Query 022680
Match_columns 293
No_of_seqs 20 out of 22
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 09:23:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022680.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022680hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j0ha2 b.71.1.1 (A:506-588) N 36.3 7.3 0.00053 25.7 1.7 47 26-76 29-75 (83)
2 d1ykhb1 a.252.1.1 (B:2-130) RN 27.3 1.1E+02 0.008 22.7 7.4 57 118-175 61-117 (129)
3 d1ykhb1 a.252.1.1 (B:2-130) RN 24.9 1.3E+02 0.0093 22.4 7.7 23 153-175 53-75 (129)
4 d1rzua_ c.87.1.8 (A:) Glycogen 24.2 22 0.0016 29.1 3.0 23 160-182 18-40 (477)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 22.6 1.1E+02 0.0081 21.2 6.3 40 191-230 4-43 (107)
6 d1t72a_ a.7.12.1 (A:) Phosphat 20.9 1.3E+02 0.0092 22.2 6.6 28 140-167 2-29 (215)
7 d1r8da_ a.6.1.3 (A:) Multidrug 19.6 99 0.0072 21.0 5.4 41 189-229 61-102 (109)
8 d3b8ma1 d.58.60.1 (A:64-330) E 16.4 2.3E+02 0.017 22.4 7.7 63 186-248 125-189 (267)
9 g1avo.1 a.24.8.1 (A:,B:) Prote 14.4 86 0.0062 25.4 4.4 30 206-236 107-136 (200)
10 d2bcgg1 c.3.1.3 (G:5-301) Guan 13.8 41 0.003 22.4 1.9 23 160-182 234-256 (297)
No 1
>d1j0ha2 b.71.1.1 (A:506-588) Neopullulanase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=36.34 E-value=7.3 Score=25.70 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=34.5
Q ss_pred ccccccCCCCcCCCCCcccceeeeeecccccCCCccccCCCcccccccCCC
Q 022680 26 ATNLIKNPNNLALPPPITSRHLLIHISHNDYTPFKFIPNSKFYHSLKPNNC 76 (293)
Q Consensus 26 ~~~~~~~~~~l~~p~pi~~rh~~~~~~~~~~~~~~~~~~s~~~~~lk~~~s 76 (293)
..|+|..+..+++|.++..++...-.+|-.|... .++...+|+||..
T Consensus 29 v~N~S~~~~~v~lp~~~~~~~~~~l~~~~~~~~~----~~~~~ltL~Py~~ 75 (83)
T d1j0ha2 29 IINRSDQKADIPIPLDARGTWLVNLLTGERFAAE----AETLCTSLPPYGF 75 (83)
T ss_dssp EEECSSSCEEEECCCCCSSEEEEETTTCCEEECC----SSSCEEEECTTCE
T ss_pred EEeCCCCCEEEEccCccccCcEEEecCCcccccc----CCceEEEECCcEE
Confidence 4577778889999999988888766666666552 3445678888864
No 2
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.29 E-value=1.1e+02 Score=22.73 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Q 022680 118 VWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKL 175 (293)
Q Consensus 118 V~iGaiIRRRQW~Ri~~~~gr~~g~~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKL 175 (293)
++...++..+|+.-+-..=++ .+.++..-..||.+||+.++.+..-....-+..|+|
T Consensus 61 lA~dii~kakqId~LI~sLP~-~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~l 117 (129)
T d1ykhb1 61 LSTDIILKTRQINKLIDSLPG-VDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKL 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556678888877665443 355677788999999999998865544444445544
No 3
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.86 E-value=1.3e+02 Score=22.36 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=19.1
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhh
Q 022680 153 KLEEDMKSSATILRVLSRQLEKL 175 (293)
Q Consensus 153 kLEe~vrs~~t~irvLSRqlEKL 175 (293)
.+|...+.+++-|-+-+||.+.|
T Consensus 53 ~f~~~~~elA~dii~kakqId~L 75 (129)
T d1ykhb1 53 EFSNTIDELSTDIILKTRQINKL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 46777888888888889999887
No 4
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}
Probab=24.24 E-value=22 Score=29.12 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHhhcceeeee
Q 022680 160 SSATILRVLSRQLEKLGVRFRVT 182 (293)
Q Consensus 160 s~~t~irvLSRqlEKLGvRfRvt 182 (293)
|..++++.|||+|.++|..++|.
T Consensus 18 Gl~~vv~~La~~L~~~Gh~V~Vi 40 (477)
T d1rzua_ 18 GLADVVGALPIALEAHGVRTRTL 40 (477)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHcCCeEEEE
Confidence 55677888999999999999985
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.63 E-value=1.1e+02 Score=21.20 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 022680 191 TQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQE 230 (293)
Q Consensus 191 ~etaAlAqknSeatraLA~redlLEkEL~eiQ~vl~AMQe 230 (293)
.+..+-.++.-+-...+..+..-||.++.|.+.|+..|..
T Consensus 4 qe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~ 43 (107)
T d1fxka_ 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445555566677888888999999999999988874
No 6
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=20.94 E-value=1.3e+02 Score=22.16 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=21.0
Q ss_pred cCCccchhHHHHHHHHHHhHhHHHHHHH
Q 022680 140 EGRESVNLVGRIEKLEEDMKSSATILRV 167 (293)
Q Consensus 140 ~g~~~~~l~~RiekLEe~vrs~~t~irv 167 (293)
|||.+..+-..|+.+.+.+..+...+.-
T Consensus 2 ~~~~~~~~~~~L~~l~~~l~~M~~~v~~ 29 (215)
T d1t72a_ 2 GGGGGMKLFKELEETKEQVIKMAKLVQE 29 (215)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888899998888888766543
No 7
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=19.62 E-value=99 Score=21.04 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=22.1
Q ss_pred hHHHHHHHHh-hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 022680 189 PITQAAALAQ-KNSEATRALAMQGDVLEKELGEIQKVLLAMQ 229 (293)
Q Consensus 189 PI~etaAlAq-knSeatraLA~redlLEkEL~eiQ~vl~AMQ 229 (293)
||.+...+-. .+.+-..++..+.+.|++++.+++..+..++
T Consensus 61 sl~eI~~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 102 (109)
T d1r8da_ 61 RLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp CHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443332 2334455566667777777776665554443
No 8
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=16.44 E-value=2.3e+02 Score=22.43 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=51.0
Q ss_pred ccchHHHHHHHHhh--hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 022680 186 LKDPITQAAALAQK--NSEATRALAMQGDVLEKELGEIQKVLLAMQEQQQKQLELILAIGKTGKL 248 (293)
Q Consensus 186 LrdPI~etaAlAqk--nSeatraLA~redlLEkEL~eiQ~vl~AMQeqq~KQleLIL~ig~a~~~ 248 (293)
|..=|+-+..-+.+ +.++-..++.+..-|+.++.-.+.....-++++=++|+-=|.|.++.+|
T Consensus 125 L~~YI~~v~~~v~~~l~~~~~~~i~~~~~~l~~~~~~~~~~ak~~~~~~i~~l~~Al~IA~~agI 189 (267)
T d3b8ma1 125 LSGYIDYISALVVKESIENVRNKLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSLDIANAAGI 189 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44445554443333 6778889999999999999999999999899999999999999999996
No 9
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.41 E-value=86 Score=25.42 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=23.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022680 206 ALAMQGDVLEKELGEIQKVLLAMQEQQQKQL 236 (293)
Q Consensus 206 aLA~redlLEkEL~eiQ~vl~AMQeqq~KQl 236 (293)
+++.||+.| +||+.++....+++++-.|=+
T Consensus 107 GV~VQe~vl-~~l~~ve~~a~~~~~~i~kY~ 136 (200)
T g1avo.1 107 GVAVQEKVF-ELMTSLHTKLEGFHTQISKYF 136 (200)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 456778888 688888888888888877654
No 10
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.81 E-value=41 Score=22.39 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHhhcceeeee
Q 022680 160 SSATILRVLSRQLEKLGVRFRVT 182 (293)
Q Consensus 160 s~~t~irvLSRqlEKLGvRfRvt 182 (293)
+.-+++..|.+.++++|+.|+.-
T Consensus 234 G~~~l~~~l~~~~~~~G~~i~~~ 256 (297)
T d2bcgg1 234 GLGELPQGFARLSAIYGGTYMLD 256 (297)
T ss_dssp CTTHHHHHHHHHHHHTTCEEECS
T ss_pred cHHHHHHHHHHHHHhcCCEEEeC
Confidence 34567889999999999998753
Done!