Query 022681
Match_columns 293
No_of_seqs 133 out of 754
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1607 Protein transporter of 100.0 8E-60 1.7E-64 434.0 25.7 253 16-293 42-310 (318)
2 COG5058 LAG1 Protein transport 100.0 4.6E-58 1E-62 416.6 23.2 255 15-292 109-386 (395)
3 KOG1608 Protein transporter of 100.0 1.5E-31 3.2E-36 241.2 21.8 183 15-217 72-269 (374)
4 smart00724 TLC TRAM, LAG1 and 100.0 7.2E-32 1.6E-36 237.0 18.4 186 73-271 1-204 (205)
5 PF03798 TRAM_LAG1_CLN8: TLC d 99.9 3E-25 6.6E-30 192.3 15.0 176 74-265 1-198 (198)
6 PF08390 TRAM1: TRAM1-like pro 98.6 9.9E-08 2.1E-12 69.5 6.4 46 11-56 17-62 (65)
7 KOG4561 Uncharacterized conser 98.2 6.2E-06 1.4E-10 76.0 8.0 114 154-273 138-269 (281)
8 KOG4474 Uncharacterized conser 95.7 0.12 2.6E-06 47.1 10.5 124 73-210 44-186 (253)
9 PRK01637 hypothetical protein; 59.0 46 0.001 30.7 7.8 48 242-292 236-283 (286)
10 PRK13454 F0F1 ATP synthase sub 41.0 1.4E+02 0.0031 25.7 7.5 44 8-52 13-60 (181)
11 PF14293 YWFCY: YWFCY protein 39.1 25 0.00054 25.2 2.0 12 251-262 22-33 (61)
12 PF06679 DUF1180: Protein of u 38.6 61 0.0013 27.8 4.7 6 287-292 146-151 (163)
13 PF10587 EF-1_beta_acid: Eukar 28.8 17 0.00037 21.9 -0.2 8 283-290 4-11 (28)
14 PF08507 COPI_assoc: COPI asso 26.4 55 0.0012 26.8 2.4 14 280-293 123-136 (136)
15 PF14851 FAM176: FAM176 family 26.1 55 0.0012 27.8 2.4 18 244-268 30-47 (153)
16 PF05086 Dicty_REP: Dictyostel 25.7 44 0.00095 35.4 2.0 13 272-284 886-898 (911)
17 PF15330 SIT: SHP2-interacting 25.4 1.6E+02 0.0035 23.3 4.8 26 246-271 4-29 (107)
18 KOG1031 Predicted Ca2+-depende 24.8 31 0.00068 35.5 0.7 18 275-292 785-802 (1169)
19 PF02990 EMP70: Endomembrane p 21.0 1.4E+02 0.003 30.3 4.5 26 243-273 202-227 (521)
No 1
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-60 Score=433.99 Aligned_cols=253 Identities=45% Similarity=0.826 Sum_probs=227.9
Q ss_pred CCCCcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhhhhHHHHHHHHhhhhHHHHHHHHhhhheee
Q 022681 16 SYPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALSV 95 (293)
Q Consensus 16 ~~p~~~Dl~~~~~~a~~~~~vR~~~~~~v~~pl~~~l~~~k~~~~~~~~~~~r~~k~~Kf~Es~w~~~~y~~~~~~g~~v 95 (293)
.-.++.|..+..+++..++..|....-.+..|...+.+..++ .+.+||+||+|+++||++++++|+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~------------~~~~k~~Es~Wk~~yy~~s~~~glyV 109 (318)
T KOG1607|consen 42 YGKGASDICFLRFYLLFFTFTRLFLMLLVGRPFPLRLNVTAD------------RRKKKFCESAWKFLYYLVSWIFGLYV 109 (318)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCcCc------------hhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 445668999999999999999999888888888887653331 22389999999999999999999999
Q ss_pred eeeCCCCCChhhhhCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHhh-
Q 022681 96 TYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMGHHVATVILIVLSYIF- 174 (293)
Q Consensus 96 ~~~~~w~~d~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~af~~~~~~~~~f~e~~RkDf~~m~~HHivTi~Li~~SY~~- 174 (293)
++++||+.|+..+|.| ||+++++.++|+||++|.|||.|+++. ++.|++||||+||++||++|+.||++||+.
T Consensus 110 ~~~~~wf~~~k~~w~~-----yP~~~~~~~~k~~Y~~e~gfY~~~l~a-l~~d~~rkDf~~m~vHHvvTl~Li~lSy~~~ 183 (318)
T KOG1607|consen 110 MYHEPWFYDTKSFWEG-----YPDQTLPPSFKAYYLLEAGFYIQLLFA-LFLDEKRKDFWEMVVHHVVTLILISLSYVFN 183 (318)
T ss_pred eecchhhcCHHHHHhc-----CCCCCCCHHHHHHHHHhhHHHHHHHHH-HHhhccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999 999999999999999999999999987 579999999999999999999999999998
Q ss_pred --------------chhhhhhhhhhhhcCchhhhhHHHHHHHHHHHHHhhhHhhHHHHhhhhHH-HHhhccCCCCCCCCc
Q 022681 175 --------------SDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWILWSTSYE-VILTLDKKKHPMDGP 239 (293)
Q Consensus 175 --------------sDifL~~aK~~~Y~~~~~~~~~~F~~f~~sw~~~Rl~~~p~~vl~s~~~~-~~~~~~~~~~~~~~p 239 (293)
||++||++|++||.+.+.+|+.+|++|+.+|+++||+.+|+++++++..+ .... ...++
T Consensus 184 f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~~~~~~~F~~F~~~wi~~RL~~~p~wil~st~~~~~~~~------~~~~~ 257 (318)
T KOG1607|consen 184 FTRVGTLILALHDASDVFLELGKMLNYLQFEAIADFVFVLFAFSWIYTRLIYYPFWILRSTSREDFSLR------QYQPK 257 (318)
T ss_pred hhcccceeeeeecchHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh------ccCCC
Confidence 99999999999999999999999999999999999999999999999843 1111 12345
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCC
Q 022681 240 IYYYVFNTLLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVRSDSESDNEHED 293 (293)
Q Consensus 240 ~~~~~~~~lL~~L~~LhiyWf~lIlk~~~~~~~~~G~~~~D~Rsd~e~~~~~~~ 293 (293)
+.+++++++|.+||+||+||+++|+||++|++++ |+..||+|||+|+||++|+
T Consensus 258 ~~~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~~-g~~~eD~Rsd~~s~d~~~~ 310 (318)
T KOG1607|consen 258 PSYYFFNCLLLALQLLHIYWFYLILRMAYRVIKR-GMQGEDIRSDSESEDSSEE 310 (318)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccccccccccccccccc
Confidence 7789999999999999999999999999999984 7788999999999988774
No 2
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.6e-58 Score=416.58 Aligned_cols=255 Identities=29% Similarity=0.488 Sum_probs=227.0
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhhhhHHHHHHHHhhhhHHHHHHHHhhhhee
Q 022681 15 ESYPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALS 94 (293)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~~vR~~~~~~v~~pl~~~l~~~k~~~~~~~~~~~r~~k~~Kf~Es~w~~~~y~~~~~~g~~ 94 (293)
.+=.|..|++++++++++++.+|.+++..|++|++..++.+. ++|++||+||+|.++||++++.+|+|
T Consensus 109 ~YgKG~~d~~F~lfy~ifftf~ref~md~virpf~l~~~v~s------------~kkikRf~eq~y~~fyy~v~g~~Gly 176 (395)
T COG5058 109 QYGKGILDLCFVLFYMIFFTFLREFLMDVVIRPFGLELNVRS------------EKKIKRFCEQMYAIFYYGVSGPFGLY 176 (395)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC------------HHHHHHHHHHHHHHHHhhccccceEE
Confidence 456789999999999999999999999999999999977654 58899999999999999999999999
Q ss_pred eeeeCC-CCCChhhhhCCCCCCCCCCCccchhHHHHHHHHHHHHHHH--HHHHHhhhhhccchhhHHHHHHHHHHHHHHH
Q 022681 95 VTYDEP-WFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYS--IFALMFWETRRADFGVSMGHHVATVILIVLS 171 (293)
Q Consensus 95 v~~~~~-w~~d~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~af~~~~--~~~~~f~e~~RkDf~~m~~HHivTi~Li~~S 171 (293)
+++++| |+.|++.+|.+ ||+..+|..+|.||+.|+|||.|+ ++. ++.|++||||+||+.||++|++||..|
T Consensus 177 vmrss~~w~fntk~l~et-----yp~~~~p~lfk~fYliqaafw~qQa~ilv-LqlEkprkD~~elv~HHIVTllLI~lS 250 (395)
T COG5058 177 VMRSSPLWFFNTKALYET-----YPVFYNPFLFKAFYLIQAAFWAQQACILV-LQLEKPRKDFKELVFHHIVTLLLIWLS 250 (395)
T ss_pred EEecCcchhhhhHHHHHh-----CccccCcHHHHHHHHHHHHHHHHHHhhhe-eeecchhhhHHHHHHHHHHHHHHHHHH
Confidence 999999 77799999988 999999999999999999999998 543 568999999999999999999999999
Q ss_pred Hhh---------------chhhhhhhhhhhhcCchhhhhHHHHHHHHHHHHHhhhHhhHHHHhhhhHHHHhhccC-----
Q 022681 172 YIF---------------SDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWILWSTSYEVILTLDK----- 231 (293)
Q Consensus 172 Y~~---------------sDifL~~aK~~~Y~~~~~~~~~~F~~f~~sw~~~Rl~~~p~~vl~s~~~~~~~~~~~----- 231 (293)
|.+ ||++|+++|++||++. .+|+..|++|+.+|+++|+++.- +|+|+++.. ++..+.
T Consensus 251 Y~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~-~l~~~iF~iFv~~wIysRHyln~-kIlw~vlt~-~r~~g~~~L~v 327 (395)
T COG5058 251 YVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS-VLATFIFGIFVFIWIYSRHYLNL-KILWSVLTA-FRTIGNFVLDV 327 (395)
T ss_pred HHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhc-hhhcCceeeEe
Confidence 998 9999999999999999 78999999999999999997775 799999873 333222
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCCCC
Q 022681 232 KKHPMDGPIYYYVFNTLLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVRSDSESDNEHE 292 (293)
Q Consensus 232 ~~~~~~~p~~~~~~~~lL~~L~~LhiyWf~lIlk~~~~~~~~~G~~~~D~Rsd~e~~~~~~ 292 (293)
..+...+.+...++..||.+||.+|+||+.||+||++|++.+ | ..+|+|||||+|||+|
T Consensus 328 a~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayRv~~~-~-e~~D~RSd~e~ee~s~ 386 (395)
T COG5058 328 ATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYRVIWE-G-ELKDERSDDESEEESD 386 (395)
T ss_pred echhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-cccccccccccCChhh
Confidence 222334446677888999999999999999999999999975 4 5799999999988765
No 3
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-31 Score=241.18 Aligned_cols=183 Identities=18% Similarity=0.365 Sum_probs=174.3
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhhhhHHHHHHHHhhhhHHHHHHHHhhhhee
Q 022681 15 ESYPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGKGHHMLDFKTSERKKKIRKFNESAWKCVYFLTAELLALS 94 (293)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~~vR~~~~~~v~~pl~~~l~~~k~~~~~~~~~~~r~~k~~Kf~Es~w~~~~y~~~~~~g~~ 94 (293)
.++.|++|++.+++|+++++++|+++|+|+++++.+|++++| .|..||+||++..+||..|++||.+
T Consensus 72 ~Y~yGikDl~tifFY~l~~IIiHAviQEyvLDKIsKr~hlSK-------------~k~~kFnESgql~~Fy~~S~vwg~~ 138 (374)
T KOG1608|consen 72 LYYYGIKDLATIFFYMLVAIIIHAVIQEYVLDKISKRLHLSK-------------VKHSKFNESGQLVAFYLFSCVWGFY 138 (374)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------------hhhhhhccCCeeeehhhHHhhhhhe
Confidence 378899999999999999999999999999999999999887 7899999999999999999999999
Q ss_pred eeeeCCCCCChhhhhCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHhh
Q 022681 95 VTYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRRADFGVSMGHHVATVILIVLSYIF 174 (293)
Q Consensus 95 v~~~~~w~~d~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~af~~~~~~~~~f~e~~RkDf~~m~~HHivTi~Li~~SY~~ 174 (293)
++..|.++.|++..|.| |||++|+..+|+||+.|+|||+|++++++|+.+||+|....+.|-+..+.+|+++|..
T Consensus 139 ili~E~yl~~p~~lW~~-----yPh~~msfq~Kffyi~QlaYwlHafPElYfQK~Kkeeiprqlvyi~l~l~hI~gAYll 213 (374)
T KOG1608|consen 139 ILISEGYLSDPTSLWEG-----YPHRVMSFQMKFFYISQLAYWLHAFPELYFQKTKKEEIPRQLVYIILHLFHIAGAYLL 213 (374)
T ss_pred eeeecccccChHHHHhc-----CCCchhhHHHHHHHHHHHHHHHHHChHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999999988
Q ss_pred ---------------chhhhhhhhhhhhcCchhhhhHHHHHHHHHHHHHhhhHhhHHH
Q 022681 175 ---------------SDVFLEIGKMSKYIGAEGIASLSFILFVLSWILLRLIYYPFWI 217 (293)
Q Consensus 175 ---------------sDifL~~aK~~~Y~~~~~~~~~~F~~f~~sw~~~Rl~~~p~~v 217 (293)
++...++++++.+.+.+ .+.+|.+++.+|+..|+.....-|
T Consensus 214 nl~rlgLvLl~LhYftellfHi~rlfyf~dek--~~k~fslwa~vF~l~Rl~tliiaV 269 (374)
T KOG1608|consen 214 NLNRLGLVLLTLHYFTELLFHIARLFYFSDEK--YQKLFSLWAAVFVLGRLGTLIIAV 269 (374)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHheecccc--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999888 588999999999999998765534
No 4
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=100.00 E-value=7.2e-32 Score=237.02 Aligned_cols=186 Identities=35% Similarity=0.668 Sum_probs=162.6
Q ss_pred HHHHhhhhHHHHHHHHhhhheeeeeeCCCCCChhhhhCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHH-hhhhhc
Q 022681 73 RKFNESAWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALM-FWETRR 151 (293)
Q Consensus 73 ~Kf~Es~w~~~~y~~~~~~g~~v~~~~~w~~d~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~af~~~~~~~~~-f~e~~R 151 (293)
+|++|+.||+++|+.+++.|++++++++|++|+. .+ +|.++.++..+++|.+|+||++++++.+. +.+.+|
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~---~~-----~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~ 72 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPK---SL-----YPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKR 72 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCc---cc-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 3889999999999999999999999999988887 34 89999999999999999999999988765 679999
Q ss_pred cchhhHHHHHHHHHHHHHHHHhh---------------chhhhhhhhhhhhcCch--hhhhHHHHHHHHHHHHHhhhHhh
Q 022681 152 ADFGVSMGHHVATVILIVLSYIF---------------SDVFLEIGKMSKYIGAE--GIASLSFILFVLSWILLRLIYYP 214 (293)
Q Consensus 152 kDf~~m~~HHivTi~Li~~SY~~---------------sDifL~~aK~~~Y~~~~--~~~~~~F~~f~~sw~~~Rl~~~p 214 (293)
||+++|++||++|++++..||.. ||+|++++|+++++|.+ .+.+..+++|+++|+++|++.+|
T Consensus 73 ~d~~~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p 152 (205)
T smart00724 73 KDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFP 152 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999977 99999999999999984 67899999999999999999999
Q ss_pred HHHHhhhhHHHHhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022681 215 FWILWSTSYEVILTLDKKKHPMDGPIYYYVFNTLLFCLLVLHIYWWVLIYRMLVKQV 271 (293)
Q Consensus 215 ~~vl~s~~~~~~~~~~~~~~~~~~p~~~~~~~~lL~~L~~LhiyWf~lIlk~~~~~~ 271 (293)
+.++...........+ ...++.+.++.+++++|++||+|||++|+|++.|.+
T Consensus 153 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~ 204 (205)
T smart00724 153 FLILTVTVHYAQAESG-----LFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLL 204 (205)
T ss_pred HHHHHHHhhhhhhhcC-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8776655443321111 123455678889999999999999999999999864
No 5
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.93 E-value=3e-25 Score=192.30 Aligned_cols=176 Identities=28% Similarity=0.593 Sum_probs=145.0
Q ss_pred HHHhhhhHHHHHHHHhhhheeeeeeCCCCCChhhhhCCCCCCCCCCCc---cchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022681 74 KFNESAWKCVYFLTAELLALSVTYDEPWFKNTRCFWVGPGNQVWPDQK---IKLKLKGVYMYAAGFYTYSIFALMFWETR 150 (293)
Q Consensus 74 Kf~Es~w~~~~y~~~~~~g~~v~~~~~w~~d~~~~w~~~~~~~~P~~~---~~~~~~~yYl~q~af~~~~~~~~~f~e~~ 150 (293)
||+|+++.++++++++++|++++.++| ++|.+ ||+.+ .+...+.++..++||++++++..+..+++
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~ 69 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDP------ELWSD-----WPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRK 69 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCc------HHhhh-----cccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 689999999999999999999999988 55555 44443 35588999999999999998877777888
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhh---------------chhhhhhhhhhhhc-Cc-hhhhhHHH--HHHHHHHHHHhhh
Q 022681 151 RADFGVSMGHHVATVILIVLSYIF---------------SDVFLEIGKMSKYI-GA-EGIASLSF--ILFVLSWILLRLI 211 (293)
Q Consensus 151 RkDf~~m~~HHivTi~Li~~SY~~---------------sDifL~~aK~~~Y~-~~-~~~~~~~F--~~f~~sw~~~Rl~ 211 (293)
|+|+++|++||++|+.++..||.. ||+||++.|++++. +. +......+ ++|+++|+.+|++
T Consensus 70 ~~d~~~~~~HH~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~ 149 (198)
T PF03798_consen 70 RGDFWEMLLHHVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIV 149 (198)
T ss_pred hhhhhHhhHHHHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999966 99999999999999 55 46567777 9999999999999
Q ss_pred HhhHHHHhhhhHHHHhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 022681 212 YYPFWILWSTSYEVILTLDKKKHPMDGPIYYYVFNTLLFCLLVLHIYWWVLIYR 265 (293)
Q Consensus 212 ~~p~~vl~s~~~~~~~~~~~~~~~~~~p~~~~~~~~lL~~L~~LhiyWf~lIlk 265 (293)
.+|+.+.+........ +.. ...+.....+.+++.+|++||+||+++|+|
T Consensus 150 ~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r 198 (198)
T PF03798_consen 150 LFPYLIYWVYWDVWPL--PLW---KVPWPVPWIFLVLLLVLFVLNIYWFYLILR 198 (198)
T ss_pred HHHHHHHHHHHHhccc--ccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998776665432211 111 112345677888999999999999999987
No 6
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=98.63 E-value=9.9e-08 Score=69.49 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=41.5
Q ss_pred ccCCCCCCCcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 022681 11 NWEQESYPAYEDFAVLPLFALYFPSVRFFLEKFVFEKVAKRWIFGK 56 (293)
Q Consensus 11 ~~~~~~~p~~~Dl~~~~~~a~~~~~vR~~~~~~v~~pl~~~l~~~k 56 (293)
+=.+.+-.|++|++++++++++++++|+++|++|++|+||+++++|
T Consensus 17 ~~~~~Y~~G~~D~~fV~fy~i~~t~lRa~~m~yvl~Plar~~gi~k 62 (65)
T PF08390_consen 17 PGTGLYGKGWDDLYFVFFYIIVFTFLRAFLMEYVLDPLARKLGISK 62 (65)
T ss_pred CCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3345678899999999999999999999999999999999998766
No 7
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=98.17 E-value=6.2e-06 Score=75.97 Aligned_cols=114 Identities=21% Similarity=0.308 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHH-HHHHHHhh--------------chhhhhhhhhhhhcCchh--hhhHHHHHHHHHHHHHhhhHhhHH
Q 022681 154 FGVSMGHHVATVI-LIVLSYIF--------------SDVFLEIGKMSKYIGAEG--IASLSFILFVLSWILLRLIYYPFW 216 (293)
Q Consensus 154 f~~m~~HHivTi~-Li~~SY~~--------------sDifL~~aK~~~Y~~~~~--~~~~~F~~f~~sw~~~Rl~~~p~~ 216 (293)
-.+|++||++..+ ....++.. |-+|+.....+.-+|.+. +-.+.-.+..++|+..|+..+|.
T Consensus 138 ~~~fviHh~~s~~~v~~~~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~- 216 (281)
T KOG4561|consen 138 GIEFVIHHIASLVFVGCLLRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPY- 216 (281)
T ss_pred CeeEEeeHHHHhhhheeeEecCccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHH-
Confidence 3499999999922 11111111 889999888887777653 34567788899999999998886
Q ss_pred HHhhhh-HHHHhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022681 217 ILWSTS-YEVILTLDKKKHPMDGPIYYYVFNTLLFCLLVLHIYWWVLIYRMLVKQVQA 273 (293)
Q Consensus 217 vl~s~~-~~~~~~~~~~~~~~~~p~~~~~~~~lL~~L~~LhiyWf~lIlk~~~~~~~~ 273 (293)
+-+... .......+. .+...| ...++.=.+|.+||+|||..|+|.+.|.+.+
T Consensus 217 ~~~~~~~~~~~~~~~~--~~~~~~---~~~l~~~~~L~v~Nl~Wf~km~~ga~K~~~~ 269 (281)
T KOG4561|consen 217 MGWHYYWRYQGLVLNQ--VPPFLP---LFLLGLNALLLVLNLYWFSKMVRGALKVLKK 269 (281)
T ss_pred HHHHHHHHHhhhhhhh--hchhHh---HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 544443 222222211 122222 3455666678899999999999999998875
No 8
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.12 Score=47.09 Aligned_cols=124 Identities=19% Similarity=0.353 Sum_probs=78.4
Q ss_pred HHHHhhhhHHHHHHHHhhhheeeeeeCC-CCCChhhhhCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022681 73 RKFNESAWKCVYFLTAELLALSVTYDEP-WFKNTRCFWVGPGNQVWPDQKIKLKLKGVYMYAAGFYTYSIFALMFWETRR 151 (293)
Q Consensus 73 ~Kf~Es~w~~~~y~~~~~~g~~v~~~~~-w~~d~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~af~~~~~~~~~f~e~~R 151 (293)
.||....=.++.-+++..++.+.+.+.| -.-|+-.++-. .-..--+..+||-++...-++ .+++-
T Consensus 44 ~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~~~~~~~~~s~-------------~~~~l~~fS~gYfiyD~vDm~-~~~~s 109 (253)
T KOG4474|consen 44 KRFSNLTVSLLHSTISGLWALLSLLYDPEMVDDPITYHSL-------------SAYQLLLFSAGYFIYDLVDML-MNEQS 109 (253)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHhh-------------hhHHHHHHHHHHHHHHHHHHH-hcchh
Confidence 4666665566666777777777776665 22334333211 112234567899999988654 55556
Q ss_pred cchhhHHHHHHHHHHHHHH--------HHhh-------chhhhhhhhhhhhcCchhh---hhHHHHHHHHHHHHHhh
Q 022681 152 ADFGVSMGHHVATVILIVL--------SYIF-------SDVFLEIGKMSKYIGAEGI---ASLSFILFVLSWILLRL 210 (293)
Q Consensus 152 kDf~~m~~HHivTi~Li~~--------SY~~-------sDifL~~aK~~~Y~~~~~~---~~~~F~~f~~sw~~~Rl 210 (293)
.+.+|.+.||++++.-... +|.. +++||++-++++-+|.++- -.+.=.+=.++++.+|+
T Consensus 110 ~~s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~ 186 (253)
T KOG4474|consen 110 ELSWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRL 186 (253)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHh
Confidence 6899999999998764221 2222 9999999999998886542 12222333566777786
No 9
>PRK01637 hypothetical protein; Reviewed
Probab=59.04 E-value=46 Score=30.72 Aligned_cols=48 Identities=8% Similarity=0.311 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCCCC
Q 022681 242 YYVFNTLLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVRSDSESDNEHE 292 (293)
Q Consensus 242 ~~~~~~lL~~L~~LhiyWf~lIlk~~~~~~~~~G~~~~D~Rsd~e~~~~~~ 292 (293)
|--+.+++..|.-+++.|..+++-..++.... + .+..++.-|.|||||
T Consensus 236 YGslg~vi~lllWlyl~~~ilL~Gaelna~~~--~-~~~~~~~~~~~~~~~ 283 (286)
T PRK01637 236 YGALAVIPILFVWVYLSWCIVLLGAEITATLG--E-YRKLKQAAEQEEDDE 283 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHhcccccccccc
Confidence 44456677777888999999999887775543 1 234445545555444
No 10
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=41.03 E-value=1.4e+02 Score=25.68 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=28.7
Q ss_pred cccccCCCCCCCcChhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022681 8 KSVNWEQESYPAYEDFA----VLPLFALYFPSVRFFLEKFVFEKVAKRW 52 (293)
Q Consensus 8 ~~~~~~~~~~p~~~Dl~----~~~~~a~~~~~vR~~~~~~v~~pl~~~l 52 (293)
-+..+...+.|++ |.. .++...+.+.++=.++.+++++|+.+-+
T Consensus 13 ~~~~~~~~gmp~l-d~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l 60 (181)
T PRK13454 13 AGHAASAPGMPQL-DFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVL 60 (181)
T ss_pred cccccCCCCCCCC-cHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667776 332 3334455566677778889999999875
No 11
>PF14293 YWFCY: YWFCY protein
Probab=39.15 E-value=25 Score=25.18 Aligned_cols=12 Identities=42% Similarity=1.201 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q 022681 251 CLLVLHIYWWVL 262 (293)
Q Consensus 251 ~L~~LhiyWf~l 262 (293)
++.++|+||+.-
T Consensus 22 ~~l~ih~Y~~CY 33 (61)
T PF14293_consen 22 LFLVIHFYWFCY 33 (61)
T ss_pred HHHHHHHHHHHH
Confidence 456799999863
No 12
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=38.63 E-value=61 Score=27.84 Aligned_cols=6 Identities=50% Similarity=0.817 Sum_probs=2.3
Q ss_pred CCCCCC
Q 022681 287 SDNEHE 292 (293)
Q Consensus 287 ~~~~~~ 292 (293)
+|||||
T Consensus 146 ~ddede 151 (163)
T PF06679_consen 146 EDDEDE 151 (163)
T ss_pred CCcccc
Confidence 333333
No 13
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=28.79 E-value=17 Score=21.91 Aligned_cols=8 Identities=50% Similarity=0.821 Sum_probs=4.0
Q ss_pred CCCCCCCC
Q 022681 283 SDSESDNE 290 (293)
Q Consensus 283 sd~e~~~~ 290 (293)
||||++|+
T Consensus 4 SddEeed~ 11 (28)
T PF10587_consen 4 SDDEEEDE 11 (28)
T ss_pred CccccccH
Confidence 55554443
No 14
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=26.37 E-value=55 Score=26.78 Aligned_cols=14 Identities=14% Similarity=0.548 Sum_probs=8.3
Q ss_pred ccCCCCCCCCCCCC
Q 022681 280 DVRSDSESDNEHED 293 (293)
Q Consensus 280 D~Rsd~e~~~~~~~ 293 (293)
+.++++++||||+|
T Consensus 123 ~~~~~~~~~~~~~~ 136 (136)
T PF08507_consen 123 ALSSQQDNEDDSDD 136 (136)
T ss_pred cccccccccccCCC
Confidence 45556666666665
No 15
>PF14851 FAM176: FAM176 family
Probab=26.10 E-value=55 Score=27.83 Aligned_cols=18 Identities=33% Similarity=0.491 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022681 244 VFNTLLFCLLVLHIYWWVLIYRMLV 268 (293)
Q Consensus 244 ~~~~lL~~L~~LhiyWf~lIlk~~~ 268 (293)
++.|||++|.+ ++.|+..
T Consensus 30 VC~GLlLtLcl-------lV~risc 47 (153)
T PF14851_consen 30 VCAGLLLTLCL-------LVIRISC 47 (153)
T ss_pred HHHHHHHHHHH-------HHhhhee
Confidence 34555555533 4666666
No 16
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=25.65 E-value=44 Score=35.43 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=7.3
Q ss_pred HhcCCcccccCCC
Q 022681 272 QARGRVSEDVRSD 284 (293)
Q Consensus 272 ~~~G~~~~D~Rsd 284 (293)
.+.|+..+|.|||
T Consensus 886 ~~~~~~d~dE~e~ 898 (911)
T PF05086_consen 886 QSNGDEDTDEDED 898 (911)
T ss_pred HhcCCcccccccc
Confidence 3435555666666
No 17
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=25.36 E-value=1.6e+02 Score=23.34 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022681 246 NTLLFCLLVLHIYWWVLIYRMLVKQV 271 (293)
Q Consensus 246 ~~lL~~L~~LhiyWf~lIlk~~~~~~ 271 (293)
.+++.+|.+|-+....+-.+|..|.-
T Consensus 4 l~il~llLll~l~asl~~wr~~~rq~ 29 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMKQRQK 29 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34455555556666666677766643
No 18
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=24.78 E-value=31 Score=35.48 Aligned_cols=18 Identities=44% Similarity=0.680 Sum_probs=15.0
Q ss_pred CCcccccCCCCCCCCCCC
Q 022681 275 GRVSEDVRSDSESDNEHE 292 (293)
Q Consensus 275 G~~~~D~Rsd~e~~~~~~ 292 (293)
|+...|-|||+|++||||
T Consensus 785 ~q~s~~~qsdsddsdeee 802 (1169)
T KOG1031|consen 785 GQASGDKQSDSDDSDEEE 802 (1169)
T ss_pred ccccccccccccccchhh
Confidence 567789999999998876
No 19
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=20.95 E-value=1.4e+02 Score=30.26 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022681 243 YVFNTLLFCLLVLHIYWWVLIYRMLVKQVQA 273 (293)
Q Consensus 243 ~~~~~lL~~L~~LhiyWf~lIlk~~~~~~~~ 273 (293)
-++|++++++.+. .++..+..|.+++
T Consensus 202 SiiNS~iivl~L~-----~~v~~Il~R~l~~ 227 (521)
T PF02990_consen 202 SIINSFIIVLFLS-----GLVAIILLRTLRR 227 (521)
T ss_pred eHHHHHHHHHHHH-----HHHHHHHHHHhhc
Confidence 4667776655432 3445555676653
Done!