Query 022681
Match_columns 293
No_of_seqs 133 out of 754
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 09:24:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022681.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022681hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qklb1 a.242.1.1 (B:2-91) mRN 7.1 1.4E+02 0.011 20.1 2.8 48 117-164 22-73 (90)
2 d1ml8a_ d.227.1.2 (A:) Hypothe 4.9 2.7E+02 0.02 18.9 3.5 29 14-42 30-58 (134)
3 d2e74d2 f.23.12.1 (D:12-45) IS 4.3 3.2E+02 0.023 14.6 3.3 20 252-271 5-24 (34)
4 d1uspa_ d.227.1.1 (A:) Organic 4.2 4.2E+02 0.03 17.7 4.1 28 15-42 39-66 (137)
5 d1ukka_ d.227.1.1 (A:) Hypothe 4.1 3E+02 0.022 18.9 3.2 28 15-42 40-67 (141)
6 d1vpta_ c.66.1.25 (A:) Polymer 3.6 93 0.0068 25.9 -0.4 14 277-290 135-148 (297)
7 d1qwia_ d.227.1.1 (A:) Osmotic 3.6 3.2E+02 0.023 18.8 2.9 29 14-42 41-69 (142)
8 d1n2fa_ d.227.1.1 (A:) Organic 3.5 4.6E+02 0.033 17.7 3.8 28 15-42 44-71 (142)
9 d2pn2a1 d.227.1.1 (A:1-132) Un 3.2 4.6E+02 0.033 17.5 3.4 28 15-42 37-64 (132)
10 d1vlaa_ d.227.1.2 (A:) Hypothe 3.2 4.5E+02 0.033 17.8 3.4 29 14-42 38-66 (144)
No 1
>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-terminal domain {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=7.08 E-value=1.4e+02 Score=20.09 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=31.0
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHhh----hhhccchhhHHHHHHHH
Q 022681 117 WPDQKIKLKLKGVYMYAAGFYTYSIFALMFW----ETRRADFGVSMGHHVAT 164 (293)
Q Consensus 117 ~P~~~~~~~~~~yYl~q~af~~~~~~~~~f~----e~~RkDf~~m~~HHivT 164 (293)
=|....+.-.+.++.+|.|+|.+.=+..... .-.-|||.+++.+|+-.
T Consensus 22 ~P~eel~~~~rl~FqiE~A~WfY~Df~~~~~p~Lp~~~~~~Fa~~if~~cp~ 73 (90)
T d2qklb1 22 LPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPL 73 (90)
T ss_dssp CCGGGSSCHHHHHHHHHHHHHHHHHTTTTTCTTSCCCCHHHHHHHHHHHCTH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHCHH
Confidence 5777778889999999999998652210000 11125677777777543
No 2
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=4.87 E-value=2.7e+02 Score=18.91 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=23.8
Q ss_pred CCCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 022681 14 QESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (293)
Q Consensus 14 ~~~~p~~~Dl~~~~~~a~~~~~vR~~~~~ 42 (293)
+...|.|.|++....-+|..+.++.+.++
T Consensus 30 ~~~gp~P~elllaal~~C~~~~~~~~a~~ 58 (134)
T d1ml8a_ 30 GDKAPSPMEMVLMAAGGCSAIDVVSILQK 58 (134)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999998888876654
No 3
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.33 E-value=3.2e+02 Score=14.65 Aligned_cols=20 Identities=0% Similarity=0.026 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022681 252 LLVLHIYWWVLIYRMLVKQV 271 (293)
Q Consensus 252 L~~LhiyWf~lIlk~~~~~~ 271 (293)
=|+||+-||.-+-..+...+
T Consensus 5 rqfmnlltfgt~tg~alg~l 24 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGAL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhhh
Confidence 37788888888877666544
No 4
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.19 E-value=4.2e+02 Score=17.75 Aligned_cols=28 Identities=7% Similarity=-0.040 Sum_probs=22.6
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 022681 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (293)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~~vR~~~~~ 42 (293)
..-|+|.|++....-+|..+.+|.++++
T Consensus 39 ~~g~~P~elllaAlasC~~~t~~~~a~~ 66 (137)
T d1uspa_ 39 GPGTNPEQLFAAGYAACFQGALGVVSRR 66 (137)
T ss_dssp CSCBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999988888876654
No 5
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=4.11 E-value=3e+02 Score=18.89 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=23.2
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 022681 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (293)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~~vR~~~~~ 42 (293)
..-|+|.|++....-+|....+|.+.++
T Consensus 40 ~~gp~P~elllaala~C~~~~~~~~a~~ 67 (141)
T d1ukka_ 40 GEGTNPEELIAAAHAGCFSMALAASLER 67 (141)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468899999999999988888877665
No 6
>d1vpta_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia virus [TaxId: 10245]}
Probab=3.58 E-value=93 Score=25.86 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=6.1
Q ss_pred cccccCCCCCCCCC
Q 022681 277 VSEDVRSDSESDNE 290 (293)
Q Consensus 277 ~~~D~Rsd~e~~~~ 290 (293)
...||||++.++++
T Consensus 135 fISDIRS~~~~~e~ 148 (297)
T d1vpta_ 135 LISDVASAAGGNEP 148 (297)
T ss_dssp EEECCCC------C
T ss_pred EEEeccccCCCCCc
Confidence 45899999854433
No 7
>d1qwia_ d.227.1.1 (A:) Osmotically inducible protein OsmC {Escherichia coli [TaxId: 562]}
Probab=3.56 E-value=3.2e+02 Score=18.85 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=24.1
Q ss_pred CCCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 022681 14 QESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (293)
Q Consensus 14 ~~~~p~~~Dl~~~~~~a~~~~~vR~~~~~ 42 (293)
+..-|.|.|++....-+|....+|.+.++
T Consensus 41 ~~~G~~P~elllaAlasC~~~~~~~~a~~ 69 (142)
T d1qwia_ 41 GEKGTNPEELIGAAHAACFSMALSLMLGE 69 (142)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34458899999999999999889988765
No 8
>d1n2fa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Pseudomonas aeruginosa, pa01 [TaxId: 287]}
Probab=3.49 E-value=4.6e+02 Score=17.72 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=22.9
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 022681 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (293)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~~vR~~~~~ 42 (293)
..-|+|.|++....-+|..+.++.+.++
T Consensus 44 ~~g~~P~elllaalasC~~~t~~~~a~~ 71 (142)
T d1n2fa_ 44 GAATNPEQLFAAGYSACFIGAMKFVAGQ 71 (142)
T ss_dssp CSSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999988888877654
No 9
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=3.18 E-value=4.6e+02 Score=17.46 Aligned_cols=28 Identities=7% Similarity=-0.034 Sum_probs=22.7
Q ss_pred CCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 022681 15 ESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (293)
Q Consensus 15 ~~~p~~~Dl~~~~~~a~~~~~vR~~~~~ 42 (293)
..-|.|.|++....-+|....++.+.++
T Consensus 37 ~~g~~P~eLllaala~C~~~~~~~~a~~ 64 (132)
T d2pn2a1 37 GEAFSPTDLLATSLASCMLTIIGIKARD 64 (132)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999988888876654
No 10
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=3.15 E-value=4.5e+02 Score=17.76 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCCCCCcChhhhHHHHHHHHHHHHHHHHH
Q 022681 14 QESYPAYEDFAVLPLFALYFPSVRFFLEK 42 (293)
Q Consensus 14 ~~~~p~~~Dl~~~~~~a~~~~~vR~~~~~ 42 (293)
+..-|.|.|++....-+|..+.++.++.+
T Consensus 38 ~~~g~~P~elllaala~C~~~~~~~~a~~ 66 (144)
T d1vlaa_ 38 KDAAPRPLELVLTGLMGCTGMDVVSILRK 66 (144)
T ss_dssp CSCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHhh
Done!