Query 022682
Match_columns 293
No_of_seqs 111 out of 370
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 09:26:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022682.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022682hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1veka_ a.5.2.1 (A:) Ubiquitin 8.8 91 0.0066 21.8 2.4 19 30-50 1-19 (84)
2 d2e9xb1 a.278.1.2 (B:62-173) D 7.9 41 0.003 24.9 0.1 16 223-238 1-16 (112)
3 d1k28d2 b.106.1.1 (D:201-376) 6.8 1.1E+02 0.0078 24.5 2.2 32 24-55 108-139 (176)
4 d1oedc_ f.36.1.1 (C:) Acetylch 6.0 2.5E+02 0.018 21.6 4.1 23 123-145 231-253 (260)
5 d1xmec1 f.23.9.1 (C:2-34) Bact 5.7 3E+02 0.022 16.1 4.3 22 127-148 7-28 (33)
6 d1g3nc1 a.74.1.1 (C:16-147) Vi 5.5 4.2E+02 0.031 18.7 5.1 27 244-270 56-82 (132)
7 d1bu2a1 a.74.1.1 (A:22-148) Vi 5.3 4.1E+02 0.03 18.8 4.8 28 245-272 52-79 (127)
8 d2odka1 d.306.1.1 (A:1-51) Hyp 5.2 97 0.0071 19.7 0.9 18 227-244 1-18 (51)
9 d2cchb1 a.74.1.1 (B:181-308) C 5.0 3.5E+02 0.026 18.9 4.2 28 244-271 51-78 (128)
10 d1jkwa1 a.74.1.1 (A:11-161) Cy 5.0 3.7E+02 0.027 19.3 4.4 39 242-286 67-105 (151)
No 1
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.81 E-value=91 Score=21.84 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=13.7
Q ss_pred cccCCCCCCcccccCCCCCcc
Q 022682 30 SNSGFNTGENRSVYSDIGQRK 50 (293)
Q Consensus 30 ~~~~~~~g~~~~~~~~~~~~~ 50 (293)
|++|...|+. ++|+...+.
T Consensus 1 gs~G~~~gE~--~lpe~~~~~ 19 (84)
T d1veka_ 1 GSSGSSGGEE--LLPDGVPEE 19 (84)
T ss_dssp CCCCCCCCCC--SCCSSCSSS
T ss_pred CCCCCCCCcc--cCCCCCCcc
Confidence 4568888898 787766543
No 2
>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.94 E-value=41 Score=24.87 Aligned_cols=16 Identities=19% Similarity=0.858 Sum_probs=12.5
Q ss_pred CCcceeeCChhHHHHH
Q 022682 223 PPKWVEMGSVSQAQSR 238 (293)
Q Consensus 223 ~P~WL~I~SlddLK~K 238 (293)
.|.||.+.++.+++..
T Consensus 1 PP~Wl~ve~L~~~~~~ 16 (112)
T d2e9xb1 1 PPEWMDVEKLEKMRDH 16 (112)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHH
Confidence 3889998888777664
No 3
>d1k28d2 b.106.1.1 (D:201-376) Baseplate structural protein gp27 {Bacteriophage T4 [TaxId: 10665]}
Probab=6.79 E-value=1.1e+02 Score=24.51 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=25.0
Q ss_pred ceeeeecccCCCCCCcccccCCCCCccccccc
Q 022682 24 KTVRYLSNSGFNTGENRSVYSDIGQRKSAAPI 55 (293)
Q Consensus 24 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 55 (293)
-+-+|.|+-+|++|+++..+..+.|-|.---|
T Consensus 108 a~~~t~GnF~LtPg~ki~F~D~KnQf~~ef~V 139 (176)
T d1k28d2 108 AKCSTIGNFNLTPGVKIIFNDSKNQFKTEFYV 139 (176)
T ss_dssp EEEEESCCTTCCTTCEECEECSSCCCCSCEEE
T ss_pred eEEEEeccccccCCcEEEEechhhhhccchhH
Confidence 35567799999999999888888877665444
No 4
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.96 E-value=2.5e+02 Score=21.57 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 022682 123 RFFTFFAVAGSLLGSILCFVEGC 145 (293)
Q Consensus 123 R~lvllaVi~sLl~SllLF~~G~ 145 (293)
|++.++-++..+++++.+|+.+.
T Consensus 231 Rlfl~lF~i~~vi~ti~ifl~~~ 253 (260)
T d1oedc_ 231 RLSMFIITPVMVLGTIFIFVMGN 253 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 44445555666777778887763
No 5
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=5.72 E-value=3e+02 Score=16.12 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022682 127 FFAVAGSLLGSILCFVEGCFLL 148 (293)
Q Consensus 127 llaVi~sLl~SllLF~~G~~~v 148 (293)
.++|+.-|.-.++.|+.|.+.+
T Consensus 7 al~vi~il~l~ilvfw~gv~av 28 (33)
T d1xmec1 7 ALAVILVLTLTILVFWLGVYAV 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777767778888885543
No 6
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=5.55 E-value=4.2e+02 Score=18.70 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhccCcccChhhHHHHH
Q 022682 244 MMVLQVEVLEKFNSIPVVTSLDLVCFA 270 (293)
Q Consensus 244 VmIL~V~fLe~fl~v~~~t~lDLL~~a 270 (293)
..-++|+++.+|+.......-++=.+|
T Consensus 56 t~~lAv~llDrfls~~~v~~~~lqLia 82 (132)
T d1g3nc1 56 VVALALNLLDRLLLIKQVSKEHFQKTG 82 (132)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCcccCcHHHHHHHH
Confidence 466799999999976544444443333
No 7
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=5.34 E-value=4.1e+02 Score=18.78 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhccCcccChhhHHHHHHH
Q 022682 245 MVLQVEVLEKFNSIPVVTSLDLVCFAGA 272 (293)
Q Consensus 245 mIL~V~fLe~fl~v~~~t~lDLL~~a~a 272 (293)
.-++|.++.+|+...--...++=.+|++
T Consensus 52 l~lAv~llDryl~~~~i~~~~lqLi~~t 79 (127)
T d1bu2a1 52 FPLSVSILDRYLCKKQGTKKTLQKIGAA 79 (127)
T ss_dssp HHHHHHHHHHHTTTSCCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHcccccccHHHHHHHHHH
Confidence 4678999999988654444455444443
No 8
>d2odka1 d.306.1.1 (A:1-51) Hypothetical protein NE2111 {Nitrosomonas europaea [TaxId: 915]}
Probab=5.21 E-value=97 Score=19.71 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=14.2
Q ss_pred eeeCChhHHHHHHHHHHH
Q 022682 227 VEMGSVSQAQSRIGHAVM 244 (293)
Q Consensus 227 L~I~SlddLK~KL~~VIV 244 (293)
|..-++.|+|.++..++=
T Consensus 1 M~~~s~seAk~~ls~ll~ 18 (51)
T d2odka1 1 MHVWPVQDAKARFSEFLD 18 (51)
T ss_dssp CCEEEHHHHHHTHHHHHH
T ss_pred CceEeHHHHHHHHHHHHH
Confidence 456688999999998763
No 9
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.00 E-value=3.5e+02 Score=18.88 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhccCcccChhhHHHHHH
Q 022682 244 MMVLQVEVLEKFNSIPVVTSLDLVCFAG 271 (293)
Q Consensus 244 VmIL~V~fLe~fl~v~~~t~lDLL~~a~ 271 (293)
..-++|.++.+|+...-....++-.+|+
T Consensus 51 t~~lAv~llDr~l~~~~i~~~~~qLi~~ 78 (128)
T d2cchb1 51 TLHLAVNYIDRFLSSMSVLRGKLQLVGT 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchHHHHHHHH
Confidence 4567899999998754334444444433
No 10
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.98 E-value=3.7e+02 Score=19.26 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhccCcccChhhHHHHHHHHHHHHHHHHHHhhc
Q 022682 242 AVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRL 286 (293)
Q Consensus 242 VIVmIL~V~fLe~fl~v~~~t~lDLL~~a~aIllva~aly~l~k~ 286 (293)
-.+...++.+|++|....-....|.-..+ .+|+|+-+|.
T Consensus 67 ~~~~~tA~~~~~RF~~~~s~~~~~~~li~------~acl~LA~K~ 105 (151)
T d1jkwa1 67 RSVVGTACMYFKRFYLNNSVMEYHPRIIM------LTCAFLACKV 105 (151)
T ss_dssp HHHHHHHHHHHHHHGGGSCTTTSCHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccccHHHHH------HHHHHHHHHH
Confidence 35667888899998875444455543333 3455555565
Done!