Query 022683
Match_columns 293
No_of_seqs 246 out of 1169
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:22:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1100 Predicted E3 ubiquitin 100.0 2.7E-32 5.9E-37 245.7 11.2 189 102-290 15-207 (207)
2 KOG4265 Predicted E3 ubiquitin 99.2 1.7E-12 3.7E-17 124.4 1.4 51 240-290 289-343 (349)
3 PF13920 zf-C3HC4_3: Zinc fing 99.1 2.2E-11 4.7E-16 86.0 1.9 44 241-284 2-49 (50)
4 KOG4275 Predicted E3 ubiquitin 99.0 4.1E-11 9E-16 112.4 -1.4 51 241-291 300-350 (350)
5 KOG4172 Predicted E3 ubiquitin 99.0 1.7E-11 3.6E-16 88.9 -3.6 50 242-291 8-62 (62)
6 KOG1571 Predicted E3 ubiquitin 98.8 5.2E-10 1.1E-14 107.5 0.2 53 239-291 303-355 (355)
7 KOG1101 Apoptosis inhibitor IA 98.5 1E-08 2.3E-13 88.4 -1.1 50 153-202 32-90 (147)
8 KOG1785 Tyrosine kinase negati 98.3 1.9E-07 4E-12 91.3 0.9 51 242-293 370-426 (563)
9 PF00653 BIR: Inhibitor of Apo 98.1 7.2E-07 1.6E-11 67.1 0.2 43 153-195 17-68 (70)
10 smart00238 BIR Baculoviral inh 98.0 1.1E-06 2.3E-11 65.8 -0.3 49 147-195 11-68 (71)
11 cd00022 BIR Baculoviral inhibi 97.9 2.1E-06 4.6E-11 63.9 -0.4 48 148-195 10-66 (69)
12 KOG0978 E3 ubiquitin ligase in 97.8 0.00014 3.1E-09 76.0 10.4 147 140-289 535-697 (698)
13 PLN03208 E3 ubiquitin-protein 97.6 3.1E-05 6.6E-10 69.7 2.6 50 239-289 16-87 (193)
14 PF14634 zf-RING_5: zinc-RING 97.5 5.4E-05 1.2E-09 52.1 2.1 36 244-280 2-44 (44)
15 PF13923 zf-C3HC4_2: Zinc fing 97.5 3.9E-05 8.5E-10 51.3 1.0 34 244-278 1-39 (39)
16 PHA02929 N1R/p28-like protein; 97.4 0.00011 2.3E-09 68.2 2.8 48 240-288 173-232 (238)
17 smart00184 RING Ring finger. E 97.3 0.00017 3.7E-09 45.8 2.6 34 244-278 1-39 (39)
18 PF13639 zf-RING_2: Ring finge 97.1 0.00018 3.9E-09 49.1 0.7 36 243-279 2-44 (44)
19 cd00162 RING RING-finger (Real 97.1 0.00054 1.2E-08 45.0 2.9 39 243-282 1-45 (45)
20 KOG0320 Predicted E3 ubiquitin 97.0 0.00026 5.7E-09 62.9 1.0 49 241-290 131-187 (187)
21 KOG0823 Predicted E3 ubiquitin 96.9 0.00058 1.3E-08 62.8 2.4 46 239-285 45-97 (230)
22 PF14447 Prok-RING_4: Prokaryo 96.9 0.00047 1E-08 50.3 1.3 43 241-284 7-51 (55)
23 PHA02926 zinc finger-like prot 96.8 0.00047 1E-08 63.4 1.5 46 238-284 167-231 (242)
24 PF00097 zf-C3HC4: Zinc finger 96.8 0.00053 1.2E-08 45.8 1.0 34 244-278 1-41 (41)
25 KOG0317 Predicted E3 ubiquitin 96.8 0.00053 1.2E-08 64.9 1.3 48 241-289 239-290 (293)
26 TIGR00599 rad18 DNA repair pro 96.5 0.0009 2E-08 66.3 1.1 48 236-284 21-72 (397)
27 KOG2164 Predicted E3 ubiquitin 96.2 0.0023 5E-08 64.7 2.0 43 241-284 186-237 (513)
28 KOG2177 Predicted E3 ubiquitin 96.0 0.0021 4.6E-08 56.6 0.7 42 238-280 10-55 (386)
29 COG5236 Uncharacterized conser 96.0 0.0037 8E-08 60.9 2.1 47 239-286 59-111 (493)
30 KOG4692 Predicted E3 ubiquitin 95.9 0.0023 5E-08 62.4 0.5 45 239-284 420-468 (489)
31 smart00504 Ubox Modified RING 95.9 0.0061 1.3E-07 43.9 2.5 42 242-284 2-47 (63)
32 PF15227 zf-C3HC4_4: zinc fing 95.7 0.0056 1.2E-07 41.9 1.5 34 244-278 1-42 (42)
33 COG5574 PEX10 RING-finger-cont 95.5 0.0056 1.2E-07 57.5 1.1 41 241-282 215-261 (271)
34 PF13445 zf-RING_UBOX: RING-ty 95.1 0.0082 1.8E-07 41.6 0.8 27 244-272 1-31 (43)
35 COG5432 RAD18 RING-finger-cont 94.9 0.011 2.5E-07 56.4 1.2 46 237-283 21-70 (391)
36 KOG0287 Postreplication repair 94.8 0.0087 1.9E-07 58.2 0.3 49 236-285 18-70 (442)
37 COG5540 RING-finger-containing 94.7 0.023 5.1E-07 54.6 2.8 46 237-283 319-372 (374)
38 KOG0802 E3 ubiquitin ligase [P 93.7 0.028 6.1E-07 57.7 1.2 44 238-282 288-340 (543)
39 COG5243 HRD1 HRD ubiquitin lig 93.4 0.031 6.7E-07 55.1 1.0 44 238-282 284-344 (491)
40 PF12678 zf-rbx1: RING-H2 zinc 92.2 0.074 1.6E-06 40.4 1.4 27 252-279 43-73 (73)
41 PF14835 zf-RING_6: zf-RING of 91.8 0.12 2.5E-06 39.1 2.0 45 237-282 3-50 (65)
42 KOG4628 Predicted E3 ubiquitin 91.3 0.11 2.4E-06 50.8 1.9 43 242-285 230-280 (348)
43 KOG2113 Predicted RNA binding 91.2 0.18 4E-06 48.8 3.2 49 241-289 343-393 (394)
44 KOG2879 Predicted E3 ubiquitin 90.6 0.16 3.5E-06 48.2 2.2 44 239-283 237-287 (298)
45 KOG1814 Predicted E3 ubiquitin 89.7 0.14 3.1E-06 51.0 1.1 45 238-283 181-240 (445)
46 KOG1039 Predicted E3 ubiquitin 89.5 0.15 3.3E-06 49.9 1.1 48 239-287 159-225 (344)
47 KOG3039 Uncharacterized conser 88.4 0.42 9.1E-06 45.0 3.1 47 238-285 218-272 (303)
48 PF04641 Rtf2: Rtf2 RING-finge 87.3 0.49 1.1E-05 44.2 2.9 46 239-285 111-163 (260)
49 KOG3002 Zn finger protein [Gen 86.1 0.42 9.2E-06 45.9 1.8 45 239-284 46-92 (299)
50 PF04710 Pellino: Pellino; In 84.6 0.29 6.4E-06 48.6 0.0 41 250-290 356-411 (416)
51 KOG2932 E3 ubiquitin ligase in 84.3 0.41 8.9E-06 46.4 0.8 41 242-284 91-135 (389)
52 PF07800 DUF1644: Protein of u 82.1 1.1 2.4E-05 39.5 2.6 20 241-260 2-21 (162)
53 PF04564 U-box: U-box domain; 81.9 1 2.2E-05 34.0 2.0 44 240-284 3-51 (73)
54 PF12126 DUF3583: Protein of u 81.5 16 0.00035 35.3 10.2 93 101-197 23-144 (324)
55 KOG4159 Predicted E3 ubiquitin 81.0 0.74 1.6E-05 46.0 1.2 45 239-284 82-130 (398)
56 KOG1813 Predicted E3 ubiquitin 80.1 0.73 1.6E-05 44.3 0.8 45 243-288 243-291 (313)
57 COG5152 Uncharacterized conser 79.5 0.55 1.2E-05 43.0 -0.2 46 242-288 197-246 (259)
58 KOG1001 Helicase-like transcri 78.5 0.87 1.9E-05 48.3 0.9 40 242-283 455-500 (674)
59 PF10272 Tmpp129: Putative tra 76.6 1.6 3.5E-05 43.0 2.1 43 240-282 270-350 (358)
60 KOG0828 Predicted E3 ubiquitin 76.6 0.91 2E-05 46.5 0.4 46 238-284 568-635 (636)
61 KOG2113 Predicted RNA binding 76.4 0.97 2.1E-05 43.9 0.5 49 240-288 135-188 (394)
62 KOG0804 Cytoplasmic Zn-finger 74.5 1.7 3.7E-05 44.0 1.6 45 238-283 172-222 (493)
63 smart00744 RINGv The RING-vari 72.3 2 4.4E-05 30.3 1.2 36 243-279 1-49 (49)
64 KOG0825 PHD Zn-finger protein 71.0 1.1 2.3E-05 48.3 -0.7 46 241-287 123-175 (1134)
65 COG5220 TFB3 Cdk activating ki 67.5 1.7 3.7E-05 40.9 -0.1 40 240-280 9-61 (314)
66 PF03854 zf-P11: P-11 zinc fin 65.9 2.9 6.3E-05 29.9 0.9 43 242-286 3-49 (50)
67 PF05290 Baculo_IE-1: Baculovi 65.7 2.7 6E-05 36.1 0.8 45 241-286 80-135 (140)
68 KOG0311 Predicted E3 ubiquitin 64.1 0.89 1.9E-05 44.7 -2.7 51 235-286 37-93 (381)
69 PF14570 zf-RING_4: RING/Ubox 63.5 2.8 6.1E-05 29.9 0.4 38 244-282 1-47 (48)
70 KOG3842 Adaptor protein Pellin 62.6 4.1 8.9E-05 39.8 1.5 51 240-290 340-424 (429)
71 KOG2391 Vacuolar sorting prote 61.5 1.8E+02 0.0038 29.0 12.7 50 108-158 221-278 (365)
72 KOG0297 TNF receptor-associate 57.9 4.7 0.0001 40.0 1.1 50 238-288 18-72 (391)
73 PF04216 FdhE: Protein involve 57.0 5.4 0.00012 37.7 1.2 48 241-289 172-228 (290)
74 cd00729 rubredoxin_SM Rubredox 56.9 3.5 7.6E-05 27.0 -0.0 15 273-287 19-33 (34)
75 PLN02189 cellulose synthase 54.0 8.1 0.00017 43.0 2.1 43 241-283 34-87 (1040)
76 COG5175 MOT2 Transcriptional r 53.5 5.2 0.00011 39.5 0.5 42 243-285 16-66 (480)
77 PF10367 Vps39_2: Vacuolar sor 53.2 7.9 0.00017 30.2 1.4 29 240-269 77-107 (109)
78 PF12240 Angiomotin_C: Angiomo 52.8 1.7E+02 0.0036 27.0 9.9 62 115-178 71-150 (205)
79 KOG0804 Cytoplasmic Zn-finger 49.3 3.2E+02 0.0069 28.2 13.0 96 100-195 323-427 (493)
80 cd00350 rubredoxin_like Rubred 48.7 5.1 0.00011 25.8 -0.2 16 272-287 17-32 (33)
81 KOG1103 Predicted coiled-coil 46.0 3.3E+02 0.0071 27.5 11.5 41 98-138 135-185 (561)
82 KOG1002 Nucleotide excision re 41.7 6.7 0.00015 40.8 -0.8 42 240-282 535-585 (791)
83 COG1592 Rubrerythrin [Energy p 34.9 11 0.00024 33.4 -0.4 31 241-287 134-164 (166)
84 PLN02638 cellulose synthase A 34.4 22 0.00048 39.9 1.7 43 241-283 17-70 (1079)
85 COG4357 Zinc finger domain con 33.9 23 0.00049 29.0 1.2 44 242-285 36-93 (105)
86 PRK14714 DNA polymerase II lar 33.8 27 0.00059 39.9 2.2 47 241-288 667-725 (1337)
87 PLN02400 cellulose synthase 33.7 24 0.00053 39.6 1.9 43 241-283 36-89 (1085)
88 PF10083 DUF2321: Uncharacteri 33.5 15 0.00032 32.4 0.2 25 264-288 30-55 (158)
89 cd00730 rubredoxin Rubredoxin; 33.4 16 0.00035 26.1 0.3 13 274-286 36-48 (50)
90 PF14738 PaaSYMP: Solute carri 32.7 2.2E+02 0.0047 24.9 7.3 55 112-166 94-148 (154)
91 PF12861 zf-Apc11: Anaphase-pr 32.4 35 0.00075 27.2 2.1 40 243-283 34-82 (85)
92 PHA03415 putative internal vir 32.1 1.5E+02 0.0033 32.8 7.3 86 101-186 299-397 (1019)
93 COG4306 Uncharacterized protei 32.0 18 0.00039 31.1 0.4 25 264-288 30-55 (160)
94 PF15619 Lebercilin: Ciliary p 32.0 3.2E+02 0.0069 24.7 8.5 59 106-170 51-109 (194)
95 KOG2068 MOT2 transcription fac 32.0 29 0.00064 33.9 1.9 47 240-287 248-302 (327)
96 PF15254 CCDC14: Coiled-coil d 31.8 3E+02 0.0065 30.3 9.4 61 120-180 494-563 (861)
97 TIGR00570 cdk7 CDK-activating 31.1 36 0.00078 33.1 2.4 12 273-284 44-55 (309)
98 KOG2660 Locus-specific chromos 30.5 9.2 0.0002 37.4 -1.8 50 236-286 10-64 (331)
99 PF09731 Mitofilin: Mitochondr 29.7 6.3E+02 0.014 26.0 11.6 21 171-191 385-405 (582)
100 PF11793 FANCL_C: FANCL C-term 29.7 16 0.00034 27.5 -0.3 12 273-284 56-67 (70)
101 PF06658 DUF1168: Protein of u 28.5 3.9E+02 0.0085 23.1 8.5 16 106-121 39-56 (142)
102 PF10217 DUF2039: Uncharacteri 28.3 11 0.00024 30.4 -1.4 41 237-282 51-91 (92)
103 KOG3161 Predicted E3 ubiquitin 27.8 21 0.00046 38.0 0.2 43 240-284 10-58 (861)
104 PF10571 UPF0547: Uncharacteri 27.3 27 0.00057 21.7 0.5 17 265-281 3-23 (26)
105 KOG4185 Predicted E3 ubiquitin 27.1 27 0.00058 32.7 0.7 23 259-282 27-54 (296)
106 PLN02915 cellulose synthase A 26.2 39 0.00085 37.9 1.9 43 241-283 15-68 (1044)
107 KOG1940 Zn-finger protein [Gen 26.0 14 0.00029 35.4 -1.5 45 242-288 159-211 (276)
108 PLN02436 cellulose synthase A 25.8 44 0.00095 37.6 2.1 43 241-283 36-89 (1094)
109 KOG1941 Acetylcholine receptor 25.8 4.5E+02 0.0098 26.9 8.9 41 241-282 365-415 (518)
110 PF10168 Nup88: Nuclear pore c 25.7 5.8E+02 0.013 27.7 10.4 32 176-207 630-661 (717)
111 KOG3564 GTPase-activating prot 25.5 3.9E+02 0.0085 28.0 8.5 79 119-206 27-105 (604)
112 KOG4218 Nuclear hormone recept 24.7 32 0.00069 34.3 0.7 13 242-254 16-28 (475)
113 KOG1705 Uncharacterized conser 23.4 36 0.00078 27.7 0.7 34 242-280 28-63 (110)
114 PF04423 Rad50_zn_hook: Rad50 23.4 28 0.00061 24.6 0.1 10 274-283 22-31 (54)
115 TIGR01562 FdhE formate dehydro 23.3 32 0.00069 33.3 0.4 42 241-282 184-234 (305)
116 KOG4657 Uncharacterized conser 22.8 3E+02 0.0065 25.9 6.6 62 103-170 91-159 (246)
117 PF08926 DUF1908: Domain of un 22.5 3.3E+02 0.0072 26.2 7.0 37 99-135 156-206 (282)
118 PF09726 Macoilin: Transmembra 22.5 1E+03 0.022 25.8 12.6 37 170-206 565-601 (697)
119 PF11629 Mst1_SARAH: C termina 22.5 3E+02 0.0066 19.8 5.3 37 105-145 11-47 (49)
120 COG4985 ABC-type phosphate tra 22.4 2.4E+02 0.0052 26.8 6.0 19 100-118 159-177 (289)
121 PHA02825 LAP/PHD finger-like p 22.4 44 0.00095 29.6 1.1 43 240-283 7-59 (162)
122 PF10886 DUF2685: Protein of u 22.3 45 0.00097 24.4 1.0 17 272-288 1-17 (54)
123 PF13240 zinc_ribbon_2: zinc-r 22.2 31 0.00068 20.6 0.1 17 265-281 2-22 (23)
124 COG4575 ElaB Uncharacterized c 22.2 4.2E+02 0.0091 21.9 6.7 35 101-135 11-45 (104)
125 PF10205 KLRAQ: Predicted coil 21.8 3.4E+02 0.0073 22.4 6.1 58 118-179 10-69 (102)
126 PF06638 Strabismus: Strabismu 21.5 66 0.0014 33.3 2.3 34 119-153 319-357 (505)
127 PHA02610 uvsY.-2 hypothetical 21.3 48 0.001 24.1 0.9 16 273-288 2-17 (53)
128 KOG1734 Predicted RING-contain 20.9 39 0.00084 32.6 0.5 45 239-284 222-282 (328)
129 KOG4421 Uncharacterized conser 20.9 5.4E+02 0.012 26.2 8.4 51 116-167 126-176 (637)
130 PF08112 ATP-synt_E_2: ATP syn 20.8 3.5E+02 0.0076 19.8 5.7 44 113-164 8-51 (56)
131 KOG4055 Uncharacterized conser 20.5 6E+02 0.013 23.3 7.9 40 109-149 88-128 (213)
132 TIGR03752 conj_TIGR03752 integ 20.4 6E+02 0.013 26.3 8.8 31 103-134 64-94 (472)
No 1
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-32 Score=245.68 Aligned_cols=189 Identities=33% Similarity=0.595 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhhhhhhHHHHhhccccch
Q 022683 102 SLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESE 181 (293)
Q Consensus 102 ~l~~~l~~q~~EiD~~i~~q~erlr~~l~e~r~rh~r~ll~avE~~~~~~LrqK~eELa~Ag~~y~eleerLr~w~~E~~ 181 (293)
++++++++|..|||+|+..++++||..+.++++++++.++.++|..+.++||+|++||.++|.++.+|+++++...+|.+
T Consensus 15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~ 94 (207)
T KOG1100|consen 15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ 94 (207)
T ss_pred cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence 57778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHhhhhhhcCccCCcccccCCCCCCcc----hHHHHHhhhhccccccccccCcceEEe
Q 022683 182 SWQRLARANEAMVMDLSNTLEQVKERIVLVSNRAEDAESVCCDSCDDNN----REQELKEERRKLACKRCNSRNSCVLLL 257 (293)
Q Consensus 182 ~Wq~hAr~neac~~~L~~~L~qvk~~~~~~~~~~~DaeS~~~~s~~~~~----~e~e~~~~~~~~~C~iC~~~~~~vvll 257 (293)
.|+..|+.|++.+.+|+.+|+++...........+++.++++....+.. ...+.........|+.|.++++.|+|+
T Consensus 95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~~~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~~~~~~~~~Cr~C~~~~~~Vlll 174 (207)
T KOG1100|consen 95 IWRDRAQTNEATVNSLRTNLDQVLAQCPASAPAEERGQKSCGDREADDGKSSYVDPSVDNFKRMRSCRKCGEREATVLLL 174 (207)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHhcccccCchhhhccccCccccccccccccchhhhhhhccccceecCcCCceEEee
Confidence 9999999999999999999999987641001123333332222111100 011112222223399999999999999
Q ss_pred CCCCcccchhhHhcCCCCCcccccccceEEEcc
Q 022683 258 PCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFG 290 (293)
Q Consensus 258 PC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~l 290 (293)
||+|+|+|..|...+..||+|+.+++++++||+
T Consensus 175 PCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 175 PCRHLCLCGICDESLRICPICRSPKTSSVEVNF 207 (207)
T ss_pred cccceEecccccccCccCCCCcChhhceeeccC
Confidence 999999999999989999999999999999985
No 2
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.7e-12 Score=124.37 Aligned_cols=51 Identities=33% Similarity=0.815 Sum_probs=47.4
Q ss_pred hccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccceEEEcc
Q 022683 240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASMEVFG 290 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v~l 290 (293)
....|+||++..+++++|||||+|+|..|+..+ ..||+||.+|...++|+.
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 367899999999999999999999999999987 579999999999999876
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.12 E-value=2.2e-11 Score=85.95 Aligned_cols=44 Identities=36% Similarity=0.890 Sum_probs=39.3
Q ss_pred ccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683 241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
+..|.+|+++.++++++||||.++|..|+..+ ..||+||++|+.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 35799999999999999999999999999988 899999999975
No 4
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.1e-11 Score=112.43 Aligned_cols=51 Identities=24% Similarity=0.679 Sum_probs=48.8
Q ss_pred ccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEccc
Q 022683 241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS 291 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS 291 (293)
+.+|+||++.+++.+||||||.+.|..|...|..|||||..|...++||-+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 679999999999999999999999999999999999999999999999853
No 5
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.7e-11 Score=88.92 Aligned_cols=50 Identities=26% Similarity=0.679 Sum_probs=45.9
Q ss_pred cccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccceEEEccc
Q 022683 242 LACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVASMEVFGS 291 (293)
Q Consensus 242 ~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~~v~v~lS 291 (293)
..|.||++++.+.+|.-|||.|+|.+|+..+ ..||+||++|.+.|+.|-|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 3699999999999999999999999999876 4799999999999998865
No 6
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.2e-10 Score=107.53 Aligned_cols=53 Identities=26% Similarity=0.689 Sum_probs=49.3
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEccc
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS 291 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS 291 (293)
.-...|+||.+++-+++|+||||+|+|..|+..+..||+||..|...+++|.|
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 34568999999999999999999999999999999999999999999999865
No 7
>KOG1101 consensus Apoptosis inhibitor IAP1 and related BIR domain proteins [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.53 E-value=1e-08 Score=88.38 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=43.5
Q ss_pred hcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHH
Q 022683 153 RQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLE 202 (293)
Q Consensus 153 rqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~ 202 (293)
...++.||+|||||++-+ ..|..|+++|+||.+||||+|.|.|.+...++
T Consensus 32 ~c~p~~lA~AGFy~~g~~D~~~Cf~C~~~L~~We~~DDPW~EH~k~~p~C~F~~~~k~~ 90 (147)
T KOG1101|consen 32 KCTPEQLAEAGFYYTGKQDCVKCFFCSGGLDDWEPGDDPWEEHAKWSPECEFLKLKKGR 90 (147)
T ss_pred CcCHHHHHhCCceeeCCCCceECcccCcccccCCCCCCcHHHHHhhCCCCceeecccch
Confidence 689999999999999955 56999999999999999999999995544433
No 8
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.29 E-value=1.9e-07 Score=91.35 Aligned_cols=51 Identities=31% Similarity=0.653 Sum_probs=46.9
Q ss_pred cccccccccCcceEEeCCCCcccchhhHhcC------CCCCcccccccceEEEcccCC
Q 022683 242 LACKRCNSRNSCVLLLPCRHLCSCKQCEAFL------VSCPVCNSAKVASMEVFGSDF 293 (293)
Q Consensus 242 ~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l------~~CPvCr~~i~~~v~v~lS~~ 293 (293)
.+||||-+++.+|-+-||||+ +|..|-... ..||+||..|+++-.|.+.+|
T Consensus 370 eLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid~F 426 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIIDPF 426 (563)
T ss_pred HHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceeeecc
Confidence 589999999999999999999 999997754 699999999999999988777
No 9
>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....
Probab=98.09 E-value=7.2e-07 Score=67.11 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=35.8
Q ss_pred hcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683 153 RQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM 195 (293)
Q Consensus 153 rqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~ 195 (293)
....++||+|||||++-+ ..|..|+.+|+||.+|.+++|.|.+
T Consensus 17 ~~~~~~LA~aGFyy~~~~d~v~C~~C~~~l~~w~~~Ddp~~~H~~~sp~C~f 68 (70)
T PF00653_consen 17 PVSPEKLARAGFYYTGTGDRVRCFYCGLELDNWEPNDDPWEEHKRHSPNCPF 68 (70)
T ss_dssp SSHHHHHHHTTEEEESSTTEEEETTTTEEEES-STT--HHHHHHHHSTTBHH
T ss_pred CCCHHHHHHCCCEEcCCCCEEEEeccCCEEeCCCCCCCHHHHHHHHCcCCee
Confidence 466899999999999963 4588999999999999999999998
No 10
>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat. Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.
Probab=98.00 E-value=1.1e-06 Score=65.85 Aligned_cols=49 Identities=12% Similarity=0.052 Sum_probs=41.7
Q ss_pred HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683 147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM 195 (293)
Q Consensus 147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~ 195 (293)
.++.......++||+|||||++.+ ..|..|++.++||++|++++|.|.+
T Consensus 11 ~w~~~~~~~~~~LA~~Gfyy~~~~d~v~C~~C~~~l~~w~~~d~p~~~H~~~~p~C~f 68 (71)
T smart00238 11 NWPYNSKLTPEQLAEAGFYYTGVGDEVKCFFCGGELDNWEPGDDPWEEHKKWSPNCPF 68 (71)
T ss_pred cCCCCccCCHHHHHHcCCeECCCCCEEEeCCCCCCcCCCCCCCCHHHHHhHhCcCCcC
Confidence 455445678999999999999843 3488999999999999999999987
No 11
>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.
Probab=97.90 E-value=2.1e-06 Score=63.88 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=41.1
Q ss_pred HHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683 148 AMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM 195 (293)
Q Consensus 148 ~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~ 195 (293)
+...+....++||++||||++-. ..|..|+..++||++|++++|.|.+
T Consensus 10 w~~~~~~~~~~La~~Gfyy~~~~d~v~C~~C~~~~~~w~~~d~p~~~H~~~~p~C~f 66 (69)
T cd00022 10 WPISLKVTPEKLAEAGFYYTGRGDEVKCFFCGLELKNWEPGDDPWEEHKRWSPNCPF 66 (69)
T ss_pred CCCCccCCHHHHHHcCCeEcCCCCEEEeCCCCCCccCCCCCCCHHHHHhHhCcCCcC
Confidence 44446778899999999999853 4478999999999999999999988
No 12
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00014 Score=76.01 Aligned_cols=147 Identities=27% Similarity=0.347 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhHhhcCHHHHHHHhhhhhhhHHHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhh-hh------c
Q 022683 140 VLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIV-LV------S 212 (293)
Q Consensus 140 ll~avE~~~~~~LrqK~eELa~Ag~~y~eleerLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~-~~------~ 212 (293)
.+...+.....-++....-|+.-++.-++++..+..+..+-+--+............+...|+..+-... +. .
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~ 614 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLK 614 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555666666666666666555555555444444444444444444444444322100 00 0
Q ss_pred CccCCc--ccccCCCCCCcchHHHHHhhhhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc-
Q 022683 213 NRAEDA--ESVCCDSCDDNNREQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA- 284 (293)
Q Consensus 213 ~~~~Da--eS~~~~s~~~~~~e~e~~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~- 284 (293)
...... .+. .++++ ....++.++-.....|.+|.+|..++++.-|+|+ +|..|.... .+||.|.+++..
T Consensus 615 ~kle~~k~~~~-~~s~d-~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 615 RKLERLKKEES-GASAD-EVLAEELKEYKELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred HHHHHhccccc-ccccc-HHHHHHHHHHHhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 000000 000 11111 1224566677788999999999999999999999 999998754 899999998754
Q ss_pred -eEEEc
Q 022683 285 -SMEVF 289 (293)
Q Consensus 285 -~v~v~ 289 (293)
+.+||
T Consensus 692 Dv~~I~ 697 (698)
T KOG0978|consen 692 DVHRIH 697 (698)
T ss_pred cccccC
Confidence 44444
No 13
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.62 E-value=3.1e-05 Score=69.68 Aligned_cols=50 Identities=24% Similarity=0.538 Sum_probs=40.3
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHhc--------------------CCCCCcccccccc--eEEEc
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF--------------------LVSCPVCNSAKVA--SMEVF 289 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~--------------------l~~CPvCr~~i~~--~v~v~ 289 (293)
.+...|.||++...+.++.||+|+ .|..|-.. ...||+||.+++. .+.||
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 345789999999999999999997 89999853 1479999999965 44444
No 14
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.52 E-value=5.4e-05 Score=52.05 Aligned_cols=36 Identities=31% Similarity=0.821 Sum_probs=30.9
Q ss_pred cccccccC---cceEEeCCCCcccchhhHhcCC----CCCcccc
Q 022683 244 CKRCNSRN---SCVLLLPCRHLCSCKQCEAFLV----SCPVCNS 280 (293)
Q Consensus 244 C~iC~~~~---~~vvllPC~Hl~lC~~C~~~l~----~CPvCr~ 280 (293)
|.+|++.- ...++++|||. +|..|...+. .||+||.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 77887765 46889999999 9999999887 9999984
No 15
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.48 E-value=3.9e-05 Score=51.29 Aligned_cols=34 Identities=35% Similarity=0.837 Sum_probs=28.1
Q ss_pred cccccccCcce-EEeCCCCcccchhhHhcC----CCCCcc
Q 022683 244 CKRCNSRNSCV-LLLPCRHLCSCKQCEAFL----VSCPVC 278 (293)
Q Consensus 244 C~iC~~~~~~v-vllPC~Hl~lC~~C~~~l----~~CPvC 278 (293)
|.||++...+. +++||||. .|.+|.... ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 78999998887 78999999 899998764 789987
No 16
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.37 E-value=0.00011 Score=68.21 Aligned_cols=48 Identities=23% Similarity=0.615 Sum_probs=37.2
Q ss_pred hccccccccccCcc--------eEEeCCCCcccchhhHhc----CCCCCcccccccceEEE
Q 022683 240 RKLACKRCNSRNSC--------VLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVASMEV 288 (293)
Q Consensus 240 ~~~~C~iC~~~~~~--------vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~~v~v 288 (293)
....|.||++.-.. .++.||+|. +|..|-.. -..||+||.++.+.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 35689999996322 466789997 99999854 37999999999877764
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.33 E-value=0.00017 Score=45.76 Aligned_cols=34 Identities=32% Similarity=0.848 Sum_probs=29.8
Q ss_pred cccccccCcceEEeCCCCcccchhhHhc-----CCCCCcc
Q 022683 244 CKRCNSRNSCVLLLPCRHLCSCKQCEAF-----LVSCPVC 278 (293)
Q Consensus 244 C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----l~~CPvC 278 (293)
|.+|++.....+++||+|. .|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 89999874 3579987
No 18
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.08 E-value=0.00018 Score=49.13 Aligned_cols=36 Identities=36% Similarity=0.790 Sum_probs=29.2
Q ss_pred cccccccc---CcceEEeCCCCcccchhhHhcC----CCCCccc
Q 022683 243 ACKRCNSR---NSCVLLLPCRHLCSCKQCEAFL----VSCPVCN 279 (293)
Q Consensus 243 ~C~iC~~~---~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr 279 (293)
.|.||++. ...++.+||+|. +|..|.... .+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 58899886 457888999997 999998764 7999997
No 19
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.05 E-value=0.00054 Score=44.96 Aligned_cols=39 Identities=33% Similarity=0.829 Sum_probs=30.1
Q ss_pred ccccccccC-cceEEeCCCCcccchhhHhc-----CCCCCcccccc
Q 022683 243 ACKRCNSRN-SCVLLLPCRHLCSCKQCEAF-----LVSCPVCNSAK 282 (293)
Q Consensus 243 ~C~iC~~~~-~~vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i 282 (293)
.|.+|++.. ..+.+.||+|. +|..|... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 488999987 44555569999 89999863 35799999753
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00026 Score=62.91 Aligned_cols=49 Identities=22% Similarity=0.496 Sum_probs=38.2
Q ss_pred ccccccccccCcceE-E-eCCCCcccchhhHhcC----CCCCccccccc--ceEEEcc
Q 022683 241 KLACKRCNSRNSCVL-L-LPCRHLCSCKQCEAFL----VSCPVCNSAKV--ASMEVFG 290 (293)
Q Consensus 241 ~~~C~iC~~~~~~vv-l-lPC~Hl~lC~~C~~~l----~~CPvCr~~i~--~~v~v~l 290 (293)
...|.||++.....+ + --|||+ +|+.|.... .+||+|+..|+ .+++|||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 368999999866655 3 589999 999999864 79999996554 4667765
No 21
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00058 Score=62.84 Aligned_cols=46 Identities=24% Similarity=0.494 Sum_probs=39.2
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHhcC-------CCCCcccccccce
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-------VSCPVCNSAKVAS 285 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-------~~CPvCr~~i~~~ 285 (293)
...-.|-||++...+-|+-+|||| .|=.|--+. +.||||++.|+..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccc
Confidence 345689999999999999999999 899997653 7899999988754
No 22
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.85 E-value=0.00047 Score=50.28 Aligned_cols=43 Identities=28% Similarity=0.614 Sum_probs=37.0
Q ss_pred ccccccccccCcceEEeCCCCcccchhhHhc--CCCCCcccccccc
Q 022683 241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAF--LVSCPVCNSAKVA 284 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~--l~~CPvCr~~i~~ 284 (293)
...|..|......-+++||+|+ +|..|... ...||+|..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 4579999999899999999999 89999865 4899999998764
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=96.83 E-value=0.00047 Score=63.41 Aligned_cols=46 Identities=24% Similarity=0.548 Sum_probs=35.2
Q ss_pred hhhccccccccccC---------cceEEeCCCCcccchhhHhcC----------CCCCcccccccc
Q 022683 238 ERRKLACKRCNSRN---------SCVLLLPCRHLCSCKQCEAFL----------VSCPVCNSAKVA 284 (293)
Q Consensus 238 ~~~~~~C~iC~~~~---------~~vvllPC~Hl~lC~~C~~~l----------~~CPvCr~~i~~ 284 (293)
...+..|.||++.. +--+|.||+|. +|..|-... ..||+||..++.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 45567999999862 12577899999 999997643 349999998764
No 24
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.78 E-value=0.00053 Score=45.77 Aligned_cols=34 Identities=38% Similarity=0.906 Sum_probs=29.3
Q ss_pred cccccccCcceE-EeCCCCcccchhhHhcC------CCCCcc
Q 022683 244 CKRCNSRNSCVL-LLPCRHLCSCKQCEAFL------VSCPVC 278 (293)
Q Consensus 244 C~iC~~~~~~vv-llPC~Hl~lC~~C~~~l------~~CPvC 278 (293)
|.||.+.....+ ++||+|. +|..|.... ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 789999988877 9999999 999998754 579887
No 25
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.00053 Score=64.92 Aligned_cols=48 Identities=25% Similarity=0.512 Sum_probs=38.6
Q ss_pred ccccccccccCcceEEeCCCCcccchhhHhc----CCCCCcccccccceEEEc
Q 022683 241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVASMEVF 289 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~~v~v~ 289 (293)
...|.+|+++..+--..||||+ +|-.|-.. -..||+||....-.--|.
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVIC 290 (293)
T ss_pred CCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcceee
Confidence 4789999999999888899999 78888543 268999999877654443
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.52 E-value=0.0009 Score=66.30 Aligned_cols=48 Identities=23% Similarity=0.523 Sum_probs=39.9
Q ss_pred HhhhhccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683 236 KEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 236 ~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
..+.....|.||.+.-..-++.||+|. +|..|-... ..||+|+.++..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 345667899999999888888999999 899998742 579999998764
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0023 Score=64.72 Aligned_cols=43 Identities=28% Similarity=0.649 Sum_probs=38.2
Q ss_pred ccccccccccCcceEEeCCCCcccchhhHhcC---------CCCCcccccccc
Q 022683 241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL---------VSCPVCNSAKVA 284 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l---------~~CPvCr~~i~~ 284 (293)
...|.||++.+...+..-|||. .|-.|--.+ ..||+|+..|.-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999999999999999999 899996542 799999999987
No 28
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0021 Score=56.65 Aligned_cols=42 Identities=36% Similarity=0.770 Sum_probs=35.8
Q ss_pred hhhccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccc
Q 022683 238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNS 280 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~ 280 (293)
..+...|.||++.-..-.++||+|. +|..|.... -.||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 3456789999998777799999999 999999875 48999993
No 29
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.98 E-value=0.0037 Score=60.94 Aligned_cols=47 Identities=26% Similarity=0.726 Sum_probs=40.1
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHhcC------CCCCcccccccceE
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL------VSCPVCNSAKVASM 286 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l------~~CPvCr~~i~~~v 286 (293)
.+.+.|.||-+.-.-+.++||+|. .|-.|+.++ +.||+||..-..++
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 346799999999998999999999 899999875 89999998755443
No 30
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0023 Score=62.42 Aligned_cols=45 Identities=22% Similarity=0.544 Sum_probs=38.0
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHhc----CCCCCcccccccc
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVA 284 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~ 284 (293)
.++..|.||+..+++.+|-||+|. .|+.|-.. .+.|-.|..++..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence 356799999999999999999999 89999875 2788888777654
No 31
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.91 E-value=0.0061 Score=43.90 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=35.0
Q ss_pred cccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683 242 LACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 242 ~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
..|.+|++--.+-++.||||. .|+.|-... ..||+|+.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 469999998888788999987 899998754 689999998743
No 32
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=95.71 E-value=0.0056 Score=41.93 Aligned_cols=34 Identities=38% Similarity=0.834 Sum_probs=25.6
Q ss_pred cccccccCcceEEeCCCCcccchhhHhcC--------CCCCcc
Q 022683 244 CKRCNSRNSCVLLLPCRHLCSCKQCEAFL--------VSCPVC 278 (293)
Q Consensus 244 C~iC~~~~~~vvllPC~Hl~lC~~C~~~l--------~~CPvC 278 (293)
|.||++--.+=+.++|||. +|..|-.+. -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 7899999899889999999 999998764 268887
No 33
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.0056 Score=57.52 Aligned_cols=41 Identities=27% Similarity=0.636 Sum_probs=34.9
Q ss_pred ccccccccccCcceEEeCCCCcccchhhHhc------CCCCCcccccc
Q 022683 241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAF------LVSCPVCNSAK 282 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~------l~~CPvCr~~i 282 (293)
...|.+|.+..-+-.-.||||+ +|-.|--. ...||+||+..
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhc
Confidence 5689999999999999999999 77777655 36799999864
No 34
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.12 E-value=0.0082 Score=41.60 Aligned_cols=27 Identities=41% Similarity=0.917 Sum_probs=16.6
Q ss_pred cccccccCcc----eEEeCCCCcccchhhHhcC
Q 022683 244 CKRCNSRNSC----VLLLPCRHLCSCKQCEAFL 272 (293)
Q Consensus 244 C~iC~~~~~~----vvllPC~Hl~lC~~C~~~l 272 (293)
|.||++ ..+ -++|||||. +|.+|..++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 778888 555 577899999 999998765
No 35
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=94.86 E-value=0.011 Score=56.44 Aligned_cols=46 Identities=28% Similarity=0.535 Sum_probs=38.9
Q ss_pred hhhhccccccccccCcceEEeCCCCcccchhhHhcC----CCCCccccccc
Q 022683 237 EERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKV 283 (293)
Q Consensus 237 ~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~ 283 (293)
.+.....|.||.+.-+--++-||||- +|.-|-..- ..||+||.+..
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred cchhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHH
Confidence 34556789999999999999999999 899998763 79999998754
No 36
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=94.82 E-value=0.0087 Score=58.24 Aligned_cols=49 Identities=27% Similarity=0.545 Sum_probs=42.1
Q ss_pred HhhhhccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccce
Q 022683 236 KEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVAS 285 (293)
Q Consensus 236 ~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~ 285 (293)
..+.+...|-||++--..-++.||+|. +|.-|-... ..||.|+.+++.+
T Consensus 18 k~lD~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 18 KTLDDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred hhhHHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 456677899999999999999999999 899998865 7999999987653
No 37
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.023 Score=54.59 Aligned_cols=46 Identities=30% Similarity=0.588 Sum_probs=35.0
Q ss_pred hhhhccccccccccC---cceEEeCCCCcccchhhHhcC-----CCCCccccccc
Q 022683 237 EERRKLACKRCNSRN---SCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKV 283 (293)
Q Consensus 237 ~~~~~~~C~iC~~~~---~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~ 283 (293)
+......|.||+++- -.++.+||.|. +=..|..+. .+||+||.++.
T Consensus 319 ea~~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 319 EADKGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred hcCCCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 344557899999852 23778899998 667787763 69999999874
No 38
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.028 Score=57.66 Aligned_cols=44 Identities=23% Similarity=0.482 Sum_probs=36.7
Q ss_pred hhhccccccccccCcc-----eEEeCCCCcccchhhHhcC----CCCCcccccc
Q 022683 238 ERRKLACKRCNSRNSC-----VLLLPCRHLCSCKQCEAFL----VSCPVCNSAK 282 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~-----vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i 282 (293)
......|.||.+.-.. ...+||+|. ++..|-.+. ..||+||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence 3446789999998777 789999999 899998763 8999999943
No 39
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.031 Score=55.11 Aligned_cols=44 Identities=23% Similarity=0.536 Sum_probs=30.6
Q ss_pred hhhccccccccccC-------------cceEEeCCCCcccchhhHhc----CCCCCcccccc
Q 022683 238 ERRKLACKRCNSRN-------------SCVLLLPCRHLCSCKQCEAF----LVSCPVCNSAK 282 (293)
Q Consensus 238 ~~~~~~C~iC~~~~-------------~~vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i 282 (293)
.++++.|.||++.- ..--=+||||. +=-.|-+. -++||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 45678999999971 11134799997 44444432 38999999984
No 40
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=92.20 E-value=0.074 Score=40.44 Aligned_cols=27 Identities=26% Similarity=0.664 Sum_probs=19.7
Q ss_pred cceEEeCCCCcccchhhHhc----CCCCCccc
Q 022683 252 SCVLLLPCRHLCSCKQCEAF----LVSCPVCN 279 (293)
Q Consensus 252 ~~vvllPC~Hl~lC~~C~~~----l~~CPvCr 279 (293)
..+++.+|+|. +-..|-.. -..||+||
T Consensus 43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 55677899999 77788664 27999998
No 41
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=91.84 E-value=0.12 Score=39.11 Aligned_cols=45 Identities=29% Similarity=0.572 Sum_probs=24.7
Q ss_pred hhhhccccccccccCcc-eEEeCCCCcccchhhHhcC--CCCCcccccc
Q 022683 237 EERRKLACKRCNSRNSC-VLLLPCRHLCSCKQCEAFL--VSCPVCNSAK 282 (293)
Q Consensus 237 ~~~~~~~C~iC~~~~~~-vvllPC~Hl~lC~~C~~~l--~~CPvCr~~i 282 (293)
.....+.|.+|.+--.. |.+--|.|. +|..|.... ..||+|+.+.
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 34566889999987555 457799999 999998875 7899999875
No 42
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=0.11 Score=50.79 Aligned_cols=43 Identities=26% Similarity=0.568 Sum_probs=30.5
Q ss_pred ccccccccc---CcceEEeCCCCcccchhhHhcC-----CCCCcccccccce
Q 022683 242 LACKRCNSR---NSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVAS 285 (293)
Q Consensus 242 ~~C~iC~~~---~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~~ 285 (293)
..|.||++. .-.+.+|||.|.--| .|-... +.||+|+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~-~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHV-NCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhh-ccchhhHhhcCccCCCCCCcCCCC
Confidence 479999885 334667999999443 465442 5699999987654
No 43
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=91.22 E-value=0.18 Score=48.80 Aligned_cols=49 Identities=6% Similarity=-0.069 Sum_probs=42.8
Q ss_pred ccccccccccCcceEEeCCCCcccchhhHhcC--CCCCcccccccceEEEc
Q 022683 241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL--VSCPVCNSAKVASMEVF 289 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l--~~CPvCr~~i~~~v~v~ 289 (293)
.+.|.+|..+-.+.++.||+|.-.|..|+..- ..||+|....-..++|.
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i~ 393 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPIN 393 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeecC
Confidence 46899999999999999999999999999743 69999998877776653
No 44
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=0.16 Score=48.24 Aligned_cols=44 Identities=23% Similarity=0.597 Sum_probs=35.7
Q ss_pred hhccccccccccCcc-eEEeCCCCcccchhhHhcC------CCCCccccccc
Q 022683 239 RRKLACKRCNSRNSC-VLLLPCRHLCSCKQCEAFL------VSCPVCNSAKV 283 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~-vvllPC~Hl~lC~~C~~~l------~~CPvCr~~i~ 283 (293)
.....|.+|.+.+.- .+..||||. .|..|...- -.||.|..+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 345689999999876 677899996 899998753 38999998766
No 45
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.67 E-value=0.14 Score=50.95 Aligned_cols=45 Identities=27% Similarity=0.570 Sum_probs=34.3
Q ss_pred hhhccccccccccCcc---eEEeCCCCcccchhhHhcC------------CCCCccccccc
Q 022683 238 ERRKLACKRCNSRNSC---VLLLPCRHLCSCKQCEAFL------------VSCPVCNSAKV 283 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~---vvllPC~Hl~lC~~C~~~l------------~~CPvCr~~i~ 283 (293)
.+....|.||++.... ++|+||+|+ +|+.|.... -+||-|..+-.
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~ 240 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSV 240 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCCccc
Confidence 3456789999997654 889999998 999998753 47777665433
No 46
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=0.15 Score=49.86 Aligned_cols=48 Identities=21% Similarity=0.395 Sum_probs=38.0
Q ss_pred hhccccccccccCcceE-----E---eCCCCcccchhhHhc-----------CCCCCcccccccceEE
Q 022683 239 RRKLACKRCNSRNSCVL-----L---LPCRHLCSCKQCEAF-----------LVSCPVCNSAKVASME 287 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vv-----l---lPC~Hl~lC~~C~~~-----------l~~CPvCr~~i~~~v~ 287 (293)
..+..|-||++.-.... | .+|-|. +|..|... .+.||+||.+....+.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 34678999999877766 5 679999 99999764 3799999998776553
No 47
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.37 E-value=0.42 Score=45.01 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=38.6
Q ss_pred hhhcccccccccc----CcceEEeCCCCcccchhhHhcC----CCCCcccccccce
Q 022683 238 ERRKLACKRCNSR----NSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVAS 285 (293)
Q Consensus 238 ~~~~~~C~iC~~~----~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~ 285 (293)
.....+|.+|.+. ..+++|-||||+ +|.+|..++ ..||+|..+.+..
T Consensus 218 ~s~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 218 ASKRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred hccceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCccc
Confidence 3467899999885 456788999998 899999987 6999999887653
No 48
>PF04641 Rtf2: Rtf2 RING-finger
Probab=87.26 E-value=0.49 Score=44.16 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=36.3
Q ss_pred hhcccccccccc----CcceEEeCCCCcccchhhHhcCC---CCCcccccccce
Q 022683 239 RRKLACKRCNSR----NSCVLLLPCRHLCSCKQCEAFLV---SCPVCNSAKVAS 285 (293)
Q Consensus 239 ~~~~~C~iC~~~----~~~vvllPC~Hl~lC~~C~~~l~---~CPvCr~~i~~~ 285 (293)
.....|.|.... ..-|+|.||||+ ++..+...+. .||+|..+++..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence 446789888754 456778899997 7888888776 899999997754
No 49
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.07 E-value=0.42 Score=45.93 Aligned_cols=45 Identities=24% Similarity=0.484 Sum_probs=34.0
Q ss_pred hhccccccccccCcceEE-eCCCCcccchhhHh-cCCCCCcccccccc
Q 022683 239 RRKLACKRCNSRNSCVLL-LPCRHLCSCKQCEA-FLVSCPVCNSAKVA 284 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvl-lPC~Hl~lC~~C~~-~l~~CPvCr~~i~~ 284 (293)
.+-..|.+|++.-.-=++ -+=||+ +|..|.. ....||.||-+++.
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcccceecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 345689999987554444 234899 8999995 45899999999983
No 50
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=84.59 E-value=0.29 Score=48.62 Aligned_cols=41 Identities=22% Similarity=0.435 Sum_probs=0.0
Q ss_pred cCcceEEeCCCCcccc----hhhHhcC--------CCCCcccccccc---eEEEcc
Q 022683 250 RNSCVLLLPCRHLCSC----KQCEAFL--------VSCPVCNSAKVA---SMEVFG 290 (293)
Q Consensus 250 ~~~~vvllPC~Hl~lC----~~C~~~l--------~~CPvCr~~i~~---~v~v~l 290 (293)
.+.+.+|.||||+|.= ..+.-.+ ..||+|-.++.+ .|++++
T Consensus 356 ~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~vrLiF 411 (416)
T PF04710_consen 356 GPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYVRLIF 411 (416)
T ss_dssp --------------------------------------------------------
T ss_pred CCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCceEEEE
Confidence 4567889999999621 1111111 599999999976 677655
No 51
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.31 E-value=0.41 Score=46.39 Aligned_cols=41 Identities=27% Similarity=0.805 Sum_probs=30.6
Q ss_pred cccccccccCcceE--EeCCCCcccchhhHhcC--CCCCcccccccc
Q 022683 242 LACKRCNSRNSCVL--LLPCRHLCSCKQCEAFL--VSCPVCNSAKVA 284 (293)
Q Consensus 242 ~~C~iC~~~~~~vv--llPC~Hl~lC~~C~~~l--~~CPvCr~~i~~ 284 (293)
-.|..|.. +.-|. ++||.|+ +|.+|+..- +.||.|-..|..
T Consensus 91 HfCd~Cd~-PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRCDF-PIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred EeecccCC-cceeeecccccchh-hhhhhhhcCccccCcCcccHHHH
Confidence 46777754 33333 7899998 999999864 699999876654
No 52
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=82.11 E-value=1.1 Score=39.47 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=17.2
Q ss_pred ccccccccccCcceEEeCCC
Q 022683 241 KLACKRCNSRNSCVLLLPCR 260 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvllPC~ 260 (293)
+..|.||++.+=++|||-|-
T Consensus 2 d~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CccCceeccCCCceEEEEec
Confidence 35799999999999998874
No 53
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=81.85 E-value=1 Score=34.00 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=31.8
Q ss_pred hccccccccccCcceEEeCCCCcccchhhHhc-----CCCCCcccccccc
Q 022683 240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF-----LVSCPVCNSAKVA 284 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i~~ 284 (293)
+...|.|+++--.+=+++||||. .++.|-.. -..||+|+.+++.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45789999999999999999966 78877654 3679999988875
No 54
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=81.50 E-value=16 Score=35.33 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHhhcCHHHHHHHh
Q 022683 101 QSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVES-----------------KAMNLMRQKEEDLIQAT 163 (293)
Q Consensus 101 ~~l~~~l~~q~~EiD~~i~~q~erlr~~l~e~r~rh~r~ll~avE~-----------------~~~~~LrqK~eELa~Ag 163 (293)
.+..++|.+.+.|+.-+|+.+..+|-..++.+. +.||.+|+. +++.|+|--..=.++++
T Consensus 23 ~sav~qL~~~r~~teelIr~rVrq~V~hVqaqE----reLLe~v~~rYqR~y~ema~~L~~LeavLqRir~G~~LVekM~ 98 (324)
T PF12126_consen 23 RSAVSQLGRARADTEELIRARVRQVVAHVQAQE----RELLEAVEARYQRDYEEMAGQLGRLEAVLQRIRTGGALVEKMK 98 (324)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH
Confidence 346779999999999999988777766555443 356666553 34455555555555556
Q ss_pred hhhhhhH------------HHHhhccccchHHHHHHHHhHHhHHHH
Q 022683 164 RRAMELE------------ACLRKAEMESESWQRLARANEAMVMDL 197 (293)
Q Consensus 164 ~~y~ele------------erLr~w~~E~~~Wq~hAr~neac~~~L 197 (293)
.|..+.| ++|++-++.+.-=.-+...|..|..-|
T Consensus 99 ~YASDQEVLdMh~FlreAL~rLrqeePq~lqa~V~td~F~E~k~rL 144 (324)
T PF12126_consen 99 LYASDQEVLDMHGFLREALERLRQEEPQNLQAAVRTDGFDEFKARL 144 (324)
T ss_pred HhcchHHHHHHHHHHHHHHHHhhhhcCcccccceecccHHHHHHHH
Confidence 6666533 345665555555555555566665533
No 55
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.97 E-value=0.74 Score=45.96 Aligned_cols=45 Identities=27% Similarity=0.641 Sum_probs=35.9
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHh----cCCCCCcccccccc
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEA----FLVSCPVCNSAKVA 284 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~----~l~~CPvCr~~i~~ 284 (293)
.+...|.+|+..--.-+-.||||. .|..|-. .-..||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 566789999988666666699999 8999833 33799999998764
No 56
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.11 E-value=0.73 Score=44.29 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=38.4
Q ss_pred ccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccceEEE
Q 022683 243 ACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASMEV 288 (293)
Q Consensus 243 ~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v 288 (293)
.|-||..--.+=|.--|+|. +|..|+.+- ..|++|...+.++..+
T Consensus 243 ~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 243 KCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred cccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccch
Confidence 59999998888777899999 899999863 6899999999887643
No 57
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=79.52 E-value=0.55 Score=43.01 Aligned_cols=46 Identities=24% Similarity=0.521 Sum_probs=39.1
Q ss_pred cccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccceEEE
Q 022683 242 LACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASMEV 288 (293)
Q Consensus 242 ~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v 288 (293)
..|.||...-.+-|.--|||. +|..|+..- ..|-+|.....+...|
T Consensus 197 F~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred eeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 489999998888788899999 999999753 7999999988777654
No 58
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=78.45 E-value=0.87 Score=48.33 Aligned_cols=40 Identities=23% Similarity=0.577 Sum_probs=34.8
Q ss_pred cccccccccCcceEEeCCCCcccchhhHhcC------CCCCccccccc
Q 022683 242 LACKRCNSRNSCVLLLPCRHLCSCKQCEAFL------VSCPVCNSAKV 283 (293)
Q Consensus 242 ~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l------~~CPvCr~~i~ 283 (293)
..|-+|.+ ..+.++.+|+|. .|.+|-... ..||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 79999999 888899999999 899998764 57999998764
No 59
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=76.64 E-value=1.6 Score=43.02 Aligned_cols=43 Identities=26% Similarity=0.579 Sum_probs=30.8
Q ss_pred hccccccccccCcceEEe-----------------C---CCCccc-chhhHhcC-----------------CCCCccccc
Q 022683 240 RKLACKRCNSRNSCVLLL-----------------P---CRHLCS-CKQCEAFL-----------------VSCPVCNSA 281 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvll-----------------P---C~Hl~l-C~~C~~~l-----------------~~CPvCr~~ 281 (293)
+...|..|+..+++|.|. | |.-..+ |.+|-.+. -.||+||+.
T Consensus 270 e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~ 349 (358)
T PF10272_consen 270 ELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAK 349 (358)
T ss_pred ccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccc
Confidence 456899999999998886 2 222223 77886653 589999987
Q ss_pred c
Q 022683 282 K 282 (293)
Q Consensus 282 i 282 (293)
+
T Consensus 350 F 350 (358)
T PF10272_consen 350 F 350 (358)
T ss_pred c
Confidence 4
No 60
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.57 E-value=0.91 Score=46.51 Aligned_cols=46 Identities=30% Similarity=0.648 Sum_probs=32.5
Q ss_pred hhhcccccccccc-----------------CcceEEeCCCCcccchhhHhc-C---C-CCCcccccccc
Q 022683 238 ERRKLACKRCNSR-----------------NSCVLLLPCRHLCSCKQCEAF-L---V-SCPVCNSAKVA 284 (293)
Q Consensus 238 ~~~~~~C~iC~~~-----------------~~~vvllPC~Hl~lC~~C~~~-l---~-~CPvCr~~i~~ 284 (293)
.++...|.||+.. .++.+|-||.|+ .=..|-.. | + .||+||.++..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4566789999872 224566699998 55667654 2 3 89999998753
No 61
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=76.35 E-value=0.97 Score=43.95 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=40.4
Q ss_pred hccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccceEEE
Q 022683 240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVASMEV 288 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~~v~v 288 (293)
..-.|.+|+++..-+.++||+|-+.|..|.... ..||+|.........|
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 345799999999999999999999998886543 5799998877666554
No 62
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.54 E-value=1.7 Score=44.03 Aligned_cols=45 Identities=31% Similarity=0.647 Sum_probs=31.6
Q ss_pred hhhccccccccccC-cc---eEEeCCCCcccchhhHhcC--CCCCccccccc
Q 022683 238 ERRKLACKRCNSRN-SC---VLLLPCRHLCSCKQCEAFL--VSCPVCNSAKV 283 (293)
Q Consensus 238 ~~~~~~C~iC~~~~-~~---vvllPC~Hl~lC~~C~~~l--~~CPvCr~~i~ 283 (293)
..+.+.|.+|++|- .+ ++-++|.|---| .|.... ..|||||-.-.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~-~cl~~w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHC-SCLMKWWDSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccch-HHHhhcccCcChhhhhhcC
Confidence 44568999999982 22 367899998555 455443 69999997554
No 63
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=72.25 E-value=2 Score=30.26 Aligned_cols=36 Identities=25% Similarity=0.721 Sum_probs=22.9
Q ss_pred ccccccc--cCcceEEeCCC-----CcccchhhHhc------CCCCCccc
Q 022683 243 ACKRCNS--RNSCVLLLPCR-----HLCSCKQCEAF------LVSCPVCN 279 (293)
Q Consensus 243 ~C~iC~~--~~~~vvllPC~-----Hl~lC~~C~~~------l~~CPvCr 279 (293)
.|+||++ .+.+.++.||. |. +=..|... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899996 56677889995 11 11245432 25899984
No 64
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=70.99 E-value=1.1 Score=48.35 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=33.3
Q ss_pred ccccccccccCcceEE---eCCCCcccchhhHhcC----CCCCcccccccceEE
Q 022683 241 KLACKRCNSRNSCVLL---LPCRHLCSCKQCEAFL----VSCPVCNSAKVASME 287 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvl---lPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~ 287 (293)
...|.+|...-.+-+. .+|.|. +|..|.... .+||+||..+..++.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeee
Confidence 3457777665444333 589998 999998765 899999998766554
No 65
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=67.49 E-value=1.7 Score=40.93 Aligned_cols=40 Identities=33% Similarity=0.822 Sum_probs=29.1
Q ss_pred hcccccccccc---Ccc--eEEeC-CCCcccchhhHhcC-----CCCC--cccc
Q 022683 240 RKLACKRCNSR---NSC--VLLLP-CRHLCSCKQCEAFL-----VSCP--VCNS 280 (293)
Q Consensus 240 ~~~~C~iC~~~---~~~--vvllP-C~Hl~lC~~C~~~l-----~~CP--vCr~ 280 (293)
.+..|.+|... ..+ +++-| |.|. .|..|..++ ..|| .|..
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 34589999763 233 44448 9999 899999876 5899 7754
No 66
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=65.93 E-value=2.9 Score=29.91 Aligned_cols=43 Identities=23% Similarity=0.672 Sum_probs=25.3
Q ss_pred cccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccceE
Q 022683 242 LACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASM 286 (293)
Q Consensus 242 ~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v 286 (293)
..||.|.-.....+ -|.---+|-.|-..| +.||+|..+....|
T Consensus 3 ~nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 3 YNCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ----SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred ccChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 35899988777755 588777999999887 79999998876654
No 67
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=65.69 E-value=2.7 Score=36.11 Aligned_cols=45 Identities=31% Similarity=0.690 Sum_probs=35.4
Q ss_pred ccccccccccCcceEEe-C---CCCcccchhhHhcC-------CCCCcccccccceE
Q 022683 241 KLACKRCNSRNSCVLLL-P---CRHLCSCKQCEAFL-------VSCPVCNSAKVASM 286 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvll-P---C~Hl~lC~~C~~~l-------~~CPvCr~~i~~~v 286 (293)
--.|-||.+...+--|| | || .-+|..|...+ ..||+|+...+++-
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 34699999888876665 2 66 66999999876 79999999887753
No 68
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.15 E-value=0.89 Score=44.71 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=38.8
Q ss_pred HHhhhhccccccccccCc-ceEEeCCCCcccchhhHhcC-----CCCCcccccccceE
Q 022683 235 LKEERRKLACKRCNSRNS-CVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVASM 286 (293)
Q Consensus 235 ~~~~~~~~~C~iC~~~~~-~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~~v 286 (293)
.........|.||++--. .+...-|.|. +|.+|-... ..||.||....+..
T Consensus 37 l~~~~~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 37 LAMFDIQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred HHHhhhhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 345566789999998633 3455679999 999998763 79999998766543
No 69
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=63.49 E-value=2.8 Score=29.86 Aligned_cols=38 Identities=24% Similarity=0.645 Sum_probs=16.1
Q ss_pred ccccccc--CcceEEeC--CCCcccchhhHhcC-----CCCCcccccc
Q 022683 244 CKRCNSR--NSCVLLLP--CRHLCSCKQCEAFL-----VSCPVCNSAK 282 (293)
Q Consensus 244 C~iC~~~--~~~vvllP--C~Hl~lC~~C~~~l-----~~CPvCr~~i 282 (293)
|.+|.+. ..+.-|.| |++. +|..|...+ ..||.||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 3444443 33444555 5555 899997654 5899999874
No 70
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=62.58 E-value=4.1 Score=39.84 Aligned_cols=51 Identities=24% Similarity=0.571 Sum_probs=32.4
Q ss_pred hccccccccc-------------------cCcceEEeCCCCcccchhhHh--cC----------CCCCcccccccc---e
Q 022683 240 RKLACKRCNS-------------------RNSCVLLLPCRHLCSCKQCEA--FL----------VSCPVCNSAKVA---S 285 (293)
Q Consensus 240 ~~~~C~iC~~-------------------~~~~vvllPC~Hl~lC~~C~~--~l----------~~CPvCr~~i~~---~ 285 (293)
..+.|.+|+. .+.+..|-||||+|.=+.=.- .+ ..||+|-....+ .
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~~~ 419 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQGY 419 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCCce
Confidence 3578999976 345667789999964222110 01 589999887654 5
Q ss_pred EEEcc
Q 022683 286 MEVFG 290 (293)
Q Consensus 286 v~v~l 290 (293)
|++++
T Consensus 420 ikliF 424 (429)
T KOG3842|consen 420 IKLIF 424 (429)
T ss_pred EEEEE
Confidence 55543
No 71
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.53 E-value=1.8e+02 Score=28.97 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcHHHHHHHHHHHH--HHHHHHHHHHHHHHH------HhHhhcCHHH
Q 022683 108 ELQRQELECILHIQSERLRSALLEQR--KQQLGAVLKSVESKA------MNLMRQKEED 158 (293)
Q Consensus 108 ~~q~~EiD~~i~~q~erlr~~l~e~r--~rh~r~ll~avE~~~------~~~LrqK~eE 158 (293)
.+-+.|++++...|.+ |++.=+|-+ +.++++....+|... ...|+.|.+|
T Consensus 221 ~r~eeeme~~~aeq~s-lkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 221 RRREEEMERLQAEQES-LKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3445566766655532 333333333 344455555555433 2346666666
No 72
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=57.93 E-value=4.7 Score=39.99 Aligned_cols=50 Identities=26% Similarity=0.455 Sum_probs=40.2
Q ss_pred hhhccccccccccCcceEE-eCCCCcccchhhHhcC----CCCCcccccccceEEE
Q 022683 238 ERRKLACKRCNSRNSCVLL-LPCRHLCSCKQCEAFL----VSCPVCNSAKVASMEV 288 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvl-lPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v 288 (293)
...+..|.+|..--.+-+. ..|||. +|..|.... ..||.|+..++..-.+
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhcc
Confidence 3456789999998888777 599999 899998764 5899998887765544
No 73
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=57.03 E-value=5.4 Score=37.65 Aligned_cols=48 Identities=27% Similarity=0.572 Sum_probs=25.7
Q ss_pred ccccccccccCcceEEeCC-----CCcccchhhHhcC----CCCCcccccccceEEEc
Q 022683 241 KLACKRCNSRNSCVLLLPC-----RHLCSCKQCEAFL----VSCPVCNSAKVASMEVF 289 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvllPC-----~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v~ 289 (293)
...|.+|...+.-.++.+= ||+ .|.-|...- -.||.|.......++.|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 4689999999888777764 444 799998764 59999999988888776
No 74
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=56.90 E-value=3.5 Score=26.99 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=12.4
Q ss_pred CCCCcccccccceEE
Q 022683 273 VSCPVCNSAKVASME 287 (293)
Q Consensus 273 ~~CPvCr~~i~~~v~ 287 (293)
..||+|.++...+.+
T Consensus 19 ~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 19 EKCPICGAPKEKFEE 33 (34)
T ss_pred CcCcCCCCchHHcEE
Confidence 699999998877654
No 75
>PLN02189 cellulose synthase
Probab=53.97 E-value=8.1 Score=43.01 Aligned_cols=43 Identities=21% Similarity=0.634 Sum_probs=33.6
Q ss_pred cccccccccc----CcceEEeCCC--CcccchhhHhcC-----CCCCccccccc
Q 022683 241 KLACKRCNSR----NSCVLLLPCR--HLCSCKQCEAFL-----VSCPVCNSAKV 283 (293)
Q Consensus 241 ~~~C~iC~~~----~~~vvllPC~--Hl~lC~~C~~~l-----~~CPvCr~~i~ 283 (293)
...|.||.+. ...-+|+.|. .+.+|+.|..-- +.||.|++..+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3489999997 6667899995 234899998642 79999998776
No 76
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=53.51 E-value=5.2 Score=39.51 Aligned_cols=42 Identities=21% Similarity=0.526 Sum_probs=30.1
Q ss_pred cccccccc----CcceEEeCCCCcccchhhHhcC-----CCCCcccccccce
Q 022683 243 ACKRCNSR----NSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVAS 285 (293)
Q Consensus 243 ~C~iC~~~----~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~~ 285 (293)
.|..|.+. ..+..=.|||-. +|..|...+ ..||.||...+.-
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhcccc
Confidence 59999984 333333456644 899998876 6999999877653
No 77
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=53.18 E-value=7.9 Score=30.16 Aligned_cols=29 Identities=28% Similarity=0.709 Sum_probs=20.5
Q ss_pred hcccccccccc--CcceEEeCCCCcccchhhH
Q 022683 240 RKLACKRCNSR--NSCVLLLPCRHLCSCKQCE 269 (293)
Q Consensus 240 ~~~~C~iC~~~--~~~vvllPC~Hl~lC~~C~ 269 (293)
+...|.+|... ...+++.||||+ .-..|.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~ 107 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCI 107 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeE-Eecccc
Confidence 34579999886 355677899987 455554
No 78
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=52.75 E-value=1.7e+02 Score=27.02 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=45.5
Q ss_pred HHHHHHcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHhh---------------cCHHHHHHHhhhhhhhHHHHhhc
Q 022683 115 ECILHIQSERLRS---ALLEQRKQQLGAVLKSVESKAMNLMR---------------QKEEDLIQATRRAMELEACLRKA 176 (293)
Q Consensus 115 D~~i~~q~erlr~---~l~e~r~rh~r~ll~avE~~~~~~Lr---------------qK~eELa~Ag~~y~eleerLr~w 176 (293)
.++|.+++|..+- -|+|.-.||+. +.|++.++..+.+ .-.++|-.|.++..+++.|||.+
T Consensus 71 ErILaLEad~~kWEqkYLEEs~mrq~a--~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~L 148 (205)
T PF12240_consen 71 ERILALEADMTKWEQKYLEESAMRQFA--MDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKAL 148 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHH
Confidence 4899999988763 37777788874 3344444444444 23689999999999999999988
Q ss_pred cc
Q 022683 177 EM 178 (293)
Q Consensus 177 ~~ 178 (293)
+.
T Consensus 149 ha 150 (205)
T PF12240_consen 149 HA 150 (205)
T ss_pred HH
Confidence 64
No 79
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=49.33 E-value=3.2e+02 Score=28.24 Aligned_cols=96 Identities=18% Similarity=0.130 Sum_probs=67.6
Q ss_pred chHHHHHHHHHHHHH----HHHHHHcHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHhHhhcCHHHHHHHhhhhhhhH
Q 022683 100 PQSLHTQLELQRQEL----ECILHIQSER----LRSALLEQRK-QQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELE 170 (293)
Q Consensus 100 ~~~l~~~l~~q~~Ei----D~~i~~q~er----lr~~l~e~r~-rh~r~ll~avE~~~~~~LrqK~eELa~Ag~~y~ele 170 (293)
+.=+.++|+-|+.-. -.+.+.|.+. +...++|.+. .|-...+.+++..+-++|.+....+.+--..-.++.
T Consensus 323 s~ll~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 323 SPLLTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777776533 2333444444 4455556665 666678888888888999999888888888777777
Q ss_pred HHHhhccccchHHHHHHHHhHHhHH
Q 022683 171 ACLRKAEMESESWQRLARANEAMVM 195 (293)
Q Consensus 171 erLr~w~~E~~~Wq~hAr~neac~~ 195 (293)
|-=+.+-.+-+.|+.+++.-+.-..
T Consensus 403 E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7777778889999999987765544
No 80
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=48.75 E-value=5.1 Score=25.83 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=12.8
Q ss_pred CCCCCcccccccceEE
Q 022683 272 LVSCPVCNSAKVASME 287 (293)
Q Consensus 272 l~~CPvCr~~i~~~v~ 287 (293)
-..||+|..+...++.
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 3699999998877664
No 81
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=46.01 E-value=3.3e+02 Score=27.46 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=30.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHcH----------HHHHHHHHHHHHHHHH
Q 022683 98 ALPQSLHTQLELQRQELECILHIQS----------ERLRSALLEQRKQQLG 138 (293)
Q Consensus 98 ~~~~~l~~~l~~q~~EiD~~i~~q~----------erlr~~l~e~r~rh~r 138 (293)
+-+||+..+|++.|..+-+-|..+. ++|.+.|+|-|+||-.
T Consensus 135 aeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeq 185 (561)
T KOG1103|consen 135 AEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQ 185 (561)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578898899888877766665554 4567788898999854
No 82
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=41.72 E-value=6.7 Score=40.83 Aligned_cols=42 Identities=26% Similarity=0.662 Sum_probs=34.3
Q ss_pred hccccccccccCcceEEeCCCCcccchhhHhcC---------CCCCcccccc
Q 022683 240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL---------VSCPVCNSAK 282 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l---------~~CPvCr~~i 282 (293)
....|.+|.+..-+.+.-.|.|. +|+-|.... -+||+|-...
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 34689999999999999999888 999998431 5999997654
No 83
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=34.92 E-value=11 Score=33.40 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=21.6
Q ss_pred ccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEE
Q 022683 241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASME 287 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~ 287 (293)
...|++| ||+ |.. ..-..||+|.+++..+.+
T Consensus 134 ~~vC~vC------------Gy~--~~g--e~P~~CPiCga~k~~F~~ 164 (166)
T COG1592 134 VWVCPVC------------GYT--HEG--EAPEVCPICGAPKEKFEK 164 (166)
T ss_pred EEEcCCC------------CCc--ccC--CCCCcCCCCCChHHHhhc
Confidence 4677776 665 444 445799999998876654
No 84
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=34.43 E-value=22 Score=39.85 Aligned_cols=43 Identities=21% Similarity=0.569 Sum_probs=31.2
Q ss_pred cccccccccc----CcceEEeCCCCc--ccchhhHhc-----CCCCCccccccc
Q 022683 241 KLACKRCNSR----NSCVLLLPCRHL--CSCKQCEAF-----LVSCPVCNSAKV 283 (293)
Q Consensus 241 ~~~C~iC~~~----~~~vvllPC~Hl--~lC~~C~~~-----l~~CPvCr~~i~ 283 (293)
...|.||.+. .-.=+|+-|..- .+|+.|..- -+.||.|++..+
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3489999986 333477888543 389999852 379999998765
No 85
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=33.87 E-value=23 Score=29.04 Aligned_cols=44 Identities=27% Similarity=0.514 Sum_probs=30.1
Q ss_pred cccccccccCcceEEeCCCC------cccchhhHhcC--------CCCCcccccccce
Q 022683 242 LACKRCNSRNSCVLLLPCRH------LCSCKQCEAFL--------VSCPVCNSAKVAS 285 (293)
Q Consensus 242 ~~C~iC~~~~~~vvllPC~H------l~lC~~C~~~l--------~~CPvCr~~i~~~ 285 (293)
-.|--|.+.-.+.-|.|=++ .++|..|-..+ ..||.|+++++-.
T Consensus 36 YaCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~ 93 (105)
T COG4357 36 YACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPG 93 (105)
T ss_pred hhHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCcc
Confidence 34666666666666666554 35777887654 5899999998754
No 86
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=33.84 E-value=27 Score=39.87 Aligned_cols=47 Identities=21% Similarity=0.506 Sum_probs=35.7
Q ss_pred ccccccccccCcceEEeC-CCCcc----cchhhHhcC--C-----CCCcccccccceEEE
Q 022683 241 KLACKRCNSRNSCVLLLP-CRHLC----SCKQCEAFL--V-----SCPVCNSAKVASMEV 288 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvllP-C~Hl~----lC~~C~~~l--~-----~CPvCr~~i~~~v~v 288 (293)
...|.-|...... .|.| ||+.. .|..|...+ . .||-|..+.....+.
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~ 725 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRR 725 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceE
Confidence 4789999986544 4888 99763 599998865 2 899999888776554
No 87
>PLN02400 cellulose synthase
Probab=33.67 E-value=24 Score=39.57 Aligned_cols=43 Identities=19% Similarity=0.629 Sum_probs=30.7
Q ss_pred cccccccccc----CcceEEeCCCCc--ccchhhHhc-----CCCCCccccccc
Q 022683 241 KLACKRCNSR----NSCVLLLPCRHL--CSCKQCEAF-----LVSCPVCNSAKV 283 (293)
Q Consensus 241 ~~~C~iC~~~----~~~vvllPC~Hl--~lC~~C~~~-----l~~CPvCr~~i~ 283 (293)
...|.||.+. +-.=+|+-|..- .+|+.|..- -+.||.|+...+
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3489999986 223367777432 289999853 379999998766
No 88
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.50 E-value=15 Score=32.40 Aligned_cols=25 Identities=32% Similarity=0.756 Sum_probs=20.5
Q ss_pred cchhhHhc-CCCCCcccccccceEEE
Q 022683 264 SCKQCEAF-LVSCPVCNSAKVASMEV 288 (293)
Q Consensus 264 lC~~C~~~-l~~CPvCr~~i~~~v~v 288 (293)
.|..|... +..||-|..+|.+.-++
T Consensus 30 fC~kCG~~tI~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 30 FCSKCGAKTITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHhhHHHHHHCcCCCCCCCCceec
Confidence 68888776 48999999999997654
No 89
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=33.44 E-value=16 Score=26.05 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=6.8
Q ss_pred CCCcccccccceE
Q 022683 274 SCPVCNSAKVASM 286 (293)
Q Consensus 274 ~CPvCr~~i~~~v 286 (293)
.||+|.+++..+.
T Consensus 36 ~CP~C~a~K~~F~ 48 (50)
T cd00730 36 VCPVCGAGKDDFE 48 (50)
T ss_pred CCCCCCCcHHHcE
Confidence 5555555554443
No 90
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=32.67 E-value=2.2e+02 Score=24.91 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=45.5
Q ss_pred HHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhhh
Q 022683 112 QELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRA 166 (293)
Q Consensus 112 ~EiD~~i~~q~erlr~~l~e~r~rh~r~ll~avE~~~~~~LrqK~eELa~Ag~~y 166 (293)
.||+.+-....+-|+..|.+..+.+-.....-+|..+.++...++..|++.-..+
T Consensus 94 ~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki~~~~ 148 (154)
T PF14738_consen 94 EEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKIEKER 148 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788777777888888998888777777888999999999999999998876543
No 91
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=32.42 E-value=35 Score=27.17 Aligned_cols=40 Identities=20% Similarity=0.437 Sum_probs=24.9
Q ss_pred ccccccccCc--ceEEeCCCCcccchhhHhc-------CCCCCccccccc
Q 022683 243 ACKRCNSRNS--CVLLLPCRHLCSCKQCEAF-------LVSCPVCNSAKV 283 (293)
Q Consensus 243 ~C~iC~~~~~--~vvllPC~Hl~lC~~C~~~-------l~~CPvCr~~i~ 283 (293)
.|..|..... .+++--|+|. +=.-|-.+ -..||+||++..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCccCCCCCCceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3555554322 3466679987 55556332 379999998754
No 92
>PHA03415 putative internal virion protein; Provisional
Probab=32.14 E-value=1.5e+02 Score=32.75 Aligned_cols=86 Identities=8% Similarity=0.179 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhhh--h
Q 022683 101 QSLHTQLELQRQELECILHIQSERLRSALLEQ-----------RKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRA--M 167 (293)
Q Consensus 101 ~~l~~~l~~q~~EiD~~i~~q~erlr~~l~e~-----------r~rh~r~ll~avE~~~~~~LrqK~eELa~Ag~~y--~ 167 (293)
+..++.+.+-+.|.|-+++.-.|-|.+.|.++ |.+.++..=.++|+++.+-|--.+++-.+.|.-- -
T Consensus 299 ~naas~~r~~~n~~~g~~~~~~~~~~~~~~~~~g~g~~~~~~~~s~r~~~ardale~kvt~eL~rrd~~ws~~G~v~~dp 378 (1019)
T PHA03415 299 DNAASFFRMNSNEADGLFAAWDDGLEKEIAKREGFGTAQIKLDASGRYADAKDALERKVADELARRDAEWSRFGAVMADP 378 (1019)
T ss_pred ccHHHHHHHhhhhhhhHHHHHHhHHHHHHHHhcCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhHHHHhcCCccCCC
Confidence 45678888999999999999999999999995 3445566667888888888866677666655433 2
Q ss_pred hhHHHHhhccccchHHHHH
Q 022683 168 ELEACLRKAEMESESWQRL 186 (293)
Q Consensus 168 eleerLr~w~~E~~~Wq~h 186 (293)
.+.-.|.++..+.+.|.+|
T Consensus 379 ~~dp~IarLAd~~~~~he~ 397 (1019)
T PHA03415 379 NLDPDIARLADESDAFHGQ 397 (1019)
T ss_pred CCChHHHHHHHHHHHHHHH
Confidence 2344566666666677666
No 93
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.04 E-value=18 Score=31.09 Aligned_cols=25 Identities=24% Similarity=0.747 Sum_probs=18.0
Q ss_pred cchhhHh-cCCCCCcccccccceEEE
Q 022683 264 SCKQCEA-FLVSCPVCNSAKVASMEV 288 (293)
Q Consensus 264 lC~~C~~-~l~~CPvCr~~i~~~v~v 288 (293)
+|..|.. .+..||+|.++|.+...|
T Consensus 30 fcskcgeati~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHHhcCCccCCccccccee
Confidence 4555544 357999999999987554
No 94
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=32.01 E-value=3.2e+02 Score=24.66 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhhhhhhH
Q 022683 106 QLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELE 170 (293)
Q Consensus 106 ~l~~q~~EiD~~i~~q~erlr~~l~e~r~rh~r~ll~avE~~~~~~LrqK~eELa~Ag~~y~ele 170 (293)
.++....|+.++|.-+.+.+|.-=+..|+-+- -+...-++||+++.+|.+.......|.
T Consensus 51 k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~------~~r~~~~klk~~~~el~k~~~~l~~L~ 109 (194)
T PF15619_consen 51 KYEDTEAELPQLLQRHNEEVRVLRERLRKSQE------QERELERKLKDKDEELLKTKDELKHLK 109 (194)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567777788888877776666654332 244556889999999998887666554
No 95
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=32.00 E-value=29 Score=33.93 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=35.9
Q ss_pred hcccccccccc----CcceEEeCCCCcccchhhHhcC----CCCCcccccccceEE
Q 022683 240 RKLACKRCNSR----NSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASME 287 (293)
Q Consensus 240 ~~~~C~iC~~~----~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~ 287 (293)
....|.+|.+- ...++=.||+|. +|-.|.... ..||.||.+....+.
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t~ 302 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNTK 302 (327)
T ss_pred cCCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCcc
Confidence 34689999983 455555688999 999998876 699999987765443
No 96
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=31.77 E-value=3e+02 Score=30.31 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=36.1
Q ss_pred HcHHHHHHHHHHHH--HHHHHHHHHHHHH---HHHhHhhcCHHHHHHHhhhhhhhHH----HHhhccccc
Q 022683 120 IQSERLRSALLEQR--KQQLGAVLKSVES---KAMNLMRQKEEDLIQATRRAMELEA----CLRKAEMES 180 (293)
Q Consensus 120 ~q~erlr~~l~e~r--~rh~r~ll~avE~---~~~~~LrqK~eELa~Ag~~y~elee----rLr~w~~E~ 180 (293)
+++.|++..++|+. -++++-=|.++|. .....||++++||.+-+-...+|.. .|.++.++.
T Consensus 494 ~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls~D~ 563 (861)
T PF15254_consen 494 IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLSVDS 563 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 35667777776664 2333333444443 2345688888888888877777763 344444444
No 97
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.09 E-value=36 Score=33.11 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.7
Q ss_pred CCCCcccccccc
Q 022683 273 VSCPVCNSAKVA 284 (293)
Q Consensus 273 ~~CPvCr~~i~~ 284 (293)
..||+|+.++..
T Consensus 44 ~~CP~C~~~lrk 55 (309)
T TIGR00570 44 GSCPECDTPLRK 55 (309)
T ss_pred CCCCCCCCccch
Confidence 489999987764
No 98
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=30.54 E-value=9.2 Score=37.37 Aligned_cols=50 Identities=22% Similarity=0.477 Sum_probs=39.3
Q ss_pred HhhhhccccccccccCcceE-EeCCCCcccchhhHhc----CCCCCcccccccceE
Q 022683 236 KEERRKLACKRCNSRNSCVL-LLPCRHLCSCKQCEAF----LVSCPVCNSAKVASM 286 (293)
Q Consensus 236 ~~~~~~~~C~iC~~~~~~vv-llPC~Hl~lC~~C~~~----l~~CPvCr~~i~~~v 286 (293)
.+.+.-..|.+|..--.+.. +.-|-|- +|+.|--. ...||.|...|.++.
T Consensus 10 ~~~n~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred hhcccceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 34556678999998877755 4469998 89999764 389999999998875
No 99
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=29.73 E-value=6.3e+02 Score=25.96 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=10.4
Q ss_pred HHHhhccccchHHHHHHHHhH
Q 022683 171 ACLRKAEMESESWQRLARANE 191 (293)
Q Consensus 171 erLr~w~~E~~~Wq~hAr~ne 191 (293)
.+|+.++.--..|......+.
T Consensus 385 ~~~~~le~~~~~~~~~~~~~~ 405 (582)
T PF09731_consen 385 SRLKALEEALDARSEAEDENR 405 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444444
No 100
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=29.66 E-value=16 Score=27.49 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=7.7
Q ss_pred CCCCcccccccc
Q 022683 273 VSCPVCNSAKVA 284 (293)
Q Consensus 273 ~~CPvCr~~i~~ 284 (293)
..||.|+.+|+-
T Consensus 56 G~CP~C~~~i~~ 67 (70)
T PF11793_consen 56 GECPYCSSPISW 67 (70)
T ss_dssp EE-TTT-SEEEG
T ss_pred cCCcCCCCeeeE
Confidence 469999998864
No 101
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=28.52 E-value=3.9e+02 Score=23.14 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=8.3
Q ss_pred HHHHH--HHHHHHHHHHc
Q 022683 106 QLELQ--RQELECILHIQ 121 (293)
Q Consensus 106 ~l~~q--~~EiD~~i~~q 121 (293)
|+||+ +.|.+|+=.++
T Consensus 39 HvYR~~RRrE~~Rl~~me 56 (142)
T PF06658_consen 39 HVYRASRRREYERLEYME 56 (142)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 45544 45666554443
No 102
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=28.27 E-value=11 Score=30.43 Aligned_cols=41 Identities=20% Similarity=0.542 Sum_probs=31.6
Q ss_pred hhhhccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccc
Q 022683 237 EERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAK 282 (293)
Q Consensus 237 ~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i 282 (293)
.+.....|..|..+.+-... |. +|..|+.....|+-|..+.
T Consensus 51 pLt~p~kC~~C~qktVk~AY----h~-iC~~Ca~~~~vCaKC~k~~ 91 (92)
T PF10217_consen 51 PLTQPKKCNKCQQKTVKHAY----HV-ICDPCAKELKVCAKCGKPP 91 (92)
T ss_pred cCCCCccccccccchHHHHH----HH-HHHHHHHhhccCcccCCCC
Confidence 34556789999887766543 43 8999999999999998753
No 103
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.76 E-value=21 Score=38.04 Aligned_cols=43 Identities=28% Similarity=0.568 Sum_probs=30.2
Q ss_pred hcccccccccc----CcceEEeCCCCcccchhhHhcC--CCCCcccccccc
Q 022683 240 RKLACKRCNSR----NSCVLLLPCRHLCSCKQCEAFL--VSCPVCNSAKVA 284 (293)
Q Consensus 240 ~~~~C~iC~~~----~~~vvllPC~Hl~lC~~C~~~l--~~CPvCr~~i~~ 284 (293)
+-..|.||... ...=+++-|||. +|+.|...+ ..|| |...-..
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~scp-~~~De~~ 58 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNASCP-TKRDEDS 58 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhccCC-CCccccc
Confidence 34578888543 334456779999 899999987 6899 6544333
No 104
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=27.28 E-value=27 Score=21.66 Aligned_cols=17 Identities=35% Similarity=0.899 Sum_probs=9.3
Q ss_pred chhhHhcC----CCCCccccc
Q 022683 265 CKQCEAFL----VSCPVCNSA 281 (293)
Q Consensus 265 C~~C~~~l----~~CPvCr~~ 281 (293)
|.+|...+ +.||.|.-.
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCC
Confidence 44555443 567777544
No 105
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.11 E-value=27 Score=32.66 Aligned_cols=23 Identities=35% Similarity=1.061 Sum_probs=20.5
Q ss_pred CCCcccchhhHhcC-----CCCCcccccc
Q 022683 259 CRHLCSCKQCEAFL-----VSCPVCNSAK 282 (293)
Q Consensus 259 C~Hl~lC~~C~~~l-----~~CPvCr~~i 282 (293)
|||- +|..|+..+ -.||.||.+.
T Consensus 27 c~h~-~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 27 CGHT-ICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred cCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence 9998 999999987 5889999985
No 106
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=26.21 E-value=39 Score=37.88 Aligned_cols=43 Identities=23% Similarity=0.631 Sum_probs=30.9
Q ss_pred cccccccccc----CcceEEeCCCCc--ccchhhHhc-----CCCCCccccccc
Q 022683 241 KLACKRCNSR----NSCVLLLPCRHL--CSCKQCEAF-----LVSCPVCNSAKV 283 (293)
Q Consensus 241 ~~~C~iC~~~----~~~vvllPC~Hl--~lC~~C~~~-----l~~CPvCr~~i~ 283 (293)
...|.||.+. .-.=+|+-|..- .+|+.|..- -+.||.|....+
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4579999986 222367778543 289999853 279999998766
No 107
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=25.96 E-value=14 Score=35.43 Aligned_cols=45 Identities=20% Similarity=0.506 Sum_probs=30.8
Q ss_pred cccccccc----cCcceEEeCCCCcccchhhHhcC----CCCCcccccccceEEE
Q 022683 242 LACKRCNS----RNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASMEV 288 (293)
Q Consensus 242 ~~C~iC~~----~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v 288 (293)
..|.+|.+ ....+..+||+|.-- ..|...+ -.||+|-. +....++
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~~~ 211 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMSHY 211 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHHHH
Confidence 34888876 356677889999964 4554433 69999988 5544433
No 108
>PLN02436 cellulose synthase A
Probab=25.81 E-value=44 Score=37.65 Aligned_cols=43 Identities=19% Similarity=0.588 Sum_probs=32.1
Q ss_pred cccccccccc----CcceEEeCCCCc--ccchhhHhcC-----CCCCccccccc
Q 022683 241 KLACKRCNSR----NSCVLLLPCRHL--CSCKQCEAFL-----VSCPVCNSAKV 283 (293)
Q Consensus 241 ~~~C~iC~~~----~~~vvllPC~Hl--~lC~~C~~~l-----~~CPvCr~~i~ 283 (293)
...|.||.+. .-.=+|+.|..- .+|+.|..-- +.||.|++..+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3489999986 233478899632 3899998643 79999998776
No 109
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=25.80 E-value=4.5e+02 Score=26.87 Aligned_cols=41 Identities=32% Similarity=0.712 Sum_probs=29.8
Q ss_pred ccccccccc----cCcceEEeCCCCcccchhhHhc------CCCCCcccccc
Q 022683 241 KLACKRCNS----RNSCVLLLPCRHLCSCKQCEAF------LVSCPVCNSAK 282 (293)
Q Consensus 241 ~~~C~iC~~----~~~~vvllPC~Hl~lC~~C~~~------l~~CPvCr~~i 282 (293)
...|-.|.+ ++-..--+||-|. +=..|... -..||-||.-+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHHH
Confidence 467999976 4555667899998 56677663 27999999433
No 110
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=25.73 E-value=5.8e+02 Score=27.66 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=18.9
Q ss_pred ccccchHHHHHHHHhHHhHHHHHHHHHHHHhh
Q 022683 176 AEMESESWQRLARANEAMVMDLSNTLEQVKER 207 (293)
Q Consensus 176 w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~ 207 (293)
+......|..-.+....-.-.|++.|++++.+
T Consensus 630 LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 630 LSEAEREFKKELERMKDQLQDLKASIEQLKKK 661 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556554444444456778888887754
No 111
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=25.46 E-value=3.9e+02 Score=28.00 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=51.8
Q ss_pred HHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhhhhhhHHHHhhccccchHHHHHHHHhHHhHHHHH
Q 022683 119 HIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLS 198 (293)
Q Consensus 119 ~~q~erlr~~l~e~r~rh~r~ll~avE~~~~~~LrqK~eELa~Ag~~y~eleerLr~w~~E~~~Wq~hAr~neac~~~L~ 198 (293)
-.+.+||++..++.+++.-| ...| |+.-+++|++|..+-..|+..|++...--++=.+.-|.-|+=...|-
T Consensus 27 e~ef~rl~k~fed~~ek~~r---~~ae------~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E 97 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKR---TDAE------LGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLE 97 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhh---hhHH------HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455677777777766555 2223 66777889999888888888888776666666655555555455555
Q ss_pred HHHHHHHh
Q 022683 199 NTLEQVKE 206 (293)
Q Consensus 199 ~~L~qvk~ 206 (293)
..+++++.
T Consensus 98 ~~i~~i~d 105 (604)
T KOG3564|consen 98 TQIQLIKD 105 (604)
T ss_pred HHHHHHHH
Confidence 55555543
No 112
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=24.66 E-value=32 Score=34.27 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=10.6
Q ss_pred cccccccccCcce
Q 022683 242 LACKRCNSRNSCV 254 (293)
Q Consensus 242 ~~C~iC~~~~~~v 254 (293)
-+|.+|.++.+..
T Consensus 16 ElCPVCGDkVSGY 28 (475)
T KOG4218|consen 16 ELCPVCGDKVSGY 28 (475)
T ss_pred cccccccCccccc
Confidence 4799999998764
No 113
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=23.42 E-value=36 Score=27.68 Aligned_cols=34 Identities=26% Similarity=0.660 Sum_probs=26.5
Q ss_pred cccccccccCcceEEeCCCCcccchhhHhcC--CCCCcccc
Q 022683 242 LACKRCNSRNSCVLLLPCRHLCSCKQCEAFL--VSCPVCNS 280 (293)
Q Consensus 242 ~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l--~~CPvCr~ 280 (293)
..|+||-+..+ ||.-+-+|.+|.-.- +.|.+|..
T Consensus 28 gkC~ICDS~VR-----P~tlVRiC~eC~~Gs~q~~ciic~~ 63 (110)
T KOG1705|consen 28 GKCVICDSYVR-----PCTLVRICDECNYGSYQGRCVICGG 63 (110)
T ss_pred Ccccccccccc-----cceeeeeehhcCCccccCceEEecC
Confidence 46888876544 888888999998653 78999976
No 114
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.41 E-value=28 Score=24.56 Aligned_cols=10 Identities=30% Similarity=0.933 Sum_probs=3.8
Q ss_pred CCCccccccc
Q 022683 274 SCPVCNSAKV 283 (293)
Q Consensus 274 ~CPvCr~~i~ 283 (293)
.||+|..+++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 5777766554
No 115
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=23.26 E-value=32 Score=33.34 Aligned_cols=42 Identities=24% Similarity=0.533 Sum_probs=29.2
Q ss_pred ccccccccccCcceEEeCC----CC-cccchhhHhcC----CCCCcccccc
Q 022683 241 KLACKRCNSRNSCVLLLPC----RH-LCSCKQCEAFL----VSCPVCNSAK 282 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvllPC----~H-l~lC~~C~~~l----~~CPvCr~~i 282 (293)
...|.+|.+.+..-++..- |+ ...|.-|...- .+||.|....
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~ 234 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESK 234 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCC
Confidence 4589999999865444332 22 23788888754 5999999864
No 116
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.82 E-value=3e+02 Score=25.93 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH------HHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCHHHHHH-HhhhhhhhH
Q 022683 103 LHTQLELQRQELE------CILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQ-ATRRAMELE 170 (293)
Q Consensus 103 l~~~l~~q~~EiD------~~i~~q~erlr~~l~e~r~rh~r~ll~avE~~~~~~LrqK~eELa~-Ag~~y~ele 170 (293)
+-.++.--+.|+| +.++.....++..|-++|. +++++.|.+.-+ +|+..++.+ |++|+.-||
T Consensus 91 ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~----~~~Ka~e~~~kR--kQdsa~~~e~a~wy~dyLG 159 (246)
T KOG4657|consen 91 IEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQ----ALSKAKENAGKR--KQDSADIHEAASWYNDYLG 159 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHH--HhhhhccHHHHHHHHHhcC
No 117
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=22.54 E-value=3.3e+02 Score=26.24 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHHHHH--HHHHHHc------------HHHHHHHHHHHHHH
Q 022683 99 LPQSLHTQLELQRQEL--ECILHIQ------------SERLRSALLEQRKQ 135 (293)
Q Consensus 99 ~~~~l~~~l~~q~~Ei--D~~i~~q------------~erlr~~l~e~r~r 135 (293)
++|.+...+..|..|+ |.+.+.+ .|+|.+.|+|.+.|
T Consensus 156 ~aDgv~~FihHQivElARDCL~KS~~~lITs~YF~ElsEnLekLl~ea~er 206 (282)
T PF08926_consen 156 LADGVLRFIHHQIVELARDCLQKSREGLITSRYFYELSENLEKLLQEAHER 206 (282)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcccC
Confidence 5778888888888888 7777765 45555555555443
No 118
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.49 E-value=1e+03 Score=25.82 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=17.5
Q ss_pred HHHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHh
Q 022683 170 EACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKE 206 (293)
Q Consensus 170 eerLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~ 206 (293)
+|+++.|+.|.+.-+..-+.++.-.-.|...|.-+..
T Consensus 565 ee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 565 EEQIRELESELQELRKYEKESEKDTEVLMSALSAMQD 601 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3455555555533333213344444556665655543
No 119
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=22.49 E-value=3e+02 Score=19.77 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHH
Q 022683 105 TQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVE 145 (293)
Q Consensus 105 ~~l~~q~~EiD~~i~~q~erlr~~l~e~r~rh~r~ll~avE 145 (293)
.+|++.-.-+|.-+-.+.|.||...+.+|+ -++.|+|
T Consensus 11 ~eL~~rl~~LD~~ME~Eieelr~RY~~KRq----PIldAie 47 (49)
T PF11629_consen 11 EELQQRLASLDPEMEQEIEELRQRYQAKRQ----PILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhc----cHHHHHh
Confidence 467777778888888888888888888775 3666665
No 120
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=22.44 E-value=2.4e+02 Score=26.81 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 022683 100 PQSLHTQLELQRQELECIL 118 (293)
Q Consensus 100 ~~~l~~~l~~q~~EiD~~i 118 (293)
++.+..+|++.-.|+|.+.
T Consensus 159 Gd~l~~eLqkr~~~v~~l~ 177 (289)
T COG4985 159 GDPLERELQKRLLEVETLR 177 (289)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 5778888988888877543
No 121
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=22.42 E-value=44 Score=29.63 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=26.3
Q ss_pred hccccccccccCcceEEeCCCCcccc----hhhHhc------CCCCCccccccc
Q 022683 240 RKLACKRCNSRNSCVLLLPCRHLCSC----KQCEAF------LVSCPVCNSAKV 283 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllPC~Hl~lC----~~C~~~------l~~CPvCr~~i~ 283 (293)
..+.|.||++.... ..-||+-...- .+|-.. -..|++|+.+..
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 35689999998753 34576522111 134332 279999998764
No 122
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=22.31 E-value=45 Score=24.43 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=13.4
Q ss_pred CCCCCcccccccceEEE
Q 022683 272 LVSCPVCNSAKVASMEV 288 (293)
Q Consensus 272 l~~CPvCr~~i~~~v~v 288 (293)
+.+|.+|..+|.....|
T Consensus 1 m~~CvVCKqpi~~a~~v 17 (54)
T PF10886_consen 1 MEICVVCKQPIDDALVV 17 (54)
T ss_pred CCeeeeeCCccCcceEE
Confidence 36899999999987444
No 123
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=22.23 E-value=31 Score=20.62 Aligned_cols=17 Identities=35% Similarity=0.974 Sum_probs=9.1
Q ss_pred chhhHhcC----CCCCccccc
Q 022683 265 CKQCEAFL----VSCPVCNSA 281 (293)
Q Consensus 265 C~~C~~~l----~~CPvCr~~ 281 (293)
|..|...+ ..||.|..+
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 44454443 466666654
No 124
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=22.17 E-value=4.2e+02 Score=21.91 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHH
Q 022683 101 QSLHTQLELQRQELECILHIQSERLRSALLEQRKQ 135 (293)
Q Consensus 101 ~~l~~~l~~q~~EiD~~i~~q~erlr~~l~e~r~r 135 (293)
+.+.++|+.--++++.+++--...--...++.|.|
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r 45 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSK 45 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Confidence 67888888888999999988777766667766643
No 125
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=21.80 E-value=3.4e+02 Score=22.36 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=39.6
Q ss_pred HHHcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHhhcCHHHHHHHhhhhhhhHHHHhhcccc
Q 022683 118 LHIQSERLRSALLEQRKQQL--GAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEME 179 (293)
Q Consensus 118 i~~q~erlr~~l~e~r~rh~--r~ll~avE~~~~~~LrqK~eELa~Ag~~y~eleerLr~w~~E 179 (293)
||.|+.-|+.++-+-+.+-. +.-|..-| ..||..+.|+..-+|+|.-|..|+..+-.|
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke----~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKE----QALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888776654432 22233333 458888899999999999999887655443
No 126
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=21.50 E-value=66 Score=33.34 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=25.9
Q ss_pred HHcHHHHHHHHHHHH---HHHHHHHHHHHHHHHH--hHhh
Q 022683 119 HIQSERLRSALLEQR---KQQLGAVLKSVESKAM--NLMR 153 (293)
Q Consensus 119 ~~q~erlr~~l~e~r---~rh~r~ll~avE~~~~--~~Lr 153 (293)
.-++||+.-+++.-| ||+.| |+.|+|++.. +|+.
T Consensus 319 ~~hNer~yeE~E~ERRvrKRraR-Lv~A~EeAFtHikr~~ 357 (505)
T PF06638_consen 319 SSHNERYYEEAEYERRVRKRRAR-LVVAVEEAFTHIKRLQ 357 (505)
T ss_pred CCcchhhhhhHHhhhhhccccee-eeehHHHHHHHHHhhc
Confidence 467788777777554 89998 9999999885 4454
No 127
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=21.27 E-value=48 Score=24.14 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=12.7
Q ss_pred CCCCcccccccceEEE
Q 022683 273 VSCPVCNSAKVASMEV 288 (293)
Q Consensus 273 ~~CPvCr~~i~~~v~v 288 (293)
+.|++|..+|.+.+-|
T Consensus 2 ~iCvvCK~Pi~~al~v 17 (53)
T PHA02610 2 KICVVCKQPIEKALVV 17 (53)
T ss_pred ceeeeeCCchhhceEE
Confidence 5799999999876654
No 128
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.95 E-value=39 Score=32.57 Aligned_cols=45 Identities=20% Similarity=0.432 Sum_probs=30.2
Q ss_pred hhccccccccccCc----------ceEEeCCCCcccchhhHh------cCCCCCcccccccc
Q 022683 239 RRKLACKRCNSRNS----------CVLLLPCRHLCSCKQCEA------FLVSCPVCNSAKVA 284 (293)
Q Consensus 239 ~~~~~C~iC~~~~~----------~vvllPC~Hl~lC~~C~~------~l~~CPvCr~~i~~ 284 (293)
.++..|.+|..+-- ++.-+.|+|. .=..|-. +.++||.|...++.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 34668999986522 3345899998 4444443 34899999887653
No 129
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.91 E-value=5.4e+02 Score=26.19 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=40.3
Q ss_pred HHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhhhh
Q 022683 116 CILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAM 167 (293)
Q Consensus 116 ~~i~~q~erlr~~l~e~r~rh~r~ll~avE~~~~~~LrqK~eELa~Ag~~y~ 167 (293)
.|--.|.|||--.|.|..++|... ++-+-+++++.+|..+.+..++.-+..
T Consensus 126 ~~~~aq~erlvgeiaenerqhave-maelsekia~emr~lede~~r~~mrtk 176 (637)
T KOG4421|consen 126 IFEEAQKERLVGEIAENERQHAVE-MAELSEKIADEMRDLEDETERIAMRTK 176 (637)
T ss_pred HHHHHHhhHHHHHHHhhhHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455679999999999998888873 455667888999999999888876543
No 130
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=20.77 E-value=3.5e+02 Score=19.83 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=27.5
Q ss_pred HHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhh
Q 022683 113 ELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATR 164 (293)
Q Consensus 113 EiD~~i~~q~erlr~~l~e~r~rh~r~ll~avE~~~~~~LrqK~eELa~Ag~ 164 (293)
-||.||+. ||..|.++.+ .++..+-.-..+.|+++-.+|++..+
T Consensus 8 ~~d~yI~~----Lk~kLd~Kk~----Eil~~ln~EY~kiLk~r~~~lEevKr 51 (56)
T PF08112_consen 8 TIDKYISI----LKSKLDEKKS----EILSNLNMEYEKILKQRRKELEEVKR 51 (56)
T ss_pred hHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667664 6677766643 35555555566677777777776654
No 131
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.45 E-value=6e+02 Score=23.27 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 022683 109 LQRQELECILHIQSERLRSALL-EQRKQQLGAVLKSVESKAM 149 (293)
Q Consensus 109 ~q~~EiD~~i~~q~erlr~~l~-e~r~rh~r~ll~avE~~~~ 149 (293)
..|.|-||+=.+++.-=+..+- +++.| .--.-.++|+..+
T Consensus 88 lRRrEq~Rl~~md~~a~Ke~~daefq~r-~ek~~kaaEeKTa 128 (213)
T KOG4055|consen 88 LRRREQDRLDYMDADANKELLDAEFQIR-LEKNQKAAEEKTA 128 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3456888776666544333332 22222 2223355555544
No 132
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.38 E-value=6e+02 Score=26.35 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHH
Q 022683 103 LHTQLELQRQELECILHIQSERLRSALLEQRK 134 (293)
Q Consensus 103 l~~~l~~q~~EiD~~i~~q~erlr~~l~e~r~ 134 (293)
|..++.+-+.|+..+++ ++++|+..-+..|+
T Consensus 64 lva~~k~~r~~~~~l~~-~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 64 LVAEVKELRKRLAKLIS-ENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 55677777778876654 44555555554443
Done!