BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022682
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V1I|A Chain A, Adenovirus Fibre Shaft Sequence N-Terminally Fused To The
Bacteriophage T4 Fibritin Foldon Trimerisation Motif
With A Long Linker
pdb|1V1I|B Chain B, Adenovirus Fibre Shaft Sequence N-Terminally Fused To The
Bacteriophage T4 Fibritin Foldon Trimerisation Motif
With A Long Linker
pdb|1V1I|C Chain C, Adenovirus Fibre Shaft Sequence N-Terminally Fused To The
Bacteriophage T4 Fibritin Foldon Trimerisation Motif
With A Long Linker
Length = 109
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 153 VKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLY-----AMFVGSKNIKEKSS 207
++F + S+ + PI + ID G + G GL A+ +G+KN + S
Sbjct: 24 LEFDTNTSESPDINPIKTKIGSGIDYNENGAMITKLGAGLSFDNSGAITIGNKNDDKGSG 83
Query: 208 QIPASNLFGLFYLKTPPKWV 227
IP + G Y++ +WV
Sbjct: 84 YIPEAPRDGQAYVRKDGEWV 103
>pdb|3V9I|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
Length = 566
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 69 ITAKTEVGRG-------IDVSSLLANVTR----AALKFLRPRPSVNPTSSNSHIQRFIER 117
I AKT VG+G ID ++ L + R A++ +P P S+NS + R +E
Sbjct: 146 ILAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKYAVELEGQQPISVPPSTNSTVYRGLEG 205
Query: 118 VIIDCRFFTFFAVAGSLLGS 137
+ F F A+ G+L G+
Sbjct: 206 FVAAISPFNFTAIGGNLAGA 225
>pdb|3V9H|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
Length = 566
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 69 ITAKTEVGRG-------IDVSSLLANVTR----AALKFLRPRPSVNPTSSNSHIQRFIER 117
I AKT VG+G ID ++ L + R A++ +P P S+NS + R +E
Sbjct: 146 ILAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKYAVELEGQQPISVPPSTNSTVYRGLEG 205
Query: 118 VIIDCRFFTFFAVAGSLLGS 137
+ F F A+ G+L G+
Sbjct: 206 FVAAISPFNFTAIGGNLAGA 225
>pdb|3V9G|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
Length = 566
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 69 ITAKTEVGRG-------IDVSSLLANVTR----AALKFLRPRPSVNPTSSNSHIQRFIER 117
I AKT VG+G ID ++ L + R A++ +P P S+NS + R +E
Sbjct: 146 ILAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKYAVELEGQQPISVPPSTNSTVYRGLEG 205
Query: 118 VIIDCRFFTFFAVAGSLLGS 137
+ F F A+ G+L G+
Sbjct: 206 FVAAISPFNFTAIGGNLAGA 225
>pdb|3V9J|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Sulfate Ion
pdb|3V9J|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Sulfate Ion
pdb|3V9K|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With The Product Glutamate
pdb|3V9K|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With The Product Glutamate
pdb|3V9L|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Nad+
pdb|3V9L|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Nad+
pdb|4E3X|A Chain A, Crystal Structure Of Mus Musculus
1-Pyrroline-5-Carboxylate Dehydrogenase Cryoprotected In
Proline
pdb|4E3X|B Chain B, Crystal Structure Of Mus Musculus
1-Pyrroline-5-Carboxylate Dehydrogenase Cryoprotected In
Proline
Length = 563
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 69 ITAKTEVGRG-------IDVSSLLANVTRAALKFL----RPRPSVNPTSSNSHIQRFIER 117
+ AKT VG+G ID ++ L + R KF +P P S+N + R +E
Sbjct: 143 VLAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEGEQPISVPPSTNHTVYRGLEG 202
Query: 118 VIIDCRFFTFFAVAGSLLGS 137
+ F F A+ G+L G+
Sbjct: 203 FVAAISPFNFTAIGGNLAGA 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,641,545
Number of Sequences: 62578
Number of extensions: 223218
Number of successful extensions: 502
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 6
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)