Query 022682
Match_columns 293
No_of_seqs 111 out of 370
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8f_C Cytochrome C oxidase po 17.8 38 0.0013 22.2 0.8 23 177-199 11-33 (34)
2 1vry_A Glycine receptor alpha- 14.2 98 0.0033 23.4 2.3 31 170-200 29-62 (76)
3 2knc_B Integrin beta-3; transm 12.3 3.8E+02 0.013 20.0 5.2 24 129-152 12-35 (79)
4 2jp3_A FXYD domain-containing 12.3 1.8E+02 0.0063 21.7 3.3 19 131-149 19-37 (67)
5 2k9j_B Integrin beta-3; transm 11.8 3.6E+02 0.012 18.0 5.0 27 128-154 10-36 (43)
6 2jo1_A Phospholemman; FXYD1, N 11.6 2.1E+02 0.0072 21.6 3.5 19 131-149 18-36 (72)
7 2zxe_G FXYD10, phospholemman-l 9.8 2E+02 0.0067 21.9 2.8 18 131-148 21-38 (74)
8 2wwb_A Protein transport prote 7.6 1.4E+03 0.047 22.2 8.5 48 88-135 386-438 (476)
9 2l34_A TYRO protein tyrosine k 7.2 2.4E+02 0.0081 18.1 1.9 15 272-286 19-33 (33)
10 2l9u_A Receptor tyrosine-prote 6.5 5.3E+02 0.018 17.1 3.4 17 128-144 16-32 (40)
No 1
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=17.80 E-value=38 Score=22.24 Aligned_cols=23 Identities=26% Similarity=0.662 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhcceeeceec
Q 022682 177 DMFLVGTALLIFGVGLYAMFVGS 199 (293)
Q Consensus 177 DlfLIa~vLlIf~~GlYELFIS~ 199 (293)
-++++|..++++=+|.|-+|+++
T Consensus 11 ~V~ilg~~I~i~W~~vf~lFl~R 33 (34)
T 3s8f_C 11 VILVLTLTILVFWLGVYAVFFAR 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHeeeecC
Confidence 35778888888888999888875
No 2
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=14.21 E-value=98 Score=23.36 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcce---eeceecC
Q 022682 170 HLVIEAIDMFLVGTALLIFGVGLY---AMFVGSK 200 (293)
Q Consensus 170 l~vIeaIDlfLIa~vLlIf~~GlY---ELFIS~i 200 (293)
..-+.++|.++.+-.+++|+-=+- .+|+++.
T Consensus 29 VSYikAiDvw~~~C~~FVF~aLlEya~V~y~~r~ 62 (76)
T 1vry_A 29 VSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSRK 62 (76)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357899999999999999874332 2455544
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=12.26 E-value=3.8e+02 Score=20.00 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022682 129 AVAGSLLGSILCFVEGCFLLLQSY 152 (293)
Q Consensus 129 aVi~sLl~SllLF~~G~~~v~~~~ 152 (293)
+++++.++++++....++.+|+.+
T Consensus 12 ~Iv~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544444444444
No 4
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=12.26 E-value=1.8e+02 Score=21.67 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022682 131 AGSLLGSILCFVEGCFLLL 149 (293)
Q Consensus 131 i~sLl~SllLF~~G~~~v~ 149 (293)
+++|+-+.++|+.|...++
T Consensus 19 igGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHHHH
Confidence 5788888888988865443
No 5
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=11.78 E-value=3.6e+02 Score=17.99 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022682 128 FAVAGSLLGSILCFVEGCFLLLQSYVK 154 (293)
Q Consensus 128 laVi~sLl~SllLF~~G~~~v~~~~~~ 154 (293)
.+++++.++++++....+.-+|+.+..
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliwk~~~~ 36 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIWKLLIT 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677777766666555656655543
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=11.58 E-value=2.1e+02 Score=21.62 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022682 131 AGSLLGSILCFVEGCFLLL 149 (293)
Q Consensus 131 i~sLl~SllLF~~G~~~v~ 149 (293)
+++|+-+.++|+.|...++
T Consensus 18 iGGLifA~vLfi~GI~iil 36 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 5788888889998865443
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=9.78 E-value=2e+02 Score=21.88 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022682 131 AGSLLGSILCFVEGCFLL 148 (293)
Q Consensus 131 i~sLl~SllLF~~G~~~v 148 (293)
+|+|+-+.++|+.|...+
T Consensus 21 igGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccchhHHHHHHHHHHHH
Confidence 578888888999885533
No 8
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=7.55 E-value=1.4e+03 Score=22.22 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=23.3
Q ss_pred hhhhHHhhccCC----CCCCCCCcchHHHHHHHHH-HHhhhhhHHHHHHHHHH
Q 022682 88 VTRAALKFLRPR----PSVNPTSSNSHIQRFIERV-IIDCRFFTFFAVAGSLL 135 (293)
Q Consensus 88 ~~~a~~~~~~~~----~~~~~~~~~~~iE~~~E~~-L~~sR~lvllaVi~sLl 135 (293)
+.+.+.|.+++- |+.+|+.-.+.+++.+.|+ ++.+=++.+++++..++
T Consensus 386 np~dvA~~Lkk~G~~IpGiRp~~T~~yL~~vi~rit~~Ga~~l~~lavlp~~l 438 (476)
T 2wwb_A 386 SAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFL 438 (476)
T ss_dssp CHHHHHHHHHHHCTTTCCCCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666542 3444433333455555554 44555555555555544
No 9
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=7.23 E-value=2.4e+02 Score=18.06 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhc
Q 022682 272 AALLSSACIFLLSRL 286 (293)
Q Consensus 272 aIllva~aly~l~k~ 286 (293)
+++++++..|+.+|+
T Consensus 19 ~t~~i~~~vy~~~r~ 33 (33)
T 2l34_A 19 LTVLIALAVYFLGRL 33 (33)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhheecC
Confidence 445667777877763
No 10
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=6.53 E-value=5.3e+02 Score=17.12 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022682 128 FAVAGSLLGSILCFVEG 144 (293)
Q Consensus 128 laVi~sLl~SllLF~~G 144 (293)
++|++.++|+..+++.|
T Consensus 16 l~vif~~lg~tflywrg 32 (40)
T 2l9u_A 16 LVVIFMMLGGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCceeEEEcc
Confidence 34455555555444444
Done!