BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022686
         (293 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1S04|A Chain A, Solution Nmr Structure Of Protein Pf0455 From Pyrococcus
           Furiosus. Northeast Structural Genomics Consortium
           Target Pfr13
          Length = 110

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMM-LKVQSVCHYDSF 187
           +E+E+ +QE F   IK   + +EGR        I PG VI      + ++V+++  Y+SF
Sbjct: 1   MEWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSF 60

Query: 188 SEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICIS 233
            EMLE E L  VLPGVK+IEEG+Q+YR+FY EEKE+  GV+AI I 
Sbjct: 61  REMLEKEGLENVLPGVKSIEEGIQVYRRFYDEEKEKKYGVVAIEIE 106


>pdb|2Z0T|A Chain A, Crystal Structure Of Hypothetical Protein Ph0355
 pdb|2Z0T|B Chain B, Crystal Structure Of Hypothetical Protein Ph0355
 pdb|2Z0T|C Chain C, Crystal Structure Of Hypothetical Protein Ph0355
 pdb|2Z0T|D Chain D, Crystal Structure Of Hypothetical Protein Ph0355
          Length = 109

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMM-LKVQSVCHYDSF 187
           +++E+ +QE +   IK G + +EGR        I PG +I+     + +KV+ +  Y SF
Sbjct: 1   MKWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSF 60

Query: 188 SEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICIS 233
            EMLE E +  VLPGVK+IEEGV++YR+FY EE+E+  GV+AI I 
Sbjct: 61  KEMLEKEGIENVLPGVKSIEEGVKVYRQFYDEEREKKYGVVAIEIE 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,812,385
Number of Sequences: 62578
Number of extensions: 280428
Number of successful extensions: 625
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 10
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)