Query 022683
Match_columns 293
No_of_seqs 246 out of 1169
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:27:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6p_A Baculoviral IAP repeat- 99.8 6.2E-21 2.1E-25 182.2 5.1 54 238-291 292-345 (345)
2 2yho_A E3 ubiquitin-protein li 99.5 5.7E-14 2E-18 107.1 5.6 60 233-292 10-69 (79)
3 2ea5_A Cell growth regulator w 99.4 3.5E-14 1.2E-18 105.5 3.6 52 240-291 14-65 (68)
4 4ic3_A E3 ubiquitin-protein li 99.4 1.2E-13 4.2E-18 103.4 5.4 59 233-291 16-74 (74)
5 2ecg_A Baculoviral IAP repeat- 99.4 1.1E-13 3.8E-18 103.7 4.1 60 232-291 16-75 (75)
6 2vje_B MDM4 protein; proto-onc 99.4 4.6E-14 1.6E-18 103.0 1.8 52 240-291 6-63 (63)
7 2vje_A E3 ubiquitin-protein li 99.4 1E-13 3.4E-18 101.5 1.5 52 240-291 7-64 (64)
8 1jd5_A DIAP1, apoptosis 1 inhi 98.9 1.1E-10 3.6E-15 96.9 0.1 61 147-212 35-104 (124)
9 2i3h_A Baculoviral IAP repeat- 98.9 1.3E-10 4.4E-15 97.4 0.2 61 147-212 57-126 (133)
10 3d9t_A Baculoviral IAP repeat- 98.9 1.3E-10 4.6E-15 92.3 0.2 60 147-211 23-91 (97)
11 2vm5_A Baculoviral IAP repeat- 98.9 2.1E-10 7.2E-15 92.6 -0.1 59 147-210 30-98 (106)
12 3hl5_A Baculoviral IAP repeat- 98.8 4.3E-10 1.5E-14 89.1 0.7 53 154-211 28-89 (95)
13 3mup_A Baculoviral IAP repeat- 98.8 4.3E-10 1.5E-14 93.0 0.1 59 148-211 30-97 (122)
14 1g73_C Inhibitors of apoptosis 98.8 9.1E-10 3.1E-14 90.9 1.4 54 154-212 42-104 (121)
15 3m1d_A Baculoviral IAP repeat- 98.6 4.2E-09 1.4E-13 81.8 0.2 49 147-195 21-78 (85)
16 1i4o_C X-linked IAP, baculovir 98.6 3.2E-09 1.1E-13 89.8 -0.8 50 147-196 53-111 (141)
17 2poi_A Baculoviral IAP repeat- 98.6 3.4E-09 1.2E-13 83.8 -2.0 49 147-195 30-87 (94)
18 2qra_D XIAP, baculoviral IAP r 98.5 5.6E-09 1.9E-13 85.0 -2.0 49 147-195 47-104 (111)
19 1se0_A Apoptosis 1 inhibitor; 98.5 1.1E-08 3.7E-13 83.8 -1.1 47 148-195 25-80 (116)
20 1chc_A Equine herpes virus-1 r 98.4 1E-07 3.5E-12 68.8 2.4 51 241-292 5-60 (68)
21 2qfa_A Baculoviral IAP repeat- 98.4 3.5E-08 1.2E-12 83.3 -0.9 48 148-195 25-86 (142)
22 3siq_A Apoptosis 1 inhibitor; 98.3 4.1E-08 1.4E-12 82.5 -1.1 47 148-195 47-102 (136)
23 2ecn_A Ring finger protein 141 98.3 6.7E-08 2.3E-12 70.3 0.1 50 239-290 13-66 (70)
24 2y1n_A E3 ubiquitin-protein li 98.3 4.2E-07 1.4E-11 88.0 4.7 52 241-293 332-388 (389)
25 4ayc_A E3 ubiquitin-protein li 98.3 4.4E-07 1.5E-11 74.9 3.6 47 240-287 52-102 (138)
26 2d8t_A Dactylidin, ring finger 98.3 4.4E-07 1.5E-11 66.4 3.1 44 240-284 14-61 (71)
27 2ysl_A Tripartite motif-contai 98.2 5.2E-07 1.8E-11 65.8 1.9 46 238-284 17-69 (73)
28 2xeu_A Ring finger protein 4; 98.2 5E-07 1.7E-11 63.9 1.8 49 241-290 3-64 (64)
29 2ecm_A Ring finger and CHY zin 98.1 1.1E-06 3.8E-11 60.5 2.6 43 241-284 5-55 (55)
30 2csy_A Zinc finger protein 183 98.1 1.1E-06 3.9E-11 65.6 1.9 46 240-286 14-63 (81)
31 3ng2_A RNF4, snurf, ring finge 98.0 7.6E-07 2.6E-11 64.4 0.7 44 240-284 9-63 (71)
32 2kiz_A E3 ubiquitin-protein li 98.0 1.2E-06 4.3E-11 63.3 1.2 46 240-286 13-65 (69)
33 2ea6_A Ring finger protein 4; 98.0 1.5E-06 5E-11 62.3 1.4 45 239-284 13-68 (69)
34 2ct2_A Tripartite motif protei 98.0 1.6E-06 5.4E-11 65.2 1.6 45 239-284 13-68 (88)
35 1bor_A Transcription factor PM 98.0 1.3E-06 4.4E-11 61.6 0.8 44 240-284 5-49 (56)
36 2ecw_A Tripartite motif-contai 98.0 2.6E-06 8.9E-11 63.2 2.5 45 239-284 17-71 (85)
37 2egp_A Tripartite motif-contai 98.0 1.5E-06 5.1E-11 64.1 1.1 45 239-284 10-65 (79)
38 2djb_A Polycomb group ring fin 98.0 1.8E-06 6.3E-11 63.2 1.5 47 238-285 12-63 (72)
39 1iym_A EL5; ring-H2 finger, ub 98.0 3.7E-06 1.3E-10 58.0 3.0 42 241-283 5-54 (55)
40 2ecv_A Tripartite motif-contai 98.0 2E-06 6.9E-11 63.8 1.7 46 238-284 16-71 (85)
41 2ect_A Ring finger protein 126 97.9 2.8E-06 9.5E-11 62.8 1.7 46 239-285 13-65 (78)
42 3fl2_A E3 ubiquitin-protein li 97.9 5.3E-06 1.8E-10 66.9 3.1 48 236-284 47-99 (124)
43 1g25_A CDK-activating kinase a 97.9 6E-06 2.1E-10 59.1 2.9 43 241-284 3-55 (65)
44 2y43_A E3 ubiquitin-protein li 97.9 9.2E-06 3.1E-10 62.9 3.7 48 236-284 17-69 (99)
45 1x4j_A Ring finger protein 38; 97.8 5.1E-06 1.8E-10 61.1 2.0 44 240-284 22-72 (75)
46 1jm7_A BRCA1, breast cancer ty 97.8 6.9E-06 2.3E-10 64.4 2.8 47 237-284 17-70 (112)
47 2ep4_A Ring finger protein 24; 97.8 3.9E-06 1.3E-10 61.4 1.0 48 240-288 14-68 (74)
48 3lrq_A E3 ubiquitin-protein li 97.8 9E-06 3.1E-10 63.5 3.1 49 235-284 16-70 (100)
49 2ecy_A TNF receptor-associated 97.8 4E-06 1.4E-10 60.2 0.9 45 239-284 13-62 (66)
50 2l0b_A E3 ubiquitin-protein li 97.8 5.3E-06 1.8E-10 63.8 1.3 44 240-284 39-89 (91)
51 2ckl_A Polycomb group ring fin 97.8 1.4E-05 4.7E-10 62.9 3.7 47 237-284 11-62 (108)
52 1z6u_A NP95-like ring finger p 97.8 9.9E-06 3.4E-10 68.2 3.0 47 238-285 75-126 (150)
53 1e4u_A Transcriptional repress 97.8 3.2E-06 1.1E-10 64.0 -0.3 49 239-288 9-66 (78)
54 3l11_A E3 ubiquitin-protein li 97.7 1.1E-05 3.7E-10 64.1 2.6 44 240-284 14-62 (115)
55 2yur_A Retinoblastoma-binding 97.7 1E-05 3.4E-10 59.7 2.2 45 238-283 12-63 (74)
56 1jm7_B BARD1, BRCA1-associated 97.7 2.2E-05 7.6E-10 62.7 3.9 48 235-283 16-66 (117)
57 2ckl_B Ubiquitin ligase protei 97.7 1.5E-05 5.1E-10 67.2 2.3 45 238-283 51-101 (165)
58 3ztg_A E3 ubiquitin-protein li 97.6 1.6E-05 5.3E-10 60.5 1.4 44 238-282 10-60 (92)
59 2ecj_A Tripartite motif-contai 97.6 1.3E-05 4.5E-10 55.5 0.7 39 239-278 13-58 (58)
60 1t1h_A Gspef-atpub14, armadill 97.6 2.4E-05 8.1E-10 57.7 1.8 45 239-284 6-55 (78)
61 1rmd_A RAG1; V(D)J recombinati 97.5 3.6E-05 1.2E-09 61.1 2.8 46 238-284 20-70 (116)
62 2ysj_A Tripartite motif-contai 97.5 2.6E-05 9E-10 55.3 1.3 40 238-278 17-63 (63)
63 3hct_A TNF receptor-associated 97.5 3.8E-05 1.3E-09 61.5 2.4 46 238-284 15-65 (118)
64 4ap4_A E3 ubiquitin ligase RNF 97.4 5E-05 1.7E-09 60.5 2.1 44 240-284 6-60 (133)
65 4ap4_A E3 ubiquitin ligase RNF 97.3 8.1E-05 2.8E-09 59.3 2.1 50 240-290 71-133 (133)
66 1v87_A Deltex protein 2; ring- 97.3 6.1E-05 2.1E-09 59.4 1.0 42 242-284 26-94 (114)
67 2ecl_A Ring-box protein 2; RNF 97.1 0.00016 5.6E-09 54.3 2.2 30 254-284 43-76 (81)
68 3knv_A TNF receptor-associated 97.0 0.00011 3.8E-09 61.2 -0.0 45 237-282 27-76 (141)
69 2f42_A STIP1 homology and U-bo 96.9 0.00093 3.2E-08 58.2 5.4 45 239-284 104-153 (179)
70 3hcs_A TNF receptor-associated 96.9 0.00039 1.3E-08 58.7 2.4 46 238-284 15-65 (170)
71 2kr4_A Ubiquitin conjugation f 96.6 0.00048 1.6E-08 52.4 0.8 46 238-284 11-60 (85)
72 3vk6_A E3 ubiquitin-protein li 96.6 0.0021 7E-08 51.3 4.4 45 244-289 4-54 (101)
73 2c2l_A CHIP, carboxy terminus 96.5 0.001 3.5E-08 59.1 2.6 44 240-284 207-255 (281)
74 3dpl_R Ring-box protein 1; ubi 96.5 0.0013 4.5E-08 52.4 2.6 30 253-283 67-100 (106)
75 2kre_A Ubiquitin conjugation f 96.2 0.002 7E-08 50.5 2.4 46 238-284 26-75 (100)
76 1wgm_A Ubiquitin conjugation f 96.2 0.0023 7.9E-08 50.0 2.5 46 238-284 19-69 (98)
77 4a0k_B E3 ubiquitin-protein li 95.6 0.0022 7.4E-08 52.2 0.0 29 253-282 78-110 (117)
78 2d8s_A Cellular modulator of i 95.3 0.0078 2.7E-07 45.5 2.5 43 241-284 15-70 (80)
79 1wim_A KIAA0161 protein; ring 94.6 0.0074 2.5E-07 46.0 0.5 40 241-281 5-61 (94)
80 2yu4_A E3 SUMO-protein ligase 94.3 0.02 6.7E-07 44.0 2.3 41 240-281 6-59 (94)
81 3htk_C E3 SUMO-protein ligase 90.3 0.091 3.1E-06 48.4 1.6 45 238-283 178-231 (267)
82 1vyx_A ORF K3, K3RING; zinc-bi 89.9 0.082 2.8E-06 37.6 0.8 44 240-283 5-58 (60)
83 2bay_A PRE-mRNA splicing facto 84.1 0.53 1.8E-05 33.3 2.3 42 242-284 4-50 (61)
84 2ko5_A Ring finger protein Z; 77.7 0.79 2.7E-05 36.1 1.4 50 239-290 26-79 (99)
85 2jun_A Midline-1; B-BOX, TRIM, 55.1 4.2 0.00014 30.6 1.3 30 241-271 3-35 (101)
86 3vem_A Helicase protein MOM1; 54.9 53 0.0018 26.4 7.7 27 98-124 32-58 (115)
87 3k1l_B Fancl; UBC, ring, RWD, 53.2 1.6 5.5E-05 41.9 -1.7 47 241-288 308-377 (381)
88 1weo_A Cellulose synthase, cat 42.6 12 0.0004 29.1 2.0 43 241-283 16-69 (93)
89 2v71_A Nuclear distribution pr 41.0 1.8E+02 0.006 25.2 10.5 65 119-195 23-87 (189)
90 3iv1_A Tumor susceptibility ge 37.9 1.1E+02 0.0037 22.9 6.6 59 98-162 7-75 (78)
91 2ct0_A Non-SMC element 1 homol 37.7 26 0.0009 25.6 3.2 45 241-286 15-66 (74)
92 3pwf_A Rubrerythrin; non heme 35.0 14 0.00049 31.2 1.6 16 273-288 154-169 (170)
93 1e8j_A Rubredoxin; iron-sulfur 32.6 17 0.00058 25.0 1.4 14 274-287 38-51 (52)
94 1yk4_A Rubredoxin, RD; electro 32.4 19 0.00066 24.7 1.6 15 274-288 37-51 (52)
95 3mq9_A Bone marrow stromal ant 31.7 1.6E+02 0.0055 27.6 8.5 40 113-152 397-442 (471)
96 3uo3_A J-type CO-chaperone JAC 31.5 2.1E+02 0.0071 24.0 8.4 18 163-180 160-177 (181)
97 4rxn_A Rubredoxin; electron tr 31.2 17 0.00059 25.4 1.2 14 274-287 38-51 (54)
98 2v3b_B Rubredoxin 2, rubredoxi 31.1 19 0.00066 25.0 1.4 15 274-288 38-52 (55)
99 2kn9_A Rubredoxin; metalloprot 28.9 25 0.00087 26.5 1.9 16 274-289 62-77 (81)
100 2fiy_A Protein FDHE homolog; F 27.7 22 0.00077 32.9 1.7 43 240-282 181-232 (309)
101 6rxn_A Rubredoxin; electron tr 27.6 22 0.00075 24.0 1.2 14 274-287 32-45 (46)
102 1deq_A Fibrinogen (alpha chain 26.4 4.4E+02 0.015 25.3 10.6 30 108-137 55-84 (390)
103 1lko_A Rubrerythrin all-iron(I 25.9 17 0.00058 31.1 0.4 15 273-287 172-186 (191)
104 1dx8_A Rubredoxin; electron tr 25.5 24 0.00083 25.8 1.2 15 274-288 42-56 (70)
105 3oja_B Anopheles plasmodium-re 23.7 4.8E+02 0.017 24.9 10.8 35 169-203 535-569 (597)
106 3ghg_A Fibrinogen alpha chain; 22.5 2.1E+02 0.007 28.7 7.4 49 99-153 111-159 (562)
107 2q6q_A Spindle POLE BODY compo 22.3 1.4E+02 0.005 21.9 4.8 30 102-132 7-36 (74)
108 4etp_A Kinesin-like protein KA 20.1 97 0.0033 29.4 4.5 57 151-207 4-60 (403)
No 1
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.81 E-value=6.2e-21 Score=182.21 Aligned_cols=54 Identities=30% Similarity=0.774 Sum_probs=49.3
Q ss_pred hhhccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEccc
Q 022683 238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS 291 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS 291 (293)
..+...|.||++...+.+++||||.|+|..|...+..||+||.+|+..++||+|
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 345678999999999999999999999999999999999999999999999987
No 2
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.45 E-value=5.7e-14 Score=107.10 Aligned_cols=60 Identities=28% Similarity=0.625 Sum_probs=54.8
Q ss_pred HHHHhhhhccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEcccC
Q 022683 233 QELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGSD 292 (293)
Q Consensus 233 ~e~~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS~ 292 (293)
++.+...+...|+||+++.++++|+||||.++|..|...+..||+||.+|...+++|++.
T Consensus 10 ~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p~ 69 (79)
T 2yho_A 10 EKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLPT 69 (79)
T ss_dssp HHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCTT
T ss_pred HHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeCc
Confidence 444566777899999999999999999999999999999999999999999999999863
No 3
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.5e-14 Score=105.46 Aligned_cols=52 Identities=31% Similarity=0.793 Sum_probs=49.4
Q ss_pred hccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEccc
Q 022683 240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS 291 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS 291 (293)
+...|+||+++.++++|+||||+++|..|+..+..||+||.+|...++||.+
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCSS
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeecC
Confidence 3568999999999999999999999999999999999999999999999975
No 4
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.42 E-value=1.2e-13 Score=103.44 Aligned_cols=59 Identities=31% Similarity=0.750 Sum_probs=53.7
Q ss_pred HHHHhhhhccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEccc
Q 022683 233 QELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS 291 (293)
Q Consensus 233 ~e~~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS 291 (293)
++.+...+...|.||++...+.+++||||.++|..|...+..||+||.+|...++||+|
T Consensus 16 ~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 16 EQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred HHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 34456677889999999999999999999999999999999999999999999999997
No 5
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=103.70 Aligned_cols=60 Identities=33% Similarity=0.785 Sum_probs=54.5
Q ss_pred HHHHHhhhhccccccccccCcceEEeCCCCcccchhhHhcCCCCCcccccccceEEEccc
Q 022683 232 EQELKEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFLVSCPVCNSAKVASMEVFGS 291 (293)
Q Consensus 232 e~e~~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l~~CPvCr~~i~~~v~v~lS 291 (293)
++..+...+...|.||++...+.+++||||.++|..|...+..||+||.+|...++||+|
T Consensus 16 ~~~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 16 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred HHHHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 344455667789999999999999999999999999999999999999999999999987
No 6
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.40 E-value=4.6e-14 Score=103.03 Aligned_cols=52 Identities=27% Similarity=0.550 Sum_probs=47.7
Q ss_pred hccccccccccCcceEEe--CCCCcccchhhHhcCC----CCCcccccccceEEEccc
Q 022683 240 RKLACKRCNSRNSCVLLL--PCRHLCSCKQCEAFLV----SCPVCNSAKVASMEVFGS 291 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvll--PC~Hl~lC~~C~~~l~----~CPvCr~~i~~~v~v~lS 291 (293)
....|+||++++++.+++ ||||+++|..|+..+. .||+||.+|...++||+|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 356899999999988777 9999999999999885 999999999999999986
No 7
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.36 E-value=1e-13 Score=101.53 Aligned_cols=52 Identities=23% Similarity=0.458 Sum_probs=47.7
Q ss_pred hccccccccccCcceEEe--CCCCcccchhhHhcCC----CCCcccccccceEEEccc
Q 022683 240 RKLACKRCNSRNSCVLLL--PCRHLCSCKQCEAFLV----SCPVCNSAKVASMEVFGS 291 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvll--PC~Hl~lC~~C~~~l~----~CPvCr~~i~~~v~v~lS 291 (293)
+...|+||+++.++++|+ ||||+++|..|+..+. .||+||.+|...+++|+|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 456899999999999998 9999999999998873 699999999999999986
No 8
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=98.93 E-value=1.1e-10 Score=96.87 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=53.2
Q ss_pred HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhhc
Q 022683 147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVS 212 (293)
Q Consensus 147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~~ 212 (293)
.|+..++.++++||+|||||++.+ ..|++|+++|+||.+|+||+|.|.| |..+|+..|+..
T Consensus 35 ~WP~~~~~~p~~LA~AGFyYtg~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~F-----v~~~kg~~fv~~ 104 (124)
T 1jd5_A 35 AWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRF-----VKLMKGQLYIDT 104 (124)
T ss_dssp GCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHH-----HHHHHCHHHHHH
T ss_pred hCCCCccCCHHHHHHcCCCCcCCCCEEEecCCCCEecCCCCCCCHHHHHHHHCcCCce-----eecccchHHHHH
Confidence 477777889999999999999954 4599999999999999999999999 677888877653
No 9
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*
Probab=98.92 E-value=1.3e-10 Score=97.39 Aligned_cols=61 Identities=13% Similarity=-0.004 Sum_probs=53.2
Q ss_pred HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhhc
Q 022683 147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVS 212 (293)
Q Consensus 147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~~ 212 (293)
.|+...+..+++||+|||||++.. ..|++|+++|+||.+|+||+|.|.| |..+|+.+|+..
T Consensus 57 ~WP~~~~~~pe~LA~AGFYYtg~~D~V~Cf~C~~~L~~We~~DDP~~EH~r~~P~C~F-----v~~~Kg~~fv~~ 126 (133)
T 2i3h_A 57 DWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQF-----LLRSKGQEYINN 126 (133)
T ss_dssp TCSCTTTSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHH-----HHHHHCHHHHHH
T ss_pred cCCCCcCCCHHHHHHcCCCCcCCCCEEEecccCCEeCCCCCCCCHHHHHHHHCcCCce-----ehhcccHHHHHH
Confidence 477667889999999999999954 4599999999999999999999999 667888888753
No 10
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=98.91 E-value=1.3e-10 Score=92.26 Aligned_cols=60 Identities=17% Similarity=0.058 Sum_probs=52.1
Q ss_pred HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhh
Q 022683 147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLV 211 (293)
Q Consensus 147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~ 211 (293)
.|+...+..+++||+|||||++.+ ..|++|+++|+||.+|++|+|.|.+ |..+|+++|+.
T Consensus 23 ~Wp~~~~~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~Ddp~~eH~r~~p~C~f-----~~~~kg~~~v~ 91 (97)
T 3d9t_A 23 YWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEF-----LIRMKGQEFVD 91 (97)
T ss_dssp GCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTBHH-----HHHHHCHHHHH
T ss_pred cCCCcccCCHHHHHHcCCCCcCCCCEEEecCcCCEecCCCCCCCHHHHHHHhCccChh-----hHhhccHHHHH
Confidence 366666789999999999999854 4589999999999999999999999 77788888865
No 11
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}
Probab=98.87 E-value=2.1e-10 Score=92.62 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=50.0
Q ss_pred HHHhHhh-cCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhh
Q 022683 147 KAMNLMR-QKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVL 210 (293)
Q Consensus 147 ~~~~~Lr-qK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~ 210 (293)
.|+...+ ..+++||+|||||++.+ ..|++|+++|+||.+|++|+|.|.| |...|+..++
T Consensus 30 ~WP~~~~~~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~C~F-----v~~~Kg~~~i 98 (106)
T 2vm5_A 30 NWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWKEHAKWFPKCEF-----LRSKKSSEEI 98 (106)
T ss_dssp GCCGGGTTSCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHH-----HHHHHCCTTS
T ss_pred cCCCCcccCCHHHHHHcCCCCcCCCCEEEccccCCEecCCCCCCCHHHHHHHHCcCCcc-----hhhccCHHHH
Confidence 3665555 78999999999999854 4599999999999999999999999 6677876654
No 12
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=98.84 E-value=4.3e-10 Score=89.08 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=47.8
Q ss_pred cCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhh
Q 022683 154 QKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLV 211 (293)
Q Consensus 154 qK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~ 211 (293)
..+++||+|||||++.+ ..|++|+++|+||.+|+||+|.|.| |..+||++|+.
T Consensus 28 ~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~DdP~~eH~r~~p~C~f-----~~~~kg~~fv~ 89 (95)
T 3hl5_A 28 VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKY-----LLEQKGQEYIN 89 (95)
T ss_dssp SCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHH-----HHHHTCHHHHH
T ss_pred CCHHHHHhCCCeEcCCCCeEEecCCCCCccCcCCCCCHHHHHHHHCcCCcc-----hHhhccHHHHH
Confidence 78999999999999844 4589999999999999999999999 77888988875
No 13
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*
Probab=98.82 E-value=4.3e-10 Score=92.99 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=51.6
Q ss_pred HHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhh
Q 022683 148 AMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLV 211 (293)
Q Consensus 148 ~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~ 211 (293)
|+......+++||+|||||++.+ ..|.+|+++|+||.+|+||+|.|.| |..+||++|+.
T Consensus 30 WP~~~~~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~F-----v~~~kg~~fi~ 97 (122)
T 3mup_A 30 WPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEF-----LIRMKGQEFVD 97 (122)
T ss_dssp CCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHH-----HHHHHCHHHHH
T ss_pred CCCcccCCHHHHHHCCCeEeCCCCeEEecCcCCEecCCCCCCCHHHHHHHHCcCCcc-----hhhcCcHHHHH
Confidence 66566789999999999999854 4589999999999999999999999 77888888875
No 14
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=98.80 E-value=9.1e-10 Score=90.89 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=47.1
Q ss_pred cCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhhhhhhc
Q 022683 154 QKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKERIVLVS 212 (293)
Q Consensus 154 qK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~~~~~~ 212 (293)
..+++||+|||||++.+ ..|++|+++|+||.+|+||+|.|.| |...|+.+|+..
T Consensus 42 ~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~P~C~F-----v~~~kg~~~v~~ 104 (121)
T 1g73_C 42 VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKY-----LLEQKGQEYINN 104 (121)
T ss_dssp SCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHH-----HHHHHHHHHHHH
T ss_pred CCHHHHHHcCCCCcCCCCEEEcCcCCCCcCCCCCCCCHHHHHHHHCcCCcc-----hhhccchhhhcc
Confidence 78999999999999844 4599999999999999999999999 666778777653
No 15
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=98.62 E-value=4.2e-09 Score=81.82 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=44.1
Q ss_pred HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683 147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM 195 (293)
Q Consensus 147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~ 195 (293)
.|+......+++||+|||||++.+ ..|..|+++|+||.+|++|+|.|.|
T Consensus 21 ~WP~~~~~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~F 78 (85)
T 3m1d_A 21 TFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYPSCSF 78 (85)
T ss_dssp GCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECSCCTTCCHHHHHHHHCTTCHH
T ss_pred cCCCCCcCCHHHHHHCCCeEeCCCCEEEeCCcCCEecCCCCCCCHHHHHHHHCccCcc
Confidence 366667899999999999999954 4589999999999999999999999
No 16
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Probab=98.61 E-value=3.2e-09 Score=89.76 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=44.8
Q ss_pred HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHHH
Q 022683 147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVMD 196 (293)
Q Consensus 147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~~ 196 (293)
.|+...+..+++||+|||||++.+ ..|++|+++|+||.+|+||+|.|.|.
T Consensus 53 ~WP~~~~~~p~~LA~AGFyY~g~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~Fv 111 (141)
T 1i4o_C 53 NWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV 111 (141)
T ss_pred cCCCCccCCHHHHHHcCCcCcCCCCEEEeccCCCEecCCCCCCCHHHHHHHHCcCCccc
Confidence 477777889999999999999954 55999999999999999999999993
No 17
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=98.56 E-value=3.4e-09 Score=83.83 Aligned_cols=49 Identities=8% Similarity=-0.074 Sum_probs=43.8
Q ss_pred HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683 147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM 195 (293)
Q Consensus 147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~ 195 (293)
.|+......+++||+|||||++.+ ..|++|+++|+||.+|++|+|.|.|
T Consensus 30 ~WP~~~~~~p~~LA~AGFyytg~~D~V~Cf~C~~~l~~We~~DdP~~eH~r~~P~C~F 87 (94)
T 2poi_A 30 NFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRF 87 (94)
T ss_dssp TCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCTT
T ss_pred cCCCCccCCHHHHHHcCCCCcCCCCEEEcccCCCEeCCCCCCCCHHHHHHHHCccCcc
Confidence 466667789999999999999954 4599999999999999999999998
No 18
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=98.51 E-value=5.6e-09 Score=85.01 Aligned_cols=49 Identities=8% Similarity=-0.074 Sum_probs=43.8
Q ss_pred HHHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683 147 KAMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM 195 (293)
Q Consensus 147 ~~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~ 195 (293)
.|+...+..+++||+|||||++.+ ..|++|+++|+||.+|+||+|.|.|
T Consensus 47 ~WP~~~~~~p~~LA~AGFyYtg~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~sP~C~F 104 (111)
T 2qra_D 47 NFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRF 104 (111)
T ss_dssp TCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCTT
T ss_pred cCCCCccCCHHHHHHcCCCCcCCCCEEEcccCCCEeCCCCCCCCHHHHHHHHCccCcc
Confidence 466667789999999999999954 4599999999999999999999998
No 19
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=98.48 E-value=1.1e-08 Score=83.83 Aligned_cols=47 Identities=11% Similarity=-0.102 Sum_probs=41.0
Q ss_pred HHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683 148 AMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM 195 (293)
Q Consensus 148 ~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~ 195 (293)
|+.. ...+++||+|||||++.+ ..|++|+++|+||.+|+||+|.|.|
T Consensus 25 WP~~-~~~~~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~C~F 80 (116)
T 1se0_A 25 WPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPL 80 (116)
T ss_dssp CCCT-TSCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCTT
T ss_pred CCCC-cCCHHHHHHcCCcCcCCCCEEEecCcCCEecCCCCCCCHHHHHHHHCccCcc
Confidence 4442 578999999999999854 4599999999999999999999999
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.39 E-value=1e-07 Score=68.81 Aligned_cols=51 Identities=27% Similarity=0.556 Sum_probs=43.2
Q ss_pred ccccccccccCcc-eEEeCCCCcccchhhHhc----CCCCCcccccccceEEEcccC
Q 022683 241 KLACKRCNSRNSC-VLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVASMEVFGSD 292 (293)
Q Consensus 241 ~~~C~iC~~~~~~-vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~~v~v~lS~ 292 (293)
...|.||++...+ ++++||+|. +|..|... -..||+||.++...++.+.++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~d 60 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTIESD 60 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCCCSC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhccccc
Confidence 4579999999887 689999999 99999865 378999999999888776643
No 21
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...
Probab=98.36 E-value=3.5e-08 Score=83.32 Aligned_cols=48 Identities=13% Similarity=-0.009 Sum_probs=41.4
Q ss_pred HHhHh--hcCHHHHHHHhhhhhhhH------------HHHhhccccchHHHHHHHHhHHhHH
Q 022683 148 AMNLM--RQKEEDLIQATRRAMELE------------ACLRKAEMESESWQRLARANEAMVM 195 (293)
Q Consensus 148 ~~~~L--rqK~eELa~Ag~~y~ele------------erLr~w~~E~~~Wq~hAr~neac~~ 195 (293)
|+... +.++++||+|||||++.+ ..|++|+++|+||.+|+||+|.|.|
T Consensus 25 WP~~~~~~~~p~~LA~AGFyy~g~~~~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~p~C~F 86 (142)
T 2qfa_A 25 WPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAF 86 (142)
T ss_dssp CSCCSSCSSCHHHHHHTTEEECCBTTBTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCGG
T ss_pred CCccCCcCCCHHHHHHcCCCcCCCCCCCCEEEcCCCCCEecccCCCCCHHHHHHHHCcCCcc
Confidence 55443 367999999999999853 4599999999999999999999999
No 22
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}
Probab=98.33 E-value=4.1e-08 Score=82.48 Aligned_cols=47 Identities=11% Similarity=-0.102 Sum_probs=41.0
Q ss_pred HHhHhhcCHHHHHHHhhhhhhhH---------HHHhhccccchHHHHHHHHhHHhHH
Q 022683 148 AMNLMRQKEEDLIQATRRAMELE---------ACLRKAEMESESWQRLARANEAMVM 195 (293)
Q Consensus 148 ~~~~LrqK~eELa~Ag~~y~ele---------erLr~w~~E~~~Wq~hAr~neac~~ 195 (293)
|+.. ...+++||+|||||++.+ ..|+.|+++|+||.+|+||+|.|.|
T Consensus 47 WP~~-~~~p~~LA~AGFYYtG~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~sP~C~F 102 (136)
T 3siq_A 47 WPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPL 102 (136)
T ss_dssp CCCT-TSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCTT
T ss_pred CCCC-cCCHHHHHHCCCeEcCCCCeEEEeccCCEecCCCCCCCHHHHHHHHCcCCcc
Confidence 5443 368999999999999954 4589999999999999999999999
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=6.7e-08 Score=70.27 Aligned_cols=50 Identities=28% Similarity=0.638 Sum_probs=43.0
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccceEEEcc
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASMEVFG 290 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v~l 290 (293)
.+...|.||++...+ +++||+|. +|..|.... ..||+||.++.....+|.
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 345689999999888 88999999 999999864 689999999998777665
No 24
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.29 E-value=4.2e-07 Score=88.02 Aligned_cols=52 Identities=27% Similarity=0.589 Sum_probs=46.7
Q ss_pred ccccccccccCcceEEeCCCCcccchhhHhc-----CCCCCcccccccceEEEcccCC
Q 022683 241 KLACKRCNSRNSCVLLLPCRHLCSCKQCEAF-----LVSCPVCNSAKVASMEVFGSDF 293 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i~~~v~v~lS~~ 293 (293)
...|.||++...+.+++||||.. |..|... ...||+||.++.....|.+.+|
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~pf 388 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDPF 388 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECSCCTT
T ss_pred CCCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEecCCC
Confidence 36899999999999999999995 9999863 4799999999999999988876
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.26 E-value=4.4e-07 Score=74.90 Aligned_cols=47 Identities=23% Similarity=0.539 Sum_probs=39.8
Q ss_pred hccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccceEE
Q 022683 240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASME 287 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~ 287 (293)
+...|.||++.-.+.+++||||. +|..|.... ..||+||.++.....
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 102 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKTY 102 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEEE
T ss_pred ccCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCCC
Confidence 45679999999999999999995 999997653 689999999987543
No 26
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=4.4e-07 Score=66.36 Aligned_cols=44 Identities=23% Similarity=0.516 Sum_probs=38.6
Q ss_pred hccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683 240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
+...|.||++...+.+++||+|. +|..|.... ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34679999999999999999999 999998764 689999999864
No 27
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=5.2e-07 Score=65.77 Aligned_cols=46 Identities=20% Similarity=0.542 Sum_probs=39.1
Q ss_pred hhhccccccccccCcceEEeCCCCcccchhhHhcC-------CCCCcccccccc
Q 022683 238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-------VSCPVCNSAKVA 284 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-------~~CPvCr~~i~~ 284 (293)
..+...|.||++...+.+++||+|. +|..|.... ..||+||.++..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3456789999999999888999999 999998754 279999998864
No 28
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.17 E-value=5e-07 Score=63.86 Aligned_cols=49 Identities=22% Similarity=0.503 Sum_probs=38.7
Q ss_pred ccccccccccCcc-------eEEeCCCCcccchhhHhcC----CCCCccccccc--ceEEEcc
Q 022683 241 KLACKRCNSRNSC-------VLLLPCRHLCSCKQCEAFL----VSCPVCNSAKV--ASMEVFG 290 (293)
Q Consensus 241 ~~~C~iC~~~~~~-------vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~--~~v~v~l 290 (293)
...|.||++.-.+ ++++||||. +|..|.... ..||+||.++. ..+++|+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 4579999987554 388899999 899998753 68999999987 4566654
No 29
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.12 E-value=1.1e-06 Score=60.54 Aligned_cols=43 Identities=26% Similarity=0.646 Sum_probs=35.7
Q ss_pred ccccccccccCcc----eEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683 241 KLACKRCNSRNSC----VLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 241 ~~~C~iC~~~~~~----vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
...|.||++.-.+ ++++||+|. +|..|.... ..||+||.++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4579999987544 889999996 999998764 799999998864
No 30
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=1.1e-06 Score=65.63 Aligned_cols=46 Identities=20% Similarity=0.496 Sum_probs=39.1
Q ss_pred hccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccceE
Q 022683 240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASM 286 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v 286 (293)
+...|.||++.-.+.+++||+|. +|..|.... ..||+||.++...+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred CCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 45689999999999899999998 699998654 68999999987543
No 31
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.05 E-value=7.6e-07 Score=64.44 Aligned_cols=44 Identities=25% Similarity=0.563 Sum_probs=35.9
Q ss_pred hccccccccccCcce-------EEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683 240 RKLACKRCNSRNSCV-------LLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 240 ~~~~C~iC~~~~~~v-------vllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
+...|.||++.-.+. +++||||. +|..|.... ..||+||.++..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 356799999875553 88999997 999998653 699999999874
No 32
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.01 E-value=1.2e-06 Score=63.26 Aligned_cols=46 Identities=30% Similarity=0.562 Sum_probs=36.7
Q ss_pred hcccccccccc---CcceEEeCCCCcccchhhHhcC----CCCCcccccccceE
Q 022683 240 RKLACKRCNSR---NSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASM 286 (293)
Q Consensus 240 ~~~~C~iC~~~---~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v 286 (293)
....|.||++. ...++.+||+|. +|..|.... ..||+||..+...+
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 34679999664 356788999999 899998753 68999999987654
No 33
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=1.5e-06 Score=62.33 Aligned_cols=45 Identities=24% Similarity=0.549 Sum_probs=36.5
Q ss_pred hhccccccccccCcce-------EEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683 239 RRKLACKRCNSRNSCV-------LLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~v-------vllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
.+...|.||++.-.+. +++||+|. +|..|.... ..||+||.+++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3456899999976554 88999996 899998754 689999998864
No 34
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=1.6e-06 Score=65.15 Aligned_cols=45 Identities=36% Similarity=0.702 Sum_probs=37.5
Q ss_pred hhccccccccccCcc----eEEeCCCCcccchhhHhcC-------CCCCcccccccc
Q 022683 239 RRKLACKRCNSRNSC----VLLLPCRHLCSCKQCEAFL-------VSCPVCNSAKVA 284 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~----vvllPC~Hl~lC~~C~~~l-------~~CPvCr~~i~~ 284 (293)
.+...|.||++.-.+ .+++||||. +|..|.... ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 445689999998777 888999997 899998754 589999998754
No 35
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.98 E-value=1.3e-06 Score=61.56 Aligned_cols=44 Identities=32% Similarity=0.838 Sum_probs=37.5
Q ss_pred hccccccccccCcceEEeCCCCcccchhhHhcC-CCCCcccccccc
Q 022683 240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-VSCPVCNSAKVA 284 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-~~CPvCr~~i~~ 284 (293)
+...|.||++.-.+-+++||+|. +|..|.... ..||+||..+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 45689999999889899999998 899998654 589999998763
No 36
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.98 E-value=2.6e-06 Score=63.17 Aligned_cols=45 Identities=22% Similarity=0.541 Sum_probs=38.5
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHhc----------CCCCCcccccccc
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF----------LVSCPVCNSAKVA 284 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~----------l~~CPvCr~~i~~ 284 (293)
.+...|.||++...+-+++||+|. +|..|... ...||+||.++..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 445689999999888889999998 89999865 4689999999874
No 37
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.98 E-value=1.5e-06 Score=64.13 Aligned_cols=45 Identities=29% Similarity=0.612 Sum_probs=37.9
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHhc-----------CCCCCcccccccc
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF-----------LVSCPVCNSAKVA 284 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----------l~~CPvCr~~i~~ 284 (293)
.+...|.||++.-.+.+.+||||. +|..|... ...||+||.++..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 446789999999888788899997 89999875 3589999998864
No 38
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=1.8e-06 Score=63.18 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=38.6
Q ss_pred hhhccccccccccCcceEEe-CCCCcccchhhHhc----CCCCCcccccccce
Q 022683 238 ERRKLACKRCNSRNSCVLLL-PCRHLCSCKQCEAF----LVSCPVCNSAKVAS 285 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvll-PC~Hl~lC~~C~~~----l~~CPvCr~~i~~~ 285 (293)
..+...|.||++...+.+.+ ||+|. +|..|... -..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 34567899999998887766 99998 79999854 36999999998754
No 39
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.97 E-value=3.7e-06 Score=57.97 Aligned_cols=42 Identities=26% Similarity=0.621 Sum_probs=34.6
Q ss_pred ccccccccccCcc---eEEeC-CCCcccchhhHhcC----CCCCccccccc
Q 022683 241 KLACKRCNSRNSC---VLLLP-CRHLCSCKQCEAFL----VSCPVCNSAKV 283 (293)
Q Consensus 241 ~~~C~iC~~~~~~---vvllP-C~Hl~lC~~C~~~l----~~CPvCr~~i~ 283 (293)
...|.||++.-.. ++.+| |+|. +|..|.... ..||+||.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4579999988655 77788 9998 999998753 68999998864
No 40
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=2e-06 Score=63.76 Aligned_cols=46 Identities=28% Similarity=0.576 Sum_probs=38.9
Q ss_pred hhhccccccccccCcceEEeCCCCcccchhhHhc----------CCCCCcccccccc
Q 022683 238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF----------LVSCPVCNSAKVA 284 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~----------l~~CPvCr~~i~~ 284 (293)
..+...|.||++...+.+++||+|. +|..|... ...||+||..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3456789999999888888899998 89999865 4689999998874
No 41
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.92 E-value=2.8e-06 Score=62.83 Aligned_cols=46 Identities=33% Similarity=0.659 Sum_probs=35.9
Q ss_pred hhcccccccccc---CcceEEeCCCCcccchhhHhcC----CCCCcccccccce
Q 022683 239 RRKLACKRCNSR---NSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVAS 285 (293)
Q Consensus 239 ~~~~~C~iC~~~---~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~ 285 (293)
.+...|.||++. ...++.+||+|. +|..|.... ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 345689999664 456677899997 899998643 6899999998753
No 42
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.89 E-value=5.3e-06 Score=66.87 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=40.3
Q ss_pred HhhhhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683 236 KEERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA 284 (293)
Q Consensus 236 ~~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~ 284 (293)
....+...|.||++.-.+-+.+||||. +|..|.... ..||+||.++..
T Consensus 47 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred HhCccCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 345667899999999999888999998 899998542 489999999875
No 43
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.88 E-value=6e-06 Score=59.11 Aligned_cols=43 Identities=28% Similarity=0.743 Sum_probs=33.3
Q ss_pred ccccccccc----cCcc-eEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683 241 KLACKRCNS----RNSC-VLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA 284 (293)
Q Consensus 241 ~~~C~iC~~----~~~~-vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~ 284 (293)
+..|.||++ ++.. ++++||||. +|..|.... ..||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 457999999 2322 256899998 899998765 579999999864
No 44
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.85 E-value=9.2e-06 Score=62.86 Aligned_cols=48 Identities=23% Similarity=0.536 Sum_probs=39.6
Q ss_pred HhhhhccccccccccCcceEEe-CCCCcccchhhHhcC----CCCCcccccccc
Q 022683 236 KEERRKLACKRCNSRNSCVLLL-PCRHLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 236 ~~~~~~~~C~iC~~~~~~vvll-PC~Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
+...+...|.||++.-.+-+.+ ||||. +|..|.... ..||+||..+..
T Consensus 17 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 17 KTIDDLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HhCCCCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4456678999999998887777 99998 899997653 589999998874
No 45
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.84 E-value=5.1e-06 Score=61.13 Aligned_cols=44 Identities=23% Similarity=0.584 Sum_probs=35.2
Q ss_pred hcccccccccc---CcceEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683 240 RKLACKRCNSR---NSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 240 ~~~~C~iC~~~---~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
+...|.||++. ...++.+||+|. +|..|.... ..||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34579999965 344688899998 999998753 689999998864
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.84 E-value=6.9e-06 Score=64.42 Aligned_cols=47 Identities=26% Similarity=0.555 Sum_probs=39.0
Q ss_pred hhhhccccccccccCcceEEeCCCCcccchhhHhcC-------CCCCcccccccc
Q 022683 237 EERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-------VSCPVCNSAKVA 284 (293)
Q Consensus 237 ~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-------~~CPvCr~~i~~ 284 (293)
...+...|.||++.-.+.+.+||||. +|..|.... ..||+||.++..
T Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 17 AMQKILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHHHTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred hccCCCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 45567799999999888888899997 899997653 279999998874
No 47
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=3.9e-06 Score=61.44 Aligned_cols=48 Identities=21% Similarity=0.477 Sum_probs=37.6
Q ss_pred hccccccccccC---cceEEeCCCCcccchhhHhcC----CCCCcccccccceEEE
Q 022683 240 RKLACKRCNSRN---SCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASMEV 288 (293)
Q Consensus 240 ~~~~C~iC~~~~---~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v 288 (293)
....|.||++.- ..+..+||+|. +|..|.... ..||+||.++.....+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 456799998873 45667799998 999998653 6899999998775443
No 48
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.81 E-value=9e-06 Score=63.50 Aligned_cols=49 Identities=20% Similarity=0.440 Sum_probs=41.2
Q ss_pred HHhhhhccccccccccCcceEE-eCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683 235 LKEERRKLACKRCNSRNSCVLL-LPCRHLCSCKQCEAFL-----VSCPVCNSAKVA 284 (293)
Q Consensus 235 ~~~~~~~~~C~iC~~~~~~vvl-lPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~ 284 (293)
.....+...|.||++.-.+-+. +||||. +|..|-... ..||+||.++..
T Consensus 16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cccCCCCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3456778899999999999888 999999 899998653 589999998753
No 49
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=4e-06 Score=60.23 Aligned_cols=45 Identities=27% Similarity=0.587 Sum_probs=37.8
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA 284 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~ 284 (293)
.+...|.||++.-.+.+.+||||. +|..|.... ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 446789999998888777899999 899998742 589999998864
No 50
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.79 E-value=5.3e-06 Score=63.75 Aligned_cols=44 Identities=30% Similarity=0.639 Sum_probs=35.4
Q ss_pred hccccccccccCcc---eEEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683 240 RKLACKRCNSRNSC---VLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 240 ~~~~C~iC~~~~~~---vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
+...|.||++.-.. ++.+||+|. +|..|.... ..||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45679999876544 788999996 999998653 689999998764
No 51
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.78 E-value=1.4e-05 Score=62.90 Aligned_cols=47 Identities=26% Similarity=0.509 Sum_probs=39.9
Q ss_pred hhhhccccccccccCcceEEe-CCCCcccchhhHhcC----CCCCcccccccc
Q 022683 237 EERRKLACKRCNSRNSCVLLL-PCRHLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 237 ~~~~~~~C~iC~~~~~~vvll-PC~Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
...+...|.||++.-.+-+.+ ||||. +|..|.... ..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 456678999999998888877 99998 799998654 689999999875
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.78 E-value=9.9e-06 Score=68.18 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=39.6
Q ss_pred hhhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccce
Q 022683 238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVAS 285 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~~ 285 (293)
..+...|.||++.-.+-+.+||||. +|..|.... ..||+||.++...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4456789999999999999999997 799998653 3799999998754
No 53
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.76 E-value=3.2e-06 Score=64.00 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=38.1
Q ss_pred hhccccccccccC--cceEEeC--CCCcccchhhHhcC-----CCCCcccccccceEEE
Q 022683 239 RRKLACKRCNSRN--SCVLLLP--CRHLCSCKQCEAFL-----VSCPVCNSAKVASMEV 288 (293)
Q Consensus 239 ~~~~~C~iC~~~~--~~vvllP--C~Hl~lC~~C~~~l-----~~CPvCr~~i~~~v~v 288 (293)
.+...|.||++.- .++.++| |||. +|..|...+ ..||+||.++.....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 3456899999965 3566777 9998 999998765 4899999998865433
No 54
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.75 E-value=1.1e-05 Score=64.11 Aligned_cols=44 Identities=27% Similarity=0.609 Sum_probs=37.7
Q ss_pred hccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683 240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA 284 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~ 284 (293)
+...|.||++.-.+-+.+||||. +|..|.... ..||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 35689999999888888899998 899998764 489999998864
No 55
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.74 E-value=1e-05 Score=59.68 Aligned_cols=45 Identities=24% Similarity=0.659 Sum_probs=37.6
Q ss_pred hhhccccccccccCcceEEeC-CCCcccchhhHhcC------CCCCccccccc
Q 022683 238 ERRKLACKRCNSRNSCVLLLP-CRHLCSCKQCEAFL------VSCPVCNSAKV 283 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllP-C~Hl~lC~~C~~~l------~~CPvCr~~i~ 283 (293)
..+...|.||++.-.+-+.+| |+|. +|..|.... ..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 345678999999999989999 9997 899998653 48999999753
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.71 E-value=2.2e-05 Score=62.74 Aligned_cols=48 Identities=29% Similarity=0.658 Sum_probs=41.1
Q ss_pred HHhhhhccccccccccCcceEEe-CCCCcccchhhHhcC--CCCCccccccc
Q 022683 235 LKEERRKLACKRCNSRNSCVLLL-PCRHLCSCKQCEAFL--VSCPVCNSAKV 283 (293)
Q Consensus 235 ~~~~~~~~~C~iC~~~~~~vvll-PC~Hl~lC~~C~~~l--~~CPvCr~~i~ 283 (293)
.....+...|.||++.-.+-+.+ ||||. +|..|.... ..||+||.++.
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 34567788999999999888888 99998 799998776 57999999875
No 57
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.66 E-value=1.5e-05 Score=67.24 Aligned_cols=45 Identities=24% Similarity=0.521 Sum_probs=37.4
Q ss_pred hhhccccccccccCcceEEe-CCCCcccchhhHhcC-----CCCCccccccc
Q 022683 238 ERRKLACKRCNSRNSCVLLL-PCRHLCSCKQCEAFL-----VSCPVCNSAKV 283 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvll-PC~Hl~lC~~C~~~l-----~~CPvCr~~i~ 283 (293)
..+...|.||++.-.+.+.+ ||||. +|..|.... ..||+||.++.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 45567899999998887776 99997 899998653 57999999885
No 58
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.60 E-value=1.6e-05 Score=60.54 Aligned_cols=44 Identities=23% Similarity=0.649 Sum_probs=37.1
Q ss_pred hhhccccccccccCcceEEeC-CCCcccchhhHhcC------CCCCcccccc
Q 022683 238 ERRKLACKRCNSRNSCVLLLP-CRHLCSCKQCEAFL------VSCPVCNSAK 282 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllP-C~Hl~lC~~C~~~l------~~CPvCr~~i 282 (293)
..+...|.||++.-.+-+.+| |||. +|..|.... ..||+||.++
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 345678999999988888999 9999 899997643 5899999986
No 59
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=1.3e-05 Score=55.52 Aligned_cols=39 Identities=28% Similarity=0.697 Sum_probs=33.2
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHhcC-------CCCCcc
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-------VSCPVC 278 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-------~~CPvC 278 (293)
.+...|.||++...+.+++||+|. +|..|.... ..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 446789999999888888999999 899997643 689998
No 60
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.55 E-value=2.4e-05 Score=57.74 Aligned_cols=45 Identities=7% Similarity=0.063 Sum_probs=37.8
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHhc-----CCCCCcccccccc
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF-----LVSCPVCNSAKVA 284 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i~~ 284 (293)
.+...|.||++--.+-+.+||||. +|..|-.. -..||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 346789999999888888899999 89999754 3579999999864
No 61
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.54 E-value=3.6e-05 Score=61.10 Aligned_cols=46 Identities=22% Similarity=0.501 Sum_probs=39.0
Q ss_pred hhhccccccccccCcceEEeCCCCcccchhhHhc-----CCCCCcccccccc
Q 022683 238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF-----LVSCPVCNSAKVA 284 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i~~ 284 (293)
..+...|.||++.-.+.+.+||||. +|..|... -..||+||.++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4456789999999999888999999 89999764 3589999999865
No 62
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=2.6e-05 Score=55.26 Aligned_cols=40 Identities=23% Similarity=0.629 Sum_probs=33.7
Q ss_pred hhhccccccccccCcceEEeCCCCcccchhhHhcC-------CCCCcc
Q 022683 238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-------VSCPVC 278 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-------~~CPvC 278 (293)
..+...|.||++.-.+.+.+||||. +|..|.... ..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999999999888999999 899997643 479998
No 63
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.49 E-value=3.8e-05 Score=61.46 Aligned_cols=46 Identities=28% Similarity=0.471 Sum_probs=38.9
Q ss_pred hhhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683 238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA 284 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~ 284 (293)
..+...|.||++.-.+-+.+||||. +|..|.... ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3456789999999888888999998 899998653 499999999875
No 64
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.41 E-value=5e-05 Score=60.46 Aligned_cols=44 Identities=25% Similarity=0.563 Sum_probs=35.8
Q ss_pred hccccccccccCcce-------EEeCCCCcccchhhHhcC----CCCCcccccccc
Q 022683 240 RKLACKRCNSRNSCV-------LLLPCRHLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 240 ~~~~C~iC~~~~~~v-------vllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
+...|.||++.-.+- +.+||||. +|..|.... ..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 456899999876553 88999996 899998653 689999999874
No 65
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.30 E-value=8.1e-05 Score=59.25 Aligned_cols=50 Identities=22% Similarity=0.503 Sum_probs=39.2
Q ss_pred hccccccccccCcce-------EEeCCCCcccchhhHhc----CCCCCccccccc--ceEEEcc
Q 022683 240 RKLACKRCNSRNSCV-------LLLPCRHLCSCKQCEAF----LVSCPVCNSAKV--ASMEVFG 290 (293)
Q Consensus 240 ~~~~C~iC~~~~~~v-------vllPC~Hl~lC~~C~~~----l~~CPvCr~~i~--~~v~v~l 290 (293)
+...|.||++.-... +.+||+|. .|..|... ...||+||.++. ..+++|+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 356799999875553 88899999 99999864 379999999976 4556664
No 66
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.27 E-value=6.1e-05 Score=59.42 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=32.0
Q ss_pred cccccccccC------------------cceEEeCCCCcccchhhHhc---------CCCCCcccccccc
Q 022683 242 LACKRCNSRN------------------SCVLLLPCRHLCSCKQCEAF---------LVSCPVCNSAKVA 284 (293)
Q Consensus 242 ~~C~iC~~~~------------------~~vvllPC~Hl~lC~~C~~~---------l~~CPvCr~~i~~ 284 (293)
..|.||++.- ..+.++||+|. +|..|-.. -..||+||..+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4799998764 23448899997 99999653 2589999998753
No 67
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.00016 Score=54.30 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=23.1
Q ss_pred eEEeCCCCcccchhhHhc----CCCCCcccccccc
Q 022683 254 VLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVA 284 (293)
Q Consensus 254 vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~ 284 (293)
+++.+|+|. ++..|-.. -..||+||.++..
T Consensus 43 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 43 VVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp EEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred EEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 344459999 99999864 2689999998753
No 68
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.99 E-value=0.00011 Score=61.17 Aligned_cols=45 Identities=22% Similarity=0.486 Sum_probs=37.9
Q ss_pred hhhhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccc
Q 022683 237 EERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAK 282 (293)
Q Consensus 237 ~~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i 282 (293)
...+...|.||++--.+-+.+||||. +|..|-... ..||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 45567899999998888788899998 899998764 4899999975
No 69
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.93 E-value=0.00093 Score=58.22 Aligned_cols=45 Identities=13% Similarity=-0.135 Sum_probs=36.5
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA 284 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~ 284 (293)
.+...|.||++--.+=|.+||||. .|..|-... ..||+|+.+.+.
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 346789999999889888899997 899995432 369999998764
No 70
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.87 E-value=0.00039 Score=58.68 Aligned_cols=46 Identities=28% Similarity=0.471 Sum_probs=39.2
Q ss_pred hhhccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683 238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA 284 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~ 284 (293)
..+...|.||++--.+-+.+||||. +|..|.... ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3456789999999888888999998 899998764 499999999876
No 71
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.58 E-value=0.00048 Score=52.36 Aligned_cols=46 Identities=7% Similarity=-0.068 Sum_probs=38.8
Q ss_pred hhhccccccccccCcceEEeCCCCcccchhhHhc----CCCCCcccccccc
Q 022683 238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVA 284 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~ 284 (293)
..+...|.||++--.+=|.+||||. .|..|-.. -..||+|+.+++.
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CchheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4457899999999999999999998 89999654 3699999998764
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.57 E-value=0.0021 Score=51.28 Aligned_cols=45 Identities=22% Similarity=0.614 Sum_probs=32.7
Q ss_pred cccccccCcc-eEEeCCCCcccchhhHhc-----CCCCCcccccccceEEEc
Q 022683 244 CKRCNSRNSC-VLLLPCRHLCSCKQCEAF-----LVSCPVCNSAKVASMEVF 289 (293)
Q Consensus 244 C~iC~~~~~~-vvllPC~Hl~lC~~C~~~-----l~~CPvCr~~i~~~v~v~ 289 (293)
|.+|.---.. .-++||.| ++|.+|+.. .+.||+|+.+|...=++.
T Consensus 4 C~~C~~Pi~iygRmIPCkH-vFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp CTTTCSBCSEEEEEETTCC-EEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred cCccCCCeEEEeeeccccc-cHHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence 5556544333 23789999 699999943 479999999998765543
No 73
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.51 E-value=0.001 Score=59.12 Aligned_cols=44 Identities=14% Similarity=-0.121 Sum_probs=36.9
Q ss_pred hccccccccccCcceEEeCCCCcccchhhHhcC-----CCCCcccccccc
Q 022683 240 RKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL-----VSCPVCNSAKVA 284 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l-----~~CPvCr~~i~~ 284 (293)
+...|.||++--.+=|.+||||. .|..|-... ..||+||.+++.
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 45689999999999999999998 899996532 359999998863
No 74
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.45 E-value=0.0013 Score=52.36 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=24.7
Q ss_pred ceEEeCCCCcccchhhHhc----CCCCCccccccc
Q 022683 253 CVLLLPCRHLCSCKQCEAF----LVSCPVCNSAKV 283 (293)
Q Consensus 253 ~vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~ 283 (293)
.++++||+|. ++..|-.. -..||+||....
T Consensus 67 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 67 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred eEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 3678899998 99999875 368999999853
No 75
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.20 E-value=0.002 Score=50.51 Aligned_cols=46 Identities=7% Similarity=-0.052 Sum_probs=39.0
Q ss_pred hhhccccccccccCcceEEeCCCCcccchhhHhc----CCCCCcccccccc
Q 022683 238 ERRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAF----LVSCPVCNSAKVA 284 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~----l~~CPvCr~~i~~ 284 (293)
..+...|.||++--.+=|.+||||. .|..|-.. -..||+|+.+++.
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 4567899999999999999999998 89999654 2689999998764
No 76
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.16 E-value=0.0023 Score=50.01 Aligned_cols=46 Identities=11% Similarity=-0.050 Sum_probs=38.5
Q ss_pred hhhccccccccccCcceEEeCCC-CcccchhhHhcC----CCCCcccccccc
Q 022683 238 ERRKLACKRCNSRNSCVLLLPCR-HLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvllPC~-Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
..+...|.||++--.+=|.+||| |. .|..|-... ..||+||.+++.
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45578999999999998999999 87 899996542 689999998764
No 77
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.56 E-value=0.0022 Score=52.22 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=0.0
Q ss_pred ceEEeCCCCcccchhhHhcC----CCCCcccccc
Q 022683 253 CVLLLPCRHLCSCKQCEAFL----VSCPVCNSAK 282 (293)
Q Consensus 253 ~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i 282 (293)
.++++||+|. ++..|-..- ..||+||.+.
T Consensus 78 ~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 78 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ----------------------------------
T ss_pred ccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 3456799998 899998763 6899999975
No 78
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.34 E-value=0.0078 Score=45.46 Aligned_cols=43 Identities=21% Similarity=0.608 Sum_probs=32.1
Q ss_pred ccccccccccC--cceEEeCCC-----CcccchhhHhcC------CCCCcccccccc
Q 022683 241 KLACKRCNSRN--SCVLLLPCR-----HLCSCKQCEAFL------VSCPVCNSAKVA 284 (293)
Q Consensus 241 ~~~C~iC~~~~--~~vvllPC~-----Hl~lC~~C~~~l------~~CPvCr~~i~~ 284 (293)
...|.||++.. -+.+++||+ |. +-..|-..- ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 45799999642 345678997 87 788887643 489999998764
No 79
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.60 E-value=0.0074 Score=46.01 Aligned_cols=40 Identities=25% Similarity=0.670 Sum_probs=29.4
Q ss_pred ccccccccccCcc--e-EEeCCCCcccchhhHhcC------------CCCCc--cccc
Q 022683 241 KLACKRCNSRNSC--V-LLLPCRHLCSCKQCEAFL------------VSCPV--CNSA 281 (293)
Q Consensus 241 ~~~C~iC~~~~~~--v-vllPC~Hl~lC~~C~~~l------------~~CPv--Cr~~ 281 (293)
...|.||++.-.. + .+.||+|. .|..|.... -.||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4579999986433 2 23489998 999995431 37999 9987
No 80
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.27 E-value=0.02 Score=43.95 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=33.4
Q ss_pred hccccccccccCcceEEeC-CCCcccchhhHhcC----------CCCCc--cccc
Q 022683 240 RKLACKRCNSRNSCVLLLP-CRHLCSCKQCEAFL----------VSCPV--CNSA 281 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllP-C~Hl~lC~~C~~~l----------~~CPv--Cr~~ 281 (293)
+...|.||++--.+=|.+| |||. .|+.|-... ..||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4578999999999988887 9998 899995432 38999 9854
No 81
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=90.27 E-value=0.091 Score=48.40 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=35.6
Q ss_pred hhhccccccccccCcceEE-eCCCCcccchhhHhcC------CCCCc--cccccc
Q 022683 238 ERRKLACKRCNSRNSCVLL-LPCRHLCSCKQCEAFL------VSCPV--CNSAKV 283 (293)
Q Consensus 238 ~~~~~~C~iC~~~~~~vvl-lPC~Hl~lC~~C~~~l------~~CPv--Cr~~i~ 283 (293)
......|.||++.-.+=|. ..|||. .|+.|-... ..||+ |+..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3456799999998888665 599996 899997653 36999 998764
No 82
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=89.91 E-value=0.082 Score=37.65 Aligned_cols=44 Identities=16% Similarity=0.321 Sum_probs=28.7
Q ss_pred hccccccccccCcceEEeCCCCcc----cchhhHhc------CCCCCccccccc
Q 022683 240 RKLACKRCNSRNSCVLLLPCRHLC----SCKQCEAF------LVSCPVCNSAKV 283 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllPC~Hl~----lC~~C~~~------l~~CPvCr~~i~ 283 (293)
+...|.||++....-++.||.+.- +=..|... -..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 345799999876665679986421 22234332 268999998764
No 83
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=84.12 E-value=0.53 Score=33.35 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=35.0
Q ss_pred cccccccccCcceEEe-CCCCcccchhhHhcC----CCCCcccccccc
Q 022683 242 LACKRCNSRNSCVLLL-PCRHLCSCKQCEAFL----VSCPVCNSAKVA 284 (293)
Q Consensus 242 ~~C~iC~~~~~~vvll-PC~Hl~lC~~C~~~l----~~CPvCr~~i~~ 284 (293)
..|.||++--.+=++. ||||. .++.|-... .+||+++.+.+.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 5799999988888888 99998 888887654 579999998754
No 84
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=77.70 E-value=0.79 Score=36.09 Aligned_cols=50 Identities=22% Similarity=0.521 Sum_probs=40.8
Q ss_pred hhccccccccccCcceEEeCCCCcccchhhHhcC----CCCCcccccccceEEEcc
Q 022683 239 RRKLACKRCNSRNSCVLLLPCRHLCSCKQCEAFL----VSCPVCNSAKVASMEVFG 290 (293)
Q Consensus 239 ~~~~~C~iC~~~~~~vvllPC~Hl~lC~~C~~~l----~~CPvCr~~i~~~v~v~l 290 (293)
-....||.|.-...+.| -|.---+|..|-..| +.||+|..+....|++-.
T Consensus 26 ~G~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~ 79 (99)
T 2ko5_A 26 LGPQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSA 79 (99)
T ss_dssp SCCCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTT
T ss_pred cCcccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceecCc
Confidence 34568999999888654 587777999999987 799999999888777644
No 85
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=55.10 E-value=4.2 Score=30.62 Aligned_cols=30 Identities=20% Similarity=0.569 Sum_probs=22.6
Q ss_pred cccccccccc-CcceEE--eCCCCcccchhhHhc
Q 022683 241 KLACKRCNSR-NSCVLL--LPCRHLCSCKQCEAF 271 (293)
Q Consensus 241 ~~~C~iC~~~-~~~vvl--lPC~Hl~lC~~C~~~ 271 (293)
+..|.+|.+. ....+. ++|+|. +|..|...
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 4679999964 333333 999998 99999875
No 86
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=54.92 E-value=53 Score=26.41 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=23.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHcHHH
Q 022683 98 ALPQSLHTQLELQRQELECILHIQSER 124 (293)
Q Consensus 98 ~~~~~l~~~l~~q~~EiD~~i~~q~er 124 (293)
+.+|-|..+|+|-+.|.|.+++.+-++
T Consensus 32 ~~sDPL~~ELeRLr~~~d~~~K~HE~k 58 (115)
T 3vem_A 32 VFNDPFLHELEKLRRESENSKKTFEEK 58 (115)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999988665
No 87
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=53.17 E-value=1.6 Score=41.86 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=30.5
Q ss_pred ccccccccccCcc---eE-----EeCCCCcccchhhHhc---------------CCCCCcccccccceEEE
Q 022683 241 KLACKRCNSRNSC---VL-----LLPCRHLCSCKQCEAF---------------LVSCPVCNSAKVASMEV 288 (293)
Q Consensus 241 ~~~C~iC~~~~~~---vv-----llPC~Hl~lC~~C~~~---------------l~~CPvCr~~i~~~v~v 288 (293)
...|.||++.-.. +- -.+|+|. +=..|-.. ...||+||.+|+.+...
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~~ 377 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFAA 377 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGGG
T ss_pred CccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHHH
Confidence 4579999986444 11 2368887 45555422 14799999999876543
No 88
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=42.56 E-value=12 Score=29.13 Aligned_cols=43 Identities=21% Similarity=0.637 Sum_probs=31.9
Q ss_pred cccccccccc----CcceEEeCCCCc--ccchhhHhc-----CCCCCccccccc
Q 022683 241 KLACKRCNSR----NSCVLLLPCRHL--CSCKQCEAF-----LVSCPVCNSAKV 283 (293)
Q Consensus 241 ~~~C~iC~~~----~~~vvllPC~Hl--~lC~~C~~~-----l~~CPvCr~~i~ 283 (293)
...|.||.+. .-.=+|+-|..- .+|+.|..- -+.||.|.+..+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4689999986 222378888654 479999764 389999998876
No 89
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=41.02 E-value=1.8e+02 Score=25.17 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=49.5
Q ss_pred HHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhhhhhhHHHHhhccccchHHHHHHHHhHHhHH
Q 022683 119 HIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVM 195 (293)
Q Consensus 119 ~~q~erlr~~l~e~r~rh~r~ll~avE~~~~~~LrqK~eELa~Ag~~y~eleerLr~w~~E~~~Wq~hAr~neac~~ 195 (293)
+.+.+.|+..|.|.. -.++.|=+ +.+.+|..+-+.+..|..++.++..|-+.|.........-.+
T Consensus 23 ~q~~~~le~El~EFq-esSrELE~-----------ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~ 87 (189)
T 2v71_A 23 KQSFQEARDELVEFQ-EGSRELEA-----------ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY 87 (189)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777774 34444444 345889999999999999999999999999998888776633
No 90
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=37.88 E-value=1.1e+02 Score=22.94 Aligned_cols=59 Identities=20% Similarity=0.394 Sum_probs=30.7
Q ss_pred ccchHHH----HHHHHHHHHHHHHHHHcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCHHHHHHH
Q 022683 98 ALPQSLH----TQLELQRQELECILHIQSE------RLRSALLEQRKQQLGAVLKSVESKAMNLMRQKEEDLIQA 162 (293)
Q Consensus 98 ~~~~~l~----~~l~~q~~EiD~~i~~q~e------rlr~~l~e~r~rh~r~ll~avE~~~~~~LrqK~eELa~A 162 (293)
++.|-|. -.+++-+.||+.+=+.+.| +|..+|.+.-+.+.. += .....|+.|.+||+++
T Consensus 7 AVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~-l~-----~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 7 AVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAE-VD-----KNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHH
Confidence 4555443 3456667777777666543 222333322222211 21 2345788888888765
No 91
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.66 E-value=26 Score=25.62 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=27.4
Q ss_pred ccccccccccCcceEE-eCCCCcccchhhHhc------CCCCCcccccccceE
Q 022683 241 KLACKRCNSRNSCVLL-LPCRHLCSCKQCEAF------LVSCPVCNSAKVASM 286 (293)
Q Consensus 241 ~~~C~iC~~~~~~vvl-lPC~Hl~lC~~C~~~------l~~CPvCr~~i~~~v 286 (293)
...|.||++--..-.- .-|+|. +=..|..+ -..||+||......+
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 3469999886543221 156555 33456542 168999999876543
No 92
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=34.95 E-value=14 Score=31.17 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=13.4
Q ss_pred CCCCcccccccceEEE
Q 022683 273 VSCPVCNSAKVASMEV 288 (293)
Q Consensus 273 ~~CPvCr~~i~~~v~v 288 (293)
..||+|..+...+.++
T Consensus 154 ~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 154 EYCPVCGAPKEKFVVF 169 (170)
T ss_dssp SBCTTTCCBGGGCEEE
T ss_pred CCCCCCCCCHHHceec
Confidence 5999999998887664
No 93
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=32.60 E-value=17 Score=25.03 Aligned_cols=14 Identities=43% Similarity=0.876 Sum_probs=9.7
Q ss_pred CCCcccccccceEE
Q 022683 274 SCPVCNSAKVASME 287 (293)
Q Consensus 274 ~CPvCr~~i~~~v~ 287 (293)
.||+|...+..+..
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (52)
T 1e8j_A 38 ACPVCGASKDAFEK 51 (52)
T ss_dssp CCSSSCCCTTSCEE
T ss_pred cCCCCCCcHHHcEE
Confidence 67777777766654
No 94
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=32.40 E-value=19 Score=24.75 Aligned_cols=15 Identities=27% Similarity=0.758 Sum_probs=10.5
Q ss_pred CCCcccccccceEEE
Q 022683 274 SCPVCNSAKVASMEV 288 (293)
Q Consensus 274 ~CPvCr~~i~~~v~v 288 (293)
.||+|...+..+..+
T Consensus 37 ~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 37 VCPLCGAPKSEFERI 51 (52)
T ss_dssp BCTTTCCBGGGEEEE
T ss_pred cCCCCCCCHHHcEEC
Confidence 577777777766654
No 95
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=31.73 E-value=1.6e+02 Score=27.62 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=26.1
Q ss_pred HHHHHHHHcHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHh
Q 022683 113 ELECILHIQSERLRSALLEQRKQQ------LGAVLKSVESKAMNLM 152 (293)
Q Consensus 113 EiD~~i~~q~erlr~~l~e~r~rh------~r~ll~avE~~~~~~L 152 (293)
++.++|+-+.++++..+.+.|++- +.+|..++|.+++..+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ 442 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Confidence 455777778888888888877443 3445566666665544
No 96
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=31.52 E-value=2.1e+02 Score=24.04 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=14.9
Q ss_pred hhhhhhhHHHHhhccccc
Q 022683 163 TRRAMELEACLRKAEMES 180 (293)
Q Consensus 163 g~~y~eleerLr~w~~E~ 180 (293)
-+|...+.+.|++|+++.
T Consensus 160 L~y~~kl~~~ik~we~g~ 177 (181)
T 3uo3_A 160 LKYWYNLAKAFKDWAPGK 177 (181)
T ss_dssp HHHHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 377788999999999864
No 97
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=31.22 E-value=17 Score=25.35 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=8.9
Q ss_pred CCCcccccccceEE
Q 022683 274 SCPVCNSAKVASME 287 (293)
Q Consensus 274 ~CPvCr~~i~~~v~ 287 (293)
.||+|...+..+..
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (54)
T 4rxn_A 38 VCPLCGVGKDEFEE 51 (54)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHceE
Confidence 57777766666554
No 98
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=31.08 E-value=19 Score=25.05 Aligned_cols=15 Identities=27% Similarity=0.643 Sum_probs=11.3
Q ss_pred CCCcccccccceEEE
Q 022683 274 SCPVCNSAKVASMEV 288 (293)
Q Consensus 274 ~CPvCr~~i~~~v~v 288 (293)
.||+|...+..+..+
T Consensus 38 ~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 38 VCPDCGVGKIDFEMI 52 (55)
T ss_dssp CCTTTCCCGGGEEEC
T ss_pred cCCCCCCCHHHceec
Confidence 688888887777654
No 99
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=28.88 E-value=25 Score=26.52 Aligned_cols=16 Identities=44% Similarity=0.592 Sum_probs=14.1
Q ss_pred CCCcccccccceEEEc
Q 022683 274 SCPVCNSAKVASMEVF 289 (293)
Q Consensus 274 ~CPvCr~~i~~~v~v~ 289 (293)
.||+|..++..+..+-
T Consensus 62 ~CPvCga~K~~F~~i~ 77 (81)
T 2kn9_A 62 SCPDCGAAKSDFEMVE 77 (81)
T ss_dssp CCTTTCCCGGGEEEEC
T ss_pred cCCCCCCCHHHcEEcc
Confidence 7999999999988864
No 100
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.70 E-value=22 Score=32.91 Aligned_cols=43 Identities=21% Similarity=0.515 Sum_probs=32.5
Q ss_pred hccccccccccCcceEEeC----CCC-cccchhhHhcC----CCCCcccccc
Q 022683 240 RKLACKRCNSRNSCVLLLP----CRH-LCSCKQCEAFL----VSCPVCNSAK 282 (293)
Q Consensus 240 ~~~~C~iC~~~~~~vvllP----C~H-l~lC~~C~~~l----~~CPvCr~~i 282 (293)
....|.+|.+.+.-.++.. =|+ ...|.-|...- -+||.|....
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 3568999999998776652 343 45899998753 6999999973
No 101
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.57 E-value=22 Score=23.98 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=10.8
Q ss_pred CCCcccccccceEE
Q 022683 274 SCPVCNSAKVASME 287 (293)
Q Consensus 274 ~CPvCr~~i~~~v~ 287 (293)
.||+|...+..+..
T Consensus 32 ~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 32 CCPVCGVSKDQFSP 45 (46)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHcEe
Confidence 78888888777654
No 102
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.37 E-value=4.4e+02 Score=25.26 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 022683 108 ELQRQELECILHIQSERLRSALLEQRKQQL 137 (293)
Q Consensus 108 ~~q~~EiD~~i~~q~erlr~~l~e~r~rh~ 137 (293)
+.--++.++=|+-..++|+..|.+..+-|.
T Consensus 55 qg~Ldk~er~~~~rIe~L~~~L~~~s~s~~ 84 (390)
T 1deq_A 55 KGLIDEVDQDFTSRINKLRDSLFNYQKNSK 84 (390)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 333344445556666777777777665553
No 103
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=25.90 E-value=17 Score=31.08 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=12.5
Q ss_pred CCCCcccccccceEE
Q 022683 273 VSCPVCNSAKVASME 287 (293)
Q Consensus 273 ~~CPvCr~~i~~~v~ 287 (293)
..||+|..++..+..
T Consensus 172 ~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 172 ELCPACAHPKAHFEL 186 (191)
T ss_dssp SBCTTTCCBGGGEEE
T ss_pred CCCCCCcCCHHHHHh
Confidence 499999999887754
No 104
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=25.53 E-value=24 Score=25.76 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=12.8
Q ss_pred CCCcccccccceEEE
Q 022683 274 SCPVCNSAKVASMEV 288 (293)
Q Consensus 274 ~CPvCr~~i~~~v~v 288 (293)
.||+|..++..+..+
T Consensus 42 ~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSPKNQFKSI 56 (70)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCCCCCCCHHHceEc
Confidence 699999998888776
No 105
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.70 E-value=4.8e+02 Score=24.85 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=18.9
Q ss_pred hHHHHhhccccchHHHHHHHHhHHhHHHHHHHHHH
Q 022683 169 LEACLRKAEMESESWQRLARANEAMVMDLSNTLEQ 203 (293)
Q Consensus 169 leerLr~w~~E~~~Wq~hAr~neac~~~L~~~L~q 203 (293)
..+.+++.+.+...++.+.+....-..-|+..+..
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33445555566666666666655555544444333
No 106
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.49 E-value=2.1e+02 Score=28.74 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 022683 99 LPQSLHTQLELQRQELECILHIQSERLRSALLEQRKQQLGAVLKSVESKAMNLMR 153 (293)
Q Consensus 99 ~~~~l~~~l~~q~~EiD~~i~~q~erlr~~l~e~r~rh~r~ll~avE~~~~~~Lr 153 (293)
++++|..+++.-+.+||.-| .+.--||..|+++| .=+..+|..+..+||
T Consensus 111 ~S~ELRRrIqyLKekVdnQl-snIrvLQsnLedq~-----~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 111 VSEDLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQL-----VDMKRLEVDIDIKIR 159 (562)
T ss_dssp TTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
No 107
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=22.31 E-value=1.4e+02 Score=21.85 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcHHHHHHHHHHH
Q 022683 102 SLHTQLELQRQELECILHIQSERLRSALLEQ 132 (293)
Q Consensus 102 ~l~~~l~~q~~EiD~~i~~q~erlr~~l~e~ 132 (293)
+|...|..++.|||++ ++=...||..|..+
T Consensus 7 eL~~kl~~Kq~EI~rL-nvlvgslR~KLiKY 36 (74)
T 2q6q_A 7 ELNFKLREKQNEIFEL-KKIAETLRSKLEKY 36 (74)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 6788899999999986 44456677766655
No 108
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.06 E-value=97 Score=29.44 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=45.2
Q ss_pred HhhcCHHHHHHHhhhhhhhHHHHhhccccchHHHHHHHHhHHhHHHHHHHHHHHHhh
Q 022683 151 LMRQKEEDLIQATRRAMELEACLRKAEMESESWQRLARANEAMVMDLSNTLEQVKER 207 (293)
Q Consensus 151 ~LrqK~eELa~Ag~~y~eleerLr~w~~E~~~Wq~hAr~neac~~~L~~~L~qvk~~ 207 (293)
.+.+++++|+.......++++.++++..+-..+.+..+.-+...--|++.++.++|.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 455666777777777778888888888888888888888888888889999998884
Done!