeecC
Confidence 4455667888899999973
No 26
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=24.73 E-value=3.2e+02 Score=23.15 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=42.1
Q ss_pred HHHHHhhcce-eeeehhhccchHHHHHHHHhhhhHHH-------HHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022680 169 SRQLEKLGVR-FRVTRKALKDPITQAAALAQKNSEAT-------RALAMQGDVLEKELGEIQKVLLAMQEQ 231 (293)
Q Consensus 169 SRqlEKLGvR-fRvtrRtLrdPI~etaAlAqknSeat-------raLA~redlLEkEL~eiQ~vl~AMQeq 231 (293)
...++++|+. |...--.--+||++....=++ .++- ..=..|..-+|++|.++++.+-+|+..
T Consensus 235 ~~~l~~~g~~gf~~~~~~~y~~ir~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (310)
T 3n5l_A 235 KKVLADLQWSKFQASDDDQLLPIRQLELFKQR-TDVANNANLGAEEKAAKLKALDEELAKLEKRMAEREQK 304 (310)
T ss_dssp HHHHHHTTEEEEEECCGGGGHHHHHHHHHHHH-HHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccCceeCCHHHHHHHHHHHHHHHH-HHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4557889986 888878888999987443332 2221 233456677888888888877777643
No 27
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=24.73 E-value=60 Score=24.42 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=21.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022680 206 ALAMQGDVLEKELGEIQKVLLAMQEQ 231 (293)
Q Consensus 206 aLA~redlLEkEL~eiQ~vl~AMQeq 231 (293)
||.++.+.||+++..+|.-|..++..
T Consensus 1 ~~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 1 AIEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36677888899999999988888864
No 28
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.63 E-value=3.5e+02 Score=28.40 Aligned_cols=10 Identities=10% Similarity=0.189 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 022680 214 LEKELGEIQK 223 (293)
Q Consensus 214 LEkEL~eiQ~ 223 (293)
||+|...++.
T Consensus 1028 L~~e~~~L~q 1037 (1080)
T 2dfs_A 1028 LKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334333333
No 29
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.79 E-value=1.2e+02 Score=21.38 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhc
Q 022680 145 VNLVGRIEKLEEDMKSSATILRVLSRQLEKLG 176 (293)
Q Consensus 145 ~~l~~RiekLEe~vrs~~t~irvLSRqlEKLG 176 (293)
..|.+|=++|.+.++..-.=|..|.-+||||+
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36777888888888888888888888888886
No 30
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=23.67 E-value=46 Score=22.08 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=16.4
Q ss_pred ccchhHHHHHHHHHHhHhHH
Q 022680 143 ESVNLVGRIEKLEEDMKSSA 162 (293)
Q Consensus 143 ~~~~l~~RiekLEe~vrs~~ 162 (293)
...++.+|+.|+|+.|..+-
T Consensus 4 ~~~Sm~~Rl~kVE~qv~~md 23 (33)
T 2ovc_A 4 DEISMMGRVVKVEKQVQSIE 23 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 45688999999999987653
No 31
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.35 E-value=2.5e+02 Score=21.32 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 190 ITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 190 I~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
|.+.+.+-++--|-.+..-.+++.||++|.|-...+.-+|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444566666677777777776666655543
No 32
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=22.52 E-value=95 Score=28.25 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhh---hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022680 164 ILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKN---SEATRALAMQGDVLEKELGEIQKVLLAMQEQ 231 (293)
Q Consensus 164 ~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqkn---SeatraLA~redlLEkEL~eiQ~vl~AMQeq 231 (293)
....+.+.||=||||=.++..++++==.+.+.|-..- =+=++.|-+.|-.||.||.+++.-+.-+||.
T Consensus 157 ~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy 227 (242)
T 3uux_B 157 FSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEY 227 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788999999998888887777555555554443 3445566677888999999999988888874
No 33
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=22.05 E-value=1.3e+02 Score=25.93 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=27.7
Q ss_pred hHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 189 PITQAAALAQK-NSEATRALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 189 PI~etaAlAqk-nSeatraLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
||.+...+... ..+....|..+.+.|++++.+++..+..++.
T Consensus 62 sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~ 104 (249)
T 3qao_A 62 PLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDL 104 (249)
T ss_dssp CHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433332 2355677888889999999888888776654
No 34
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.99 E-value=2.1e+02 Score=21.02 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHHHhhcc---eeeeehhh-ccchHHHHHH----HHhhhhHHHHHHHhhhhhHHHHH
Q 022680 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGV---RFRVTRKA-LKDPITQAAA----LAQKNSEATRALAMQGDVLEKEL 218 (293)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGv---RfRvtrRt-LrdPI~etaA----lAqknSeatraLA~redlLEkEL 218 (293)
+...+..||...+..-.++ -.|+.|.- =++..+.. +.-|..++.. -.......+..|-.+.+-+++++
T Consensus 25 l~~q~~~l~~~~~e~~~~~----~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l 100 (117)
T 2zqm_A 25 VVQQKQKVQLELTEAKKAL----DEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKL 100 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544333 34444431 23443332 2233333322 22233344455555555666666
Q ss_pred HHHHHHHHHHH
Q 022680 219 GEIQKVLLAMQ 229 (293)
Q Consensus 219 ~eiQ~vl~AMQ 229 (293)
.+++.-|++|+
T Consensus 101 ~~lk~~l~~~~ 111 (117)
T 2zqm_A 101 KELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 35
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.81 E-value=2.7e+02 Score=22.40 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELG 219 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~ 219 (293)
-|+-.++.+||.+-..-.=.+-.+|.+|++- .....+-.+..+.-..|.+|.+++|+.++
T Consensus 34 lLKD~LEe~eE~~aql~Re~~eK~re~e~~K--------------r~~~~L~~~~~~lk~~L~qRD~LI~E~~~ 93 (103)
T 4h22_A 34 TLKDMLLELEEQLAESRRQYEEKNKEFEREK--------------HAHSILQFQFAEVKEALKQREEMLEPKLA 93 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTTTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888777777777777777652 12233444555555678899999988765
No 36
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.56 E-value=5.2e+02 Score=24.47 Aligned_cols=84 Identities=10% Similarity=0.112 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVL 225 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl 225 (293)
++...|..||..+..+...-...-.-+.++=.-..-.-+--.+=+...-.-++|+-+-+..|-....--|.+|.++|..+
T Consensus 35 ~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~ 114 (409)
T 1m1j_C 35 TTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMH 114 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 45566677777666665444443333333322222111111111222222223333333333333333455666666666
Q ss_pred HHHH
Q 022680 226 LAMQ 229 (293)
Q Consensus 226 ~AMQ 229 (293)
..++
T Consensus 115 ~~~~ 118 (409)
T 1m1j_C 115 IMNS 118 (409)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 5544
No 37
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=21.20 E-value=1.1e+02 Score=21.58 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHH
Q 022680 146 NLVGRIEKLEEDMKSSATILRVLSRQL 172 (293)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRql 172 (293)
.|+.|+-.||..+.+++.-|..+.-.|
T Consensus 11 ~L~rRVlqlE~~l~gI~S~idav~~Kl 37 (45)
T 4gif_A 11 MLTRRVLQLETVLEGVVSQIDAVGSKL 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999988887765444
No 38
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=20.77 E-value=2.9e+02 Score=21.85 Aligned_cols=31 Identities=35% Similarity=0.349 Sum_probs=23.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022680 201 SEATRALAMQGDVLEKELGEIQKVLLAMQEQ 231 (293)
Q Consensus 201 SeatraLA~redlLEkEL~eiQ~vl~AMQeq 231 (293)
.+....|..+.+.|++++.+++..+..++..
T Consensus 79 ~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~ 109 (146)
T 3hh0_A 79 EVFLRQMHFQREVLLAEQERIAKVLSHMDEM 109 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888998888888777654
No 39
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=20.68 E-value=2e+02 Score=22.98 Aligned_cols=29 Identities=7% Similarity=0.071 Sum_probs=21.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 202 EATRALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
+....|..+.+.||+++.+++..+..++.
T Consensus 90 ~~~~ll~~~~~~l~~qi~~L~~~~~~L~~ 118 (154)
T 2zhg_A 90 EWKQLSSQWREELDRRIHTLVALRDELDG 118 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788888888888887766653
No 40
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.20 E-value=2e+02 Score=24.60 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHH
Q 022680 147 LVGRIEKLEEDMKSSATILRVLSRQL 172 (293)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRql 172 (293)
+..|+..+|+.+...+.-+..+...+
T Consensus 102 ~~~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 102 AKERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555444444444444333
Done!