RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022685
(293 letters)
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Length = 313
Score = 230 bits (590), Expect = 6e-75
Identities = 85/281 (30%), Positives = 143/281 (50%), Gaps = 25/281 (8%)
Query: 18 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTT---EEGKELNDPRVLTDVGDVPVQ 74
+ G+P + SS+ +G +AP IR A N + G +L + D+GD+
Sbjct: 39 VFGIPFDNTSSYRRGSKYAPDSIRGA----YVNLESYEYSYGIDLLASGMA-DLGDMEES 93
Query: 75 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLH 134
D + +++ + V VM + + P++LGG+HSI+ +RA+ + + ++
Sbjct: 94 ------EDVEYVIDTVESVVSAVMSDGKI-PIMLGGEHSITVGAVRALPKDVD----LVI 142
Query: 135 LDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEM 194
+DAH D ++ GNKY+HA R ++ R+ +GIRS+++E E V
Sbjct: 143 VDAHSDFRSSYMGNKYNHACVTRRALDLLGEGRITSIGIRSVSREEFEDPDFRKVSFISS 202
Query: 195 RTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHN 252
++ +++E + + VYISVD+D +DPA+AP V EP GL+ DV ++
Sbjct: 203 FDVKKNGIDKYIEEVD--RKSRRVYISVDMDGIDPAYAPAVGTPEPFGLADTDVRRLIER 260
Query: 253 LQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293
L V D+VEF+P D G T+M+AAKL++ A K
Sbjct: 261 LSYKAVGFDIVEFSPLYDN--GNTSMLAAKLLQVFIASREK 299
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II),
nysgxrc structural genomics, NEW YORK SGX research
center for struc genomics; 2.30A {Clostridium difficile}
Length = 287
Score = 217 bits (554), Expect = 7e-70
Identities = 75/282 (26%), Positives = 133/282 (47%), Gaps = 23/282 (8%)
Query: 18 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTT---EEGKELNDPRVLTDVGDVPVQ 74
+ GV +S G FA +R+ T +L D + D GD+ +
Sbjct: 12 VFGVGFDGTTSNRPGARFASSSMRKE----FYGLETYSPFLDLDLEDYNIC-DYGDLEI- 65
Query: 75 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLH 134
G ++++ I + ++ + + P ++GG+H ++ P +AV EK + V+H
Sbjct: 66 ---SVG-STEQVLKEIYQETYKIVRDSKV-PFMIGGEHLVTLPAFKAVHEKYN-DIYVIH 119
Query: 135 LDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEM 194
DAH D+ + + +K SHA+ RI + ++ Q GIRS TKE + E+
Sbjct: 120 FDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRSGTKEEFKFATEEKHTYMEI 179
Query: 195 RTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQ 254
+ L K +Y+++D+D LD + PG EPGG+++R+ I ++
Sbjct: 180 GGIDTFENIVNML----NGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIK 235
Query: 255 A---DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293
++V D+VE +P DT G++ ++A K++REL IS
Sbjct: 236 NSNINIVGCDIVELSPDYDT-TGVSTVIACKILRELCLIISD 276
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein
structure initia structural genomics of pathogenic
protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP:
c.42.1.1
Length = 316
Score = 209 bits (534), Expect = 2e-66
Identities = 54/284 (19%), Positives = 98/284 (34%), Gaps = 29/284 (10%)
Query: 18 LLGVPL---GHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRV---LTDVGDV 71
++G P + G P R + ELN L D GD+
Sbjct: 34 IIGFPYDEGCVRNGGRAGAKKGPAAFRFF----LQRLGSVNNLELNVDASHLKLYDAGDI 89
Query: 72 PVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVD 131
+ + + V V+ P V+GG + S P RA+ G V
Sbjct: 90 TASTLEEA-------HEKLESKVFTVLARGAF-PFVIGGGNDQSAPNGRAMLRAFPGDVG 141
Query: 132 VLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYAR--RLLQVGIRSI--TKEGREQGKRF 187
V+++D+H D+ + + + F +++E R ++ + + +
Sbjct: 142 VINVDSHLDVRPPLQDGRVHSGTPFRQLLEESSFSGKRFVEFACQGSQCGALHAQYVRDH 201
Query: 188 GVEQYEMRTFSRDRQFLENLK--LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRD 245
+ R + + L+ G K + S DVD L + PGVS GLS ++
Sbjct: 202 QGHLMWLSEV-RKKGAVAALEDAFGLTGKNTFFSFDVDSLKSSDMPGVSCPAAVGLSAQE 260
Query: 246 VLNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 287
++ V+ D+ E NP + + + VA +
Sbjct: 261 AFDMCFLAGKTPTVMMMDMSELNPLVE--EYRSPRVAVYMFYHF 302
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Length = 322
Score = 207 bits (529), Expect = 1e-65
Identities = 79/291 (27%), Positives = 145/291 (49%), Gaps = 29/291 (9%)
Query: 18 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTT---EEGKELNDPRVLTDVGDVPVQ 74
L+GVPL +S G +FAP IR+A +S+ E G+ + + D+GD+ +
Sbjct: 42 LIGVPLSKSSISHSGASFAPGTIRQA----LKHSSAYSAELGEHVVSELLY-DLGDIDI- 95
Query: 75 EIRDCGVDDDRLMNVITESVKLVMEEDP-LHPLVLGGDHSISFPVIRAVSEKLGGPVDVL 133
D + + I +++ ++ + P PL+LGGD+SIS+ I+A+++ G V+
Sbjct: 96 ---HVT-DIVKSHHHIFQTMHALLSDHPDWVPLILGGDNSISYSTIKAIAQT-KGTTAVI 150
Query: 134 HLDAHPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIR--SITKEGREQGKRFGV 189
DAH D+ + +G ++ + F R+++ + L+Q+GIR S ++ K+ V
Sbjct: 151 QFDAHHDVRNTEDGG-PTNGTPFRRLLDEEIIEGQHLIQLGIREFSNSQAYEAYAKKHNV 209
Query: 190 EQYEMRTFSRDRQFLENLK-----LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFR 244
+ M R++ + +K + + ++ISVD+D LD + APG I PGGL
Sbjct: 210 NIHTMDMI-REKGLIPTIKEILPVVQDKTDFIFISVDMDVLDQSHAPGCPAIGPGGLYTD 268
Query: 245 DVLNILHNL--QADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293
++L + + Q +V ++VE +P D MT+ AA ++ +
Sbjct: 269 ELLEAVKYIAQQPNVAGIEIVEVDPTLDF-RDMTSRAAAHVLLHALKGMKL 318
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus
radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Length = 305
Score = 204 bits (522), Expect = 8e-65
Identities = 91/299 (30%), Positives = 129/299 (43%), Gaps = 18/299 (6%)
Query: 1 MQGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKE-L 59
+ LV+ G A + LGVP F G FAP +REA T +GK L
Sbjct: 16 ARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRL 75
Query: 60 NDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVI 119
D GDV + + + ITE+ + V + P+ LGGDHS+S+P++
Sbjct: 76 QGVTFA-DAGDVIL----PSL-EPQLAHDRITEAARQVRGRCRV-PVFLGGDHSVSYPLL 128
Query: 120 RAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG-GYARRLLQVGIRSI-- 176
RA ++ + V+ LDAH D D K+S++S F R E + VG+R +
Sbjct: 129 RAFADV--PDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRF 186
Query: 177 TKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHI 236
E + G M L + VY SVDVD DPA PG S
Sbjct: 187 DPEAVAAARARGHTIIPMDDV--TADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSP 244
Query: 237 EPGGLSFRDVLNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293
EP GL++ + IL A VV D+VE P D G + ++ A+LV E ++
Sbjct: 245 EPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDP-TGRSELLMARLVMETLCEVFD 302
>4dz4_A Agmatinase; hydrolase; 1.70A {Burkholderia thailandensis}
Length = 324
Score = 201 bits (514), Expect = 2e-63
Identities = 80/282 (28%), Positives = 129/282 (45%), Gaps = 20/282 (7%)
Query: 18 LLGVPLGHNSSFLQGPAFAPPRIREA-IWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEI 76
+ GVPL ++F G P +R A + N +D V+ D GD
Sbjct: 51 VSGVPLDLATTFRSGARLGPSAVRAASVQLAELNPYPWGFDPFDDLAVI-DYGDCWF--- 106
Query: 77 RDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLD 136
D + I E + +++ D L LGGDH I++P++ A ++K G P+ ++H D
Sbjct: 107 -DAH-HPLSIKPAIVEHARTILQSDAR-MLTLGGDHYITYPLLIAHAQKYGKPLSLIHFD 163
Query: 137 AHPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRSITKEGREQGKRFGVEQYEM 194
AH D + + +H + F + ++ G + +QVGIR+ + G+ +
Sbjct: 164 AHCDTWADDAPDSLNHGTMFYKAVKDGLIDPKASVQVGIRTWNDD------YLGINVLDA 217
Query: 195 RTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHN 252
R LE ++ G + Y++ D+DCLDPAFAPG GGLS L I+
Sbjct: 218 AWVHEHGARATLERIESIVGGRPAYLTFDIDCLDPAFAPGTGTPVAGGLSSAQALAIVRG 277
Query: 253 LQA-DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293
L +++ ADVVE P D +TA+ AA + +L +
Sbjct: 278 LGGVNLIGADVVEVAPAYDQ-SEITAIAAAHVACDLLCLWRQ 318
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase,
antibioti; 1.75A {Streptomyces clavuligerus} SCOP:
c.42.1.1 PDB: 1gq7_A
Length = 313
Score = 198 bits (507), Expect = 2e-62
Identities = 79/284 (27%), Positives = 133/284 (46%), Gaps = 18/284 (6%)
Query: 18 LLGVPLGHNSSFLQGPAFAPPRIREA-IWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEI 76
++G P +S+ G F P IR G D D GD+ +
Sbjct: 34 VIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVGIDR--GPGTFDLINCVDAGDINL--- 88
Query: 77 RDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLD 136
D + ++ + +++ + L++GGDHS++ +RAV+E+ G P+ V+HLD
Sbjct: 89 -TPF-DMNIAIDTAQSHLSGLLKANAA-FLMIGGDHSLTVAALRAVAEQHG-PLAVVHLD 144
Query: 137 AHPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRS--ITKEGREQGKRFGVEQY 192
AH D AF G +Y H + F ++ ++Q+GIR + + + GV
Sbjct: 145 AHSDTNPAFYGGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHNPKPDSLDYARGHGVRVV 204
Query: 193 EMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNIL 250
F + ++ G + VY+SVD+D +DPAFAPG PGGL R+VL +L
Sbjct: 205 TADEFGELGVGGTADLIREKVGQRPVYVSVDIDVVDPAFAPGTGTPAPGGLLSREVLALL 264
Query: 251 HNLQA-DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293
+ V DV+E +P D G+T+++A ++ EL + ++
Sbjct: 265 RCVGDLKPVGFDVMEVSPLYDH-GGITSILATEIGAELLYQYAR 307
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae
O1 biovar eltor, structure genomics, protein structure
initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Length = 336
Score = 196 bits (500), Expect = 3e-61
Identities = 59/300 (19%), Positives = 119/300 (39%), Gaps = 42/300 (14%)
Query: 18 LLGVPLGHNSSFLQ---GPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQ 74
L+G + G AP I++A N P + D+G++ +
Sbjct: 47 LIGFECDAGVERNKGRTGAKHAPSLIKQA----LANLAWH------HPIPIYDLGNIRCE 96
Query: 75 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG------G 128
G + ++ + ++ + +VLGG H I++ + +++
Sbjct: 97 -----GDELEQAQQECAQVIQQALPHA--RAIVLGGGHEIAWATFQGLAQHFLATGVKQP 149
Query: 129 PVDVLHLDAHPDIYDA---FEGNKYSHASSFARIMEGGYAR----RLLQVGIR--SITKE 179
+ +++ DAH D+ + S + F +I + +G+ S T
Sbjct: 150 RIGIINFDAHFDLRTFESELAPVRPSSGTPFNQIHHFCQQQGWDFHYACLGVSRASNTPA 209
Query: 180 GREQGKRFGVEQYEMRTFSRD--RQFLENLK-LGEGVKGVYISVDVDCLDPAFAPGVSHI 236
E+ + GV E + FS + L L+ + +Y+++D+D A APGVS
Sbjct: 210 LFERADKLGVWYVEDKAFSPLSLKDHLTQLQHFIDDCDYLYLTIDLDVFPAASAPGVSAP 269
Query: 237 EPGGLSFRDVLNILHNLQA---DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293
G+S + + ++ AD+ E+NP D +D TA +AA+L ++ +++
Sbjct: 270 AARGVSLEALAPYFDRILHYKNKLMIADIAEYNPSFD-IDQHTARLAARLCWDIANAMAE 328
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas
aeruginosa} PDB: 3nip_A
Length = 326
Score = 186 bits (475), Expect = 1e-57
Identities = 85/284 (29%), Positives = 128/284 (45%), Gaps = 18/284 (6%)
Query: 18 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR 77
L+GVP ++ G P +R + RV D+GD PV
Sbjct: 39 LIGVPWDGGTTNRAGARHGPREVRNLSSLMRKVHHVSRIAPYDLVRVG-DLGDAPV---- 93
Query: 78 DCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDA 137
+ D + I + V L PL +GGDH ++ P+ RA+ + P+ ++H DA
Sbjct: 94 NPI-DLLDSLRRIEGFYRQVHAAGTL-PLSVGGDHLVTLPIFRALGRE--RPLGMVHFDA 149
Query: 138 HPDIYDAFEG-NKYSHASSFARIMEGGY--ARRLLQVGIRS--ITKEGREQGKRFGVEQY 192
H D D + G N Y+H + F R +E G R +Q+GIR + + + G+
Sbjct: 150 HSDTNDRYFGDNPYTHGTPFRRAIEEGLLDPLRTVQIGIRGSVYSPDDDAFARECGIRVI 209
Query: 193 EMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNIL 250
M F L + G Y+S DVD LDPAFAPG E GG++ ++
Sbjct: 210 HMEEFVELGVEATLAEARRVVGAGPTYVSFDVDVLDPAFAPGTGTPEIGGMTSLQAQQLV 269
Query: 251 HNLQA-DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293
L+ D+V ADVVE +P D G TA+V A ++ EL +++
Sbjct: 270 RGLRGLDLVGADVVEVSPPFDV-GGATALVGATMMFELLCLLAE 312
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis,
nitrogen metabolism, manganese metalloenzyme; 2.15A
{Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A*
4cev_A 5cev_A*
Length = 299
Score = 178 bits (455), Expect = 6e-55
Identities = 70/299 (23%), Positives = 124/299 (41%), Gaps = 38/299 (12%)
Query: 17 SLLGVPLGHNSSFLQGPAFAPPRIREA-----IWCGSTNSTTEEGKELNDPRVLTDVGDV 71
S++GVP+ + +G P +R A + + + L + GD
Sbjct: 5 SIIGVPMDLGQTR-RGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDS 63
Query: 72 PVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVD 131
++ ++ + +V V++ PLVLGGDHSI+ + V++ +
Sbjct: 64 RLRNLKAVA----EANEKLAAAVDQVVQRGRF-PLVLGGDHSIAIGTLAGVAKH-YERLG 117
Query: 132 VLHLDAHPDIYD-AFEGNKYSHASSFARIMEGGY--------------ARRLLQVGIRSI 176
V+ DAH D+ + H A + G+ ++ +G+RS+
Sbjct: 118 VIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSL 177
Query: 177 TKEGREQGKRFGVEQYEMRTFSRD------RQFLENLKLGEGVKGVYISVDVDCLDPAFA 230
+ ++ + G++ Y M R + + L E GV++S+D+D LDP+ A
Sbjct: 178 DEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIA--YLKERTDGVHLSLDLDGLDPSDA 235
Query: 231 PGVSHIEPGGLSFRDVLNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 287
PGV GGL++R+ + L + +A+ VE NP D TA VA L+ L
Sbjct: 236 PGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDE-RNKTASVAVALMGSL 293
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A
{Pseudomonas aeruginosa}
Length = 319
Score = 178 bits (454), Expect = 2e-54
Identities = 80/286 (27%), Positives = 132/286 (46%), Gaps = 22/286 (7%)
Query: 18 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTT---EEGKELNDPRVLTDVGDVPVQ 74
+GVPL +S G F P IR S G D + D+GDV +
Sbjct: 42 FVGVPLDIGTSLRSGTRFGPREIRAE----SVMIRPYNMATGAAPFDSLNVADIGDVAI- 96
Query: 75 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLH 134
+ + +I + ++ L PL LGGDH+I+ P++RA+ + G V ++H
Sbjct: 97 ----NTFNLLEAVRIIEQEYDRILGHGIL-PLTLGGDHTITLPILRAIXKXHGX-VGLVH 150
Query: 135 LDAHPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRS--ITKEGREQGKRFGVE 190
+DAH D+ D G +H ++F R +E R++Q+G+R+ T E + G
Sbjct: 151 VDAHADVNDHMFGEXIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRXQGFR 210
Query: 191 QYEMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLN 248
+ + ++ G VY+S D+D +DPA+APG E GGL+ +
Sbjct: 211 VVQAEECWHXSLEPLMAEVREXVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAME 270
Query: 249 ILHNLQA-DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293
I+ Q D++ D+VE +P DT G T+++ A L+ E+ +
Sbjct: 271 IIRGCQGLDLIGCDLVEVSPPYDT-TGNTSLLGANLLYEMLCVLPG 315
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on
protein structural and function analyses; HET: LYS;
2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Length = 290
Score = 171 bits (436), Expect = 3e-52
Identities = 79/300 (26%), Positives = 121/300 (40%), Gaps = 48/300 (16%)
Query: 17 SLLGVP--LGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPV- 73
+++GVP LG N G P +R A E+ ++L V D+GDVPV
Sbjct: 4 AVVGVPMDLGANRR---GVDMGPSALRYA-------RLLEQLEDL-GYTV-EDLGDVPVS 51
Query: 74 -QEIRDCGVDDDRLMNVITESVKLVMEEDPL-----HPLVLGGDHSISFPVIRAVSEKLG 127
+ I + ++ E P+VLGGDHS+S + + G
Sbjct: 52 LARASRRRGRGLAYLEEIRAAALVLKERLAALPEGVFPIVLGGDHSLSMGSVAGAAR--G 109
Query: 128 GPVDVLHLDAHPDIYD-AFEGNKYSHASSFARIMEGGY-----------ARRLLQVGIRS 175
V V+ +DAH D + H A + G+ + ++ VG+RS
Sbjct: 110 RRVGVVWVDAHADFNTPETSPSGNVHGMPLAVLSGLGHPRLTEVFRAVDPKDVVLVGVRS 169
Query: 176 ITKEGREQGKRFGVEQYEMRTFSRD------RQFLENLKLGEGVKGVYISVDVDCLDPAF 229
+ + K GV Y M R + L++L +++S+D D LDP
Sbjct: 170 LDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKHL----QGLPLHVSLDADVLDPTL 225
Query: 230 APGVSHIEPGGLSFRDVLNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 287
APGV PGGL++R+ ++ L V + D+VE NP D TA + L L
Sbjct: 226 APGVGTPVPGGLTYREAHLLMEILAESGRVQSLDLVEVNPILDE-RNRTAEMLVGLALSL 284
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein,
hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Length = 306
Score = 168 bits (427), Expect = 1e-50
Identities = 60/308 (19%), Positives = 113/308 (36%), Gaps = 49/308 (15%)
Query: 17 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEI 76
+++G P +G P IREA + D GD+ +
Sbjct: 4 AVIGAPFSQGQK-RKGVEHGPAAIREA----GLMKRLSS----LGCHL-KDFGDLSFTPV 53
Query: 77 RDCGVDDDRLMN---------VITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG 127
+ ++ ++N + E V + + + LGGDHS++ I +
Sbjct: 54 PKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYS-CVTLGGDHSLAIGTISGHARH-C 111
Query: 128 GPVDVLHLDAHPDIYD-AFEGNKYSHASSFARIMEGGY-----------------ARRLL 169
+ V+ +DAH DI + H + ++ + ++
Sbjct: 112 PDLCVVWVDAHADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSASIV 171
Query: 170 QVGIRSITKEGREQGKRFGVEQYEMRTFSRD------RQFLENLKLGEGVKGVYISVDVD 223
+G+R + K + ++ + MR R + + L G+ + +++S D+D
Sbjct: 172 YIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLI-GKRQRPIHLSFDID 230
Query: 224 CLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAA 281
DP AP GGL++R+ + I + + A D+VE NPQ T A A
Sbjct: 231 AFDPTLAPATGTPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQLAT-SEEEAKTTA 289
Query: 282 KLVRELTA 289
L ++ A
Sbjct: 290 NLAVDVIA 297
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI
hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Length = 330
Score = 166 bits (422), Expect = 1e-49
Identities = 58/321 (18%), Positives = 114/321 (35%), Gaps = 57/321 (17%)
Query: 17 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEI 76
L+G+ +S +G R+REA + G + + +T V +E
Sbjct: 2 ILVGLEAELGASK-RGTDKGVRRLREA-------LSATHGDVIKGMQTITQERCVLYKEF 53
Query: 77 RDCGVDDDRLMNV---ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEK-LGGPVDV 132
R +D + + +K V E+ PL+L +H+ F + +A + +
Sbjct: 54 RYAKNFEDYYLFCKENLIPCMKEVFEKKEF-PLILSSEHANMFGIFQAFRSVHKDKKIGI 112
Query: 133 LHLDAHPDIYD-AFEGNKYSHASSFARIMEGGYAR------------------------- 166
L+LDAH DI+ +K+ H ++ +
Sbjct: 113 LYLDAHADIHTAYDSDSKHIHGMPLGMVLNRVRSGFNRMSESEEKAWQKLCSLGLEKGGL 172
Query: 167 -----RLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD-----RQFLENLKLGEGVKGV 216
L+ G+RS + R+ + + + + + ++ E+LK V +
Sbjct: 173 EIDPKCLVYFGVRSTEQSERDVIRELQIPLFSVDAIRENMQEVVQKTKESLK---AVDII 229
Query: 217 YISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA----DVVAADVVEFNPQRDTV 272
Y+S+D+D +D E GLSF ++ +L L + A +V E+NP
Sbjct: 230 YLSLDLDIMDGKLFTSTGVRENNGLSFDELKQLLGLLLESFKDRLKAVEVTEYNPTVSIK 289
Query: 273 DG-MTAMVAAKLVRELTAKIS 292
+++ +
Sbjct: 290 HNNEEEKQVLEILDLIINSCK 310
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid
inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo
sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A
2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A*
3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A*
3tf3_A 3th7_A 3the_A* ...
Length = 322
Score = 163 bits (416), Expect = 8e-49
Identities = 57/302 (18%), Positives = 104/302 (34%), Gaps = 38/302 (12%)
Query: 17 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEE---GKELNDPRVLTDVGDVPV 73
++G P G P +R+A +E + D+ +
Sbjct: 9 GIIGAPFSKGQP-RGGVEEGPTVLRKA----GLLEKLKEQECDVKDYGDLPFADIPNDSP 63
Query: 74 QEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVL 133
+I + + V V + + LVLGGDHS++ I + + V+
Sbjct: 64 FQIVKNPRSVGKASEQLAGKVAEVKKNGRI-SLVLGGDHSLAIGSISGHARV-HPDLGVI 121
Query: 134 HLDAHPDIYD-AFEGNKYSHASSFARIMEGGY-----------------ARRLLQVGIRS 175
+DAH DI + H + +++ A+ ++ +G+R
Sbjct: 122 WVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRD 181
Query: 176 ITKEGREQGKRFGVEQYEMRTFSRD------RQFLENLKLGEGVKGVYISVDVDCLDPAF 229
+ K G++ + M R + L L G + +++S DVD LDP+F
Sbjct: 182 VDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLL-GRKKRPIHLSFDVDGLDPSF 240
Query: 230 APGVSHIEPGGLSFRDVLNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 287
P GGL++R+ L I + + D++E NP +
Sbjct: 241 TPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLG-KTPEEVTRTVNTAVAI 299
Query: 288 TA 289
T
Sbjct: 300 TL 301
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex;
HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A*
3sl0_A*
Length = 413
Score = 165 bits (419), Expect = 2e-48
Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 29/226 (12%)
Query: 90 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDA----- 144
+ +++ + + L +GGDH ++F I + + + V+ +DAH DI
Sbjct: 174 LFDTMSNELRKKNF-VLNIGGDHGVAFSSILSSLQM-YQNLRVIWIDAHGDINIPETSPS 231
Query: 145 --FEGNKYSHASSFARIMEGGY----------ARRLLQVGIRSITKEGREQGKRFGVEQY 192
+ G +H + + +GIR I + K+ + Y
Sbjct: 232 GNYHGMTLAHTLGLFKKKVPYFEWSENLTYLKPENTAIIGIRDIDAYEKIILKKCNINYY 291
Query: 193 EMRTFSRD------RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDV 246
+ ++ LE + ++IS+D+D +D FAPG + GGL++R++
Sbjct: 292 TIFDIEKNGIYNTICTALEKID-PNSNCPIHISLDIDSVDNVFAPGTGTVAKGGLNYREI 350
Query: 247 LNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAK 290
++ L VV+ D+VE+NP D + + + K
Sbjct: 351 NLLMKILAETKRVVSMDLVEYNPSLDE-VDKKVHGDSLPILDNATK 395
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.003
Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 91/234 (38%)
Query: 115 SFPVIRAV--------SEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYAR 166
+ + V + G + + ++ ++ F G K G R
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK------------GKRIR 1685
Query: 167 RLLQVGIRSITKEGREQGKRFGVEQYEMR---TFSRDR------QF------------LE 205
I +G+ + ++ E E TF ++ QF E
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 206 NLK---------------LGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNIL 250
+LK LGE Y + + A +S ++ ++
Sbjct: 1746 DLKSKGLIPADATFAGHSLGE-----Y-AALA-----SLA--------DVMSIESLVEVV 1786
Query: 251 H---NLQADVVAAD--------VVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 293
V D ++ NP R + A + + ++ + ++ K
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGR-----VAASFSQEALQYVVERVGK 1835
Score = 36.6 bits (84), Expect = 0.011
Identities = 72/447 (16%), Positives = 133/447 (29%), Gaps = 183/447 (40%)
Query: 4 ELV-RALG---------GAVASTSLLGVPLGH-NSSFLQGP---AFA---PPR------- 39
ELV + LG +L + L + +L+G A A
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 40 ----IR---EAIWCGSTNSTTEEGKEL------NDPRVLTDVG-----DVPVQEIRD--- 78
I+ A + L + +++ G D +E+RD
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 79 ---CGVDD--DRLMNVITESVKLVMEEDPLHPLVL-------------GGDH----SISF 116
V D ++E ++ ++ + + L D+ IS
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 117 PVI--------RAVSEKLG-GPVDVL-HLD---------------AHPDIYDAFEGNKYS 151
P+I ++ LG P ++ +L A D +++F +
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF----FV 294
Query: 152 HASSFARIMEGGYARRLLQVGIRS------------ITKEGREQGKRFGVEQYEMRTFS- 198
+ L +G+R I ++ E + GV M S
Sbjct: 295 SVRKAITV--------LFFIGVRCYEAYPNTSLPPSILEDSLENNE--GVPSP-M--LSI 341
Query: 199 RD--RQFLE------NLKLGEGVKGVYISV--------------DVDCLDPAF----AP- 231
+ ++ ++ N L G K V IS+ + L+ AP
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAG-KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 232 GV--SHIE------PGGLSFRDVLNI---LHN--LQ--ADVVAADV----VEFN------ 266
G+ S I F L + H+ L +D++ D+ V FN
Sbjct: 401 GLDQSRIPFSERKLKFSNRF---LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 267 PQRDTVDG-----MTAMVAAKLVRELT 288
P DT DG ++ ++ ++V +
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCII 484
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.007
Identities = 45/333 (13%), Positives = 92/333 (27%), Gaps = 129/333 (38%)
Query: 25 HNSSFLQGPAFAP---PR------IREAIW----------CGSTNSTTEEGKELNDPRVL 65
+ + FA R +R+A+ G S GK +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS----GKT-----WV 166
Query: 66 T-DV-GDVPVQEIRDCGV---------DDDRLMNVITESVKLVMEEDPLHPLVLGGDHSI 114
DV VQ D + + ++ ++ KL+ + DP DHS
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDP--NWTSRSDHSS 221
Query: 115 SFPV-IRAVSEKL-------GGPVDVLHLD--AHPDIYDAFE------------------ 146
+ + I ++ +L +L L + ++AF
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 147 -GNKYSHASS---------------FARIMEGGYA---RRLLQVG---IRSITKEGREQG 184
+H S + ++ R +L + I + R+
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 185 KRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPA-----------FAPGV 233
+ + ++ + L + I ++ L+PA F P
Sbjct: 342 ATW--DNWKHVNCDK----LTTI----------IESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 234 SHIEPGGLSFRDVLNIL-HNLQADVVAADVVEF 265
HI +L+++ ++ V V +
Sbjct: 386 -HIPT------ILLSLIWFDVIKSDVMVVVNKL 411
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein,
flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB:
4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Length = 115
Score = 30.2 bits (69), Expect = 0.29
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 23 LGHNSSFLQGPAFAPP---RIREAIWCG 47
LG N+ FLQGP +IR+AI
Sbjct: 41 LGRNARFLQGPETDQATVQKIRDAIRDQ 68
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena
sativa} PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 31.1 bits (70), Expect = 0.37
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 23 LGHNSSFLQGPAFAPP---RIREAI 44
LG N+ FLQGP +IR+AI
Sbjct: 55 LGRNARFLQGPETDRATVRKIRDAI 79
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin,
electron transport; HET: FMN; 1.90A {Chlamydomonas
reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Length = 109
Score = 29.8 bits (68), Expect = 0.40
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 23 LGHNSSFLQGPAFAPP---RIREAIWCG 47
LGHN FLQG P +IR+AI G
Sbjct: 37 LGHNCRFLQGEGTDPKEVQKIRDAIKKG 64
>3t50_A Blue-light-activated histidine kinase; PAS superfamily,
blue-light photoreceptor, FMN binding, TRAN; HET: FMN;
1.64A {Brucella melitensis}
Length = 128
Score = 29.4 bits (67), Expect = 0.55
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 23 LGHNSSFLQGPAFAPP---RIREAIWCG 47
+G N FLQG P I+ AI
Sbjct: 41 MGRNCRFLQGHGTDPAHVRAIKSAIAAE 68
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing,
ATP-binding, chromophore, flavoprotein, FMN, kinase,
membrane, nucleotide-binding; HET: FMN; 2.00A
{Arabidopsis thaliana} PDB: 2z6c_A*
Length = 130
Score = 29.4 bits (67), Expect = 0.62
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 23 LGHNSSFLQGPAFAPP---RIREAI 44
+G N FLQGP +IR+ +
Sbjct: 50 VGRNCRFLQGPDTDKNEVAKIRDCV 74
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV,
PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN;
1.45A {Bacillus subtilis} PDB: 2pr6_A*
Length = 132
Score = 29.4 bits (67), Expect = 0.69
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 23 LGHNSSFLQGPAFAPP---RIREAIWCG 47
LG N FLQG P IR A+
Sbjct: 43 LGKNCRFLQGKHTDPAEVDNIRTALQNK 70
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding,
serine/threonine-protein kinase, light-induced signal
trans phototropin1, nucleotide-binding; HET: FMN; 1.40A
{Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A*
1g28_A*
Length = 146
Score = 29.1 bits (66), Expect = 0.80
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 23 LGHNSSFLQGPAFAPP---RIREAI 44
LG N FLQGP +IR+AI
Sbjct: 46 LGRNCRFLQGPETDRATVRKIRDAI 70
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite,
structural proteomics in europe, spine, structural
genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens}
SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Length = 450
Score = 30.2 bits (67), Expect = 0.91
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 120 RAVSEKLGGPVDVLHLDA-----HPDIYDAFEGNKYSHASSFARIMEGGYARRL 168
+ + G P V H+DA + F NKY + R M+ GY + +
Sbjct: 343 KDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMI 396
>2joi_A Hypothetical protein TA0095; structural genomics, COG4004
orthologous group, structural genomics consortium, SGC,
unknown function; NMR {Thermoplasma acidophilum}
Length = 118
Score = 28.8 bits (64), Expect = 1.0
Identities = 9/58 (15%), Positives = 18/58 (31%)
Query: 92 ESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNK 149
+S+K + E G S P I + K +++ + D +
Sbjct: 37 DSIKRKISELGFDVKSEGDLIIASIPGISRIEIKPDKRKILVNTGDYDSDADKLAVVR 94
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling
protein; HET: FMN; 2.63A {Pseudomonas putida}
Length = 162
Score = 28.7 bits (65), Expect = 1.3
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 23 LGHNSSFLQGPAFAPP---RIREAIWCG 47
L + FLQG RIR+A+ G
Sbjct: 69 LYQDCRFLQGDDRDQLGRARIRKAMAEG 96
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor,
signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB:
3ulf_A*
Length = 166
Score = 28.8 bits (65), Expect = 1.4
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 23 LGHNSSFLQGPAFAPP---RIREAIWCG 47
LG N FLQGP P +IR AI G
Sbjct: 79 LGRNCRFLQGPETDPRAVDKIRNAITKG 106
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription
factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter
litoralis}
Length = 258
Score = 28.8 bits (64), Expect = 1.9
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 23 LGHNSSFLQGPAFAPP---RIREAIWCG 47
+G N FL G P +IR+ +
Sbjct: 107 VGRNCRFLAGSGTEPWLTDKIRQGVREH 134
>3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure
initiative, midwest center for structural genomic
hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB:
3s8y_A
Length = 280
Score = 28.3 bits (63), Expect = 3.1
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 54 EEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVL----G 109
+ D +L V + D G D+ L + V +PL L G
Sbjct: 196 TDTWREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAAASSNNYPLELRSHEG 255
Query: 110 GDHSISF 116
DHS F
Sbjct: 256 YDHSYYF 262
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.399
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,654,809
Number of extensions: 298597
Number of successful extensions: 695
Number of sequences better than 10.0: 1
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 40
Length of query: 293
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 200
Effective length of database: 4,105,140
Effective search space: 821028000
Effective search space used: 821028000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)