Query 022685
Match_columns 293
No_of_seqs 176 out of 1349
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:23:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2964 Arginase family protei 100.0 4.6E-70 1E-74 474.5 23.5 290 2-293 60-357 (361)
2 PLN02615 arginase 100.0 6.1E-69 1.3E-73 495.2 30.9 290 4-293 49-338 (338)
3 TIGR01230 agmatinase agmatinas 100.0 4.7E-60 1E-64 427.0 29.5 260 13-289 12-274 (275)
4 PRK13775 formimidoylglutamase; 100.0 1.5E-59 3.3E-64 432.8 28.3 265 13-293 45-326 (328)
5 TIGR01227 hutG formimidoylglut 100.0 2.3E-59 5E-64 428.6 28.4 259 13-288 34-306 (307)
6 PRK13774 formimidoylglutamase; 100.0 2.1E-59 4.7E-64 428.9 27.8 255 13-288 43-310 (311)
7 PRK01722 formimidoylglutamase; 100.0 2.2E-59 4.7E-64 431.2 27.5 264 13-293 40-318 (320)
8 COG0010 SpeB Arginase/agmatina 100.0 5.9E-59 1.3E-63 425.0 29.7 272 13-293 21-303 (305)
9 PRK13772 formimidoylglutamase; 100.0 8.4E-59 1.8E-63 425.5 27.6 258 11-288 38-314 (314)
10 PRK02190 agmatinase; Provision 100.0 1.9E-58 4.1E-63 421.5 28.3 264 13-292 26-296 (301)
11 PF00491 Arginase: Arginase fa 100.0 3.9E-59 8.5E-64 421.9 23.3 266 14-288 1-276 (277)
12 PRK13776 formimidoylglutamase; 100.0 2.6E-58 5.6E-63 422.7 28.0 258 12-289 40-316 (318)
13 PRK13773 formimidoylglutamase; 100.0 4E-58 8.7E-63 422.7 27.9 259 13-291 43-319 (324)
14 TIGR01229 rocF_arginase argina 100.0 4.8E-56 1E-60 405.4 25.2 261 17-290 1-297 (300)
15 KOG2965 Arginase [Amino acid t 100.0 7.1E-47 1.5E-51 324.7 22.7 257 15-286 16-310 (318)
16 PF12640 UPF0489: UPF0489 doma 95.7 0.059 1.3E-06 44.7 8.1 34 111-144 6-41 (162)
17 KOG1384 tRNA delta(2)-isopente 63.5 13 0.00029 34.4 4.9 39 82-121 77-115 (348)
18 PRK02240 GTP cyclohydrolase II 43.4 49 0.0011 29.5 5.0 52 65-116 9-60 (254)
19 cd06839 PLPDE_III_Btrk_like Ty 40.8 3E+02 0.0066 25.5 11.4 106 156-262 65-176 (382)
20 KOG4518 Hydroxypyruvate isomer 38.0 68 0.0015 27.7 4.8 43 228-273 207-251 (264)
21 PF01715 IPPT: IPP transferase 36.1 54 0.0012 29.2 4.2 40 81-121 36-75 (253)
22 cd06831 PLPDE_III_ODC_like_AZI 34.6 4.1E+02 0.0088 25.2 11.2 101 154-263 68-172 (394)
23 COG0646 MetH Methionine syntha 33.3 1.1E+02 0.0023 28.2 5.5 35 90-126 275-309 (311)
24 PRK13586 1-(5-phosphoribosyl)- 30.9 3.1E+02 0.0067 24.0 8.1 121 128-263 45-169 (232)
25 TIGR00287 cas1 CRISPR-associat 30.3 61 0.0013 29.8 3.7 34 105-141 37-70 (323)
26 PRK15052 D-tagatose-1,6-bispho 28.7 1.8E+02 0.0039 28.0 6.4 90 80-175 58-172 (421)
27 TIGR02810 agaZ_gatZ D-tagatose 28.6 1.8E+02 0.0039 28.0 6.4 85 90-176 63-173 (420)
28 cd06285 PBP1_LacI_like_7 Ligan 27.0 1.3E+02 0.0027 25.9 5.0 50 92-141 164-216 (265)
29 PF03698 UPF0180: Uncharacteri 27.0 2.5E+02 0.0054 20.4 6.8 71 171-252 4-77 (80)
30 PF14312 FG-GAP_2: FG-GAP repe 25.9 58 0.0012 21.1 2.0 23 12-34 24-46 (49)
31 TIGR03638 cas1_ECOLI CRISPR-as 25.6 88 0.0019 28.1 3.8 33 104-139 46-78 (269)
32 PF04951 Peptidase_M55: D-amin 24.8 78 0.0017 28.5 3.2 31 215-250 2-35 (265)
33 COG3623 SgaU Putative L-xylulo 24.4 62 0.0013 28.8 2.4 27 236-267 13-39 (287)
34 COG0324 MiaA tRNA delta(2)-iso 24.3 1.1E+02 0.0024 28.2 4.1 42 81-123 72-113 (308)
35 cd02068 radical_SAM_B12_BD B12 23.5 1E+02 0.0022 23.8 3.3 17 101-117 66-82 (127)
36 COG1099 Predicted metal-depend 23.3 2.8E+02 0.0061 24.5 6.2 104 153-258 82-207 (254)
37 PF02784 Orn_Arg_deC_N: Pyrido 23.0 2.5E+02 0.0055 24.4 6.2 106 152-263 50-163 (251)
38 COG0135 TrpF Phosphoribosylant 22.8 83 0.0018 27.3 2.9 50 218-270 141-193 (208)
39 TIGR03099 dCO2ase_PEP1 pyridox 22.6 6.4E+02 0.014 23.6 10.8 102 156-261 83-191 (398)
40 cd08769 DAP_dppA_2 Peptidase M 22.4 1E+02 0.0022 27.9 3.5 31 215-250 2-35 (270)
41 PLN02748 tRNA dimethylallyltra 22.3 82 0.0018 30.9 3.1 41 81-122 91-131 (468)
42 PF05198 IF3_N: Translation in 22.3 63 0.0014 23.2 1.8 28 239-271 26-53 (76)
43 PF01867 Cas_Cas1: CRISPR asso 22.1 79 0.0017 28.4 2.8 34 105-141 37-70 (282)
44 TIGR03641 cas1_HMARI CRISPR-as 21.8 1E+02 0.0022 28.5 3.5 34 105-141 36-69 (322)
45 PRK15458 tagatose 6-phosphate 21.7 3.5E+02 0.0075 26.2 7.0 73 80-159 61-148 (426)
46 cd08663 DAP_dppA_1 Peptidase M 21.6 1E+02 0.0022 27.8 3.3 29 215-248 2-33 (266)
47 PRK03094 hypothetical protein; 21.4 3.3E+02 0.0072 19.8 6.3 71 171-252 4-77 (80)
48 cd06843 PLPDE_III_PvsE_like Ty 21.0 6.8E+02 0.015 23.3 15.1 106 156-262 60-171 (377)
49 cd08770 DAP_dppA_3 Peptidase M 20.9 1.2E+02 0.0026 27.3 3.6 29 215-248 2-33 (263)
50 PF01202 SKI: Shikimate kinase 20.5 2E+02 0.0044 23.1 4.7 45 92-141 53-97 (158)
51 cd06270 PBP1_GalS_like Ligand 20.3 2.5E+02 0.0053 24.1 5.6 18 106-123 180-197 (268)
52 PLN02840 tRNA dimethylallyltra 20.2 1.3E+02 0.0028 29.0 3.9 40 82-122 91-130 (421)
53 PRK14729 miaA tRNA delta(2)-is 20.1 1.3E+02 0.0029 27.5 3.8 40 82-122 73-112 (300)
54 COG0703 AroK Shikimate kinase 20.1 3.4E+02 0.0073 22.8 5.9 53 84-141 54-107 (172)
No 1
>KOG2964 consensus Arginase family protein [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-70 Score=474.55 Aligned_cols=290 Identities=42% Similarity=0.645 Sum_probs=255.3
Q ss_pred ccccccccCCccCcEEEEcccCCCCCCCCCccchhhHHHHHHHhcCCCCCCcccCCCCCCCCcccccCCcccccccCCCC
Q 022685 2 QGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGV 81 (293)
Q Consensus 2 ~~~~~~~~~~~~~~i~iiGvP~d~g~~~r~Ga~~gP~aiR~a~~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~~~g~ 81 (293)
++++|.-.++-..++++||||+|.|+++|||+||||..||+++|+..+++.++.+.++.++++++|||||+++.++..+.
T Consensus 60 p~~~v~~~~~e~~d~AfiGvPldtgtS~rpGarFgP~~IRE~s~~~~t~n~s~e~~pfksw~~l~D~GDIpV~~yd~~~a 139 (361)
T KOG2964|consen 60 PGVLVLLSGSEDFDIAFIGVPLDTGTSYRPGARFGPSRIREASRRLNTVNPSLEGNPFKSWAKLVDCGDIPVTSYDNQGA 139 (361)
T ss_pred CceEEEecCCCccceEEeccccCCCccCCCccccCCchhhhhhhhhcccCCCcCCccccChhhhcccCCcchhhhhhhhH
Confidence 46778878888899999999999999999999999999999999998888888888898888899999999987654332
Q ss_pred CHHHHHHHHHHHHH-HHHhcCCCccEEeCCCCCCcHHHHHHHHHHcCCCEEEEEEccCCCCCCCCCCCccCcccHHHHHH
Q 022685 82 DDDRLMNVITESVK-LVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIM 160 (293)
Q Consensus 82 ~~~~~~~~i~~~v~-~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~~~~i~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~ 160 (293)
+.......++..++ -+.+.++..|++|||||+++||++++++++|+ +++|||||||+|..++.+|+.++||++|++++
T Consensus 140 ~~q~~~~y~~l~~rkg~a~~~~~~PltLGGDHtI~yPilRAvs~k~G-PV~ilH~DaH~Dt~d~~~g~~~~Hgs~F~r~~ 218 (361)
T KOG2964|consen 140 DDQIEEAYISLLARKGVAKDGPVLPLTLGGDHTIVYPILRAVSRKYG-PVSILHFDAHLDTWDPKEGGKINHGSYFYRAS 218 (361)
T ss_pred HHHHHHHHHHHHHhhhhccCCceeeeeecCCceeeHHHHHHHHHhhC-CceEEEeccCccccCccccCccccchHHHHHh
Confidence 22222222333333 23344568999999999999999999999995 99999999999999999999999999999999
Q ss_pred hcCCCCc--EEEEcccCCChh--hHHHHHhcCceEEecccccch--HHHHHHhhccCCcceEEEEEeccccCCCCCCCCC
Q 022685 161 EGGYARR--LLQVGIRSITKE--GREQGKRFGVEQYEMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVS 234 (293)
Q Consensus 161 ~~~~~~~--~v~iG~r~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~vyvsiDiDvldps~~pg~~ 234 (293)
++|..++ .+|+|+|+...+ .++.-+..|++++.+++++.. ..++++++...+...||||||+|||||++||||+
T Consensus 219 ~eGl~~~~~~iq~GIRt~~s~~~~ye~d~~~Gf~~ieare~~~~gi~~i~e~ir~~~G~k~vYiSiDID~LDPafAPgtg 298 (361)
T KOG2964|consen 219 QEGLASNDRNIQAGIRTILSGLSDYEQDKRCGFEIIEAREIDKIGIDPIVERIRQRVGDKLVYISIDIDVLDPAFAPGTG 298 (361)
T ss_pred hcccccCCceeeeeeeecccCcCchhhccccCeEEEEeeehhhhhhHHHHHHHHHhcCCceEEEEEeecccCcccCCCCC
Confidence 9998766 999999987554 677778899999999999886 5788999877888999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHhhcC-CeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHhhhC
Q 022685 235 HIEPGGLSFRDVLNILHNLQA-DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293 (293)
Q Consensus 235 ~p~pgGlt~~el~~~l~~i~~-~vvg~Di~E~~P~~d~~~~~t~~laa~l~~~~~~~~~~ 293 (293)
+|++||+|.+|++.||+.+.+ +++|+|+||++|.||. ++.|+++||++++|+++.|+|
T Consensus 299 tpE~gGlt~re~l~ILrglqGl~lVGaDvVEvsP~yD~-ae~Tal~AA~llfEi~s~m~K 357 (361)
T KOG2964|consen 299 TPETGGLTTREMLNILRGLQGLNLVGADVVEVSPPYDV-AEMTALAAADLLFEILSKMVK 357 (361)
T ss_pred CCCCCCcCHHHHHHHHhhCccccccccceEEecCccch-hhhHHHHHHHHHHHHHHhccc
Confidence 999999999999999999976 9999999999999995 799999999999999999998
No 2
>PLN02615 arginase
Probab=100.00 E-value=6.1e-69 Score=495.21 Aligned_cols=290 Identities=94% Similarity=1.423 Sum_probs=252.0
Q ss_pred ccccccCCccCcEEEEcccCCCCCCCCCccchhhHHHHHHHhcCCCCCCcccCCCCCCCCcccccCCcccccccCCCCCH
Q 022685 4 ELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDD 83 (293)
Q Consensus 4 ~~~~~~~~~~~~i~iiGvP~d~g~~~r~Ga~~gP~aiR~a~~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~~~g~~~ 83 (293)
|++++.++.+++++|+|+|||.+++||+|+|+||++||++|+....+...+.+.++.+...++|+||+++.+.+..+.+.
T Consensus 49 ~~~~~~~~~~a~~~ilGvP~D~~~s~r~G~r~gP~aIR~as~~~~~~~~~~~~~~~~~~~~i~D~GDv~v~~~~~~g~~~ 128 (338)
T PLN02615 49 ELVRALGGAKASSCLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDD 128 (338)
T ss_pred cccCCcccCCCCEEEEeCCCCCCCCCCCchhhhHHHHHHHHhcCccCCccccCCChhhcCeeEecCCCcCCcccccccCH
Confidence 44667666789999999999999999999999999999999754433334456666665547999999986543333367
Q ss_pred HHHHHHHHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHcCCCEEEEEEccCCCCCCCCCCCccCcccHHHHHHhcC
Q 022685 84 DRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGG 163 (293)
Q Consensus 84 ~~~~~~i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~~~~i~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~ 163 (293)
+++++++++.++.++++++.+||+||||||+|||.++++.++++++++|||||||+|+++++.|+.++|||||+++++.+
T Consensus 129 ~~~~~~i~~~v~~ll~~~~~~Pi~LGGDHsit~~~iral~~~~~~~v~vI~fDAH~Dl~~~~~g~~~shgs~~rr~~e~~ 208 (338)
T PLN02615 129 DRLMNVISESVKLVMEEEPLRPLVLGGDHSISYPVVRAVSEKLGGPVDILHLDAHPDIYHAFEGNKYSHASSFARIMEGG 208 (338)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEECcchHhhHHHHHHHHHHhCCCeEEEEEecCcCCCCCCCCCCcCchhHHHHHhhCC
Confidence 99999999999999986547899999999999999999998876689999999999999998899999999999999987
Q ss_pred CCCcEEEEcccCCChhhHHHHHhcCceEEecccccchHHHHHHhhccCCcceEEEEEeccccCCCCCCCCCCCCCCCCCH
Q 022685 164 YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSF 243 (293)
Q Consensus 164 ~~~~~v~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vyvsiDiDvldps~~pg~~~p~pgGlt~ 243 (293)
..++++|||+|++.++|++++++.+++++++.++.+..++++.+....+..+||||||+|||||+++|||++|+|||||+
T Consensus 209 ~~~~~vqiGiR~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vYiS~DiDvlDpa~aPGtgtpepgGLt~ 288 (338)
T PLN02615 209 YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSKDREKLENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSF 288 (338)
T ss_pred CcCcEEEEeecCCCHHHHHHHHHCCCEEEEeeHhhhHHHHHHHHHhccCCCeEEEEEeeCccCHhhCCCCCCCCCCCCCH
Confidence 77899999999999999999999999999998876545566666433345679999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHhhhC
Q 022685 244 RDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293 (293)
Q Consensus 244 ~el~~~l~~i~~~vvg~Di~E~~P~~d~~~~~t~~laa~l~~~~~~~~~~ 293 (293)
+|++++++.+..+++|+||||++|.+|..+++|+.+||+++++++..|+|
T Consensus 289 ~e~l~il~~l~~~vvG~DvvEv~P~~D~~~~~Ta~laA~li~e~l~~~~~ 338 (338)
T PLN02615 289 RDVLNILHNLQGDVVGADVVEFNPQRDTVDGMTAMVAAKLVRELTAKMSK 338 (338)
T ss_pred HHHHHHHHHhhCCEEEEEEEEECCCCCCCCChHHHHHHHHHHHHHHhhcC
Confidence 99999999996799999999999999953479999999999999999987
No 3
>TIGR01230 agmatinase agmatinase. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887.
Probab=100.00 E-value=4.7e-60 Score=427.01 Aligned_cols=260 Identities=35% Similarity=0.593 Sum_probs=224.8
Q ss_pred cCcEEEEcccCCCCCCCCCccchhhHHHHHHHhcCCCCCCcccCCCCCCCCcccccCCcccccccCCCCCHHHHHHHHHH
Q 022685 13 VASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITE 92 (293)
Q Consensus 13 ~~~i~iiGvP~d~g~~~r~Ga~~gP~aiR~a~~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~~~g~~~~~~~~~i~~ 92 (293)
+++++|+|+|||.|+++|+|+++||++||+++..+..+. .+.+.++..+. ++|+||+.+.. .+.+++++++++
T Consensus 12 ~~~v~viGvP~d~g~~~~~G~~~gP~aiR~a~~~~~~~~-~~~~~~~~~~~-i~D~Gdv~~~~-----~~~~~~~~~i~~ 84 (275)
T TIGR01230 12 EADWVIYGIPYDATTSYRPGSRHGPNAIREASWNLEWYS-NRLDRDLAMLN-VVDAGDLPLAF-----GDAREMFEKIQE 84 (275)
T ss_pred CCCEEEECCCCCCCCCCCCchhhhHHHHHHHHhcccccC-cccCCCcccce-EeecCCCCCCC-----CCHHHHHHHHHH
Confidence 589999999999999999999999999999997654432 33444444443 79999997742 267899999999
Q ss_pred HHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHcCCCEEEEEEccCCCCCCCCCCCccCcccHHHHHHhcCCCCcEEEEc
Q 022685 93 SVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVG 172 (293)
Q Consensus 93 ~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~~~~i~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~~~~~v~iG 172 (293)
.++++++++ .+||++|||||+|+|+++++.+++ ++++|||||||+|+++++.|..++||||++++++.+ .+++++|
T Consensus 85 ~v~~~~~~~-~~pi~lGGdHsis~~~i~al~~~~-~~~~vI~~DAH~D~~~~~~g~~~~~~~~~~~~~~~~--~~iv~iG 160 (275)
T TIGR01230 85 HAEEFLEEG-KFPVAIGGEHSITLPVIRAMAKKF-GKFAVVHFDAHTDLRDEFDGGTLNHACPMRRVIELG--LNVVQFG 160 (275)
T ss_pred HHHHHHhcC-CeEEEecCcchhhHHHHHHHHHhc-CCeEEEEEecccccccccCCCccccHhHHHHHhhCC--CCEEEEE
Confidence 999998877 799999999999999999999887 589999999999999988888889999999999864 6999999
Q ss_pred ccCCChhhHHHHHhcCceEEecccccch-HHHHHHhhccCCcceEEEEEeccccCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 022685 173 IRSITKEGREQGKRFGVEQYEMRTFSRD-RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILH 251 (293)
Q Consensus 173 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~vyvsiDiDvldps~~pg~~~p~pgGlt~~el~~~l~ 251 (293)
+|+++++|++++++.++.+++ .++... .++++.+ ...+||||||+|||||+++|||++|+||||+++|+++++.
T Consensus 161 iR~~~~~e~~~~~~~~~~~~~-~~i~~~~~~~l~~~----~~~~vyis~DiDvlDps~aPg~~~p~pgGl~~~e~~~~~~ 235 (275)
T TIGR01230 161 IRSGFKEENDFARENNIQVLK-REVDDVIAEVKQKV----GDKPVYVTIDIDVLDPAFAPGTGTPEPGGLTSDELINFFV 235 (275)
T ss_pred eCCCChHHHHHHHHcCCEEEe-hHHHHHHHHHHHHh----CCCceEEEEeccccCcccCCCCCCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999 766442 3334332 3357999999999999999999999999999999999888
Q ss_pred hh-c-CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHH
Q 022685 252 NL-Q-ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTA 289 (293)
Q Consensus 252 ~i-~-~~vvg~Di~E~~P~~d~~~~~t~~laa~l~~~~~~ 289 (293)
.+ . .+++|+||||++|.+|. .++|+++||+++++++.
T Consensus 236 ~~~~~~~v~g~DivE~~P~~D~-~~~t~~~aa~li~~~l~ 274 (275)
T TIGR01230 236 RALKDDNVVGFDVVEVAPVYDQ-SEVTALTAAKIALEMLL 274 (275)
T ss_pred HHhcCCCEEEEEEEEeCCCCCC-cchHHHHHHHHHHHHhc
Confidence 76 3 48999999999999997 57999999999999874
No 4
>PRK13775 formimidoylglutamase; Provisional
Probab=100.00 E-value=1.5e-59 Score=432.82 Aligned_cols=265 Identities=22% Similarity=0.351 Sum_probs=221.6
Q ss_pred cCcEEEEcccCCCCC---CCCCccchhhHHHHHHHhcCCCCCCcccCCCCCCCCcccccCCcccccccCCCCCHHHHHHH
Q 022685 13 VASTSLLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNV 89 (293)
Q Consensus 13 ~~~i~iiGvP~d~g~---~~r~Ga~~gP~aiR~a~~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~~~g~~~~~~~~~ 89 (293)
+++++|||+|||.|+ ++|+|+++||++||+++..+.. +.+. ++ .++|+|||++.. .+.++++++
T Consensus 45 ~~~v~iiGvP~d~g~~~n~~r~Ga~~gP~aIR~~l~~~~~----~~~~---~~-~i~D~Gdv~~~~-----~~~~~~~~~ 111 (328)
T PRK13775 45 GTHFALIGFKSDKGVYINNGRVGAVESPAAIRTQLAKFPW----HLGN---QV-MVYDVGNIDGPN-----RSLEQLQNS 111 (328)
T ss_pred CCCEEEEEeccccccCCCCCCcChhHhHHHHHHHHhcccc----ccCC---CC-EEEeCCCcCCCC-----cCHHHHHHH
Confidence 588999999999998 7999999999999999865421 1111 12 379999998753 257889999
Q ss_pred HHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHc--CCCEEEEEEccCCCCCCCCCCCccCcccHHHHHHhcCC---
Q 022685 90 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL--GGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY--- 164 (293)
Q Consensus 90 i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~--~~~i~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~--- 164 (293)
+++.++.+++++ .+||+||||||+|||.++|+.+++ .++++|||||||+|+++ +.++.++||++|+++++.+.
T Consensus 112 l~~~v~~~~~~g-~~PivlGGdHsit~g~~~g~~~~~~~~~~~gvI~~DAH~Dlr~-~~~~~~shg~~~~~~~~~~~~~~ 189 (328)
T PRK13775 112 LSKAIKRMCDLN-LKPIVLGGGHETAYGHYLGLRQSLSPSDDLAVINMDAHFDLRP-YDQTGPNSGTGFRQMFDDAVADK 189 (328)
T ss_pred HHHHHHHHHhCC-CeEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEeccCcCCCC-CCCCCCCCCcHHHHHHHhhcccC
Confidence 999999999877 799999999999999999999875 26899999999999996 55667899999999987532
Q ss_pred -CCcEEEEcccCCCh--hhHHHH-HhcCceEEecccccch--HHHHHHhhc-cCCcceEEEEEeccccCCCCCCCCCCCC
Q 022685 165 -ARRLLQVGIRSITK--EGREQG-KRFGVEQYEMRTFSRD--RQFLENLKL-GEGVKGVYISVDVDCLDPAFAPGVSHIE 237 (293)
Q Consensus 165 -~~~~v~iG~r~~~~--~~~~~~-~~~~~~~~~~~~~~~~--~~~l~~l~~-~~~~~~vyvsiDiDvldps~~pg~~~p~ 237 (293)
..+++++|+|+... ++++++ ++.|++++++.++++. ..+++.+.. ..+.++||||||+|+|||++||||++|+
T Consensus 190 ~~~~~~~iGiR~~~~~~~~~~~~~~~~gi~~~~~~~i~~~g~~~v~~~~~~~~~~~~~vyvS~DiD~lDps~aPGtgtP~ 269 (328)
T PRK13775 190 RLFKYFVLGIQEHNNNLFLFDFVAKSKGIQFLTGQDIYQMGHQKVCRAIDRFLEGQERVYLTIDMDCFSVGAAPGVSAIQ 269 (328)
T ss_pred CCceEEEEEEeCCCCCHHHHHHHHHHcCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEcCccCcccCCCCCCCC
Confidence 34799999999754 467754 5589999999998653 334444321 1244689999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhc--CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHhhhC
Q 022685 238 PGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293 (293)
Q Consensus 238 pgGlt~~el~~~l~~i~--~~vvg~Di~E~~P~~d~~~~~t~~laa~l~~~~~~~~~~ 293 (293)
|||||++|++.+++.+. .+++||||||+||.+|. +++|+.+||+++++++..|+|
T Consensus 270 pgGLt~~e~~~il~~l~~~~~vvg~DivEv~P~~D~-~~~Ta~laa~li~~~l~~~~~ 326 (328)
T PRK13775 270 SLGVDPNLAVLVLQHIAASGKLVGFDVVEVSPPHDI-DNHTANLAATFIFYLVQIMAQ 326 (328)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEEEEECCCCCC-CCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999983 48999999999999996 579999999999999998875
No 5
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=100.00 E-value=2.3e-59 Score=428.57 Aligned_cols=259 Identities=27% Similarity=0.430 Sum_probs=221.2
Q ss_pred cCcEEEEcccCCCCCC---CCCccchhhHHHHHHHhcCCCCCCcccCCCCCCCCcccccCCcccccccCCCCCHHHHHHH
Q 022685 13 VASTSLLGVPLGHNSS---FLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNV 89 (293)
Q Consensus 13 ~~~i~iiGvP~d~g~~---~r~Ga~~gP~aiR~a~~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~~~g~~~~~~~~~ 89 (293)
+++++|+|+|||.|++ +|+|+++||++||+++..+..+. .+. .++|+||+++.. .+.++++++
T Consensus 34 ~~~i~iiGvP~d~g~~~n~~r~G~~~gP~aiR~a~~~~~~~~--------~~~-~i~D~Gdv~~~~-----~~~~~~~~~ 99 (307)
T TIGR01227 34 EKGVALIGFPLDKGVIRNKGRRGARHGPSAIRQALAHLGDWH--------VSE-LLYDLGDIVIHG-----DDLEDTQHE 99 (307)
T ss_pred CCCEEEEeeccCccccCCCCCcChhHCHHHHHHHHHhccccC--------CCC-EEEeCCCCccCc-----hhHHHHHHH
Confidence 5899999999999998 99999999999999997643211 122 379999998743 257899999
Q ss_pred HHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHcCC-C-EEEEEEccCCCCCCCCCCCccCcccHHHHHHhcCC--C
Q 022685 90 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGG-P-VDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY--A 165 (293)
Q Consensus 90 i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~~~-~-i~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~--~ 165 (293)
+++.++++++++ .+||+||||||+|||.++++.+++++ + ++|||||||+|+++++. +.++|||||+++++.+. .
T Consensus 100 i~~~v~~~~~~g-~~Pi~lGGdHsit~~~~~al~~~~~~~~~vgvi~~DAH~D~~~~~~-~~~~~g~~~~~~~~~~~~~~ 177 (307)
T TIGR01227 100 IAQTAAALLADH-RVPVILGGGHSIAYATFAALAQHYKGTTAIGVINFDAHFDLRATED-GGPTSGTPFRQILDECQIED 177 (307)
T ss_pred HHHHHHHHHhcC-CeEEEECCcchhHHHHHHHHHHhcCCCCeEEEEEEccCcCCCCCCC-CCCCCchHHHHHhhccCCCC
Confidence 999999999887 79999999999999999999998743 4 99999999999998763 45789999999998764 4
Q ss_pred CcEEEEcccCCC--hhhHHHHHhcCceEEecccccch--HHHHHHhh-ccCCcceEEEEEeccccCCCCCCCCCCCCCCC
Q 022685 166 RRLLQVGIRSIT--KEGREQGKRFGVEQYEMRTFSRD--RQFLENLK-LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGG 240 (293)
Q Consensus 166 ~~~v~iG~r~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~-~~~~~~~vyvsiDiDvldps~~pg~~~p~pgG 240 (293)
++++++|+|++. +++++++++.+++++++.+++.. ..+.+.+. ...+.++||||||+|||||+++|||++|+|||
T Consensus 178 ~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~DiDvlDps~aPgtg~p~pgG 257 (307)
T TIGR01227 178 FHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDMDVLDAAHAPGVSAPAPGG 257 (307)
T ss_pred CcEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEecccChhhCCCCCCCCCCC
Confidence 689999999984 57789999999999999988652 22223332 11345789999999999999999999999999
Q ss_pred CCHHHHHHHHHhhc--CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHH
Q 022685 241 LSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELT 288 (293)
Q Consensus 241 lt~~el~~~l~~i~--~~vvg~Di~E~~P~~d~~~~~t~~laa~l~~~~~ 288 (293)
||++|++++++.+. .+++|+||+|++|.+|. +++|+++||+++++++
T Consensus 258 Lt~~e~~~il~~l~~~~~vvg~DvvE~~P~~D~-~~~Ta~laa~li~~~l 306 (307)
T TIGR01227 258 LYPDELLELVKRIAASDKVRGAEIAEVNPTLDF-DQRTARAAARLVLHFL 306 (307)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEEEEECCCCCC-CCcHHHHHHHHHHHHh
Confidence 99999999999983 58999999999999996 5899999999999986
No 6
>PRK13774 formimidoylglutamase; Provisional
Probab=100.00 E-value=2.1e-59 Score=428.91 Aligned_cols=255 Identities=22% Similarity=0.291 Sum_probs=218.9
Q ss_pred cCcEEEEcccCCCCC---CCCCccchhhHHHHHHHhcCCCCCCcccCCCCCCCCcccccCCcccccccCCCCCHHHHHHH
Q 022685 13 VASTSLLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNV 89 (293)
Q Consensus 13 ~~~i~iiGvP~d~g~---~~r~Ga~~gP~aiR~a~~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~~~g~~~~~~~~~ 89 (293)
.++++|||+|||.|+ ++|+|+++||++||+++.++.. +..+..++|+||+.+.. .+.++++++
T Consensus 43 ~~~v~iiGvP~d~g~~~n~~r~G~~~gP~aIR~as~~l~~---------~~~~~~i~D~Gdv~~~~-----~~~~~~~~~ 108 (311)
T PRK13774 43 PSGVGILGYAVDKGVALNKGRIGAKEGPDAIKQAFAGLPD---------LNQCETLVDYGNVYHDH-----EELIDTQKE 108 (311)
T ss_pred CCCEEEEEecccccccCCCCCcCHhHhHHHHHHHhhcCCc---------ccccCeEEECCCCCCCc-----cHHHHHHHH
Confidence 578999999999997 7899999999999999875431 11221379999998643 246889999
Q ss_pred HHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHcC-CCEEEEEEccCCCCCCCCCCCccCcccHHHHHHhcCCCCcE
Q 022685 90 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG-GPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRL 168 (293)
Q Consensus 90 i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~~-~~i~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~~~~~ 168 (293)
+++.++++++++ .+||+||||||+|||.++|+.++++ ++++|||||||+|+++++. .+||++|+++++.+...++
T Consensus 109 i~~~v~~i~~~g-~~pivlGGdHsit~g~~~a~~~~~~~~~igvI~~DAH~Dlr~~~~---~~~g~~~~~i~e~~~~~~~ 184 (311)
T PRK13774 109 FAMLAAKSIANH-RQTFLLGGGHDIAYAQYLATRKVYPTQSIGVINIDAHFDTRAEQQ---STSGTSFRQILEEDENTDY 184 (311)
T ss_pred HHHHHHHHHHCC-CeEEEEcCchHHHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCC---CCCChHHHHHHhcCCCCCE
Confidence 999999999877 7999999999999999999998864 4699999999999998764 3699999999987666899
Q ss_pred EEEcccCC--ChhhHHHHHhcCceEEecccccch-----HHHHHHhhccCCcceEEEEEeccccCCCCCCCCCCCCCCCC
Q 022685 169 LQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD-----RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGL 241 (293)
Q Consensus 169 v~iG~r~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~l~~~~~~~~vyvsiDiDvldps~~pg~~~p~pgGl 241 (293)
+++|+|++ .+++++++++.|++++++.++++. .++++.+. .+.++||||||+|+|||++||||++|+||||
T Consensus 185 ~~iGir~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~l~~~~--~~~~~vyvS~DiD~lDps~aPGtgtP~pgGL 262 (311)
T PRK13774 185 LVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFI--HEHDVIMFTICMDVIDSAFAPGVSAPAVLGL 262 (311)
T ss_pred EEEeeCCCCCCHHHHHHHHHcCCEEEEHHHhhhhhHHHHHHHHHHHH--hcCCeEEEEEeeCCcChhhCCCCCCCCCCCC
Confidence 99999987 467789999999999999998652 23333332 2346899999999999999999999999999
Q ss_pred CHHHHHHHHHhh-c-CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHH
Q 022685 242 SFRDVLNILHNL-Q-ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELT 288 (293)
Q Consensus 242 t~~el~~~l~~i-~-~~vvg~Di~E~~P~~d~~~~~t~~laa~l~~~~~ 288 (293)
|++|++++++.+ . .+++|+||||+||.+|. +++|+.+||+++++++
T Consensus 263 t~~e~l~il~~l~~~~~v~g~DivE~nP~~D~-~~~Ta~laa~li~~~l 310 (311)
T PRK13774 263 YPHTVLELAKRIIPSDKVSSVSIAEMNPTYDA-DNRTAKLVANLVHHFL 310 (311)
T ss_pred CHHHHHHHHHHHHhcCCEEEEEEEEECCCCCC-CChHHHHHHHHHHHHh
Confidence 999999999998 3 58999999999999996 5899999999999986
No 7
>PRK01722 formimidoylglutamase; Provisional
Probab=100.00 E-value=2.2e-59 Score=431.19 Aligned_cols=264 Identities=27% Similarity=0.440 Sum_probs=224.9
Q ss_pred cCcEEEEcccCCCCC---CCCCccchhhHHHHHHHhcCCCCCCcccCCCCCCCCcccccCCcccccccCCCCCHHHHHHH
Q 022685 13 VASTSLLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNV 89 (293)
Q Consensus 13 ~~~i~iiGvP~d~g~---~~r~Ga~~gP~aiR~a~~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~~~g~~~~~~~~~ 89 (293)
.++++|+|+|+|.|+ ++|+|+++||++||+++.++..+.. . ..++|+||+++.. .+.++++++
T Consensus 40 ~~~i~iiG~P~d~g~~~n~~r~Ga~~gP~aiR~a~~~~~~~~~--------~-~~i~D~Gdv~~~~-----~~~~~~~~~ 105 (320)
T PRK01722 40 EEGIALLGFACDEGVPRNKGRSGASFAPDAIRRALANMASHAG--------H-ERLYDLGDITCHV-----TDLEEAQQA 105 (320)
T ss_pred CCCEEEEccccccCcCCCCCCccHHHhHHHHHHHHHhccccCC--------C-CeEEECCCcCcCc-----hhHHHHHHH
Confidence 588999999999998 5899999999999999976543211 1 1379999998743 257899999
Q ss_pred HHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHc-CCCEEEEEEccCCCCCCCCCCCccCcccHHHHHHhcC----C
Q 022685 90 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL-GGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGG----Y 164 (293)
Q Consensus 90 i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~-~~~i~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~----~ 164 (293)
+++.+.++++++ .+||+||||||+|+|.++++.+.+ .++++|||||||+|+++++.| .++||||++++++.. .
T Consensus 106 i~~~v~~~~~~g-~~pi~lGGdHsit~~~~~al~~~~~~~~i~vI~~DAH~Dl~~~~~~-~~~hg~~~~~l~~~~~~~~~ 183 (320)
T PRK01722 106 LADTVGHCLRPN-MRTIVLGGGHEIAFGSFAGVADAFPKGKVGIINFDAHHDLRNLEDG-GPSSGTPFRQLLEYCDAQIR 183 (320)
T ss_pred HHHHHHHHHhCC-CeeEEEcCchHHHHHHHHHHHhhccCCcEEEEEEecCccCCCCCCC-CCCCChHHHHHhhhhhccCC
Confidence 999999999877 799999999999999999998832 368999999999999998766 789999999999842 3
Q ss_pred CCcEEEEcccCC--ChhhHHHHHhcCceEEecccccch--HHHHHHhhc-cCCcceEEEEEeccccCCCCCCCCCCCCCC
Q 022685 165 ARRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKL-GEGVKGVYISVDVDCLDPAFAPGVSHIEPG 239 (293)
Q Consensus 165 ~~~~v~iG~r~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~-~~~~~~vyvsiDiDvldps~~pg~~~p~pg 239 (293)
++++++||+|++ .+++++++++.|++++++.++.+. ..+++.+.. ....++||||||+|||||+++|||++|+||
T Consensus 184 ~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~i~~~~~vyvS~DiDvlDps~aPgtgtp~pg 263 (320)
T PRK01722 184 GFHYACIGVSRASNTQALWEEAKELGVTVVTDLDVRERGLKDILTELQEFIDQVDYIYLTIDLDVLPAAEAPGVSAPAAG 263 (320)
T ss_pred CCCEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEecCcChhhCCCCCCCcCC
Confidence 589999999996 457889999999999999988642 334443321 123578999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhc--CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHhhhC
Q 022685 240 GLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293 (293)
Q Consensus 240 Glt~~el~~~l~~i~--~~vvg~Di~E~~P~~d~~~~~t~~laa~l~~~~~~~~~~ 293 (293)
||+++|++++++.+. .+++|+||||++|.+|. +++|+.+||+++++++.++++
T Consensus 264 Gls~~e~~~il~~l~~~~~vvg~DivE~~P~~D~-~~~Ta~laa~li~~~l~~~~~ 318 (320)
T PRK01722 264 GVPLETLLRAIEPICRSGKLQAADLVEYNPTFDF-DDMTARVAARLIWQIAHAWRT 318 (320)
T ss_pred CCCHHHHHHHHHHHHhcCCEEEEEEEEECCCCCC-CCcHHHHHHHHHHHHHHHhhc
Confidence 999999999999983 59999999999999996 589999999999999998764
No 8
>COG0010 SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-59 Score=424.96 Aligned_cols=272 Identities=36% Similarity=0.599 Sum_probs=229.5
Q ss_pred cCcEEEEcccCCCCCCCCCccchhhHHHHHHHhcCCCCCCcccCCCCCCCCcccccCCcccccccCCCCCHHHHHHHHHH
Q 022685 13 VASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITE 92 (293)
Q Consensus 13 ~~~i~iiGvP~d~g~~~r~Ga~~gP~aiR~a~~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~~~g~~~~~~~~~i~~ 92 (293)
..+++|+|+|+|.|+++|+|+++||++||+++.... +... ...++....+++|+||+.... .+.+...+.+++
T Consensus 21 ~~~~~i~g~p~d~~~s~r~Ga~~GP~air~a~~~~~-~~~~-~~~~~~~~~~~~d~gd~~~~~-----~~~~~~~~~~~~ 93 (305)
T COG0010 21 DADIAIIGVPFDGGTSYRPGARFGPDAIREASLNLE-YNVP-LDGDLVEALKIADLGDIELNG-----GDLEDAVDAIEE 93 (305)
T ss_pred cCceEEEeeccccCcCCCcchhhCHHHHHHHhhhcc-cCcc-cccCcccccCccCCCCccCCc-----ccHHHHHHHHHH
Confidence 589999999999999999999999999999998754 2221 111211112479999998754 256788999999
Q ss_pred HHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHcCCCEEEEEEccCCCCCCCCCCCccCcccHHHHHHhcCC----CCcE
Q 022685 93 SVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY----ARRL 168 (293)
Q Consensus 93 ~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~~~~i~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~----~~~~ 168 (293)
.+.+++.++ .+||+||||||+|+|.++++.++++.+++|||||||+|++++++|+.++|||||+++++.+. ++++
T Consensus 94 ~~~~~~~~~-~~pi~lGGDHsit~~~~~a~~~~~~~~~gvI~iDAH~Dl~~~~~g~~~~Hg~p~r~~~e~~~~~~~p~~~ 172 (305)
T COG0010 94 AVAELLSAG-AFPIVLGGDHSITLGTVRALARKYGGPLGVIWIDAHADLRTPYSGSGNSHGTPLRRALEEGLIDGGPENV 172 (305)
T ss_pred HHHHHHhcC-CeeEEECCcchhhHHHHHHHHHhhCCceEEEEEecCccCCCCCCCCCCcccCHHHHHHhccccCCCcceE
Confidence 999998887 79999999999999999999998754799999999999999888889999999999998764 3789
Q ss_pred EEEcccCCChhh-HHHHHhcCceEEecccccch---HHHHHHhhc-cCCcceEEEEEeccccCCCCCCCCCCCCCCCCCH
Q 022685 169 LQVGIRSITKEG-REQGKRFGVEQYEMRTFSRD---RQFLENLKL-GEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSF 243 (293)
Q Consensus 169 v~iG~r~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~-~~~~~~vyvsiDiDvldps~~pg~~~p~pgGlt~ 243 (293)
+++|+|+.+++| .+.+++.|++++++.++... ..+.+.++. ....++||||||+|||||+++|||++|+|||||+
T Consensus 173 v~iGiR~~~~~e~~~~~~~~gi~~~~~~~v~~~~~~~~~~~~i~~~~~~~~~vylSiDiD~lDPa~aPgvgtp~~gGlt~ 252 (305)
T COG0010 173 VQIGIRSVDPEERAAVARERGIRVLTARDVDELGLVDVIEEAIDELKGDGDPVYLSIDLDVLDPAFAPGVGTPEPGGLTF 252 (305)
T ss_pred EEEEeccCChHHHHHHHHhcCCEEEEHHHHHHhcCHHHHHHHHHHhhCCCCeEEEEEecCCcCcccCCCCCCCCCCCCCH
Confidence 999999999888 56888999999999988762 223333331 1245679999999999999999999999999999
Q ss_pred HHHHHHHHhhc--CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHhhhC
Q 022685 244 RDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293 (293)
Q Consensus 244 ~el~~~l~~i~--~~vvg~Di~E~~P~~d~~~~~t~~laa~l~~~~~~~~~~ 293 (293)
+|++.+++.+. .+++|+||||+||.+|. +++|+.+||+++++++..+.+
T Consensus 253 ~e~~~~~~~l~~~~~vvg~DvvEv~P~~D~-~~~Ta~~aa~l~~~ll~~~~~ 303 (305)
T COG0010 253 RELLDLLERLLKSGKVVGFDVVEVNPALDI-SGRTARLAARLIAELLGKRAL 303 (305)
T ss_pred HHHHHHHHHHhccCCEEEEEEEEECCCCCC-CccHHHHHHHHHHHHHHHhhc
Confidence 99999998883 49999999999999995 589999999999999987653
No 9
>PRK13772 formimidoylglutamase; Provisional
Probab=100.00 E-value=8.4e-59 Score=425.51 Aligned_cols=258 Identities=29% Similarity=0.397 Sum_probs=218.6
Q ss_pred CccCcEEEEcccCCCCC---CCCCccchhhHHHHHHHhcCCCCCCcccCCCCCCCCcccccCCcccccccCCCCCHHHHH
Q 022685 11 GAVASTSLLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLM 87 (293)
Q Consensus 11 ~~~~~i~iiGvP~d~g~---~~r~Ga~~gP~aiR~a~~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~~~g~~~~~~~ 87 (293)
...++++|+|+|||.|+ ++|+||++||+|||+++.++..+ + . ..++|+|||++.. .+.++++
T Consensus 38 ~~~~~~~ilGvP~D~g~~~n~~r~Gar~gP~aIR~as~~l~~~-----~----~-~~i~D~Gdv~~~~-----~~~~~~~ 102 (314)
T PRK13772 38 TLAGAPVLLGFACDAGVRRNQGRAGAAHGPREIRRALAGVPAH-----G----L-PALADAGDVVCDD-----GDLESAQ 102 (314)
T ss_pred ccCCCEEEEEeecCcccCcCCCCchHhHhHHHHHHHHhcCCcC-----C----C-CeEEECCCCCcCC-----cCHHHHH
Confidence 44689999999999998 89999999999999999765422 1 1 2489999998743 2578999
Q ss_pred HHHHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHc-----CCCEEEEEEccCCCCCCCCCCCccCcccHHHHHHhc
Q 022685 88 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL-----GGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG 162 (293)
Q Consensus 88 ~~i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~-----~~~i~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~ 162 (293)
+++++.++.+++++ .+||+||||||+|||.++|+.+.. .++++|||||||+|++++. .++||++|+++++.
T Consensus 103 ~~i~~~v~~~~~~g-~~PivlGGdHsit~g~~~a~~~~~~~~~~~~~~gvI~~DAH~D~r~~~---~~~~Gs~~rri~e~ 178 (314)
T PRK13772 103 AALAEVVAEVLAAG-ARPLVLGGGHEVAWGTWQGLRAHLDAQGDRGRVLIINLDAHFDLRTSR---PASSGTPFDQIAED 178 (314)
T ss_pred HHHHHHHHHHHHCC-CEEEEEcCchHHHHhhHHHHHHHhhhcccCCceEEEEecccccCCCCC---CCCCCCHHHHHHHH
Confidence 99999999999887 799999999999999999998642 1489999999999999763 36799999999984
Q ss_pred ----CCCCcEEEEcccCC--ChhhHHHHHhcCceEEecccccch--HHHHHHhhc-cCCcceEEEEEeccccCCCCCCCC
Q 022685 163 ----GYARRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKL-GEGVKGVYISVDVDCLDPAFAPGV 233 (293)
Q Consensus 163 ----~~~~~~v~iG~r~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~-~~~~~~vyvsiDiDvldps~~pg~ 233 (293)
+.+.+++++|+|++ .+++++++++.|+.++++.++... ..+++.+.. ....++||||||+|+|||+++|||
T Consensus 179 ~~~~g~~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~e~~~~g~~~~~~~i~~~l~~~~~vylS~DiD~lDps~aPGv 258 (314)
T PRK13772 179 CAARGQPFDYACLGVSRLSNTPALFARADALGVRYVEDVDMQERHLDARLAELDALLDAADHVYLTIDLDVLPAAVAPGV 258 (314)
T ss_pred HHhcCCcceEEEEecCCCCCChhHHHHHHhCCeEEEEhhhhhhcCHHHHHHHHHHHHhcCCeEEEEEEecCcCcccCCCC
Confidence 34568999999997 567788899999999999888552 334444321 123478999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhc--CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHH
Q 022685 234 SHIEPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELT 288 (293)
Q Consensus 234 ~~p~pgGlt~~el~~~l~~i~--~~vvg~Di~E~~P~~d~~~~~t~~laa~l~~~~~ 288 (293)
++|+|||||++|++++++.+. .+++||||||+||.+|. +++|+.+||++++++|
T Consensus 259 gtP~pgGlt~~e~~~il~~l~~~~~v~g~DvvEv~P~~D~-~~~Ta~laa~li~~~l 314 (314)
T PRK13772 259 SAPAAYGVPLPVVEEIVLHVRASGKLRVADLAEYNPQYDR-DRRTARVAARLAYRLL 314 (314)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCeeEEEEEEECCCCCC-CCCHHHHHHHHHHHhC
Confidence 999999999999999999983 48999999999999997 5799999999999975
No 10
>PRK02190 agmatinase; Provisional
Probab=100.00 E-value=1.9e-58 Score=421.46 Aligned_cols=264 Identities=30% Similarity=0.469 Sum_probs=220.0
Q ss_pred cCcEEEEcccCCCCCCCCCccchhhHHHHHHHhcCC--CCCCcccCCCCCCCCcccccCCcccccccCCCCCHHHHHHHH
Q 022685 13 VASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGS--TNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVI 90 (293)
Q Consensus 13 ~~~i~iiGvP~d~g~~~r~Ga~~gP~aiR~a~~~~~--~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~~~g~~~~~~~~~i 90 (293)
.++++|+|+|+|.|+++|+|+++||++||++++.+. .+.. ..+.+..+...++|+||+.... .+.+++++++
T Consensus 26 ~~~v~iiGvP~d~g~~~~~G~~~gP~aiR~as~~~~~~~~~~-~~~~~~~~~~~i~D~Gdv~~~~-----~~~~~~~~~i 99 (301)
T PRK02190 26 GADWVVTGVPFDMATSGRPGARFGPAAIRQASTNLAWEDRRY-PWNFDLFERLAVVDYGDLVFDY-----GDAEDFPEAL 99 (301)
T ss_pred CCCEEEEecccCCCCCCCCchhhhHHHHHHHHhcccccccCC-CcccCcccCceEEecCCCcCCC-----CCHHHHHHHH
Confidence 589999999999999999999999999999998743 1111 1111111223489999998643 2568899999
Q ss_pred HHHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHcCCCEEEEEEccCCCCCCCCCCCccCcccHHHHHHhcCC--CCcE
Q 022685 91 TESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY--ARRL 168 (293)
Q Consensus 91 ~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~~~~i~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~--~~~~ 168 (293)
++.++++++++ .+||+||||||+|+|.++++.+++ ++++|||||||+|+++++. +.++||||++++++.+. ++++
T Consensus 100 ~~~v~~~~~~g-~~pi~lGGdHsit~~~~~a~~~~~-~~~~vi~~DAH~D~~~~~~-~~~~hg~~~~~~~~~~~v~~~~v 176 (301)
T PRK02190 100 EAHAEKILAAG-KRMLTLGGDHFITLPLLRAHAKHF-GPLALVHFDAHTDTWADGG-SRIDHGTMFYHAPKEGLIDPAHS 176 (301)
T ss_pred HHHHHHHHhCC-CeEEEECCcchhhHHHHHHHHHHc-CCeEEEEEecCCCCCCCcc-CCCCCchHHHHHhcCCCcCCCcE
Confidence 99999999877 799999999999999999999887 5999999999999998875 56889999999998764 5899
Q ss_pred EEEcccCCChhhHHHHHhcCceEEecccccch--HHHHHHhhccCCcceEEEEEeccccCCCCCCCCCCCCCCCCCHHHH
Q 022685 169 LQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDV 246 (293)
Q Consensus 169 v~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~vyvsiDiDvldps~~pg~~~p~pgGlt~~el 246 (293)
++||+|+ ++.++.+++++++.++++. .++++.+....+..+||||||+|||||+++|||++|+||||+++|+
T Consensus 177 v~iGiR~------~~~~~~gi~~~~~~~~~~~g~~~~~~~~~~~l~~~~vyiSiDiDvlDps~aPg~~~p~pgGl~~~e~ 250 (301)
T PRK02190 177 VQIGIRT------EYDKDNGFTVLDARQVNDRGVDAIIAQIKQIVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSAQA 250 (301)
T ss_pred EEEECCC------chHHHCCCEEEEHHHhhccCHHHHHHHHHHHhCCCEEEEEEeecccCcccCCCCCCCCCCCcCHHHH
Confidence 9999998 2346778999999887653 3444444322245789999999999999999999999999999999
Q ss_pred HHHHHhhc-CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHhhh
Q 022685 247 LNILHNLQ-ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKIS 292 (293)
Q Consensus 247 ~~~l~~i~-~~vvg~Di~E~~P~~d~~~~~t~~laa~l~~~~~~~~~ 292 (293)
+++++.+. .+++||||||++|.+|. +++|+.+||+++++++..++
T Consensus 251 ~~il~~i~~~~vvg~DivE~~P~~D~-~~~Ta~laa~li~~~l~~~~ 296 (301)
T PRK02190 251 LKILRGLKGLNIVGMDVVEVAPAYDH-AEITALAAATLALEMLCLQA 296 (301)
T ss_pred HHHHHHHhcCCeEEEEeeeecCCCCC-CCcHHHHHHHHHHHHHHHHH
Confidence 99999885 48999999999999996 57999999999999997653
No 11
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=100.00 E-value=3.9e-59 Score=421.90 Aligned_cols=266 Identities=39% Similarity=0.657 Sum_probs=213.9
Q ss_pred CcEEEEcccCCCCCCCCCccchhhHHHHHHHhcCCCCCCcccCCCCCCCCcccccCCcccccccCCCCCHHHHHHHHHHH
Q 022685 14 ASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITES 93 (293)
Q Consensus 14 ~~i~iiGvP~d~g~~~r~Ga~~gP~aiR~a~~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~~~g~~~~~~~~~i~~~ 93 (293)
++|+|||+|||.+.++++|+++||++||++++.+.. . .+...+......++|+||+.... ..+++++++++.
T Consensus 1 a~i~iiGvP~d~~~~~~~G~~~gP~air~a~~~~~~-~-~~~~~~~~~~~~i~D~Gdv~~~~------~~~~~~~~l~~~ 72 (277)
T PF00491_consen 1 ADIVIIGVPYDGTGSGRPGARFGPDAIREASYRLSP-Q-LEYDLDLGEQLSIVDLGDVPVPP------DNEQVFERLAEA 72 (277)
T ss_dssp ESEEEEEEE--TTTSSSTTGGGHHHHHHHHHCTSHS-C-HHEETCTTGTSEEEEEEEEE-SS------SHHHHHHHHHHH
T ss_pred CeEEEEEeecCCCCCCCCCHHHHHHHHHHHHhhccc-c-cCCCccccccceEEEcCCCcCCc------cHHHHHHHHHHH
Confidence 589999999999888999999999999999976542 0 00011111123489999998752 345689999999
Q ss_pred HHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHcCCCEEEEEEccCCCCCCCC-CCCccCcccHHHHHHhcCC--CCcEEE
Q 022685 94 VKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAF-EGNKYSHASSFARIMEGGY--ARRLLQ 170 (293)
Q Consensus 94 v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~~~~i~vI~~DAH~D~~~~~-~g~~~~~g~~~~~~~~~~~--~~~~v~ 170 (293)
++++++++ .+||++||||++|||.+++++++++++++|||||||+|++++. +++.++||||++++++.+. ++++++
T Consensus 73 v~~~~~~g-~~pi~lGGdhsis~~~~~~l~~~~~~~i~vI~~DAH~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~ 151 (277)
T PF00491_consen 73 VAEVLEAG-AFPIVLGGDHSISYGTIAALARAYGGPIGVIWFDAHPDLRTPETSGSGNSHGMPLRRALEEPLLDPENVVQ 151 (277)
T ss_dssp HHHHHHTT-EEEEEEESSGGGHHHHHHHHHHHHTTTEEEEEESSS----STTTTTSSSGTTSHHHHHHHTTSSEGGGEEE
T ss_pred HHHhhcCC-CEEEecCCCchhHHHhHHHHHhhcCCCeeEEEecCccCCCcccccCCCCCCCChhhhhcccCCcCcCcEEE
Confidence 99999887 8999999999999999999999987799999999999999987 6778999999999997654 489999
Q ss_pred EcccCCChh-hHHHHHhcCceEEecccccch--HHHHHHhh--ccCCcceEEEEEeccccCCCCCCCCCCCCCCCCCHHH
Q 022685 171 VGIRSITKE-GREQGKRFGVEQYEMRTFSRD--RQFLENLK--LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRD 245 (293)
Q Consensus 171 iG~r~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~--~~~~~~~vyvsiDiDvldps~~pg~~~p~pgGlt~~e 245 (293)
||+|++..+ +++++++.+++++++.++++. .++++++. ...+.++||||||+|||||+++|||++|+||||+++|
T Consensus 152 iG~r~~~~~~e~~~~~~~~i~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~vylsiDiDvlDp~~~pg~~~p~pgGl~~~e 231 (277)
T PF00491_consen 152 IGIRSFDNESEYEYLKELGIKIFSADEIREDGIDAVLEEILEALGSGTDPVYLSIDIDVLDPAFAPGVGTPEPGGLSPRE 231 (277)
T ss_dssp EEE-STTHHHHHHHHHHTTSEEEEHHHHHHHHHHHHHHHHHHHHTTSTSEEEEEEEGGGBBTTTSTSBSS-BSS-B-HHH
T ss_pred EecccccchHHHHHHHHcCCEEEehhHhhhhhhhhHHHHHHHHHhcCCCeEEEEEehhhcChhhCCCcCCCcCCCCCHHH
Confidence 999999988 999999999999999998764 23344432 1235689999999999999999999999999999999
Q ss_pred HHHHHHhhc--CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHH
Q 022685 246 VLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELT 288 (293)
Q Consensus 246 l~~~l~~i~--~~vvg~Di~E~~P~~d~~~~~t~~laa~l~~~~~ 288 (293)
++++++.+. .+++|+||+|++|.+|..+++|++++|++++++|
T Consensus 232 ~~~~l~~l~~~~~vvg~di~E~~P~~D~~~~~ta~~aa~li~~~~ 276 (277)
T PF00491_consen 232 LLQLLRALARSGKVVGLDIVEYNPDLDPDGEQTARLAARLIWEFI 276 (277)
T ss_dssp HHHHHHHHHHHSEEEEEEEE-B-GGGSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCeEEEEEEEECCCcCcchHHHHHHHHHHHHHHh
Confidence 999999994 6999999999999999743599999999999974
No 12
>PRK13776 formimidoylglutamase; Provisional
Probab=100.00 E-value=2.6e-58 Score=422.75 Aligned_cols=258 Identities=26% Similarity=0.373 Sum_probs=220.5
Q ss_pred ccCcEEEEcccCCCCC---CCCCccchhhHHHHHHHhcCCCCCCcccCCCCCCCCcccccCCcccccccCCCCCHHHHHH
Q 022685 12 AVASTSLLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMN 88 (293)
Q Consensus 12 ~~~~i~iiGvP~d~g~---~~r~Ga~~gP~aiR~a~~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~~~g~~~~~~~~ 88 (293)
..++++|||+|||.|+ ++|+|+++||++||+++..+..+. .. .++|+||+++.. .+.+++++
T Consensus 40 ~~~~v~iiGvP~d~g~~~n~~r~G~r~gP~aiR~a~~~~~~~~---------~~-~i~D~Gdv~~~~-----~~~~~~~~ 104 (318)
T PRK13776 40 AEPKVALLGFACDAGVRRNQGRVGAKHGPDAIRRALANLPWHG---------GR-AVVDAGDVVCED-----DDLEAAQS 104 (318)
T ss_pred CCCCEEEEeeccccccCCCCCCcChhHCHHHHHHHhhcccccC---------CC-eEEECCCCCCCc-----chHHHHHH
Confidence 3578999999999998 799999999999999987643211 22 379999998753 25789999
Q ss_pred HHHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHc----C-CCEEEEEEccCCCCCCCCCCCccCcccHHHHHHhc-
Q 022685 89 VITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL----G-GPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG- 162 (293)
Q Consensus 89 ~i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~----~-~~i~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~- 162 (293)
++++.++.+++++ .+||+||||||+|||.++|+.+++ + ++++|||||||+|++++ ..++||++|+++++.
T Consensus 105 ~i~~~v~~i~~~g-~~Pi~lGGdHsit~g~~~a~~~~~~~~~~~~~vgvI~~DAH~D~~~~---~~~~~g~~~r~~~e~~ 180 (318)
T PRK13776 105 RYAQRVHDLLDRG-HLPIGLGGGHEIAWASFQGLARHLARSAPLPRIGIINFDAHFDLRKG---ERGSSGTPFRQIAEYC 180 (318)
T ss_pred HHHHHHHHHHhCC-CeEEEEcCchHHHHHhHHHHHHHhhcccCCCceEEEEeCCcccCCCC---CCCCCCCHHHHHHHHH
Confidence 9999999999877 799999999999999999999886 1 58999999999999953 457899999999974
Q ss_pred ---CCCCcEEEEcccCC--ChhhHHHHHhcCceEEecccccch--HHHHHHhh-ccCCcceEEEEEeccccCCCCCCCCC
Q 022685 163 ---GYARRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD--RQFLENLK-LGEGVKGVYISVDVDCLDPAFAPGVS 234 (293)
Q Consensus 163 ---~~~~~~v~iG~r~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~-~~~~~~~vyvsiDiDvldps~~pg~~ 234 (293)
+.+.+++++|+|++ .+++++++++.|+.++++.++.+. ..+++.+. ...+.++||||||+|||||++||||+
T Consensus 181 ~~~g~~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~~vyvS~DiD~lDps~aPGtg 260 (318)
T PRK13776 181 AAKGWPFHYCCLGVSRFSNTAALFERAKQLGVRYLSDEDMYEWSLARILAFLDDFIANVDHIYLTICLDVLPAAVAPGVS 260 (318)
T ss_pred hhcCCcceEEEEccCCCCCCHHHHHHHHHcCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEeCCcCcccCCCCC
Confidence 34578999999987 467789999999999999998653 34555443 11245789999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHhh-c-CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHH
Q 022685 235 HIEPGGLSFRDVLNILHNL-Q-ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTA 289 (293)
Q Consensus 235 ~p~pgGlt~~el~~~l~~i-~-~~vvg~Di~E~~P~~d~~~~~t~~laa~l~~~~~~ 289 (293)
+|+|||||++|++++++.+ . .+++|+||||+||.+|. +++|+.+||+++++++.
T Consensus 261 tP~pgGLt~~e~~~il~~l~~~~~vvg~DvvEv~P~~D~-~~~Ta~laa~li~~~l~ 316 (318)
T PRK13776 261 APAARGVSLWVIEPLVKRIIASGKLRLADIAELNPPLDI-DQRTARVAARLVAELVD 316 (318)
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCEEEEEEEEECCCCCC-CCcHHHHHHHHHHHHHh
Confidence 9999999999999999998 3 58999999999999996 57999999999999984
No 13
>PRK13773 formimidoylglutamase; Provisional
Probab=100.00 E-value=4e-58 Score=422.72 Aligned_cols=259 Identities=25% Similarity=0.324 Sum_probs=219.6
Q ss_pred cCcEEEEcccCCCCC---CCCCccchhhHHHHHHHhcCCCCCCcccCCCCCCCCcccccCCcccccccCCCCCHHHHHHH
Q 022685 13 VASTSLLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNV 89 (293)
Q Consensus 13 ~~~i~iiGvP~d~g~---~~r~Ga~~gP~aiR~a~~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~~~g~~~~~~~~~ 89 (293)
.++++|||+|||.|+ ++|+|+++||++||++++.+..+ ... .++|+||+++.. .+.++++++
T Consensus 43 ~~~i~iiGvP~d~g~~~n~~r~G~~~gP~aIR~a~~~~~~~---------~~~-~i~D~Gdv~~~~-----~~~~~~~~~ 107 (324)
T PRK13773 43 ARGCVLLGFASDEGVRRNKGRVGAAAGPDALRGALGSLALH---------EPR-RVYDAGTVTVPG-----GDLEAGQER 107 (324)
T ss_pred CCCEEEEEeccccCCCCCCCCCChhHCHHHHHHHHhhchhc---------cCC-eEEeCCCcCCCC-----cCHHHHHHH
Confidence 378999999999998 79999999999999998764321 122 379999998743 257889999
Q ss_pred HHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHc----CCCEEEEEEccCCCCCCCCCCCccCcccHHHHHHhc---
Q 022685 90 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL----GGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG--- 162 (293)
Q Consensus 90 i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~----~~~i~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~--- 162 (293)
+++.++++++++ .+||+||||||+|||.++|+.+++ +++++|||||||+|++++ ..++|||||+++++.
T Consensus 108 i~~~v~~~~~~g-~~PivLGGdHsit~g~~~a~~~~~~~~~~~~vgvI~~DAH~D~~~~---~~~~~G~p~~~~~~~~~~ 183 (324)
T PRK13773 108 LGDAVSALLDAG-HLPVVLGGGHETAFGSYLGVAGSERRRPGKRLGILNLDAHFDLRAA---PVPSSGTPFRQIARAEEA 183 (324)
T ss_pred HHHHHHHHHHCC-CeeEEECCchHHHHHhHHHHHHhhhcccCCceEEEEeCCCccCCCC---CCCCCChHHHHHhhcccc
Confidence 999999999887 799999999999999999999876 258999999999999986 246899999999984
Q ss_pred -CCCCcEEEEcccCC--ChhhHHHHHhcCceEEecccccch--HHHHHHhh-ccCCcceEEEEEeccccCCCCCCCCCCC
Q 022685 163 -GYARRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD--RQFLENLK-LGEGVKGVYISVDVDCLDPAFAPGVSHI 236 (293)
Q Consensus 163 -~~~~~~v~iG~r~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~-~~~~~~~vyvsiDiDvldps~~pg~~~p 236 (293)
+...+++++|+|+. ..++++++++.|+.++++.+++.. ..+.+.+. ...+.++||||||+|||||++||||++|
T Consensus 184 ~~~~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~vylS~DiD~lDps~aPGtgtP 263 (324)
T PRK13773 184 AGRTFQYSVLGISEPNNTRALFDTARELGVRYLLDEECQVMDRAAVRVFVADFLADVDVIYLTIDLDVLPAAVAPGVSAP 263 (324)
T ss_pred cCCCccEEEeecCcccccHHHHHHHHHcCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEeeCcCCcccCCCCCCC
Confidence 23478999999985 567889999999999999998542 12222222 1124478999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhc--CCeeEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHhh
Q 022685 237 EPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKI 291 (293)
Q Consensus 237 ~pgGlt~~el~~~l~~i~--~~vvg~Di~E~~P~~d~~~~~t~~laa~l~~~~~~~~ 291 (293)
+|||||++|++.+++.+. .+++||||||+||.+|. +++|+.+||+++++++..+
T Consensus 264 ~pgGlt~~E~~~ll~~l~~~~~vvg~DvvE~~P~~D~-~~~Ta~laa~li~~~l~~~ 319 (324)
T PRK13773 264 AAYGVPLEVIQAVCDRVAASGKLALVDVAELNPRFDI-DNRTARVAARLIHTIVTAH 319 (324)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEEEEEEEECCccCC-CCCHHHHHHHHHHHHHHhh
Confidence 999999999999999983 58999999999999996 5799999999999999875
No 14
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=100.00 E-value=4.8e-56 Score=405.43 Aligned_cols=261 Identities=30% Similarity=0.382 Sum_probs=214.6
Q ss_pred EEEcccCCCCCCCCCccchhhHHHHHHH-hcCCCCCCcccCCCCCCCCcccccCCcccccc-cC-------CCCCHHHHH
Q 022685 17 SLLGVPLGHNSSFLQGPAFAPPRIREAI-WCGSTNSTTEEGKELNDPRVLTDVGDVPVQEI-RD-------CGVDDDRLM 87 (293)
Q Consensus 17 ~iiGvP~d~g~~~r~Ga~~gP~aiR~a~-~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~-~~-------~g~~~~~~~ 87 (293)
.|||+|+|.|+ +|+|+++||++||+++ +... .+.+ ..+.|+||+.+... .+ +..+.++++
T Consensus 1 ~liG~P~d~G~-~~~Ga~~gP~aiR~a~l~~~~----~~~~------~~i~D~Gdv~~~~~~~~~~~~~~~~~~~~~~~~ 69 (300)
T TIGR01229 1 GIVGLPFSLGQ-PRRGVDKGPSRLREAGLLETL----RELE------YDMQDLGQLPFAVRPKESPRYAVKNPRYVLAAT 69 (300)
T ss_pred CEEEEecCCCC-CCccHHHhHHHHHHcChHHHH----HhcC------CeeEECCccccCccccccccccccCHHHHHHHH
Confidence 48999999996 6899999999999994 3211 0111 13789999985321 00 011457889
Q ss_pred HHHHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHcC-CCEEEEEEccCCCCCCCCC-CCccCcccHHHHHHhcC--
Q 022685 88 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG-GPVDVLHLDAHPDIYDAFE-GNKYSHASSFARIMEGG-- 163 (293)
Q Consensus 88 ~~i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~~-~~i~vI~~DAH~D~~~~~~-g~~~~~g~~~~~~~~~~-- 163 (293)
+++++.++.+++++ .+||+||||||+|+|.+++++++++ ++++|||||||+|+++++. ++.++|||||+++++..
T Consensus 70 ~~i~~~v~~~~~~g-~~pi~lGGdHsi~~~~~~a~~~~~~~~~~gvI~~DAH~D~~~~~~~~s~~~hG~p~~~~~~~~~~ 148 (300)
T TIGR01229 70 EQLAPKVYEVFEEG-RFPLVLGGDHSIAIGTISGTARVHPDKKLGVLWLDAHADINTPETTTSGNLHGMPVAFLLGRLKS 148 (300)
T ss_pred HHHHHHHHHHHhCC-CeeEEEcCcchhhhhhHHHHHHhcCCCceEEEEEecCcccCCCCCCCCCCcccCHHHHHhcccCc
Confidence 99999999999877 7999999999999999999999874 3599999999999999864 56788999999998621
Q ss_pred ---------------CCCcEEEEcccCCChhhHHHHHhcCceEEecccccch--HHHHHHhh--ccCCcceEEEEEeccc
Q 022685 164 ---------------YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFLENLK--LGEGVKGVYISVDVDC 224 (293)
Q Consensus 164 ---------------~~~~~v~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~--~~~~~~~vyvsiDiDv 224 (293)
.++++++||+|+++++|++++++.+++++++.++++. +++++.+. ......+||||||+||
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~v~iGiR~~~~~e~~~~~~~gi~~~~~~~i~~~g~~~v~~~~~~~l~~~~~~vyvS~DiDv 228 (300)
T TIGR01229 149 EFPDSPGLGWVAPEISPKNLVYIGLRSVDPGERKILKELGIKVFSMHEIDELGIGKVVEETLEYLKAEDGPIHLSLDVDG 228 (300)
T ss_pred cccccccccccCCccCcccEEEEecCCCChHHHHHHHHcCCeEEEHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 2469999999999999999999999999999998653 33444332 1122238999999999
Q ss_pred cCCCCCCCCCCCCCCCCCHHHHHHHHHhhc--CCeeEEEEeeecCCCC--CCCCHHHHHHHHHHHHHHHh
Q 022685 225 LDPAFAPGVSHIEPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRD--TVDGMTAMVAAKLVRELTAK 290 (293)
Q Consensus 225 ldps~~pg~~~p~pgGlt~~el~~~l~~i~--~~vvg~Di~E~~P~~d--~~~~~t~~laa~l~~~~~~~ 290 (293)
|||++||||++|+|||||++|++++++.+. .+++||||+|+||.+| . +++|+.+|++++++++..
T Consensus 229 lDps~aPgv~tp~pgGl~~~e~~~~l~~i~~~~~v~g~DivE~~P~~D~~~-~~~Ta~laa~li~~~lg~ 297 (300)
T TIGR01229 229 LDPSLAPATGTPVVGGLTFREGLLIMEMLYETGLLTALDVVEVNPTLDIKH-VNRTIKTAVEIVRSLLGS 297 (300)
T ss_pred cCcccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEEEEEECccccccc-ccHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999983 5899999999999999 7 589999999999998753
No 15
>KOG2965 consensus Arginase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-47 Score=324.72 Aligned_cols=257 Identities=26% Similarity=0.385 Sum_probs=205.7
Q ss_pred cEEEEcccCCCCCCCCCccchhhHHHHHHHhcCCCCCCcccCCCCCCCCcccccCCccccccc--C--C------CCCHH
Q 022685 15 STSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR--D--C------GVDDD 84 (293)
Q Consensus 15 ~i~iiGvP~d~g~~~r~Ga~~gP~aiR~a~~~~~~~~~~~~~~~~~~~~~v~D~Gdv~~~~~~--~--~------g~~~~ 84 (293)
-|.|||.||..|. .+-|++.||+.||++.+.... .+.+.+ +-|.||+...... + + .....
T Consensus 16 ~v~iIg~pfs~gq-~k~G~E~~pe~i~~agl~~~l---e~lg~~------~~~~g~~~f~~~p~kd~~~~~~~knp~~V~ 85 (318)
T KOG2965|consen 16 VVSIIGAPFSGGQ-PKLGVELAPEVIRKAGLLEDL---EDLGCS------VKDWGDLIFKSRPGKDSPNQALAKNPRSVG 85 (318)
T ss_pred heeEeeccccCCC-CccchhhhHHHHHHhchhhhH---HHcCCC------HHHhcCcccccCCCCCCcchhhhcCchhHh
Confidence 4899999999886 589999999999999864321 123332 3466666542211 1 1 11345
Q ss_pred HHHHHHHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHcCCCEEEEEEccCCCCCCCC---CCCccCcccHHHHHHh
Q 022685 85 RLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAF---EGNKYSHASSFARIME 161 (293)
Q Consensus 85 ~~~~~i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~~~~i~vI~~DAH~D~~~~~---~g~~~~~g~~~~~~~~ 161 (293)
.+.++++..++++++++ .+++++|||||+++|.+.|.++.+ .+++|||+|||.|+++|. +||. ||||++.+++
T Consensus 86 ~atrqla~~v~~vve~~-r~~l~lGGDHSlAIGTvsgva~~~-~D~gvlWvDAHaDinTp~ts~SgNL--HG~PvSflLg 161 (318)
T KOG2965|consen 86 NATRQLANEVSQVVENG-RILLVLGGDHSLAIGTVSGVARVY-PDAGVLWVDAHADINTPDTSPSGNL--HGCPVSFLLG 161 (318)
T ss_pred HHHHHHHHHHHHHHhcC-eEEEEecCcceEEEeeehhhHhhC-CCccEEEEecccccCCCCCCCCCCc--CCCcHHHHHh
Confidence 67889999999999877 799999999999999999999999 489999999999999985 4554 9999999988
Q ss_pred cCC--------------CCcEEEEcccCCChhhHHHHHhcCceEEecccccch--HHHHHHh-h--ccCCcceEEEEEec
Q 022685 162 GGY--------------ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFLENL-K--LGEGVKGVYISVDV 222 (293)
Q Consensus 162 ~~~--------------~~~~v~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l-~--~~~~~~~vyvsiDi 222 (293)
... ++++++||+|++++.|.+++++.+|.+|+|.++++. ..++|.. . ......++++|||+
T Consensus 162 ~~~p~~~~f~w~~p~i~~~~l~yIGLRDvdp~E~~iLk~lgI~~fsm~~Vdk~GI~~Vme~a~~~v~~~~~rpihlSfDv 241 (318)
T KOG2965|consen 162 ELKPLPEGFSWVKPCISPKRLAYIGLRDVDPGEHAILKELGIAAFSMHEVDKYGIQKVMEMAMELVNPGTRRPIHLSFDV 241 (318)
T ss_pred ccCCCCccccccccccChhheEEEecccCChHHHHHHHhcCcceEeehhhHhhhHHHHHHHHHHHhcCCCccceeEEEec
Confidence 631 479999999999999999999999999999999886 3344321 1 22334789999999
Q ss_pred cccCCCCCCCCCCCCCCCCCHHHHHHHHHhh--cCCeeEEEEeeecCCCCCCCCHH----HHHHHHHHHH
Q 022685 223 DCLDPAFAPGVSHIEPGGLSFRDVLNILHNL--QADVVAADVVEFNPQRDTVDGMT----AMVAAKLVRE 286 (293)
Q Consensus 223 Dvldps~~pg~~~p~pgGlt~~el~~~l~~i--~~~vvg~Di~E~~P~~d~~~~~t----~~laa~l~~~ 286 (293)
|.+||+++|+||+|++||||++|.+.++..+ +++++++||+|+||.++.. +.+ ..+|..+++.
T Consensus 242 Dg~Dp~~aPAtGTpv~gGLt~rE~myi~e~i~~Tg~LiAldvvEvnP~l~~t-~eea~~tv~~av~ii~~ 310 (318)
T KOG2965|consen 242 DGFDPSYAPATGTPVVGGLTYREGMYICEEIAETGLLIALDVVEVNPLLGNT-EEEAKTTVSLAVAIIRT 310 (318)
T ss_pred CCcCccccCCCCCcCCCcccHHHHHHHHHHHHhcCCeeEEEEEEeccccCCc-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 4699999999999999963 344 4444444443
No 16
>PF12640 UPF0489: UPF0489 domain; InterPro: IPR024131 This entry describes a family of uncharacterised proteins found in metazoa.
Probab=95.71 E-value=0.059 Score=44.66 Aligned_cols=34 Identities=35% Similarity=0.691 Sum_probs=22.3
Q ss_pred CCCCcHHHH-HHHHHH-cCCCEEEEEEccCCCCCCC
Q 022685 111 DHSISFPVI-RAVSEK-LGGPVDVLHLDAHPDIYDA 144 (293)
Q Consensus 111 dhsit~~~~-~~~~~~-~~~~i~vI~~DAH~D~~~~ 144 (293)
+|.-++... +++.++ .+.+..+||||+|+|+..|
T Consensus 6 ~H~~al~~w~~~~~~~~l~~~~~lvHiD~H~Dl~~p 41 (162)
T PF12640_consen 6 DHNEALPFWYRAIGRGKLPSPNSLVHIDSHPDLRIP 41 (162)
T ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCcc
Confidence 455444444 444433 1267899999999999766
No 17
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=63.52 E-value=13 Score=34.39 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEeCCCCCCcHHHHHH
Q 022685 82 DDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRA 121 (293)
Q Consensus 82 ~~~~~~~~i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~ 121 (293)
+..+-......+++.+.+++ ..||+.||.|+---+.+..
T Consensus 77 t~~~F~~~a~~aie~I~~rg-k~PIv~GGs~~yi~al~~~ 115 (348)
T KOG1384|consen 77 TAGEFEDDASRAIEEIHSRG-KLPIVVGGSNSYLQALLSK 115 (348)
T ss_pred cHHHHHHHHHHHHHHHHhCC-CCCEEeCCchhhHHHHhhc
Confidence 34444455667777788877 7999999999876666543
No 18
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=43.39 E-value=49 Score=29.53 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=31.1
Q ss_pred ccccCCcccccccCCCCCHHHHHHHHHHHHHHHHhcCCCccEEeCCCCCCcH
Q 022685 65 LTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISF 116 (293)
Q Consensus 65 v~D~Gdv~~~~~~~~g~~~~~~~~~i~~~v~~~~~~~~~~pi~lGGdhsit~ 116 (293)
+.++|-...++.+........++.++...+.+.+.+.+.+++.+|||+.+++
T Consensus 9 id~YgpWT~t~~prRE~dlQ~lQsrLya~L~~~~~~~ggl~Ff~RgDN~iav 60 (254)
T PRK02240 9 IDNYGPWTVTPNPRRESDLQALQSRLYADLAQQFGARDGYVFFTRFDNMIAV 60 (254)
T ss_pred ecCCCcCcCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCEEEeccCceEEEE
Confidence 4566666655432211233444455555555555544579999999999887
No 19
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=40.85 E-value=3e+02 Score=25.55 Aligned_cols=106 Identities=11% Similarity=0.106 Sum_probs=58.9
Q ss_pred HHHHHhcCC-CCcEEEEcccCCChhhHHHHHhcCceEEecccccchHHHHHHhhccCCcceEEEEEeccccCCCC-CCCC
Q 022685 156 FARIMEGGY-ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAF-APGV 233 (293)
Q Consensus 156 ~~~~~~~~~-~~~~v~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vyvsiDiDvldps~-~pg~ 233 (293)
+..+.+.+. +.+++..|.- ..+++.+.+-+.++..+..+.+...+.+.+..+.....-+++|-+|.++-.... +.-.
T Consensus 65 ~~~~~~~G~~~~~I~~~~~~-k~~~~l~~a~~~g~~~i~vds~~el~~l~~~a~~~~~~~~v~lRin~~~~~~~~g~~~~ 143 (382)
T cd06839 65 LALALEAGVPPEKILFAGPG-KSDAELRRAIEAGIGTINVESLEELERIDALAEEHGVVARVALRINPDFELKGSGMKMG 143 (382)
T ss_pred HHHHHHcCCCHHHEEEeCCC-CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCccccC
Confidence 344445443 3578877652 356677777777855566555443322222211111224678888765321110 1112
Q ss_pred CCCCCCCCCHHHHHHHHHhhc--C--CeeEEEE
Q 022685 234 SHIEPGGLSFRDVLNILHNLQ--A--DVVAADV 262 (293)
Q Consensus 234 ~~p~pgGlt~~el~~~l~~i~--~--~vvg~Di 262 (293)
+.+...|++..++.++++.+. . ++.|+.+
T Consensus 144 ~~~sKfG~~~~~~~~~~~~~~~~~~l~l~Glh~ 176 (382)
T cd06839 144 GGPSQFGIDVEELPAVLARIAALPNLRFVGLHI 176 (382)
T ss_pred CCCCCcCCCHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 345678999999999988773 2 6778755
No 20
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=38.04 E-value=68 Score=27.72 Aligned_cols=43 Identities=26% Similarity=0.500 Sum_probs=36.1
Q ss_pred CCCCCCCCC-CCCCCCHHHHHHHHHhhc-CCeeEEEEeeecCCCCCCC
Q 022685 228 AFAPGVSHI-EPGGLSFRDVLNILHNLQ-ADVVAADVVEFNPQRDTVD 273 (293)
Q Consensus 228 s~~pg~~~p-~pgGlt~~el~~~l~~i~-~~vvg~Di~E~~P~~d~~~ 273 (293)
+..|+-+.| .+|-+.+.-+.+.++.+. +.++| |||.|..|...
T Consensus 207 AQVP~Rgepd~~GEldy~fiF~~l~~~gy~g~iG---cEYkPk~dtve 251 (264)
T KOG4518|consen 207 AQVPNRGEPDTRGELDYHFIFDELRSIGYSGVIG---CEYKPKLDTVE 251 (264)
T ss_pred eecCCCCCCCCCCccccHHHHHHHHHhCCCceee---eeeccCcCccc
Confidence 568988888 679999999999999997 47777 69999999653
No 21
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=36.10 E-value=54 Score=29.18 Aligned_cols=40 Identities=10% Similarity=0.211 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEeCCCCCCcHHHHHH
Q 022685 81 VDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRA 121 (293)
Q Consensus 81 ~~~~~~~~~i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~ 121 (293)
.+...-.+...+.+..+..+| ..||+.||-+.---+.+.+
T Consensus 36 ysv~~f~~~a~~~i~~i~~rg-k~PIlvGGTglYi~all~g 75 (253)
T PF01715_consen 36 YSVGDFQRDAREAIEDILARG-KIPILVGGTGLYIQALLNG 75 (253)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CeEEEECChHHHHHHHHhC
Confidence 356667777778888888877 7999999976544444433
No 22
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=34.57 E-value=4.1e+02 Score=25.21 Aligned_cols=101 Identities=9% Similarity=0.095 Sum_probs=62.7
Q ss_pred cHHHHHHhcC-CCCcEEEEcccCCChhhHHHHHhcCceEEecccccchHHHHHHhhccCCcceEEEEEeccccCCCCCCC
Q 022685 154 SSFARIMEGG-YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPG 232 (293)
Q Consensus 154 ~~~~~~~~~~-~~~~~v~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vyvsiDiDvldps~~pg 232 (293)
.-+..++..| .+++++.-|.- .+.++.+.+.+.|+..+..+.+.+...+.+. ....+|.|-+-.+ .....
T Consensus 68 gEl~~al~~G~~~~~Iif~gp~-K~~~~l~~a~~~Gv~~i~vDS~~El~~i~~~----~~~~~v~lRi~~~---~~~~~- 138 (394)
T cd06831 68 NEMALVQELGVSPENIIYTNPC-KQASQIKYAAKVGVNIMTCDNEIELKKIARN----HPNAKLLLHIATE---DNIGG- 138 (394)
T ss_pred HHHHHHHhcCCCcCCEEEeCCC-CCHHHHHHHHHCCCCEEEECCHHHHHHHHHh----CCCCcEEEEEecc---CCCCC-
Confidence 3466666655 36788888764 4567778888899987776655443322221 1224688877764 11111
Q ss_pred CCCCCCCCCCHHHHHHHHHhhc--C-CeeEEEEe
Q 022685 233 VSHIEPGGLSFRDVLNILHNLQ--A-DVVAADVV 263 (293)
Q Consensus 233 ~~~p~pgGlt~~el~~~l~~i~--~-~vvg~Di~ 263 (293)
.......|++.+++.++++.+. . +++|+.+-
T Consensus 139 ~~~~~KFGi~~~~~~~~l~~~~~~~l~~~Gih~H 172 (394)
T cd06831 139 EEMNMKFGTTLKNCRHLLECAKELDVQIVGVKFH 172 (394)
T ss_pred CccCCCCCCCHHHHHHHHHHHHHCCCeEEEEEEE
Confidence 1124689999999999988773 2 56666654
No 23
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=33.26 E-value=1.1e+02 Score=28.20 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHc
Q 022685 90 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL 126 (293)
Q Consensus 90 i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~ 126 (293)
+++.+..+.+++ ..=++||-|-.|.-.++++++..
T Consensus 275 ~a~~~~~f~~~g--~vnIvGGCCGTTPeHIraia~~v 309 (311)
T COG0646 275 MAEALAEFAEEG--GVNIVGGCCGTTPEHIRAIAEAV 309 (311)
T ss_pred HHHHHHHHHHhC--CceeeccccCCCHHHHHHHHHHh
Confidence 334444444445 35679999999999999998764
No 24
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.88 E-value=3.1e+02 Score=23.97 Aligned_cols=121 Identities=18% Similarity=0.262 Sum_probs=66.6
Q ss_pred CCEEEEEEccCCCCCCCCCCCccCcccHHHHHHhcCCCCcEEEE--cccCCChhhHHHHHhcCceEEeccccc-chHHHH
Q 022685 128 GPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQV--GIRSITKEGREQGKRFGVEQYEMRTFS-RDRQFL 204 (293)
Q Consensus 128 ~~i~vI~~DAH~D~~~~~~g~~~~~g~~~~~~~~~~~~~~~v~i--G~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 204 (293)
+.+-++-+|+-.+ ... +-..++.+.+... .-+++ |+|+. +..+.+-+.|...+-..... ...+++
T Consensus 45 ~~lhivDLd~a~~-------~~~-n~~~i~~i~~~~~--~~v~vGGGIrs~--e~~~~~l~~Ga~kvvigt~a~~~p~~~ 112 (232)
T PRK13586 45 TRIHVVDLDAAEG-------VGN-NEMYIKEISKIGF--DWIQVGGGIRDI--EKAKRLLSLDVNALVFSTIVFTNFNLF 112 (232)
T ss_pred CEEEEEECCCcCC-------Ccc-hHHHHHHHHhhCC--CCEEEeCCcCCH--HHHHHHHHCCCCEEEECchhhCCHHHH
Confidence 4577777776431 111 2356666666321 13677 56654 34444445666544333221 233455
Q ss_pred HHhhccCCcceEEEEEeccccCCCCCCCCCCCCCCCCCHHHHHHHHHhhc-CCeeEEEEe
Q 022685 205 ENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQ-ADVVAADVV 263 (293)
Q Consensus 205 ~~l~~~~~~~~vyvsiDiDvldps~~pg~~~p~pgGlt~~el~~~l~~i~-~~vvg~Di~ 263 (293)
+++...-+...+.+|+|..- +-..+ +..|...++++.|+.+.++..+ ..++-.||.
T Consensus 113 ~~~~~~~g~~~ivvslD~~~-~~~v~--~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~ 169 (232)
T PRK13586 113 HDIVREIGSNRVLVSIDYDN-TKRVL--IRGWKEKSMEVIDGIKKVNELELLGIIFTYIS 169 (232)
T ss_pred HHHHHHhCCCCEEEEEEcCC-CCEEE--ccCCeeCCCCHHHHHHHHHhcCCCEEEEeccc
Confidence 55432223467999999821 22222 3345557889999888888775 577766663
No 25
>TIGR00287 cas1 CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.
Probab=30.34 E-value=61 Score=29.84 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=28.1
Q ss_pred cEEeCCCCCCcHHHHHHHHHHcCCCEEEEEEccCCCC
Q 022685 105 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDI 141 (293)
Q Consensus 105 pi~lGGdhsit~~~~~~~~~~~~~~i~vI~~DAH~D~ 141 (293)
-|+++|.+++|-++++.+.++ .+.|+++|.+.-.
T Consensus 37 ~I~i~g~~~lst~~l~~l~~~---~I~v~f~~~~g~~ 70 (323)
T TIGR00287 37 CIVLFGGVSISSAAIRELAKR---GIDIVFLGGDGNY 70 (323)
T ss_pred EEEEECCCCcCHHHHHHHHHC---CCeEEEECCCCcE
Confidence 456668899999999999864 6999999987754
No 26
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=28.66 E-value=1.8e+02 Score=28.03 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCC--CccEEeCCCCCCc-----HHHHHHHHHH-------cCCCEEEEEEccCCCCCCCC
Q 022685 80 GVDDDRLMNVITESVKLVMEEDP--LHPLVLGGDHSIS-----FPVIRAVSEK-------LGGPVDVLHLDAHPDIYDAF 145 (293)
Q Consensus 80 g~~~~~~~~~i~~~v~~~~~~~~--~~pi~lGGdhsit-----~~~~~~~~~~-------~~~~i~vI~~DAH~D~~~~~ 145 (293)
|.+..+ .++.|..+.++-+ .-.++|||||.=- .+.-.++... ....+..||+|+-.++.+.
T Consensus 58 GmtP~d----F~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca~d- 132 (421)
T PRK15052 58 GMTPAD----FREFVYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFSKIHLDASMSCADD- 132 (421)
T ss_pred CCCHHH----HHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCCccCC-
Confidence 345544 4444444444332 1147999999754 2233333321 1246889999999987653
Q ss_pred CCCccCcccHHHHHHhc-----------CCCCcEEEEcccC
Q 022685 146 EGNKYSHASSFARIMEG-----------GYARRLLQVGIRS 175 (293)
Q Consensus 146 ~g~~~~~g~~~~~~~~~-----------~~~~~~v~iG~r~ 175 (293)
+..++-.....|+.++ +...-+..||.-.
T Consensus 133 -~~~L~d~~vA~Raa~L~~~aE~~~~~~~~~~~vYvIGTEv 172 (421)
T PRK15052 133 -PIPLAPETVAERAAVLCQAAESVATDCQREQLSYVIGTEV 172 (421)
T ss_pred -CccCCHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecccc
Confidence 2334444444444321 2234566677644
No 27
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=28.63 E-value=1.8e+02 Score=28.01 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCC--CccEEeCCCCCCc-----HHHHHHHHHH-------cCCCEEEEEEccCCCCCCCCCCCccCcccH
Q 022685 90 ITESVKLVMEEDP--LHPLVLGGDHSIS-----FPVIRAVSEK-------LGGPVDVLHLDAHPDIYDAFEGNKYSHASS 155 (293)
Q Consensus 90 i~~~v~~~~~~~~--~~pi~lGGdhsit-----~~~~~~~~~~-------~~~~i~vI~~DAH~D~~~~~~g~~~~~g~~ 155 (293)
.++.|..+.++-+ .-.++|||||.=- ++.-.++... ....+..||+|+-.++.+. +..++-...
T Consensus 63 F~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca~d--~~~L~d~~v 140 (420)
T TIGR02810 63 FRDFVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFTKIHLDASMGCAGD--PAPLDDATV 140 (420)
T ss_pred HHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCCccCC--CccCCHHHH
Confidence 4444444444332 1157999999754 2333444332 1246889999999987653 233444444
Q ss_pred HHHHHhc------------CCCCcEEEEcccCC
Q 022685 156 FARIMEG------------GYARRLLQVGIRSI 176 (293)
Q Consensus 156 ~~~~~~~------------~~~~~~v~iG~r~~ 176 (293)
..|+.++ +...-+..||.-..
T Consensus 141 AeRaa~L~~~aE~~~~~~~~~~~~vYvIGTEvP 173 (420)
T TIGR02810 141 AERAARLCAVAEAAATDRRGETKPVYVIGTEVP 173 (420)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeEEeccccC
Confidence 4444321 22345667776543
No 28
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.02 E-value=1.3e+02 Score=25.92 Aligned_cols=50 Identities=10% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHc---CCCEEEEEEccCCCC
Q 022685 92 ESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL---GGPVDVLHLDAHPDI 141 (293)
Q Consensus 92 ~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~---~~~i~vI~~DAH~D~ 141 (293)
+.+++++++++..-.++..+..++.++++++.++. ++++.++-||.-...
T Consensus 164 ~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~~~~ 216 (265)
T cd06285 164 AAAEKLLRSDSPPTAIFAVNDFAAIGVMGAARDRGLRVPDDVALVGYNDIPLV 216 (265)
T ss_pred HHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCcHHH
Confidence 33444444433345666667777788888887642 356788888866544
No 29
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=26.96 E-value=2.5e+02 Score=20.40 Aligned_cols=71 Identities=10% Similarity=0.170 Sum_probs=42.5
Q ss_pred EcccCCChhhHHHHHhcCceEEecccccchHHHHHHhhccCCcceEEEE-EeccccCCCCCCCCCCC--CCCCCCHHHHH
Q 022685 171 VGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYIS-VDVDCLDPAFAPGVSHI--EPGGLSFRDVL 247 (293)
Q Consensus 171 iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vyvs-iDiDvldps~~pg~~~p--~pgGlt~~el~ 247 (293)
|++-.....-.+.+++.|+.+.++++-.+. .+++.+-+| .|-+++-.+... +..| ..-|+|++|++
T Consensus 4 IAVE~~Ls~v~~~L~~~GyeVv~l~~~~~~----------~~~daiVvtG~~~n~mg~~d~~-~~~pVInA~G~T~eEI~ 72 (80)
T PF03698_consen 4 IAVEEGLSNVKEALREKGYEVVDLENEQDL----------QNVDAIVVTGQDTNMMGIQDTS-TKVPVINASGLTAEEIV 72 (80)
T ss_pred EEecCCchHHHHHHHHCCCEEEecCCcccc----------CCcCEEEEECCCcccccccccc-cCceEEecCCCCHHHHH
Confidence 344443445567889999999988744311 133443333 455555433322 2344 66899999999
Q ss_pred HHHHh
Q 022685 248 NILHN 252 (293)
Q Consensus 248 ~~l~~ 252 (293)
+-++.
T Consensus 73 ~~v~~ 77 (80)
T PF03698_consen 73 QEVEE 77 (80)
T ss_pred HHHHH
Confidence 98864
No 30
>PF14312 FG-GAP_2: FG-GAP repeat
Probab=25.94 E-value=58 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=16.6
Q ss_pred ccCcEEEEcccCCCCCCCCCccc
Q 022685 12 AVASTSLLGVPLGHNSSFLQGPA 34 (293)
Q Consensus 12 ~~~~i~iiGvP~d~g~~~r~Ga~ 34 (293)
+..+.+|+|+|.+.......|+.
T Consensus 24 i~gd~~vVGA~~~~~~~~~~Gaa 46 (49)
T PF14312_consen 24 ISGDTLVVGAPGDDSNGSDSGAA 46 (49)
T ss_pred EeCCEEEEeeeccCCCCCcCCEE
Confidence 45678999999988754455653
No 31
>TIGR03638 cas1_ECOLI CRISPR-associated endonuclease Cas1, ECOLI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.
Probab=25.65 E-value=88 Score=28.10 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=28.4
Q ss_pred ccEEeCCCCCCcHHHHHHHHHHcCCCEEEEEEccCC
Q 022685 104 HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHP 139 (293)
Q Consensus 104 ~pi~lGGdhsit~~~~~~~~~~~~~~i~vI~~DAH~ 139 (293)
--|+++|..++|..+++.+.++ .+.|+|+|...
T Consensus 46 ~~Ivl~g~~siT~~al~~l~~~---gI~v~~~~~~G 78 (269)
T TIGR03638 46 SCLLLGPGTSVTHAAVKLLARH---GCLVVWVGEGG 78 (269)
T ss_pred cEEEEeCCCccCHHHHHHHHHC---CCEEEEECCCC
Confidence 3578889999999999999864 69999999666
No 32
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=24.83 E-value=78 Score=28.52 Aligned_cols=31 Identities=29% Similarity=0.588 Sum_probs=20.0
Q ss_pred eEEEEEeccccCCCCCCCCCCC---CCCCCCHHHHHHHH
Q 022685 215 GVYISVDVDCLDPAFAPGVSHI---EPGGLSFRDVLNIL 250 (293)
Q Consensus 215 ~vyvsiDiDvldps~~pg~~~p---~pgGlt~~el~~~l 250 (293)
+||||.||..+. |+..| .|++..+++..+++
T Consensus 2 KvyISaDmEGia-----Gv~~~~q~~~~~~~Y~~~R~~m 35 (265)
T PF04951_consen 2 KVYISADMEGIA-----GVVSWEQTSPGNPEYERARRLM 35 (265)
T ss_dssp EEEEEE-STTST-----T--SGGGT-TTSTTHHHHHHHH
T ss_pred eEEEEECCCCCC-----CCCCHHHcCCCchHHHHHHHHH
Confidence 699999999876 55555 45777777666555
No 33
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=24.42 E-value=62 Score=28.75 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHHHHHhhcCCeeEEEEeeecC
Q 022685 236 IEPGGLSFRDVLNILHNLQADVVAADVVEFNP 267 (293)
Q Consensus 236 p~pgGlt~~el~~~l~~i~~~vvg~Di~E~~P 267 (293)
.-|.++|+.|=+.+.+.+ |||++|.+-
T Consensus 13 Alp~~~sW~erl~~AK~~-----GFDFvEmSv 39 (287)
T COG3623 13 ALPNGFSWLERLALAKEL-----GFDFVEMSV 39 (287)
T ss_pred hccCCCCHHHHHHHHHHc-----CCCeEEEec
Confidence 468999999999988776 788888875
No 34
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=24.28 E-value=1.1e+02 Score=28.25 Aligned_cols=42 Identities=10% Similarity=0.208 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHHH
Q 022685 81 VDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVS 123 (293)
Q Consensus 81 ~~~~~~~~~i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~ 123 (293)
++..+..+...+.+..+..+| ..||+.||-+..--+.+.++.
T Consensus 72 ysa~~f~~~a~~~i~~i~~rg-k~pIlVGGTglY~~aL~~g~~ 113 (308)
T COG0324 72 YSAAEFQRDALAAIDDILARG-KLPILVGGTGLYLKALLEGLS 113 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhCC-CCcEEEccHHHHHHHHHcCCC
Confidence 456777788888888888887 689999997655444444443
No 35
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=23.48 E-value=1e+02 Score=23.83 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=12.4
Q ss_pred CCCccEEeCCCCCCcHH
Q 022685 101 DPLHPLVLGGDHSISFP 117 (293)
Q Consensus 101 ~~~~pi~lGGdhsit~~ 117 (293)
.+..++++||-|....+
T Consensus 66 ~p~~~iv~GG~~~t~~p 82 (127)
T cd02068 66 LPNVIVVVGGPHATFFP 82 (127)
T ss_pred CCCCEEEECCcchhhCH
Confidence 44678999998876644
No 36
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=23.35 E-value=2.8e+02 Score=24.54 Aligned_cols=104 Identities=21% Similarity=0.384 Sum_probs=55.8
Q ss_pred ccHHHHHHhcCCCCcEEEEcccC---CChhhH-------HHHHhcCceEE--ecccccch--HHHHHHhhccCCcceEEE
Q 022685 153 ASSFARIMEGGYARRLLQVGIRS---ITKEGR-------EQGKRFGVEQY--EMRTFSRD--RQFLENLKLGEGVKGVYI 218 (293)
Q Consensus 153 g~~~~~~~~~~~~~~~v~iG~r~---~~~~~~-------~~~~~~~~~~~--~~~~~~~~--~~~l~~l~~~~~~~~vyv 218 (293)
+-.+..+-+.-..++++-||--+ .+++|. +.+++.++.++ +++.-... ..+++-+. ..+.++--+
T Consensus 82 ~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK~e~t~~ildi~~-~~~l~~~lv 160 (254)
T COG1099 82 EEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPRRNKKEATSKILDILI-ESGLKPSLV 160 (254)
T ss_pred HHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcchhHHHHHHHHHH-HcCCChhhe
Confidence 33344443332345677666554 455553 45566777654 44322211 22333322 122223223
Q ss_pred EEe------cc-ccCCCCCCCCCCCCCCCCCHHHHHHHHHhhc-CCee
Q 022685 219 SVD------VD-CLDPAFAPGVSHIEPGGLSFRDVLNILHNLQ-ADVV 258 (293)
Q Consensus 219 siD------iD-vldps~~pg~~~p~pgGlt~~el~~~l~~i~-~~vv 258 (293)
-+| +| +||-.+.-|- |-.||-||..|+.+|++.-+ .+++
T Consensus 161 vIDH~N~etv~~vld~e~~vGl-TvqPgKlt~~eAveIV~ey~~~r~i 207 (254)
T COG1099 161 VIDHVNEETVDEVLDEEFYVGL-TVQPGKLTVEEAVEIVREYGAERII 207 (254)
T ss_pred ehhcccHHHHHHHHhccceEEE-EecCCcCCHHHHHHHHHHhCcceEE
Confidence 222 34 6777776553 67889999999999999875 4543
No 37
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=22.96 E-value=2.5e+02 Score=24.43 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=65.1
Q ss_pred cccHHHHHHhcC-CCCcEEEEcccCCChhhHHHHHhcCceEEecccccchHHHHHHhhccCCcceEEEEEeccccCCCC-
Q 022685 152 HASSFARIMEGG-YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAF- 229 (293)
Q Consensus 152 ~g~~~~~~~~~~-~~~~~v~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vyvsiDiDvldps~- 229 (293)
...-+..++..+ .+.+++.-|. ..+.++.+.+.+.++..+..+.+.... .+..+. .. .+|-|-+..++-..+.
T Consensus 50 S~~El~~a~~~g~~~~~Ii~~gp-~k~~~~l~~a~~~~~~~i~vDs~~el~-~l~~~~--~~-~~v~lRin~~~~~~~~~ 124 (251)
T PF02784_consen 50 SPGELELALKAGFPPDRIIFTGP-GKSDEELEEAIENGVATINVDSLEELE-RLAELA--PE-ARVGLRINPGIGAGSHP 124 (251)
T ss_dssp SHHHHHHHHHTTTTGGGEEEECS-S--HHHHHHHHHHTESEEEESSHHHHH-HHHHHH--CT-HEEEEEBE-SESTTTSC
T ss_pred cccchHHHHhhhccccceeEecC-cccHHHHHHHHhCCceEEEeCCHHHHH-HHhccC--CC-ceeeEEEeecccccccc
Confidence 344566666655 3578988886 456778888777787777766554433 222222 11 2677777766433332
Q ss_pred --CCCCCCCCCCCCCHHH-HHHHHHhhc--C-CeeEEEEe
Q 022685 230 --APGVSHIEPGGLSFRD-VLNILHNLQ--A-DVVAADVV 263 (293)
Q Consensus 230 --~pg~~~p~pgGlt~~e-l~~~l~~i~--~-~vvg~Di~ 263 (293)
.+| +.+...|+++.+ +.++++.+. + +++|+.+-
T Consensus 125 ~~~~g-~~~skFGi~~~~~~~~~l~~~~~~~l~l~GlH~H 163 (251)
T PF02784_consen 125 KISTG-GKDSKFGIDIEEEAEEALERAKELGLRLVGLHFH 163 (251)
T ss_dssp HHCSS-SHTSSSSBEGGGHHHHHHHHHHHTTEEEEEEEE-
T ss_pred ccCCC-CCCCcCCcChHHHHHHHHHhhccceEEEEEeeee
Confidence 222 235789999999 999998884 3 67788775
No 38
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=22.76 E-value=83 Score=27.28 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=36.0
Q ss_pred EEEeccccCCCCCCCCCCCCCCCCCHHHHHHHHHhhcCCeeEEEEe---eecCCCC
Q 022685 218 ISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADVV---EFNPQRD 270 (293)
Q Consensus 218 vsiDiDvldps~~pg~~~p~pgGlt~~el~~~l~~i~~~vvg~Di~---E~~P~~d 270 (293)
.+||.+.+.+. .......-.|||+++.+.+.++... ..|+|+. |-+|..-
T Consensus 141 ~~fDW~~l~~~-~~~~~~~LAGGL~p~NV~~ai~~~~--p~gvDvSSGVE~~pG~K 193 (208)
T COG0135 141 QTFDWNLLPKL-RLSKPVMLAGGLNPDNVAEAIALGP--PYGVDVSSGVESSPGIK 193 (208)
T ss_pred cEECHHHhccc-cccCCEEEECCCCHHHHHHHHHhcC--CceEEeccccccCCCCC
Confidence 67888888764 1222245779999999999988753 5788886 8888543
No 39
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=22.59 E-value=6.4e+02 Score=23.59 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=57.2
Q ss_pred HHHHHhcCC-CCcEEEEcccCCChhhHHHHHhcCceEEecccccchHHHHHHhhccCCcceEEEEEeccccCCCCCCCC-
Q 022685 156 FARIMEGGY-ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGV- 233 (293)
Q Consensus 156 ~~~~~~~~~-~~~~v~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vyvsiDiDvldps~~pg~- 233 (293)
+..++..|. +++++..|.- ..+++.+.+-+.++ .+..+.+.....+.+..+.....-+|+|-+|.+.-.. -.+.
T Consensus 83 ~~~~~~~G~~~~~I~~~gp~-k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~~~~~~v~LRin~~~~~~--~~~~~ 158 (398)
T TIGR03099 83 LAVALDTGYDPGCISFAGPG-KTDAELRRALAAGV-LINVESLRELNRLAALSEALGLRARVAVRVNPDFELK--GSGMK 158 (398)
T ss_pred HHHHHHcCCChhHEEEeCCC-CCHHHHHHHHhCCC-EEEECCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCC--Ccccc
Confidence 445555543 3468877652 34677777778888 6665544433222221111111245777777653111 1122
Q ss_pred --CCCCCCCCCHHHHHHHHHhhcC---CeeEEE
Q 022685 234 --SHIEPGGLSFRDVLNILHNLQA---DVVAAD 261 (293)
Q Consensus 234 --~~p~pgGlt~~el~~~l~~i~~---~vvg~D 261 (293)
+.....|++..|+.++++.+.. ++.|+.
T Consensus 159 ~~~~~srFGi~~~e~~~~~~~~~~~~l~l~Glh 191 (398)
T TIGR03099 159 MGGGAKQFGIDAEQVPAALAFIKAADLDFQGFH 191 (398)
T ss_pred cCCCCCcCCCCHHHHHHHHHHHHhCCCeEEEEE
Confidence 2357789999999998887742 566664
No 40
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=22.37 E-value=1e+02 Score=27.88 Aligned_cols=31 Identities=32% Similarity=0.653 Sum_probs=21.8
Q ss_pred eEEEEEeccccCCCCCCCCCCC---CCCCCCHHHHHHHH
Q 022685 215 GVYISVDVDCLDPAFAPGVSHI---EPGGLSFRDVLNIL 250 (293)
Q Consensus 215 ~vyvsiDiDvldps~~pg~~~p---~pgGlt~~el~~~l 250 (293)
+||||.||..+- |+..| .|++..+++..+++
T Consensus 2 KiyISaDmEGi~-----Gv~~~~~~~~~~~~y~~~r~~m 35 (270)
T cd08769 2 KIYISVDIEGLP-----GVVSWEMVAPGKELYKEARRLM 35 (270)
T ss_pred eEEEEeCCCCCC-----CCCCHHHcCCCChhHHHHHHHH
Confidence 699999998875 55555 45677666655544
No 41
>PLN02748 tRNA dimethylallyltransferase
Probab=22.31 E-value=82 Score=30.85 Aligned_cols=41 Identities=7% Similarity=0.230 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHH
Q 022685 81 VDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAV 122 (293)
Q Consensus 81 ~~~~~~~~~i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~ 122 (293)
++...-.+...+.+..+..++ ..||+.||-|.-.-+.+.++
T Consensus 91 ysv~~F~~~A~~~I~~I~~rg-k~PIlVGGTglYi~aLl~g~ 131 (468)
T PLN02748 91 FTAKDFRDHAVPLIEEILSRN-GLPVIVGGTNYYIQALVSPF 131 (468)
T ss_pred CcHHHHHHHHHHHHHHHHhcC-CCeEEEcChHHHHHHHHcCc
Confidence 355666667777778888777 68999999988777776554
No 42
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=22.31 E-value=63 Score=23.16 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHhhcCCeeEEEEeeecCCCCC
Q 022685 239 GGLSFRDVLNILHNLQADVVAADVVEFNPQRDT 271 (293)
Q Consensus 239 gGlt~~el~~~l~~i~~~vvg~Di~E~~P~~d~ 271 (293)
|-++.+|++++.+.. ++|++|++|.-++
T Consensus 26 Gv~~~~eAl~~A~~~-----~lDLV~v~~~~~P 53 (76)
T PF05198_consen 26 GVMSLREALRLAKEK-----GLDLVEVSPNADP 53 (76)
T ss_dssp EEEEHHHHHHHHHHT-----T-EEEEEETTSSS
T ss_pred ceEEHHHHHHHHHHc-----CCcEEEEcCCCCC
Confidence 467888999888775 7899999987654
No 43
>PF01867 Cas_Cas1: CRISPR associated protein Cas1; InterPro: IPR002729 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents Cas1, which is a metal-dependent DNA-specific endonuclease []. Cas1 may play a role in the recognition, cleavage, and/or integration of foreign nucleic acids into CRISPRs.; PDB: 2YZS_A 3LFX_D 3PV9_E 3NKE_C 3NKD_A 3GOD_D.
Probab=22.07 E-value=79 Score=28.39 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=26.4
Q ss_pred cEEeCCCCCCcHHHHHHHHHHcCCCEEEEEEccCCCC
Q 022685 105 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDI 141 (293)
Q Consensus 105 pi~lGGdhsit~~~~~~~~~~~~~~i~vI~~DAH~D~ 141 (293)
-|++.|.+++|-.+++.+.++ .+.|+++|.|...
T Consensus 37 ~Ivi~g~~~iSt~ai~~l~~~---gI~v~~~~~~G~~ 70 (282)
T PF01867_consen 37 SIVIFGGVSISTAAIRLLSKN---GIPVVFLDRRGRP 70 (282)
T ss_dssp EEEE-STEEEEHHHHHHHHHT---T-EEEEESTTSEE
T ss_pred EEEEcCCCCCCHHHHHHHHHC---CCcEEEeCCCCCE
Confidence 466666699999999999864 6999999988744
No 44
>TIGR03641 cas1_HMARI CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.
Probab=21.83 E-value=1e+02 Score=28.45 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=28.2
Q ss_pred cEEeCCCCCCcHHHHHHHHHHcCCCEEEEEEccCCCC
Q 022685 105 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDI 141 (293)
Q Consensus 105 pi~lGGdhsit~~~~~~~~~~~~~~i~vI~~DAH~D~ 141 (293)
-|+++|.+++|-.+++.+.++ .+.|+++|.+...
T Consensus 36 ~ivi~g~~~ist~al~~l~~~---gI~v~f~~~~G~~ 69 (322)
T TIGR03641 36 EIYVFGEVSLNSKALSFLSKK---GIPIHFFNYYGYY 69 (322)
T ss_pred eEEEEcCCccCHHHHHHHHHC---CCeEEEECCCCcE
Confidence 466778899999999999864 6899999987754
No 45
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=21.70 E-value=3.5e+02 Score=26.17 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCc---cEEeCCCCCCc-----HHHHHHHHHH-------cCCCEEEEEEccCCCCCCC
Q 022685 80 GVDDDRLMNVITESVKLVMEEDPLH---PLVLGGDHSIS-----FPVIRAVSEK-------LGGPVDVLHLDAHPDIYDA 144 (293)
Q Consensus 80 g~~~~~~~~~i~~~v~~~~~~~~~~---pi~lGGdhsit-----~~~~~~~~~~-------~~~~i~vI~~DAH~D~~~~ 144 (293)
|.+..+ .++.|..+.++-+ + .++|||||.=- .+.-.++... ....+..||+|+-.++...
T Consensus 61 GmtP~d----F~~~V~~iA~~~g-f~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~cagd 135 (426)
T PRK15458 61 GMTPAD----FRGFVCQLADSLN-FPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFKKIHLDCSMSCADD 135 (426)
T ss_pred CCCHHH----HHHHHHHHHHHcC-CChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCCCCCC
Confidence 345544 4444544444432 3 47999999754 2223333321 1246889999999987654
Q ss_pred CCCCccCcccHHHHH
Q 022685 145 FEGNKYSHASSFARI 159 (293)
Q Consensus 145 ~~g~~~~~g~~~~~~ 159 (293)
. ..++-.....|+
T Consensus 136 p--~pL~d~~vA~Ra 148 (426)
T PRK15458 136 P--IPLTDEIVAERA 148 (426)
T ss_pred C--CCCChHHHHHHH
Confidence 3 223344444443
No 46
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=21.57 E-value=1e+02 Score=27.78 Aligned_cols=29 Identities=31% Similarity=0.618 Sum_probs=20.1
Q ss_pred eEEEEEeccccCCCCCCCCCCC---CCCCCCHHHHHH
Q 022685 215 GVYISVDVDCLDPAFAPGVSHI---EPGGLSFRDVLN 248 (293)
Q Consensus 215 ~vyvsiDiDvldps~~pg~~~p---~pgGlt~~el~~ 248 (293)
+||||.||..+. |+..| .|++..+++..+
T Consensus 2 KiyISaDmEGia-----Gv~~~~~~~~~~~~Y~r~r~ 33 (266)
T cd08663 2 KIYISADMEGVT-----GVVSPEQVRPGGREYERARR 33 (266)
T ss_pred eEEEEecCCCCC-----CCCCHHHhCCCchHHHHHHH
Confidence 699999999875 55555 467666654444
No 47
>PRK03094 hypothetical protein; Provisional
Probab=21.39 E-value=3.3e+02 Score=19.81 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=43.9
Q ss_pred EcccCCChhhHHHHHhcCceEEecccccchHHHHHHhhccCCcce-EEEEEeccccCCCCCCCCCCC--CCCCCCHHHHH
Q 022685 171 VGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKG-VYISVDVDCLDPAFAPGVSHI--EPGGLSFRDVL 247 (293)
Q Consensus 171 iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-vyvsiDiDvldps~~pg~~~p--~pgGlt~~el~ 247 (293)
||+-.....-.+.+++.|.+++.+..-... .+++. ||=-.|-|++--+.. .+..| ...|+|.+|++
T Consensus 4 IaVE~~Ls~i~~~L~~~GYeVv~l~~~~~~----------~~~Da~VitG~d~n~mgi~d~-~t~~pVI~A~G~TaeEI~ 72 (80)
T PRK03094 4 IGVEQSLTDVQQALKQKGYEVVQLRSEQDA----------QGCDCCVVTGQDSNVMGIADT-STKGSVITASGLTADEIC 72 (80)
T ss_pred EEeecCcHHHHHHHHHCCCEEEecCccccc----------CCcCEEEEeCCCcceeccccc-ccCCcEEEcCCCCHHHHH
Confidence 444443344567888999999887532110 12333 455567777754432 23445 67899999999
Q ss_pred HHHHh
Q 022685 248 NILHN 252 (293)
Q Consensus 248 ~~l~~ 252 (293)
+.++.
T Consensus 73 ~~ve~ 77 (80)
T PRK03094 73 QQVES 77 (80)
T ss_pred HHHHH
Confidence 98863
No 48
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=21.00 E-value=6.8e+02 Score=23.26 Aligned_cols=106 Identities=16% Similarity=0.113 Sum_probs=58.8
Q ss_pred HHHHHhcCCCCcEEEEcccCCChhhHHHHHhcCceEEecccccchHHHHHHhhccCCcceEEEEEeccccCCCCCC-CC-
Q 022685 156 FARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAP-GV- 233 (293)
Q Consensus 156 ~~~~~~~~~~~~~v~iG~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vyvsiDiDvldps~~p-g~- 233 (293)
+..+.+.+...+++..|. ...+++.+.+.+.|+..+..+.+.....+.+........-+|+|-+|.+.-...... ++
T Consensus 60 ~~~~~~~~~~~~I~~~gp-~k~~~~l~~a~~~gi~~i~vds~~el~~l~~~a~~~~~~~~v~lRi~~~~~~~~~~~~~~~ 138 (377)
T cd06843 60 IAHVRAAVPDAPLIFGGP-GKTDSELAQALAQGVERIHVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMG 138 (377)
T ss_pred HHHHHhcCCCCeEEEeCC-CCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCcceecC
Confidence 344444444567777664 345677777778888666554443322222211111122468888887653222111 11
Q ss_pred CCCCCCCCCHHHHHHHHHhhc--C--CeeEEEE
Q 022685 234 SHIEPGGLSFRDVLNILHNLQ--A--DVVAADV 262 (293)
Q Consensus 234 ~~p~pgGlt~~el~~~l~~i~--~--~vvg~Di 262 (293)
+.+...|+++.|+.++++.+. . ++.|+-.
T Consensus 139 ~~~srfG~~~~~~~~~~~~~~~~~~l~~~Glh~ 171 (377)
T cd06843 139 GQPTPFGIDEADLPDALELLRDLPNIRLRGFHF 171 (377)
T ss_pred CCCCCCCcCHHHHHHHHHHHHhCCCccEEEEEE
Confidence 234678999999999888773 2 5666644
No 49
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=20.88 E-value=1.2e+02 Score=27.29 Aligned_cols=29 Identities=31% Similarity=0.613 Sum_probs=19.5
Q ss_pred eEEEEEeccccCCCCCCCCCCC---CCCCCCHHHHHH
Q 022685 215 GVYISVDVDCLDPAFAPGVSHI---EPGGLSFRDVLN 248 (293)
Q Consensus 215 ~vyvsiDiDvldps~~pg~~~p---~pgGlt~~el~~ 248 (293)
+||||.||..+. |+..| .|++..+++.++
T Consensus 2 KiyISaDiEGia-----GV~~~~~~~~~~~~Y~r~r~ 33 (263)
T cd08770 2 KVYISADIEGIA-----GISSWDETTLGGPDYEEFRE 33 (263)
T ss_pred eEEEEeCCCCCC-----CCCChHHcCCCCchHHHHHH
Confidence 699999999876 55555 456665644333
No 50
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=20.45 E-value=2e+02 Score=23.09 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCccEEeCCCCCCcHHHHHHHHHHcCCCEEEEEEccCCCC
Q 022685 92 ESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDI 141 (293)
Q Consensus 92 ~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~~~~i~vI~~DAH~D~ 141 (293)
+.+..++... ...|.+||.....-.....+.+. --+||+|+.++.
T Consensus 53 ~~l~~l~~~~-~~VIa~GGG~~~~~~~~~~L~~~----g~vI~L~~~~~~ 97 (158)
T PF01202_consen 53 EALRELLKEN-NCVIACGGGIVLKEENRELLKEN----GLVIYLDADPEE 97 (158)
T ss_dssp HHHHHHHCSS-SEEEEE-TTGGGSHHHHHHHHHH----SEEEEEE--HHH
T ss_pred HHHHHHhccC-cEEEeCCCCCcCcHHHHHHHHhC----CEEEEEeCCHHH
Confidence 3344455443 46788898877777666666532 238999877654
No 51
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=20.31 E-value=2.5e+02 Score=24.08 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=7.5
Q ss_pred EEeCCCCCCcHHHHHHHH
Q 022685 106 LVLGGDHSISFPVIRAVS 123 (293)
Q Consensus 106 i~lGGdhsit~~~~~~~~ 123 (293)
.++..+-.++.++++++.
T Consensus 180 ai~~~~d~~a~g~~~~l~ 197 (268)
T cd06270 180 AVFCANDEMAAGAISALR 197 (268)
T ss_pred EEEEcCcHHHHHHHHHHH
Confidence 333333334444444443
No 52
>PLN02840 tRNA dimethylallyltransferase
Probab=20.23 E-value=1.3e+02 Score=29.03 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHH
Q 022685 82 DDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAV 122 (293)
Q Consensus 82 ~~~~~~~~i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~ 122 (293)
+...-.+...+.++.++.++ ..||+.||-+.---+.+.++
T Consensus 91 Sv~~F~~~A~~~I~~i~~rg-kiPIvVGGTGlYl~aLl~G~ 130 (421)
T PLN02840 91 SVGAFFDDARRATQDILNRG-RVPIVAGGTGLYLRWYIYGK 130 (421)
T ss_pred eHHHHHHHHHHHHHHHHhcC-CCEEEEcCccHHHHHHhcCC
Confidence 55666677788888888877 78999999776555544443
No 53
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=20.14 E-value=1.3e+02 Score=27.54 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEeCCCCCCcHHHHHHH
Q 022685 82 DDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAV 122 (293)
Q Consensus 82 ~~~~~~~~i~~~v~~~~~~~~~~pi~lGGdhsit~~~~~~~ 122 (293)
+...-.+...+.++.+..++ ..||+.||-+.---+.+.++
T Consensus 73 sv~~f~~~a~~~i~~i~~~g-k~PilvGGTglYi~all~gl 112 (300)
T PRK14729 73 NLGIFYKEALKIIKELRQQK-KIPIFVGGSAFYFKHLKYGL 112 (300)
T ss_pred eHHHHHHHHHHHHHHHHHCC-CCEEEEeCchHHHHHHHcCC
Confidence 55566666777777777776 78999999876655555443
No 54
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=20.12 E-value=3.4e+02 Score=22.78 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHH-HHHhcCCCccEEeCCCCCCcHHHHHHHHHHcCCCEEEEEEccCCCC
Q 022685 84 DRLMNVITESVK-LVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDI 141 (293)
Q Consensus 84 ~~~~~~i~~~v~-~~~~~~~~~pi~lGGdhsit~~~~~~~~~~~~~~i~vI~~DAH~D~ 141 (293)
|+.++.++..+- .++..+ ...|..||.=-++-...+.+.++ + -+||+||-++.
T Consensus 54 E~~FR~~E~~vl~~l~~~~-~~ViaTGGG~v~~~enr~~l~~~--g--~vv~L~~~~e~ 107 (172)
T COG0703 54 EEGFRRLETEVLKELLEED-NAVIATGGGAVLSEENRNLLKKR--G--IVVYLDAPFET 107 (172)
T ss_pred HHHHHHHHHHHHHHHhhcC-CeEEECCCccccCHHHHHHHHhC--C--eEEEEeCCHHH
Confidence 455666655544 444444 46788888888888888888754 1 48999987654
Done!