Query 022681
Match_columns 293
No_of_seqs 133 out of 754
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 09:24:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ej5_A WAsp, wiskott-aldrich s 20.4 69 0.0023 24.4 2.9 19 269-290 87-105 (107)
2 2knc_A Integrin alpha-IIB; tra 18.2 2.1E+02 0.007 19.0 4.5 15 241-255 12-26 (54)
3 1b9u_A Protein (ATP synthase); 17.1 1.7E+02 0.0057 16.9 4.2 27 26-52 7-33 (34)
4 2qkl_B SPAC19A8.12 protein, SP 15.1 1.2E+02 0.004 22.6 3.0 49 117-166 23-76 (95)
5 2pjx_C Syntaxin-4; membrane tr 11.9 74 0.0025 17.9 0.8 10 279-288 11-20 (29)
6 3cx5_I Cytochrome B-C1 complex 11.6 32 0.0011 23.9 -1.0 17 267-284 38-54 (65)
7 2kjn_A LAH4; amphipathic pepti 6.7 2.1E+02 0.0072 15.6 1.2 17 151-167 1-17 (26)
8 2iu1_A EIF5, eukaryotic transl 6.7 1.4E+02 0.0046 25.4 0.7 18 276-293 152-169 (208)
9 2ca6_A RAN GTPase-activating p 5.0 1.6E+02 0.0056 26.0 0.3 15 279-293 342-356 (386)
10 3us3_A Calsequestrin-1; calciu 4.8 3.3E+02 0.011 24.3 2.2 29 263-293 339-367 (367)
No 1
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=20.41 E-value=69 Score=24.41 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=12.7
Q ss_pred HHHHhcCCcccccCCCCCCCCC
Q 022681 269 KQVQARGRVSEDVRSDSESDNE 290 (293)
Q Consensus 269 ~~~~~~G~~~~D~Rsd~e~~~~ 290 (293)
+++.++| +=|+|+||||++
T Consensus 87 ~~~~~r~---~~i~s~~e~~~~ 105 (107)
T 1ej5_A 87 HVMQKRS---RAIHSSDEGEDQ 105 (107)
T ss_dssp HHGGGGS---SCCCCCCSSCCS
T ss_pred HHHHHHh---hcccCCCccccc
Confidence 3455544 468999888875
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=18.17 E-value=2.1e+02 Score=19.02 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHH
Q 022681 241 YYYVFNTLLFCLLVL 255 (293)
Q Consensus 241 ~~~~~~~lL~~L~~L 255 (293)
.|.+..+.+..|.+|
T Consensus 12 ~wiIi~svl~GLllL 26 (54)
T 2knc_A 12 IWWVLVGVLGGLLLL 26 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344455555554443
No 3
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=17.12 E-value=1.7e+02 Score=16.90 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022681 26 LPLFALYFPSVRFFLEKFVFEKVAKRW 52 (293)
Q Consensus 26 ~~~~a~~~~~vR~~~~~~v~~pl~~~l 52 (293)
.+.-++.+.++=.++.+++++|+.+-+
T Consensus 7 l~~~~i~Flil~~~l~kf~~~Pi~~~l 33 (34)
T 1b9u_A 7 ILGQAIAFVLFVLFCMKYVWPPLMAAI 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455667777788899999988753
No 4
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=15.09 E-value=1.2e+02 Score=22.58 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=32.6
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHhh-----hhhccchhhHHHHHHHHHH
Q 022681 117 WPDQKIKLKLKGVYMYAAGFYTYSIFALMFW-----ETRRADFGVSMGHHVATVI 166 (293)
Q Consensus 117 ~P~~~~~~~~~~yYl~q~af~~~~~~~~~f~-----e~~RkDf~~m~~HHivTi~ 166 (293)
=|....+.-.+.++.+|.|+|...=+.. -. .-.-|||.+++.+|+-.+-
T Consensus 23 ~P~eel~s~eRl~FqiEeA~WfY~Df~~-~~np~Lp~~~lk~F~~~if~~cp~L~ 76 (95)
T 2qkl_B 23 LPAEEQSSVERLCFQIEQAHWFYEDFIR-AQNDQLPSLGLRVFSAKLFAHCPLLW 76 (95)
T ss_dssp CCGGGSSCHHHHHHHHHHHHHHHHHTTT-TTCTTSCCCCHHHHHHHHHHHCTHHH
T ss_pred CCHHHhhhHHHHHHHHHhheeehccccc-ccCCCCCCCcHHHHHHHHHHhCHHHH
Confidence 5777778888999999999997542100 00 1123578888888865544
No 5
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=11.94 E-value=74 Score=17.89 Aligned_cols=10 Identities=40% Similarity=0.451 Sum_probs=5.7
Q ss_pred cccCCCCCCC
Q 022681 279 EDVRSDSESD 288 (293)
Q Consensus 279 ~D~Rsd~e~~ 288 (293)
.|.-||||+|
T Consensus 11 gdnisddede 20 (29)
T 2pjx_C 11 GDNISDDEDE 20 (29)
T ss_pred CCCCCCccce
Confidence 3555666654
No 6
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=11.64 E-value=32 Score=23.95 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=11.2
Q ss_pred HHHHHHhcCCcccccCCC
Q 022681 267 LVKQVQARGRVSEDVRSD 284 (293)
Q Consensus 267 ~~~~~~~~G~~~~D~Rsd 284 (293)
++.... +|+.-+|++..
T Consensus 38 iw~~~N-kGKlwkDIk~k 54 (65)
T 3cx5_I 38 WYENHN-KGKLWKDVKAR 54 (65)
T ss_dssp HHHHHT-TTTSHHHHHHH
T ss_pred HHHhcc-CCCCcccChhh
Confidence 334444 48888999874
No 7
>2kjn_A LAH4; amphipathic peptide, de novo protein; NMR {Artificial gene} PDB: 2kjo_A
Probab=6.70 E-value=2.1e+02 Score=15.63 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHH
Q 022681 151 RADFGVSMGHHVATVIL 167 (293)
Q Consensus 151 RkDf~~m~~HHivTi~L 167 (293)
+|-...+-+||++.+.|
T Consensus 1 kkallalalhhlahlal 17 (26)
T 2kjn_A 1 KKALLALALHHLAHLAL 17 (26)
T ss_dssp CCCCSCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH
No 8
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=6.65 E-value=1.4e+02 Score=25.36 Aligned_cols=18 Identities=28% Similarity=0.507 Sum_probs=0.0
Q ss_pred CcccccCCCCCCCCCCCC
Q 022681 276 RVSEDVRSDSESDNEHED 293 (293)
Q Consensus 276 ~~~~D~Rsd~e~~~~~~~ 293 (293)
+.+++.-|++||||++||
T Consensus 152 ~EAEEEs~eeeeeeed~~ 169 (208)
T 2iu1_A 152 KEAEEESSGGEEEDEDEN 169 (208)
T ss_dssp HCSSCCCCCCCCCCCSCH
T ss_pred Hccccccccccccccccc
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=5.04 E-value=1.6e+02 Score=25.97 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCC
Q 022681 279 EDVRSDSESDNEHED 293 (293)
Q Consensus 279 ~D~Rsd~e~~~~~~~ 293 (293)
+|...|+|+|+|+|+
T Consensus 342 ~~~e~e~e~eeeee~ 356 (386)
T 2ca6_A 342 DMEELTDEEEEDEEE 356 (386)
T ss_dssp SCC------------
T ss_pred ccccccccccccccc
No 10
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=4.84 E-value=3.3e+02 Score=24.26 Aligned_cols=29 Identities=17% Similarity=0.459 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCcccccCCCCCCCCCCCC
Q 022681 263 IYRMLVKQVQARGRVSEDVRSDSESDNEHED 293 (293)
Q Consensus 263 Ilk~~~~~~~~~G~~~~D~Rsd~e~~~~~~~ 293 (293)
|.+-+-+++. |+..-..-.+|+++|+++|
T Consensus 339 i~~F~~~~~~--Gkl~p~~~~~~~~~~~~~~ 367 (367)
T 3us3_A 339 LEDWLEDVLE--GEINTEDDDDEDDDDDDDD 367 (367)
T ss_dssp HHHHHHHHHH--TSSCC--------------
T ss_pred HHHHHHHHHc--CCcCccccccccccccCCC
Done!