RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 022685
(293 letters)
>gnl|CDD|178224 PLN02615, PLN02615, arginase.
Length = 338
Score = 619 bits (1597), Expect = 0.0
Identities = 274/293 (93%), Positives = 286/293 (97%)
Query: 1 MQGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELN 60
++GELVRALGGA AS+ LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELN
Sbjct: 46 LKGELVRALGGAKASSCLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELN 105
Query: 61 DPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIR 120
DPRVLTDVGDVPVQEIRDCGVDDDRLMNVI+ESVKLVMEE+PL PLVLGGDHSIS+PV+R
Sbjct: 106 DPRVLTDVGDVPVQEIRDCGVDDDRLMNVISESVKLVMEEEPLRPLVLGGDHSISYPVVR 165
Query: 121 AVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEG 180
AVSEKLGGPVD+LHLDAHPDIY AFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEG
Sbjct: 166 AVSEKLGGPVDILHLDAHPDIYHAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEG 225
Query: 181 REQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGG 240
REQGKRFGVEQYEMRTFS+DR+ LENLKLGEGVKGVYIS+DVDCLDPAFAPGVSHIEPGG
Sbjct: 226 REQGKRFGVEQYEMRTFSKDREKLENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGG 285
Query: 241 LSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293
LSFRDVLNILHNLQ DVV ADVVEFNPQRDTVDGMTAMVAAKLVRELTAK+SK
Sbjct: 286 LSFRDVLNILHNLQGDVVGADVVEFNPQRDTVDGMTAMVAAKLVRELTAKMSK 338
>gnl|CDD|212539 cd11593, Agmatinase-like_2, Agmatinase and related proteins. This
family includes known and predicted bacterial and
archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB;
EC=3.5.3.11), a binuclear manganese metalloenzyme that
belongs to the ureohydrolase superfamily. It is a key
enzyme in the synthesis of polyamine putrescine; it
catalyzes hydrolysis of agmatine to yield urea and
putrescine, the precursor for biosynthesis of higher
polyamines, spermidine, and spermine. As compared to E.
coli where two paths to putrescine exist, via
decarboxylation of an amino acid, ornithine or arginine,
a single path is found in Bacillus subtilis, where
polyamine synthesis starts with agmatine; the speE and
speB encode spermidine synthase and agmatinase,
respectively. The level of agmatinase synthesis is very
low, allowing strict control on the synthesis of
putrescine and therefore, of all polyamines, consistent
with polyamine levels in the cell. This subfamily
belongs to the ureohydrolase superfamily, which includes
arginase, agmatinase, proclavaminate amidinohydrolase,
and formiminoglutamase.
Length = 263
Score = 300 bits (770), Expect = e-102
Identities = 117/273 (42%), Positives = 162/273 (59%), Gaps = 16/273 (5%)
Query: 18 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR 77
+LGVP S+ G F P IREA + S + ++L D D+GD+ +
Sbjct: 3 ILGVPYDGTVSYRPGTRFGPAAIREASYQLELYSPYLD-RDLEDIPF-YDLGDLTLPPG- 59
Query: 78 DCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDA 137
D ++++ I E+VK ++++ P+VLGG+HSI+ +RA++EK + VLH DA
Sbjct: 60 ----DPEKVLERIEEAVKELLDDGKF-PIVLGGEHSITLGAVRALAEKYP-DLGVLHFDA 113
Query: 138 HPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTF 197
H D+ D +EG+KYSHA RI+E G +RL+QVGIRS +KE E K GV Y F
Sbjct: 114 HADLRDEYEGSKYSHACVMRRILELGGVKRLVQVGIRSGSKEEFEFAKEKGVRIYTFDDF 173
Query: 198 SRDRQFLENLK-LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA- 255
R E +K L E K VYIS+D+D LDPAFAPG EPGGLS+R++L++L L
Sbjct: 174 DLGRWLDELIKVLPE--KPVYISIDIDVLDPAFAPGTGTPEPGGLSWRELLDLLRALAES 231
Query: 256 -DVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 287
++V DVVE +P D G+TA +AAKLV EL
Sbjct: 232 KNIVGFDVVELSPDYDG--GVTAFLAAKLVYEL 262
>gnl|CDD|215946 pfam00491, Arginase, Arginase family.
Length = 268
Score = 250 bits (642), Expect = 3e-83
Identities = 114/279 (40%), Positives = 152/279 (54%), Gaps = 18/279 (6%)
Query: 14 ASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPV 73
A +++GVP +S G F P IREA S N E EL+ + D+GDV V
Sbjct: 1 ADVAIIGVPFDGGTSGRPGARFGPDAIREA----SANLELYELYELSLGLKVVDLGDVAV 56
Query: 74 QEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVL 133
D + ++ I E+V ++ PLVLGGDHSI+ +RA++ G P+ V+
Sbjct: 57 ------PPDPEDVLERIEEAVAAILAAGKF-PLVLGGDHSITLGALRALARAYGPPLGVI 109
Query: 134 HLDAHPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRSITKEGREQGKRFGVEQ 191
H DAH D+ D + G+ YSH + F R +E G R++Q+GIRS+ E E K GV
Sbjct: 110 HFDAHADLRDPYTGSGYSHGTPFRRALEEGLLDPERVVQIGIRSVDNEEYEYAKELGVRV 169
Query: 192 YEMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNI 249
+ MR LE + G VY+S D+D LDPAFAPG EPGGL+ R++L I
Sbjct: 170 FTMRDIDERGLAAVLEEILEALGGTPVYLSFDIDVLDPAFAPGTGTPEPGGLTPRELLAI 229
Query: 250 LHNLQA-DVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 287
L L +VV DVVE NP D G+TA +AAKLVREL
Sbjct: 230 LRGLAGLNVVGLDVVEVNPPYDV--GITARLAAKLVREL 266
>gnl|CDD|212516 cd09990, Agmatinase-like, Agmatinase-like family. Agmatinase
subfamily currently includes metalloenzymes such as
agmatinase, guanidinobutyrase, guanidopropionase,
formimidoylglutamase and proclavaminate
amidinohydrolase. Agmatinase (agmatine ureohydrolase;
SpeB; EC=3.5.3.11) is the key enzyme in the synthesis of
polyamine putrescine; it catalyzes hydrolysis of
agmatine to yield putrescine and urea. This enzyme has
been found in bacteria, archaea and eukaryotes,
requiring divalent Mn and sometimes Zn, Co or Ca for
activity. In mammals, the highest level of agmatinase
mRNA was found in liver and kidney. However, catabolism
of agmatine via agmatinase apparently is a not major
path; it is mostly catabolized via diamine oxidase.
Agmatinase has been shown to be down-regulated in tumor
renal cells. Guanidinobutyrase (Gbh, EC=3.5.3.7)
catalyzes hydrolysis of 4-guanidinobutanoate to yield
4-aminobutanoate and urea in arginine degradation
pathway. Activity has been shown for purified enzyme
from Arthrobacter sp. KUJ 8602. Additionally,
guanidinobutyrase is able to hydrolyze D-arginine,
3-guanidinopropionate, 5-guanidinovaleriate and
L-arginine with much less affinity, having divalent Zn
ions for catalysis. Proclavaminate amidinohydrolase
(Pah, EC 3.5.3.22) hydrolyzes amidinoproclavaminate to
yield proclavaminate and urea in clavulanic acid
biosynthesis. Activity has been shown for purified
enzyme from Streptomyces clavuligerus. Clavulanic acid
is the effective inhibitor of beta-lactamases. This acid
is used in combination with the penicillin amoxicillin
to prevent antibiotic's beta-lactam rings from
hydrolysis, thus keeping the antibiotics biologically
active.
Length = 275
Score = 248 bits (635), Expect = 5e-82
Identities = 105/282 (37%), Positives = 147/282 (52%), Gaps = 22/282 (7%)
Query: 18 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR 77
+LGVP S+ G F P IREA ST S + G + D + D GDVPV
Sbjct: 3 VLGVPFDGGSTSRPGARFGPRAIREASAGYSTYSP-DLGVDDFDDLTVVDYGDVPVDP-- 59
Query: 78 DCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDA 137
D ++ + I E+V + E P+VLGGDHSI++P +R ++E+ G V V+H DA
Sbjct: 60 ---GDIEKTFDRIREAVAEIAEAG-AIPIVLGGDHSITYPAVRGLAERHKGKVGVIHFDA 115
Query: 138 HPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRSI--TKEGREQGKRFGVEQYE 193
H D D G + SH + F R++E G ++Q+GIR + E E + GV
Sbjct: 116 HLDTRDTDGGGELSHGTPFRRLLEDGNVDGENIVQIGIRGFWNSPEYVEYAREQGVTVIT 175
Query: 194 MRTFSRD------RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVL 247
MR + LE +G VY+SVD+D LDPAFAPG EPGGL+ R++L
Sbjct: 176 MRDVRERGLDAVIEEALE--IASDGTDAVYVSVDIDVLDPAFAPGTGTPEPGGLTPRELL 233
Query: 248 NILHNLQAD--VVAADVVEFNPQRDTVDGMTAMVAAKLVREL 287
+ + L A+ VV D+VE +P D +TA +AA+ V E
Sbjct: 234 DAVRALGAEAGVVGMDIVEVSPPLDP-TDITARLAARAVLEF 274
>gnl|CDD|223089 COG0010, SpeB, Arginase/agmatinase/formimionoglutamate hydrolase,
arginase family [Amino acid transport and metabolism].
Length = 305
Score = 191 bits (487), Expect = 2e-59
Identities = 98/284 (34%), Positives = 149/284 (52%), Gaps = 24/284 (8%)
Query: 17 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEI 76
+++GVP +S+ G F P IREA + +L + + D+GD+ +
Sbjct: 25 AIIGVPFDGGTSYRPGARFGPDAIREASL--NLEYNVPLDGDLVEALKIADLGDIELN-- 80
Query: 77 RDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLD 136
G D + ++ I E+V ++ P+VLGGDHSI+ +RA++ K GGP+ V+ +D
Sbjct: 81 ---GGDLEDAVDAIEEAVAELLSAGAF-PIVLGGDHSITLGTVRALARKYGGPLGVIWID 136
Query: 137 AHPDIYDAFEGNKYSHASSFARIMEGGY----ARRLLQVGIRSITK-EGREQGKRFGVEQ 191
AH D+ + G+ SH + R +E G ++Q+GIRS+ E + G+
Sbjct: 137 AHADLRTPYSGSGNSHGTPLRRALEEGLIDGGPENVVQIGIRSVDPEERAAVARERGIRV 196
Query: 192 YEMRTFSRDRQFLENL------KLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRD 245
R D L ++ +L VY+S+D+D LDPAFAPGV EPGGL+FR+
Sbjct: 197 LTARDV--DELGLVDVIEEAIDELKGDGDPVYLSIDLDVLDPAFAPGVGTPEPGGLTFRE 254
Query: 246 VLNILHNL--QADVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 287
+L++L L VV DVVE NP D G TA +AA+L+ EL
Sbjct: 255 LLDLLERLLKSGKVVGFDVVEVNPALDI-SGRTARLAARLIAEL 297
>gnl|CDD|212537 cd11589, Agmatinase_like_1, Agmatinase and related proteins. This
family includes known and predicted bacterial agmatinase
(agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a
binuclear manganese metalloenzyme, belonging to the
ureohydrolase superfamily. It is a key enzyme in the
synthesis of polyamine putrescine; it catalyzes
hydrolysis of agmatine to yield urea and putrescine, the
precursor for biosynthesis of higher polyamines,
spermidine, and spermine. Agmatinase from Deinococcus
radiodurans shows approximately 33% of sequence identity
to human mitochondrial agmatinase. An analysis of the
evolutionary relationship among ureohydrolase
superfamily enzymes indicates the pathway involving
arginine decarboxylase and agmatinase evolved earlier
than the arginase pathway of polyamine.
Length = 274
Score = 170 bits (434), Expect = 7e-52
Identities = 93/288 (32%), Positives = 138/288 (47%), Gaps = 36/288 (12%)
Query: 18 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNST---------TEEGKELNDPRVLTDV 68
+LGVP F G FAP IREA ST L D + D
Sbjct: 3 VLGVPYDMGYPFRSGARFAPRAIREA----STRFARGIGGYDDDDGGLLFLGDGVRIVDC 58
Query: 69 GDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGG 128
GDV + D I E+V+ ++ + P+VLGGDHS++ PV+RA+ E G
Sbjct: 59 GDVDIDP-----TDPAGNFANIEEAVRKILARGAV-PVVLGGDHSVTIPVLRALDEH--G 110
Query: 129 PVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSIT-------KEGR 181
P+ V+ +DAH D D G +Y ++S R E + R+ Q+GIR + + R
Sbjct: 111 PIHVVQIDAHLDWRDEVNGVRYGNSSPMRRASEMPHVGRITQIGIRGLGSARPEDFDDAR 170
Query: 182 EQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGL 241
G + E+ + L+ + GE YI++D+D LDP+ APGV PGGL
Sbjct: 171 AYGSVI-ITAREVHRIGIEA-VLDQIPDGE---NYYITIDIDGLDPSIAPGVGSPSPGGL 225
Query: 242 SFRDVLNILHNL--QADVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 287
++ V ++LH L + VV D+VE P D G+T+++AA+L+
Sbjct: 226 TYDQVRDLLHGLAKKGRVVGFDLVEVAPAYD-PSGITSILAARLLLNF 272
>gnl|CDD|212538 cd11592, Agmatinase_PAH, Agmatinase-like family includes
proclavaminic acid amidinohydrolase. This agmatinase
subfamily contains bacterial and fungal/metazoan
enzymes, including proclavaminic acid amidinohydrolase
(PAH, EC 3.5.3.22) and Pseudomonas aeruginosa
guanidinobutyrase (GbuA) and guanidinopropionase (GpuA).
PAH hydrolyzes amidinoproclavaminate to yield
proclavaminate and urea in clavulanic acid biosynthesis.
Clavulanic acid is an effective inhibitor of
beta-lactamases and is used in combination with
amoxicillin to prevent the beta-lactam rings of the
antibiotic from hydrolysis and, thus keeping the
antibiotic biologically active. GbuA hydrolyzes
4-guanidinobutyrate (4-GB) into 4-aminobutyrate and urea
while GpuA hydrolyzes 3-guanidinopropionate (3-GP) into
beta-alanine and urea. Mutation studies show that
significant variations in two active site loops in these
two enzymes may be important for substrate specificity.
This subfamily belongs to the ureohydrolase superfamily,
which includes arginase, agmatinase, proclavaminate
amidinohydrolase, and formiminoglutamase.
Length = 289
Score = 170 bits (433), Expect = 2e-51
Identities = 98/280 (35%), Positives = 144/280 (51%), Gaps = 22/280 (7%)
Query: 18 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR 77
++GVP S+ G F P IR+A + + +V+ D GDVPV
Sbjct: 21 VVGVPFDTGVSYRPGARFGPRAIRQASRLLRPYNPATGVDPFDWLKVV-DCGDVPVT--- 76
Query: 78 DCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDA 137
D + + I E+ + ++ P PL LGGDHSI+ P++RA+++K G PV ++H DA
Sbjct: 77 --PGDIEDALEQIEEAYRAILAAGP-RPLTLGGDHSITLPILRALAKKHG-PVALVHFDA 132
Query: 138 HPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRS--ITKEGREQGKRFGVEQYE 193
H D +D + G KY+H + F R +E G +R +Q+GIR + + E + G
Sbjct: 133 HLDTWDPYFGEKYNHGTPFRRAVEEGLLDPKRSIQIGIRGSLYSPDDLEDDRDLGFRVIT 192
Query: 194 MRTFSRDRQFLENLK-----LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLN 248
D ++ +G+G VY+S D+D LDPAFAPG E GGL+ R+ L
Sbjct: 193 ADEV-DDIGLDAIIEKIRERVGDG--PVYLSFDIDVLDPAFAPGTGTPEIGGLTSREALE 249
Query: 249 ILHNLQ-ADVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 287
IL L ++V ADVVE +P D +TA+ AA L EL
Sbjct: 250 ILRGLAGLNIVGADVVEVSPPYDHA-EITALAAANLAFEL 288
>gnl|CDD|233323 TIGR01230, agmatinase, agmatinase. Members of this family include
known and predicted examples of agmatinase (agmatine
ureohydrolase). The seed includes members of archaea,
for which no definitive agmatinase sequence has yet been
made available. However, archaeal sequences are
phylogenetically close to the experimentally verified B.
subtilis sequence. One species of Halobacterium has been
demonstrated in vitro to produce agmatine from arginine,
but no putrescine from ornithine, suggesting that
arginine decarboxylase and agmatinase, rather than
arginase and ornithine decarboxylase, lead from Arg to
polyamine biosynthesis. Note: a history of early
misannotation of members of this family is detailed in
PUBMED:10931887.
Length = 275
Score = 155 bits (394), Expect = 6e-46
Identities = 92/276 (33%), Positives = 136/276 (49%), Gaps = 26/276 (9%)
Query: 18 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR 77
+ G+P +S+ G P IREA W E R+ D+ + V +
Sbjct: 17 IYGIPYDATTSYRPGSRHGPNAIREASW----------NLEWYSNRLDRDLAMLNVVDAG 66
Query: 78 D---CGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLH 134
D D + I E + +EE P+ +GG+HSI+ PVIRA+++K G V+H
Sbjct: 67 DLPLAFGDAREMFEKIQEHAEEFLEEGKF-PVAIGGEHSITLPVIRAMAKKFG-KFAVVH 124
Query: 135 LDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEM 194
DAH D+ D F+G +HA R++E G ++Q GIRS KE F E +
Sbjct: 125 FDAHTDLRDEFDGGTLNHACPMRRVIELG--LNVVQFGIRSGFKEE----NDFAREN-NI 177
Query: 195 RTFSRDRQFLENLKLGE-GVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNL 253
+ R+ + + G K VY+++D+D LDPAFAPG EPGGL+ +++N
Sbjct: 178 QVLKREVDDVIAEVKQKVGDKPVYVTIDIDVLDPAFAPGTGTPEPGGLTSDELINFFVRA 237
Query: 254 QAD--VVAADVVEFNPQRDTVDGMTAMVAAKLVREL 287
D VV DVVE P D + +TA+ AAK+ E+
Sbjct: 238 LKDDNVVGFDVVEVAPVYDQSE-VTALTAAKIALEM 272
>gnl|CDD|212511 cd09015, Ureohydrolase, Ureohydrolase superfamily includes
arginase, formiminoglutamase, agmatinase and
proclavaminate amidinohydrolase (PAH). This family,
also known as arginase-like amidino hydrolase family,
includes Mn-dependent enzymes: arginase (Arg, EC
3.5.3.1), formimidoylglutamase (HutG, EC 3.5.3.8 ),
agmatinase (SpeB, EC 3.5.3.11), guanidinobutyrase (Gbh,
EC=3.5.3.7), proclavaminate amidinohydrolase (PAH, EC
3.5.3.22) and related proteins. These enzymes catalyze
hydrolysis of amide bond. They are involved in control
of cellular levels of arginine and ornithine (both
involved in protein biosynthesis, and production of
creatine, polyamines, proline and nitric acid), in
histidine and arginine degradation, and in clavulanic
acid biosynthesis.
Length = 270
Score = 128 bits (323), Expect = 1e-35
Identities = 88/282 (31%), Positives = 134/282 (47%), Gaps = 23/282 (8%)
Query: 17 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNS---TTEEGKELNDPRVLTDVGDVPV 73
+++G P G F P IR+A T GK + + D GD+ +
Sbjct: 1 AIIGFPYDAGCEGRPGAKFGPSAIRQA----LLRLALVFTGLGKTRHHHINIYDAGDIRL 56
Query: 74 QEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVL 133
E + ++L +V+ + +K P+VLGGDHSI+ +RAV+ + V+
Sbjct: 57 -EGDELEEAHEKLASVVQQVLK-----RGAFPVVLGGDHSIAIATLRAVARH-HPDLGVI 109
Query: 134 HLDAHPDIYDAFEGNKYSHASSFARIME--GGYARRLLQVGIRSI--TKEGREQGKRFGV 189
+LDAH D+ + S + F +++E + ++ +G+R + E ++ GV
Sbjct: 110 NLDAHLDVNTPETDGRNSSGTPFRQLLEELQQSPKHIVCIGVRGLDPGPALFEYARKLGV 169
Query: 190 EQYEMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVL 247
+ M + LE L + VY+SVDVD LDPA APGVS GGLS+R+ L
Sbjct: 170 KYVTMDEVDKLGLGGVLEQLFHYDDGDNVYLSVDVDGLDPADAPGVSTPAAGGLSYREGL 229
Query: 248 NILHNLQAD--VVAADVVEFNPQRDTVDGMTAMVAAKLVREL 287
IL V+ AD+VE NP D DG TA +A +L EL
Sbjct: 230 PILERAGKTKKVMGADIVEVNPLLD-EDGRTARLAVRLCWEL 270
>gnl|CDD|234974 PRK01722, PRK01722, formimidoylglutamase; Provisional.
Length = 320
Score = 125 bits (315), Expect = 8e-34
Identities = 76/282 (26%), Positives = 121/282 (42%), Gaps = 42/282 (14%)
Query: 20 GVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDC 79
GVP S G +FAP IR A+ ++++ E L D+GD+ C
Sbjct: 53 GVPRNKGRS---GASFAPDAIRRALANMASHAGHER---------LYDLGDI------TC 94
Query: 80 GVDD-----DRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGP-VDVL 133
V D L + + ++ M +VLGG H I+F V++ V ++
Sbjct: 95 HVTDLEEAQQALADTVGHCLRPNMR-----TIVLGGGHEIAFGSFAGVADAFPKGKVGII 149
Query: 134 HLDAHPDIYDAFEGNKYSHASSFARIMEG----GYARRLLQVGIR--SITKEGREQGKRF 187
+ DAH D+ + E S + F +++E +G+ S T+ E+ K
Sbjct: 150 NFDAHHDLRN-LEDGGPSSGTPFRQLLEYCDAQIRGFHYACIGVSRASNTQALWEEAKEL 208
Query: 188 GVEQYEMRTFSR---DRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFR 244
GV E + + V +Y+++D+D L A APGVS GG+
Sbjct: 209 GVTVVTDLDVRERGLKDILTELQEFIDQVDYIYLTIDLDVLPAAEAPGVSAPAAGGVPLE 268
Query: 245 DVLNILHNL--QADVVAADVVEFNPQRDTVDGMTAMVAAKLV 284
+L + + + AAD+VE+NP D D MTA VAA+L+
Sbjct: 269 TLLRAIEPICRSGKLQAADLVEYNPTFD-FDDMTARVAARLI 309
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases.
Arginase-like/histone-like hydrolase superfamily
includes metal-dependent enzymes that belong to
Arginase-like amidino hydrolase family and
histone/histone-like deacetylase class I, II, IV family,
respectively. These enzymes catalyze hydrolysis of amide
bond. Arginases are known to be involved in control of
cellular levels of arginine and ornithine, in histidine
and arginine degradation and in clavulanic acid
biosynthesis. Deacetylases play a role in signal
transduction through histone and/or other protein
modification and can repress/activate transcription of a
number of different genes. They participate in different
cellular processes including cell cycle regulation, DNA
damage response, embryonic development, cytokine
signaling important for immune response and
post-translational control of the acetyl coenzyme A
synthetase. Mammalian histone deacetyases are known to
be involved in progression of different tumors. Specific
inhibitors of mammalian histone deacetylases are an
emerging class of promising novel anticancer drugs.
Length = 217
Score = 120 bits (303), Expect = 4e-33
Identities = 71/192 (36%), Positives = 97/192 (50%), Gaps = 11/192 (5%)
Query: 105 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG-G 163
P+VLGGDHSI+ IRAV+E L + V+ +DAH D+ K +H + + E
Sbjct: 28 PVVLGGDHSIANGAIRAVAE-LHPDLGVIDVDAHHDVRTPEAFGKGNHHTPRHLLCEPLI 86
Query: 164 YARRLLQVGIRSITKEG-REQGKRF-GVEQYEMRTFSRDR--QFLENL--KLGEGVKGVY 217
++ +GIR ++ R GV + M + E + LG+ VY
Sbjct: 87 SDVHIVSIGIRGVSNGEAGGAYARKLGVVYFSMTEVDKLGLGDVFEEIVSYLGDKGDNVY 146
Query: 218 ISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNL--QADVVAADVVEFNPQRDTVDGM 275
+SVDVD LDP+FAPG PGGLS+R+ L I + VV D+VE NP D G
Sbjct: 147 LSVDVDGLDPSFAPGTGTPGPGGLSYREGLYITERIAKTNLVVGLDIVEVNPLLDE-TGR 205
Query: 276 TAMVAAKLVREL 287
TA +AA L EL
Sbjct: 206 TARLAAALTLEL 217
>gnl|CDD|212515 cd09989, Arginase, Arginase family. This family includes arginase,
also known as arginase-like amidino hydrolase family,
and related proteins. Arginase is a binuclear
Mn-dependent metalloenzyme and catalyzes hydrolysis of
L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1),
the reaction being the fifth and final step in the urea
cycle, providing the path for the disposal of
nitrogenous compounds. Arginase controls cellular levels
of arginine and ornithine which are involved in protein
biosynthesis, and in production of creatine, polyamines,
proline and nitric acid. In vertebrates, at least two
isozymes have been identified: type I (ARG1) cytoplasmic
or hepatic liver-type arginase and type II (ARG2)
mitochondrial or non-hepatic arginase. Point mutations
in human arginase ARG1 gene lead to hyperargininemia
with consequent mental disorders, retarded development
and early death. Hyperargininemia is associated with a
several-fold increase in the activity of the
mitochondrial arginase (ARG2), causing persistent
ureagenesis in patients. ARG2 overexpression plays a
critical role in the pathophysiology of cholesterol
mediated endothelial dysfunction. Thus, arginase is a
therapeutic target to treat asthma, erectile
dysfunction, atherosclerosis and cancer.
Length = 290
Score = 115 bits (291), Expect = 1e-30
Identities = 86/308 (27%), Positives = 129/308 (41%), Gaps = 52/308 (16%)
Query: 17 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEI 76
S++GVP + +G P +REA G E G ++ D +GD+ V
Sbjct: 2 SIIGVPFDLGAG-KRGVELGPEALREA---GLLERLEELGHDVED------LGDLLVPNP 51
Query: 77 RDCGVDDDRLMNV---------ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG 127
+ + N+ + E+V +EE PLVLGGDHSI+ I V+
Sbjct: 52 EEESPFNGNAKNLDEVLEANEKLAEAVAEALEEGRF-PLVLGGDHSIAIGTIAGVARAPY 110
Query: 128 GPVDVLHLDAHPDI---YDAFEGN----------KYSHASSFARIMEGGY---ARRLLQV 171
+ V+ +DAH DI + GN H I G L+ +
Sbjct: 111 PDLGVIWIDAHADINTPETSPSGNIHGMPLAALLGEGHPE-LTNIGGVGPKLKPENLVYI 169
Query: 172 GIRSITKEGREQGKRFGVEQYEMRTFSRD------RQFLENLKLGEGVKGVYISVDVDCL 225
G+R + RE K+ G++ + M + LE L G G+++S DVD L
Sbjct: 170 GLRDLDPGERELIKKLGIKVFTMDEIDERGIGAVMEEALE--YLKPGTDGIHVSFDVDVL 227
Query: 226 DPAFAPGVSHIEPGGLSFRDVLNILHNLQAD--VVAADVVEFNPQRDTVDGMTAMVAAKL 283
DP+ APG PGGL++R+ +L L +V+ D+VE NP D + A+L
Sbjct: 228 DPSIAPGTGTPVPGGLTYREAHLLLEELAETGRLVSLDIVEVNPLLDKENRT-----AEL 282
Query: 284 VRELTAKI 291
EL A
Sbjct: 283 AVELIASA 290
>gnl|CDD|235011 PRK02190, PRK02190, agmatinase; Provisional.
Length = 301
Score = 111 bits (280), Expect = 7e-29
Identities = 61/189 (32%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 104 HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGG 163
L LGGDH I+ P++RA ++ G P+ ++H DAH D + G++ H + F + G
Sbjct: 112 RMLTLGGDHFITLPLLRAHAKHFG-PLALVHFDAHTDTWAD-GGSRIDHGTMFYHAPKEG 169
Query: 164 Y--ARRLLQVGIRSITKEGREQGKRF--GVEQYEMRTFSRDRQFLENLKLGEGVKGVYIS 219
+Q+GIR+ + + G + + + +K G VY++
Sbjct: 170 LIDPAHSVQIGIRTEYDK--DNGFTVLDARQVNDRGV----DAIIAQIKQIVGDMPVYLT 223
Query: 220 VDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA-DVVAADVVEFNPQRDTVDGMTAM 278
D+DCLDPAFAPG GGL+ L IL L+ ++V DVVE P D + +TA+
Sbjct: 224 FDIDCLDPAFAPGTGTPVIGGLTSAQALKILRGLKGLNIVGMDVVEVAPAYDHAE-ITAL 282
Query: 279 VAAKLVREL 287
AA L E+
Sbjct: 283 AAATLALEM 291
>gnl|CDD|212523 cd09999, Arginase-like_1, Arginase-like amidino hydrolase family.
This family includes arginase, also known as
arginase-like amidino hydrolase family, as well as
arginase-like proteins and are found in bacteria,
archaea and eykaryotes, but does not include metazoan
arginases. Arginase is a binuclear Mn-dependent
metalloenzyme and catalyzes hydrolysis of L-arginine to
L-ornithine and urea (Arg, EC 3.5.3.1), the reaction
being the fifth and final step in the urea cycle,
providing the path for the disposal of nitrogenous
compounds. Arginase controls cellular levels of arginine
and ornithine which are involved in protein
biosynthesis, and in production of creatine, polyamines,
proline and nitric acid.
Length = 272
Score = 102 bits (257), Expect = 8e-26
Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 28/249 (11%)
Query: 62 PRVLTDVGDVPVQE-IRDCGVDD-----DRLMNVITESVKLVMEEDPLHPLVLGGDHSIS 115
P + +VPV + L+ + + ++ P P+VLGGD S+S
Sbjct: 30 PESADETVEVPVPPDPAPLDPETGIIGRSALLAQLRAAADIIEAALPDRPVVLGGDCSVS 89
Query: 116 FPVIRAVSEKLGGPVDVLHLDAHPDIYD-AFEGNKYSHA-----------SSFARIMEGG 163
++ K G + +L +DAHPD Y+H I++
Sbjct: 90 LAPFAYLARK-YGDLGLLWIDAHPDFNTPETSPTGYAHGMVLAALLGEGDPELTAIVKPP 148
Query: 164 -YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD-RQFLENLKLGEGVKGVYISVD 221
R++ G+R E E R G+ + + L+ LK EG+ GV+I +D
Sbjct: 149 LSPERVVLAGLRDPDDEEEEFIARLGIRVLRPEGLAASAQAVLDWLK-EEGLSGVWIHLD 207
Query: 222 VDCLDPAFAPGVSHIEPGGLSFRDVLNILHNL--QADVVAADVVEFNPQRDTVDGMTAMV 279
+D LDPA P V EPGGLS +++ +L L AD+V + EF+P D A+
Sbjct: 208 LDVLDPAIFPAVDFPEPGGLSLDELVALLAALAASADLVGLTIAEFDPDLDW----DAIN 263
Query: 280 AAKLVRELT 288
L+ L
Sbjct: 264 LKNLLDALP 272
>gnl|CDD|233322 TIGR01227, hutG, formimidoylglutamase. Formiminoglutamase, the
fourth enzyme of histidine degradation, is similar to
arginases and agmatinases. It is often encoded near
other enzymes of the histidine degredation pathway:
histidine ammonia-lyase, urocanate hydratase, and
imidazolonepropionase [Energy metabolism, Amino acids
and amines].
Length = 307
Score = 100 bits (250), Expect = 1e-24
Identities = 77/285 (27%), Positives = 122/285 (42%), Gaps = 39/285 (13%)
Query: 18 LLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQ 74
L+G PL +G P IR+A+ + + +L D+GD+
Sbjct: 39 LIGFPLDKGVIRNKGRRGARHGPSAIRQAL---------AHLGDWHVSELLYDLGDI--- 86
Query: 75 EIRDCGVDDDRLMNVITESVKLVMEEDPLH--PLVLGGDHSISFPVIRAVSEKLGG--PV 130
DD L + E + H P++LGG HSI++ A+++ G +
Sbjct: 87 ---VIHGDD--LEDTQHEIAQTAAALLADHRVPVILGGGHSIAYATFAALAQHYKGTTAI 141
Query: 131 DVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYA--RRLLQVGIR--SITKEGREQGKR 186
V++ DAH D+ A E + + F +I++ +GIR S T+ + K+
Sbjct: 142 GVINFDAHFDL-RATEDGGPTSGTPFRQILDECQIEDFHYAVLGIRRFSNTQALFDYAKK 200
Query: 187 FGVEQYEMRTFS-----RDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGL 241
GV + L + V +Y++VD+D LD A APGVS PGGL
Sbjct: 201 LGVRYVTDDALRPGLLPTIKDILPVFL--DKVDHIYLTVDMDVLDAAHAPGVSAPAPGGL 258
Query: 242 SFRDVLNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLV 284
++L ++ + A V A++ E NP D D TA AA+LV
Sbjct: 259 YPDELLELVKRIAASDKVRGAEIAEVNPTLDF-DQRTARAAARLV 302
>gnl|CDD|212514 cd09988, Formimidoylglutamase, Formimidoylglutamase or HutE.
Formimidoylglutamase (N-formimidoyl-L-glutamate
formimidoylhydrolase; formiminoglutamase;
N-formiminoglutamate hydrolase; N-formimino-L-glutamate
formiminohydrolase; HutE; EC 3.5.3.8) is a metalloenzyme
that catalyzes hydrolysis of N-formimidoyl-L-glutamate
to L-glutamate and formamide. This enzyme is involved in
histidine degradation, requiring Mn as a cofactor while
glutathione may be required for maximal activity. In
Pseudomonas PAO1, mutation studies show that histidine
degradation proceeds via a 'four-step' pathway if the
'five-step' route is absent and vice versa; in the
four-step pathway, formiminoglutaminase (HutE, EC
3.5.3.8) directly converts formiminoglutamate (FIGLU) to
L-glutamate and formamide in a single step.
Formiminoglutamase has traditionally also been referred
to as HutG; however, formiminoglutamase is structurally
and mechanistically unrelated to N-formyl-glutamate
deformylase (also called HutG). Phylogenetic analysis
has suggested that HutE was acquired by horizontal gene
transfer from a Ralstonia-like ancestor.
Length = 262
Score = 91.0 bits (227), Expect = 1e-21
Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 21/234 (8%)
Query: 60 NDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVI 119
N + D+GD+ G + + E V ++++ + P+V+GG H +++
Sbjct: 38 NWGLKIYDLGDIICD-----GDSLEDTQQALAEVVAELLKKG-IIPIVIGGGHDLAYGHY 91
Query: 120 RAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASS---FARIME--GGYARRLLQVGIR 174
R + + L + +++ DAH D+ S F +I+E +GI+
Sbjct: 92 RGLDKALEKKIGIINFDAHFDL-----RPLEEGRHSGTPFRQILEECPNNLFNYSVLGIQ 146
Query: 175 --SITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPG 232
T+E + K GV +E ++ +Y+S+D+D + + APG
Sbjct: 147 EYYNTQELFDLAKELGVLYFEAERLLGEKILDILEAEPALRDAIYLSIDLDVISSSDAPG 206
Query: 233 VSHIEPGGLSFRDVLNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLV 284
VS P GLS + I V + D+ E NP D D TA +AA L+
Sbjct: 207 VSAPSPNGLSPEEACAIARYAGKSGKVRSFDIAELNPSLDI-DNRTAKLAAYLI 259
>gnl|CDD|162262 TIGR01229, rocF_arginase, arginase. This model helps resolve
arginases from known and putative agmatinases,
formiminoglutamases, and other related proteins of
unknown specifity. The pathway from arginine to the
polyamine putrescine may procede by hydrolysis to remove
urea (arginase) followed by decarboxylation (ornithine
decarboxylase), or by decarboxylation first (arginine
decarboxylase) followed by removal of urea (agmatinase).
Length = 300
Score = 86.3 bits (214), Expect = 1e-19
Identities = 73/230 (31%), Positives = 102/230 (44%), Gaps = 39/230 (16%)
Query: 90 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVS-----EKLGGPVDVLHLDAHPDI--- 141
+ V V EE PLVLGGDHSI+ I + +KLG VL LDAH DI
Sbjct: 72 LAPKVYEVFEEGRF-PLVLGGDHSIAIGTISGTARVHPDKKLG----VLWLDAHADINTP 126
Query: 142 YDAFEGNKYSHASSF--------ARIMEGGY-------ARRLLQVGIRSITKEGREQGKR 186
+ GN + +F G + L+ +G+RS+ R+ K
Sbjct: 127 ETSDSGNIHGMPLAFLLGRLKSEFPDSPGLGWVAPEISPKNLVYIGLRSVDPGERKILKE 186
Query: 187 FGVEQYEMRTFSRD------RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGG 240
G++ + M + LE LK +G +++S+DVD LDP+ AP GG
Sbjct: 187 LGIKVFSMHEIDELGIGKVVEETLEYLKAEDGP--IHLSLDVDGLDPSLAPATGTPVVGG 244
Query: 241 LSFRDVLNILHNL--QADVVAADVVEFNPQRDTVD-GMTAMVAAKLVREL 287
L+FR+ L I+ L + A DVVE NP D T A ++VR L
Sbjct: 245 LTFREGLLIMEMLYESGLLTALDVVEVNPTLDIKHVNETIKTAVEIVRSL 294
>gnl|CDD|212536 cd11587, Arginase-like, Arginase types I and II and arginase-like
family. This family includes arginase, also known as
arginase-like amidino hydrolase family, and related
proteins, found in bacteria, archaea and eykaryotes.
Arginase is a binuclear Mn-dependent metalloenzyme and
catalyzes hydrolysis of L-arginine to L-ornithine and
urea (Arg, EC 3.5.3.1), the reaction being the fifth and
final step in the urea cycle, providing the path for the
disposal of nitrogenous compounds. Arginase controls
cellular levels of arginine and ornithine which are
involved in protein biosynthesis, and in production of
creatine, polyamines, proline and nitric acid. In
vertebrates, at least two isozymes have been identified:
type I cytoplasmic or hepatic liver-type arginase and
type II mitochondrial or non-hepatic arginase. Point
mutations in human arginase gene lead to
hyperargininemia with consequent mental disorders,
retarded development and early death. Arginase is a
therapeutic target to treat asthma, erectile
dysfunction, atherosclerosis and cancer.
Length = 294
Score = 77.5 bits (191), Expect = 1e-16
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 32/209 (15%)
Query: 105 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDA-------FEGNKYSHASSF- 156
LVLGGDHS++ I + ++ + V+ +DAH DI G +
Sbjct: 86 SLVLGGDHSLAIGSI-SGHAQVYPDLGVIWIDAHGDINTPETSPSGNLHGMPLAFLLGEG 144
Query: 157 -ARIMEGGY--------ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENL 207
++ + G+ ++ +G+R + + K G++ Y M F D+ + +
Sbjct: 145 KGKLPDVGFSWVTPLISPENVVYIGLRDVDPGEKYIIKTLGIKYYTM--FEVDKLGIGKV 202
Query: 208 K-------LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNL--QADVV 258
LG + +++S DVD LDP FAP GGLS+R+ L I+ L +
Sbjct: 203 MEETLSYLLGRKKRPIHLSFDVDGLDPVFAPATGTPVVGGLSYREGLLIMEELAETGLLS 262
Query: 259 AADVVEFNPQRDTVD---GMTAMVAAKLV 284
D+VE NP D TA A L
Sbjct: 263 GMDLVEVNPSLDKTPEEVTKTANTAVALT 291
>gnl|CDD|237499 PRK13773, PRK13773, formimidoylglutamase; Provisional.
Length = 324
Score = 70.2 bits (172), Expect = 7e-14
Identities = 72/255 (28%), Positives = 115/255 (45%), Gaps = 41/255 (16%)
Query: 59 LNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLH-PLVLGGDHSISFP 117
L++PR + D G V V D +RL + ++ + D H P+VLGG H +F
Sbjct: 82 LHEPRRVYDAGTVTVPG-GDLEAGQERLGDAVSALL------DAGHLPVVLGGGHETAFG 134
Query: 118 ----VIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIME----GGYARRLL 169
V + + G + +L+LDAH D+ A S + F +I G +
Sbjct: 135 SYLGVAGSERRRPGKRLGILNLDAHFDLRAAPVP---SSGTPFRQIARAEEAAGRTFQYS 191
Query: 170 QVGI------RSITKEGREQGKRFGV-EQYEMRTFSRDRQFLENLKLGEGVKGVYISVDV 222
+GI R++ RE G R+ + E+ ++ + R F+ + V +Y+++D+
Sbjct: 192 VLGISEPNNTRALFDTARELGVRYLLDEECQVMDRAAVRVFVADFL--ADVDVIYLTIDL 249
Query: 223 DCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAA-------DVVEFNPQRDTVDGM 275
D L A APGVS P L ++ + D VAA DV E NP+ D +D
Sbjct: 250 DVLPAAVAPGVS--APAAYGVP--LEVIQAV-CDRVAASGKLALVDVAELNPRFD-IDNR 303
Query: 276 TAMVAAKLVRELTAK 290
TA VAA+L+ +
Sbjct: 304 TARVAARLIHTIVTA 318
>gnl|CDD|237500 PRK13776, PRK13776, formimidoylglutamase; Provisional.
Length = 318
Score = 67.7 bits (166), Expect = 5e-13
Identities = 74/285 (25%), Positives = 117/285 (41%), Gaps = 58/285 (20%)
Query: 31 QGPAFAPPRIREAI----WCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDD--- 83
G P IR A+ W G R + D GDV C DD
Sbjct: 62 VGAKHGPDAIRRALANLPWHG--------------GRAVVDAGDV------VCEDDDLEA 101
Query: 84 --DRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGP-----VDVLHLD 136
R + + +++ L P+ LGG H I++ + ++ L + +++ D
Sbjct: 102 AQSRYAQRVHD----LLDRGHL-PIGLGGGHEIAWASFQGLARHLARSAPLPRIGIINFD 156
Query: 137 AHPDIYDAFEGNKYSHASSFARIMEGGYAR----RLLQVGIR--SITKEGREQGKRFGV- 189
AH D+ G S + F +I E A+ +G+ S T E+ K+ GV
Sbjct: 157 AHFDLRKGERG---SSGTPFRQIAEYCAAKGWPFHYCCLGVSRFSNTAALFERAKQLGVR 213
Query: 190 ----EQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRD 245
E + +R FL++ V +Y+++ +D L A APGVS G+S
Sbjct: 214 YLSDEDMYEWSLARILAFLDDFIAN--VDHIYLTICLDVLPAAVAPGVSAPAARGVSLWV 271
Query: 246 VLNILHNLQAD--VVAADVVEFNPQRDTVDGMTAMVAAKLVRELT 288
+ ++ + A + AD+ E NP D +D TA VAA+LV EL
Sbjct: 272 IEPLVKRIIASGKLRLADIAELNPPLD-IDQRTARVAARLVAELV 315
>gnl|CDD|172310 PRK13772, PRK13772, formimidoylglutamase; Provisional.
Length = 314
Score = 61.7 bits (150), Expect = 5e-11
Identities = 80/272 (29%), Positives = 116/272 (42%), Gaps = 36/272 (13%)
Query: 32 GPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVIT 91
G A P IR A+ G + L D GDV V + D L V+
Sbjct: 62 GAAHGPREIRRAL----------AGVPAHGLPALADAGDV-VCDDGDLESAQAALAEVVA 110
Query: 92 ESVKLVMEEDPLHPLVLGGDHSI---SFPVIRAVSEKLG--GPVDVLHLDAHPDIYDAFE 146
E + PLVLGG H + ++ +RA + G G V +++LDAH D+ +
Sbjct: 111 EVL-----AAGARPLVLGGGHEVAWGTWQGLRAHLDAQGDRGRVLIINLDAHFDLRTSRP 165
Query: 147 GNKYSHASSFARIMEGGYARRL------LQVGIRSITKEGREQGKRFG---VEQYEMRTF 197
+ + F +I E AR L V S T + G VE +M+
Sbjct: 166 ASS---GTPFDQIAEDCAARGQPFDYACLGVSRLSNTPALFARADALGVRYVEDVDMQER 222
Query: 198 SRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQAD- 256
D + E L + VY+++D+D L A APGVS G+ V I+ +++A
Sbjct: 223 HLDARLAELDALLDAADHVYLTIDLDVLPAAVAPGVSAPAAYGVPLPVVEEIVLHVRASG 282
Query: 257 -VVAADVVEFNPQRDTVDGMTAMVAAKLVREL 287
+ AD+ E+NPQ D D TA VAA+L L
Sbjct: 283 KLRVADLAEYNPQYD-RDRRTARVAARLAYRL 313
>gnl|CDD|172313 PRK13775, PRK13775, formimidoylglutamase; Provisional.
Length = 328
Score = 55.8 bits (134), Expect = 6e-09
Identities = 66/246 (26%), Positives = 118/246 (47%), Gaps = 42/246 (17%)
Query: 67 DVGDV--PVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSE 124
DVG++ P + + ++L N +++++K M + L P+VLGG H ++ + +
Sbjct: 94 DVGNIDGPNRSL-------EQLQNSLSKAIKR-MCDLNLKPIVLGGGHETAYGHYLGLRQ 145
Query: 125 KLGGPVD--VLHLDAHPDI--YDAFEGNKYSHASSFARIMEGGYA-RRLLQVGIRSITKE 179
L D V+++DAH D+ YD N + F ++ + A +RL + + I +
Sbjct: 146 SLSPSDDLAVINMDAHFDLRPYDQTGPNS---GTGFRQMFDDAVADKRLFKYFVLGIQEH 202
Query: 180 ----------GREQGKRF--GVEQYEM---RTFSRDRQFLENLKLGEGVKGVYISVDVDC 224
+ +G +F G + Y+M + +FLE G + VY+++D+DC
Sbjct: 203 NNNLFLFDFVAKSKGIQFLTGQDIYQMGHQKVCRAIDRFLE------GQERVYLTIDMDC 256
Query: 225 LDPAFAPGVSHIEPGGLSFRDVLNILHNLQAD--VVAADVVEFNPQRDTVDGMTAMVAAK 282
APGVS I+ G+ + +L ++ A +V DVVE +P D +D TA +AA
Sbjct: 257 FSVGAAPGVSAIQSLGVDPNLAVLVLQHIAASGKLVGFDVVEVSPPHD-IDNHTANLAAT 315
Query: 283 LVRELT 288
+ L
Sbjct: 316 FIFYLV 321
>gnl|CDD|184317 PRK13774, PRK13774, formimidoylglutamase; Provisional.
Length = 311
Score = 42.1 bits (99), Expect = 2e-04
Identities = 46/193 (23%), Positives = 78/193 (40%), Gaps = 24/193 (12%)
Query: 106 LVLGGDHSISFPVIRAVSEKLG-GPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY 164
+LGG H I++ A + + V+++DAH D + + +SF +I+E
Sbjct: 124 FLLGGGHDIAYAQYLATRKVYPTQSIGVINIDAHFDTRAEQQS---TSGTSFRQILEEDE 180
Query: 165 ARRLLQVGIRSI--TKEGREQGKRFGVE-------QYEMRTFSRDR--QFLENLKLGEGV 213
L +GI T+ + K ++ + +D +F+ +
Sbjct: 181 NTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFIHEHDV---- 236
Query: 214 KGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHN--LQADVVAADVVEFNPQRDT 271
+ ++ +D +D AFAPGVS GL VL + V + + E NP D
Sbjct: 237 --IMFTICMDVIDSAFAPGVSAPAVLGLYPHTVLELAKRIIPSDKVSSVSIAEMNPTYD- 293
Query: 272 VDGMTAMVAAKLV 284
D TA + A LV
Sbjct: 294 ADNRTAKLVANLV 306
>gnl|CDD|221683 pfam12640, UPF0489, UPF0489 domain. This family is probably an
enzyme which is related to the Arginase family.
Length = 106
Score = 28.4 bits (64), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 116 FPVIRAVSE-KLGGPVDVLHLDAHPD 140
+ RA+ KL P ++H+DAHPD
Sbjct: 12 YAWYRALGRGKLPPPPTLVHIDAHPD 37
>gnl|CDD|236024 PRK07475, PRK07475, hypothetical protein; Provisional.
Length = 245
Score = 29.1 bits (66), Expect = 2.0
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 2 QGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELND 61
Q EL ALG VA++SLL VPL A P + I +S T L
Sbjct: 93 QRELAAALGVPVATSSLLQVPLIQ--------ALLPAGQKVGILTADASSLTPA--HLLA 142
Query: 62 PRVLTDVGDVPVQEIRDCG 80
V D +P+ + + G
Sbjct: 143 VGVPPDTSSLPIAGLEEGG 161
>gnl|CDD|185212 PRK15312, PRK15312, antimicrobial resistance protein Mig-14;
Provisional.
Length = 298
Score = 29.4 bits (66), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 115 SFPVIRAVSEKLGGPVDVLHLDAHPDIYDAF 145
SF + R V + GG +++ HPDI D F
Sbjct: 17 SFTLYREVFTQYGGSINM-----HPDIVDYF 42
>gnl|CDD|237427 PRK13559, PRK13559, hypothetical protein; Provisional.
Length = 361
Score = 29.0 bits (65), Expect = 3.1
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 23 LGHNSSFLQGPAFAP---PRIREAI 44
+G N FLQG A P +IR AI
Sbjct: 87 VGRNCRFLQGAATDPIAVAKIRAAI 111
>gnl|CDD|197269 cd09172, PLDc_Nuc_like_unchar1_1, Putative catalytic domain, repeat
1, of uncharacterized hypothetical proteins similar to
Nuc, an endonuclease from Salmonella typhimurium.
Putative catalytic domain, repeat 1, of uncharacterized
hypothetical proteins, which show high sequence homology
to the endonuclease from Salmonella typhimurium and
vertebrate phospholipase D6. Nuc and PLD6 belong to the
phospholipase D (PLD) superfamily. They contain a short
conserved sequence motif, the HKD motif (H-x-K-x(4)-D,
where x represents any amino acid residue), which
characterizes the PLD superfamily and is essential for
catalysis. Nuc and PLD6 utilize a two-step mechanism to
cleave phosphodiester bonds: Upon substrate binding, the
bond is first attacked by a histidine residue from one
HKD motif to form a covalent phosphohistidine
intermediate, which is then hydrolyzed by water with the
aid of a second histidine residue from the other HKD
motif in the opposite subunit. However, proteins in this
subfamily have two HKD motifs in a single polypeptide
chain.
Length = 144
Score = 28.1 bits (63), Expect = 3.6
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 23 LGHNSSFLQGPAFAPPRIREAIWCGSTNSTT 53
L HN + P R+ GSTN TT
Sbjct: 89 LMHNKFLVVDRKDGPNRV----LTGSTNFTT 115
>gnl|CDD|99824 cd05781, DNA_polB_B3_exo, DEDDy 3'-5' exonuclease domain of
Sulfurisphaera ohwakuensis DNA polymerase B3 and similar
archaeal family-B DNA polymerases. The 3'-5'
exonuclease domain of archaeal proteins with similarity
to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a
family-B DNA polymerase. Family-B DNA polymerases
contain an N-terminal DEDDy DnaQ-like exonuclease domain
in the same polypeptide chain as the polymerase domain,
similar to family-A DNA polymerases. B3 exhibits both
polymerase and 3'-5' exonuclease activities. This
exonuclease domain contains three sequence motifs termed
ExoI, ExoII and ExoIII, with a specific YX(3)D pattern
at ExoIII. These motifs are clustered around the active
site and are involved in metal binding and catalysis.
The exonuclease domain of family B polymerases also
contains a beta hairpin structure that plays an
important role in active site switching in the event of
nucleotide misincorporation. Archaeal proteins that are
involved in DNA replication are similar to those from
eukaryotes. Some archaea possess multiple family-B DNA
polymerases. B3 is mainly found in crenarchaea.
Phylogenetic analyses of eubacterial, archaeal, and
eukaryotic family B-DNA polymerases support independent
gene duplications during the evolution of archaeal and
eukaryotic family-B DNA polymerases.
Length = 188
Score = 27.7 bits (62), Expect = 6.7
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 61 DPRVLTDVG--DVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLG-GDHSISFP 117
DP ++ + + V+ I G+DD +I E VK V E DP +++G ++ +P
Sbjct: 24 DPIIVISLATSNGDVEFILAEGLDD---RKIIREFVKYVKEYDP--DIIVGYNSNAFDWP 78
Query: 118 VIRAVSEKLGGPVDV 132
+ + LG +DV
Sbjct: 79 YLVERARVLGVKLDV 93
>gnl|CDD|223491 COG0414, PanC, Panthothenate synthetase [Coenzyme metabolism].
Length = 285
Score = 27.6 bits (62), Expect = 6.9
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 16/52 (30%)
Query: 195 RTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDV 246
RT RD + LE VD + FAP V + P G+ V
Sbjct: 73 RTLERDLELLEK-------------EGVDIV---FAPTVEEMYPHGIERVTV 108
>gnl|CDD|181428 PRK08446, PRK08446, coproporphyrinogen III oxidase; Provisional.
Length = 350
Score = 28.0 bits (63), Expect = 7.0
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 151 SHASSFARIMEGG---YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENL 207
+H S+++ +E + + + ++ K EQ + G +QYE+ F ++ Q NL
Sbjct: 180 NHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNFGKNYQCKHNL 239
>gnl|CDD|173064 PRK14600, ruvA, Holliday junction DNA helicase RuvA; Provisional.
Length = 186
Score = 27.4 bits (61), Expect = 7.1
Identities = 12/54 (22%), Positives = 30/54 (55%)
Query: 240 GLSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293
G++++ ++IL L + + + +V + V+G+ + +++ EL K+SK
Sbjct: 80 GVNYKTAMSILSKLTPEQLFSAIVNEDKAALKVNGIGEKLINRIITELQYKVSK 133
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. There
are at least three subgroups of ArgRS. One type contains
both characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. The second subtype lacks
the KMSKS motif; however, it has a lysine N-terminal to
the HIGH motif, which serves as the functional
counterpart to the second lysine of the KMSKS motif. A
third group, which is found primarily in archaea and a
few bacteria, lacks both the KMSKS motif and the HIGH
loop lysine.
Length = 212
Score = 27.1 bits (61), Expect = 8.3
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 107 VLGGDHSISFPVIRAVSEKLGGP 129
V+G DH F + A E LG
Sbjct: 164 VVGADHHGHFKRLFAALELLGYD 186
>gnl|CDD|200395 TIGR04144, archaeo_VPXXXP, archaeosortase B, VPXXXP-CTERM-specific.
Members of this protein family are found so far in
Methanohalophilus mahii DSM 5219 and Methanohalobium
evestigatum Z-7303, along with five and nine proteins,
respectively, with the VPXXXP-CTERM protein sorting
signal (TIGR04143). In these species, this boutique
system represents a second
exosortase/archaeosortase-type system.
Length = 156
Score = 26.8 bits (59), Expect = 9.4
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 241 LSFRDVLNILHNLQADVVAADVVEFNPQRDTVDG-----MTAMVAAKLVRELT 288
+ F+D L N+ AD +A + F Q ++VD ++A K++ E T
Sbjct: 20 IFFKDDLEFFRNITADGFSAILGLFGIQ-NSVDENIIHFENGIIALKVIDECT 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.138 0.399
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,320,064
Number of extensions: 1523165
Number of successful extensions: 1484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1405
Number of HSP's successfully gapped: 51
Length of query: 293
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 197
Effective length of database: 6,679,618
Effective search space: 1315884746
Effective search space used: 1315884746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)