BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022686
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2P0T0|PSD_XANOM Phosphatidylserine decarboxylase proenzyme OS=Xanthomonas oryzae
pv. oryzae (strain MAFF 311018) GN=psd PE=3 SV=1
Length = 282
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 161 SIGPGSVILLNKCMMLKVQSVCHYDS-FSEMLEAESLVKVLPGVKTIEEGVQI--YRKFY 217
S+GP +V + + + VCH+D+ F M ++ GV+T+ GV+I Y
Sbjct: 163 SVGPDAVRNVPRLFARNERLVCHFDTDFGPMASVMVGALLVSGVETVWSGVEIPRYGDRI 222
Query: 218 TEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLLG 260
T + R G++ ++MA Y + +L G + LG
Sbjct: 223 TRKDYRGKGIVLEKFAEMARFNYGSTVIVLLPPGVATLDGGLG 265
>sp|Q8PJ17|PSD_XANAC Phosphatidylserine decarboxylase proenzyme OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=psd PE=3 SV=1
Length = 280
Score = 34.7 bits (78), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 161 SIGPGSVILLNKCMMLKVQSVCHYDS-FSEMLEAESLVKVLPGVKTIEEGVQI--YRKFY 217
S+GP +V + + + VCH+D+ F M ++ GV+T+ GV+I Y
Sbjct: 163 SVGPDAVRKVPRLFARNERLVCHFDTEFGPMASVMVGALLVSGVETVWSGVEIPRYGDRI 222
Query: 218 TEEKERSNGVLAICISKMATQPYVTLASIL 247
T + R GV+ ++MA Y + +L
Sbjct: 223 TRKDYRGKGVVLEKFAEMARFNYGSTVIVL 252
>sp|Q5GXQ3|PSD_XANOR Phosphatidylserine decarboxylase proenzyme OS=Xanthomonas oryzae
pv. oryzae (strain KACC10331 / KXO85) GN=psd PE=3 SV=1
Length = 282
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 161 SIGPGSVILLNKCMMLKVQSVCHYDS-FSEMLEAESLVKVLPGVKTIEEGVQI--YRKFY 217
S+GP +V + + + VCH+D+ F M ++ GV+T+ GV+I Y
Sbjct: 163 SVGPDAVRNVPRLFARNERLVCHFDTDFGPMASVMVGALLVSGVETVWSGVEIPRYGDRI 222
Query: 218 TEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLLG 260
T + R G++ ++MA Y + +L G + LG
Sbjct: 223 TRKDYRGKGIVLEKFAEMARFNYGSTVIVLLPPGVATLDGGLG 265
>sp|Q3BRK2|PSD_XANC5 Phosphatidylserine decarboxylase proenzyme OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) GN=psd PE=3
SV=1
Length = 280
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 161 SIGPGSVILLNKCMMLKVQSVCHYDS-FSEMLEAESLVKVLPGVKTIEEGVQI--YRKFY 217
S+GP +V + + + VCH+D+ F M ++ GV+T+ GV+I Y
Sbjct: 163 SVGPDAVRNVPRLFARNERLVCHFDTDFGPMASVMVGALLVSGVETVWSGVEIPRYGDRI 222
Query: 218 TEEKERSNGVLAICISKMATQPYVTLASIL 247
T + R G++ ++MA Y + +L
Sbjct: 223 TRKDYRGKGIVLEKFAEMARFNYGSTVIVL 252
>sp|B2FP04|PSD_STRMK Phosphatidylserine decarboxylase proenzyme OS=Stenotrophomonas
maltophilia (strain K279a) GN=psd PE=3 SV=1
Length = 280
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 161 SIGPGSVILLNKCMMLKVQSVCHYD-SFSEMLEAESLVKVLPGVKTIEEGVQI--YRKFY 217
S+GP +V + + + VCH+D SF M+ ++ GV+T+ G +I Y
Sbjct: 163 SVGPAAVNGVPRLFARNERLVCHFDTSFGPMVSVMVGALLVSGVETVWSGEEIPHYGDRI 222
Query: 218 TEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLLG 260
T + R G+ ++MA Y + +L G LG
Sbjct: 223 TRKDYRGQGIRLERFAEMARFNYGSTVIVLLPPGVADFAPQLG 265
>sp|Q8P7Q6|PSD_XANCP Phosphatidylserine decarboxylase proenzyme OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=psd PE=3 SV=1
Length = 282
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 161 SIGPGSVILLNKCMMLKVQSVCHYDS-FSEMLEAESLVKVLPGVKTIEEGVQI--YRKFY 217
S+GP +V + + + VCH+D+ F M ++ GV+T+ GV+I Y
Sbjct: 163 SVGPDAVRNVPRLFARNERLVCHFDTDFGPMASVMVGALLVSGVETVWSGVEIPRYGDRI 222
Query: 218 TEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLL 259
T + R G+ ++MA Y + +L G ++ L
Sbjct: 223 TRKDYRGKGITLERFAEMARFNYGSTVIVLLPPGVAALEGGL 264
>sp|Q4UWE4|PSD_XANC8 Phosphatidylserine decarboxylase proenzyme OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=psd PE=3 SV=1
Length = 282
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 161 SIGPGSVILLNKCMMLKVQSVCHYDS-FSEMLEAESLVKVLPGVKTIEEGVQI--YRKFY 217
S+GP +V + + + VCH+D+ F M ++ GV+T+ GV+I Y
Sbjct: 163 SVGPDAVRNVPRLFARNERLVCHFDTDFGPMASVMVGALLVSGVETVWSGVEIPRYGDRI 222
Query: 218 TEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLL 259
T + R G+ ++MA Y + +L G ++ L
Sbjct: 223 TRKDYRGKGITLERFAEMARFNYGSTVIVLLPPGVAALEGGL 264
>sp|B0RR72|PSD_XANCB Phosphatidylserine decarboxylase proenzyme OS=Xanthomonas
campestris pv. campestris (strain B100) GN=psd PE=3 SV=1
Length = 282
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 161 SIGPGSVILLNKCMMLKVQSVCHYDS-FSEMLEAESLVKVLPGVKTIEEGVQI--YRKFY 217
S+GP +V + + + VCH+D+ F M ++ GV+T+ GV+I Y
Sbjct: 163 SVGPDAVRNVPRLFARNERLVCHFDTDFGPMASVMVGALLVSGVETVWSGVEIPRYGDRI 222
Query: 218 TEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQSLL 259
T + R G+ ++MA Y + +L G ++ L
Sbjct: 223 TRKDYRGKGITLERFAEMARFNYGSTVIVLLPPGVAALEGGL 264
>sp|B4SQW4|PSD_STRM5 Phosphatidylserine decarboxylase proenzyme OS=Stenotrophomonas
maltophilia (strain R551-3) GN=psd PE=3 SV=1
Length = 280
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 161 SIGPGSVILLNKCMMLKVQSVCHYD-SFSEMLEAESLVKVLPGVKTIEEGVQI--YRKFY 217
S+GP +V + + + VCH+D SF M+ ++ GV+T+ G +I Y
Sbjct: 163 SVGPAAVNGVPRLFARNERLVCHFDTSFGPMVSVMVGALLVSGVETVWSGEEIPAYGDRI 222
Query: 218 TEEKERSNGVLAICISKMATQPYVTLASIL 247
T + R G+ ++MA Y + +L
Sbjct: 223 TRKDYRGQGIQLERFAEMARFNYGSTVIVL 252
>sp|Q8NZ57|PEPDB_STRP8 Probable dipeptidase B OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=pepDB PE=3 SV=1
Length = 499
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 199 VLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQ 256
+LP VKT EGV + K TE+ G I +A + + ILSG YV I+
Sbjct: 146 ILPSVKTAREGVALIAKIVTEK-----GAAEGNIVTLADKDGIWYMEILSGHQYVAIK 198
>sp|Q99XS1|PEPDB_STRP1 Probable dipeptidase B OS=Streptococcus pyogenes serotype M1
GN=pepDB PE=3 SV=1
Length = 498
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 199 VLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQ 256
+LP VKT EGV + K TE+ G I +A + + ILSG YV I+
Sbjct: 146 ILPSVKTAREGVALIAKIVTEK-----GAAEGNIVTLADKDGIWYMEILSGHQYVAIK 198
>sp|Q5X9M0|PEPDB_STRP6 Probable dipeptidase B OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=pepDB PE=3 SV=2
Length = 499
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 199 VLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQ 256
+LP VKT EGV + K TE+ G I +A + + ILSG YV I+
Sbjct: 146 ILPSVKTAREGVALIAKIVTEK-----GAAEGNIVTLADKDGIWYMEILSGHQYVAIK 198
>sp|P0DD27|PEPDB_STRPQ Probable dipeptidase B OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=pepDB PE=3 SV=1
Length = 499
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 199 VLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQ 256
+LP VKT EGV + K TE+ G I +A + + ILSG YV I+
Sbjct: 146 ILPSVKTAREGVALIAKIVTEK-----GAAEGNIVTLADKDGIWYMEILSGHQYVAIK 198
>sp|P0DD26|PEPDB_STRP3 Probable dipeptidase B OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=pepDB PE=3 SV=1
Length = 499
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 199 VLPGVKTIEEGVQIYRKFYTEEKERSNGVLAICISKMATQPYVTLASILSGLGYVGIQ 256
+LP VKT EGV + K TE+ G I +A + + ILSG YV I+
Sbjct: 146 ILPSVKTAREGVALIAKIVTEK-----GAAEGNIVTLADKDGIWYMEILSGHQYVAIK 198
>sp|Q58720|MOBB_METJA Putative molybdopterin-guanine dinucleotide biosynthesis adapter
protein OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=mobB PE=3 SV=1
Length = 234
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 83 NCGAFCRTYKKVALMNEECFLEQKEEEWSQLILNKGSSDLVD--ILKAVEFELHVQEPFF 140
+CG CRT+ K + + E W +L KG +VD I+ AV F V +
Sbjct: 157 HCGYNCRTFVKAVV--------KGEARWDDCVLAKGIKIIVDGKIIPAVPF---VSKIVG 205
Query: 141 SFIKDGLETVEG 152
S IK +ET++G
Sbjct: 206 STIKAMIETLKG 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,191,891
Number of Sequences: 539616
Number of extensions: 4201285
Number of successful extensions: 10124
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 10122
Number of HSP's gapped (non-prelim): 17
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)