Query 022686
Match_columns 293
No_of_seqs 92 out of 111
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 09:31:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z0t_A Putative uncharacterize 100.0 5.6E-41 1.9E-45 273.9 12.3 106 130-235 2-108 (109)
2 1xne_A Hypothetical protein PF 100.0 7.2E-41 2.4E-45 274.5 9.9 108 129-236 2-109 (113)
3 3iuw_A Activating signal coint 99.3 6.4E-12 2.2E-16 98.7 7.0 55 127-184 6-69 (83)
4 1te7_A Hypothetical UPF0267 pr 98.3 1.4E-06 4.8E-11 69.1 6.3 92 132-234 5-102 (103)
5 2kku_A Uncharacterized protein 94.1 0.22 7.7E-06 43.3 8.8 90 133-234 31-138 (161)
6 2dp9_A Hypothetical protein TT 90.5 0.51 1.8E-05 38.3 6.0 56 133-193 11-70 (124)
7 2qcp_X Cation efflux system pr 66.2 4.7 0.00016 30.4 3.3 49 123-171 14-63 (80)
8 2e5o_A Activating signal coint 64.2 4 0.00014 34.4 2.8 29 132-160 9-37 (154)
9 2vb2_X Copper protein, cation 63.0 5.7 0.0002 30.5 3.3 49 123-171 22-71 (88)
10 4gop_B Putative uncharacterize 53.2 27 0.00092 27.8 5.8 51 143-193 59-123 (136)
11 2vl6_A SSO MCM N-TER, minichro 50.9 15 0.0005 32.5 4.2 44 132-176 194-239 (268)
12 1t62_A Conserved hypothetical 50.1 23 0.00079 30.5 5.2 118 108-235 7-149 (166)
13 3kdf_D Replication protein A 3 47.3 32 0.0011 27.3 5.3 51 143-193 54-118 (132)
14 2l55_A SILB,silver efflux prot 47.1 14 0.00047 28.0 3.0 52 133-184 18-74 (82)
15 1vky_A S-adenosylmethionine:tR 47.0 22 0.00076 34.1 5.1 59 160-220 111-178 (347)
16 1ltl_A DNA replication initiat 46.7 15 0.00052 32.8 3.7 44 132-176 181-226 (279)
17 1p9k_A ORF, hypothetical prote 45.6 8.7 0.0003 28.0 1.6 35 140-174 40-74 (79)
18 1dm9_A Hypothetical 15.5 KD pr 45.6 22 0.00075 28.8 4.2 52 141-193 29-87 (133)
19 2k6p_A Uncharacterized protein 43.1 7.9 0.00027 28.8 1.1 40 140-180 20-62 (92)
20 3s9x_A ASCH domain; MCSG, PSI- 40.4 1.3E+02 0.0046 25.6 8.4 112 108-226 12-140 (159)
21 1bxv_A Plastocyanin; copper pr 37.9 21 0.00071 25.4 2.6 24 149-172 2-33 (91)
22 4i1k_A B3 domain-containing tr 34.2 51 0.0018 27.1 4.8 24 148-171 89-126 (146)
23 2pi2_A Replication protein A 3 33.2 64 0.0022 28.7 5.6 57 137-193 87-158 (270)
24 4ham_A LMO2241 protein; struct 32.8 33 0.0011 26.9 3.3 20 69-88 14-33 (134)
25 4hci_A Cupredoxin 1; structura 32.4 19 0.00065 26.7 1.7 28 144-171 10-41 (100)
26 4hik_A Protection of telomeres 32.2 25 0.00087 29.4 2.6 27 146-172 63-93 (143)
27 2pyt_A Ethanolamine utilizatio 30.0 45 0.0015 26.5 3.6 36 133-171 71-106 (133)
28 4hpp_A Probable glutamine synt 29.2 27 0.00092 33.8 2.6 30 230-260 331-362 (443)
29 2gim_A Plastocyanin; beta shee 29.1 28 0.00095 25.6 2.1 15 158-172 20-34 (106)
30 1o5u_A Novel thermotoga mariti 27.3 69 0.0024 24.2 4.1 32 139-172 51-82 (101)
31 3vab_A Diaminopimelate decarbo 27.2 95 0.0033 29.3 5.9 36 160-195 381-438 (443)
32 1pcs_A Plastocyanin; electron 21.8 43 0.0015 24.2 1.9 16 157-172 18-33 (98)
33 3pt3_A E3 ubiquitin-protein li 21.8 20 0.00067 29.0 0.1 24 64-87 92-115 (118)
34 3ng0_A Glutamine synthetase; G 21.4 41 0.0014 32.7 2.2 30 230-260 360-391 (473)
35 3lwc_A Uncharacterized protein 21.1 17 0.0006 28.2 -0.4 37 132-171 54-90 (119)
36 1yy3_A S-adenosylmethionine:tR 20.2 1.3E+02 0.0046 28.7 5.4 57 160-220 104-175 (346)
No 1
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=100.00 E-value=5.6e-41 Score=273.85 Aligned_cols=106 Identities=43% Similarity=0.769 Sum_probs=103.8
Q ss_pred ceeeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEce-eEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022686 130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNK-CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE 208 (293)
Q Consensus 130 e~eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~-~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~SiEE 208 (293)
.|+|+|+++||++|++|+||||||+||+||++|++||+|+||+ ++.|+|++|++|+||++||++||+++|+|+++|+||
T Consensus 2 ~h~m~l~~~~f~~I~~G~KtiEiRlnd~k~~~ikvGD~I~f~~~~l~~~V~~v~~Y~sF~~ll~~e~~~~~~p~~~s~ee 81 (109)
T 2z0t_A 2 KWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSFKEMLEKEGIENVLPGVKSIEE 81 (109)
T ss_dssp EEEECCCHHHHHHHHTTSCCEEEEECCTTGGGCCTTCEEEEGGGTEEEEEEEEEEESCHHHHHHHHCHHHHSTTCCCHHH
T ss_pred eEEEEcChHHHHHHHcCCCEEEEEecchhhhcCCCCCEEEECCCEEEEEEEEEEccCCHHHHHHhcChhhcCCCCCCHHH
Confidence 5999999999999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred HHHHHHhhCCHhHHhhcceEEEEEEec
Q 022686 209 GVQIYRKFYTEEKERSNGVLAICISKM 235 (293)
Q Consensus 209 gv~~yr~iYskEkE~~yGVvAIeI~l~ 235 (293)
|+++||+||++|||++||||||+|++.
T Consensus 82 ~v~~~~~~Y~~e~E~~~GVlaI~i~~~ 108 (109)
T 2z0t_A 82 GVKVYRQFYDEEREKKYGVVAIEIEPI 108 (109)
T ss_dssp HHHHHHTTCCHHHHHHHCEEEEEEEEC
T ss_pred HHHHHHHhCCHHHHHhcCEEEEEEEEc
Confidence 999999999999999999999999974
No 2
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=100.00 E-value=7.2e-41 Score=274.54 Aligned_cols=108 Identities=24% Similarity=0.472 Sum_probs=105.6
Q ss_pred cceeeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEceeEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022686 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE 208 (293)
Q Consensus 129 ~e~eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~SiEE 208 (293)
..|+|+|+++||++|++|+||||||+||+||++|++||+|+|++++.++|++|++|+||++||++|++++|+|+.+|+||
T Consensus 2 ~~h~m~l~~~~F~~I~sG~KtiEiR~nd~~~~~i~vGD~I~f~~~l~~~V~~v~~Y~sF~~ll~~e~~~~v~p~~~s~ee 81 (113)
T 1xne_A 2 KVYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEK 81 (113)
T ss_dssp CEEEECCCHHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEEETTTEEEEEEEEEECSSHHHHHHHSCHHHHCSSCCCHHH
T ss_pred ceEEEecChHHHHHHHcCCcEEEEEecchhhhccCCCCEEEEccceEEEEEEEEecCCHHHHHHhcCHHhcCCCCCCHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCHhHHhhcceEEEEEEecC
Q 022686 209 GVQIYRKFYTEEKERSNGVLAICISKMA 236 (293)
Q Consensus 209 gv~~yr~iYskEkE~~yGVvAIeI~l~~ 236 (293)
|+++||+||++|||++||||||+|++..
T Consensus 82 ~~~~~~~~Y~~e~E~~~GVvaI~i~~~~ 109 (113)
T 1xne_A 82 ALKRFHNMYPKWKEYRYGVLAIKFRVLG 109 (113)
T ss_dssp HHHHHTTSSSSSCCCCCCCEEEEEEESS
T ss_pred HHHHHHHhCCHHHHHhcCEEEEEEEEcc
Confidence 9999999999999999999999999864
No 3
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=99.27 E-value=6.4e-12 Score=98.69 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=48.4
Q ss_pred hccceeeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEc---------eeEEEEEEEEeec
Q 022686 127 KAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN---------KCMMLKVQSVCHY 184 (293)
Q Consensus 127 ~~~e~eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~---------~~l~v~V~~Vr~Y 184 (293)
.+..|+|.|+++||++|++|+||+|+|+||.+ +++||.|+|. +.+.++|+.|.-|
T Consensus 6 ~~~~H~lki~~~~F~~V~~G~Kt~EiR~nDr~---~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i~d~ 69 (83)
T 3iuw_A 6 HPTIHTLKIETEFFKAVKERRKTFEIRKNDRN---FQVGDILILEEYMNGMYLDDECEAEVIYITDY 69 (83)
T ss_dssp CCCEEEEEEEHHHHHHHHTTSCCEEEEECCSC---CCTTCEEEEEEEETTEEEEEEEEEEEEEEECT
T ss_pred cceEEEEEcCHHHHHHHHcCCcEEEEEecccC---CCCCCEEEEEEccCCCccCcEEEEEEEEEccc
Confidence 35679999999999999999999999999954 9999999985 3788899999544
No 4
>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7
Probab=98.26 E-value=1.4e-06 Score=69.08 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=69.7
Q ss_pred eeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEE--c--e--eEEEEEEEEeecCCHHHHHhccCccccCCCCCC
Q 022686 132 ELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILL--N--K--CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKT 205 (293)
Q Consensus 132 eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F--~--~--~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~S 205 (293)
.|.+.+++.++|.+|+||+.+|. .+....++||.+.. + + -..++|++|+ +..|.++=++ .+...|. |
T Consensus 5 ~i~f~~~~~~~Il~G~KT~T~R~--~~e~~~~~Gd~~~v~~~~~~~~~~~i~vt~V~-~~~~~eitee---~A~~EG~-s 77 (103)
T 1te7_A 5 DITFFQRFQDDILAGRKTITIRD--ESESHFKTGDVLRVGRFEDDGYFCTIEVTATS-TVTLDTLTEK---HAEQENM-T 77 (103)
T ss_dssp SCCCCHHHHHHHHTCCCEEEEEC--GGGCCCCTTSEEEEEETTTEEEEEEEEEEEEE-EECSTTTSTH---HHHHTTS-C
T ss_pred EEEEcHHHHHHHHCCCCEEEEeC--CCCCCCCCCCEEEEEECCCCcEEEEEEEEEEE-EEcHHHhCHH---HHHHcCC-C
Confidence 37889999999999999999997 34456899999977 2 1 3556777775 5666666442 1234666 9
Q ss_pred HHHHHHHHHhhCCHhHHhhcceEEEEEEe
Q 022686 206 IEEGVQIYRKFYTEEKERSNGVLAICISK 234 (293)
Q Consensus 206 iEEgv~~yr~iYskEkE~~yGVvAIeI~l 234 (293)
+++-.+.+++||+.+.+ |..|++++
T Consensus 78 l~~~~~~~~~iYp~~~~----v~vI~F~~ 102 (103)
T 1te7_A 78 LTELKKVIADIYPGQTQ----FYVIEFKC 102 (103)
T ss_dssp HHHHHHHHHHHCSCCSC----EEEEEEEC
T ss_pred HHHHHHHHHHHcCCCCC----EEEEEEEE
Confidence 99999999999986544 88888875
No 5
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}
Probab=94.14 E-value=0.22 Score=43.29 Aligned_cols=90 Identities=14% Similarity=0.219 Sum_probs=64.6
Q ss_pred eccchhhHHHHh-cCCceEEEeecCccccCCCCCCEEEEce-------eEEEEEEEEeecCCHHHHHhccCccccCCCCC
Q 022686 133 LHVQEPFFSFIK-DGLETVEGRCTISDYNSIGPGSVILLNK-------CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVK 204 (293)
Q Consensus 133 M~Lqe~yF~lIk-sGkKTIE~RLnDeKrq~IkvGD~I~F~~-------~l~v~V~~Vr~Y~SF~eLLe~Egl~kvlPg~~ 204 (293)
|-|.++|-+.|- +|+|++ +|=.+ -+.++++||.|+|.. .=.++|.+|-.|++-.+|.+..+-. -|.
T Consensus 31 lSIkpey~~rIf~~GkK~f-lrr~~-v~~~l~~Gd~vviYaS~P~~~iVGea~I~~Ii~~~~P~~lWe~~~d~---~gI- 104 (161)
T 2kku_A 31 YPIPKRFMDRFFKKGKDVF-VKPAT-VWKELKPGMKFVFYQSHEDTGFVGEARIKRVVLSENPMQFFETFGDR---VFL- 104 (161)
T ss_dssp ECCSSSTTHHHHHHSCEEE-EESSC-SCTTCCTTEEEEECCCSTTCBCCEEEEEEEEEEESCTHHHHHHTSTT---BSS-
T ss_pred EecCHHHHHHHHhcCceEE-EeccC-cccccCCCCEEEEEEcCCCcEEEEEEEEEEEEecCCHHHHHHHhCcc---cCc-
Confidence 668899999999 999999 76222 456899999999973 3457899999999999999985522 234
Q ss_pred CHHHHHHHHHhhCCHhHHhhcc----------eEEEEEEe
Q 022686 205 TIEEGVQIYRKFYTEEKERSNG----------VLAICISK 234 (293)
Q Consensus 205 SiEEgv~~yr~iYskEkE~~yG----------VvAIeI~l 234 (293)
|-+| +++||. .++. || .+||+|+.
T Consensus 105 Tkee----f~~Yy~-g~~~-w~~~~~~~~~~~~~aI~L~~ 138 (161)
T 2kku_A 105 TKDE----LKEYMK-SQER-WGRRRESKKKKLWMAIELED 138 (161)
T ss_dssp CHHH----HHHHHH-HHHH-TSSCCCCSSCCCEEEEEEEE
T ss_pred CHHH----HHHHhc-cccc-ccccccccccccEEEEEecc
Confidence 4333 444443 3333 33 68888874
No 6
>2dp9_A Hypothetical protein TTHA0113; jellyroll, structural genomics, NPPSFA, national project on structural and functional analyses; 1.90A {Thermus thermophilus} SCOP: b.122.1.5 PDB: 1wk2_A
Probab=90.50 E-value=0.51 Score=38.26 Aligned_cols=56 Identities=27% Similarity=0.204 Sum_probs=40.2
Q ss_pred eccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEc--ee--EEEEEEEEeecCCHHHHHhc
Q 022686 133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN--KC--MMLKVQSVCHYDSFSEMLEA 193 (293)
Q Consensus 133 M~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~--~~--l~v~V~~Vr~Y~SF~eLLe~ 193 (293)
|-+.++|-++|-+|.||+|+|--..++ .|. |.+. .. =.|+|+++..+.|-+++.+.
T Consensus 11 LSIkqpyA~lIl~G~K~~E~R~~~t~~----rg~-v~IhatG~ivG~~~i~d~~g~~~~eel~~~ 70 (124)
T 2dp9_A 11 LIVREPYASLIVDGRKVWEIRRRKTRH----RGP-LGIVSGGRLIGQADLVGVEGPFSVEELLAH 70 (124)
T ss_dssp EECCTTHHHHHHTTCCCEEEESSCCCC----CEE-EEEEETTEEEEEEEEEEEEEEECHHHHGGG
T ss_pred EEEecHHHHHHHCCCceEEeeCCCCCC----CCE-EEEEECCCEEEEEEEEEEecCCCHHHHHHH
Confidence 668999999999999999999876443 254 4443 33 34577787766677776554
No 7
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=66.16 E-value=4.7 Score=30.43 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=40.0
Q ss_pred HhhhhccceeeccchhhHHHHhcCCceEEEeecCc-cccCCCCCCEEEEc
Q 022686 123 VDILKAVEFELHVQEPFFSFIKDGLETVEGRCTIS-DYNSIGPGSVILLN 171 (293)
Q Consensus 123 ~~~l~~~e~eM~Lqe~yF~lIksGkKTIE~RLnDe-Krq~IkvGD~I~F~ 171 (293)
++.+++....+.|.+.+...+.=+.-|...++.++ ....+++||.|.|.
T Consensus 14 V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~ 63 (80)
T 2qcp_X 14 VKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFN 63 (80)
T ss_dssp EEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEE
T ss_pred EEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEE
Confidence 44455555568889888888888889999999876 68999999999996
No 8
>2e5o_A Activating signal cointegrator 1; TRIP4_C domain, ASC- 1, thyroid receptor-interacting protein 4, TRIP-4, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.18 E-value=4 Score=34.38 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=25.3
Q ss_pred eeccchhhHHHHhcCCceEEEeecCcccc
Q 022686 132 ELHVQEPFFSFIKDGLETVEGRCTISDYN 160 (293)
Q Consensus 132 eM~Lqe~yF~lIksGkKTIE~RLnDeKrq 160 (293)
-|-+..+|-.+|..|.|+||+|--..+++
T Consensus 9 aLSirQPwAslIv~G~K~iE~R~W~T~~R 37 (154)
T 2e5o_A 9 CLSVHQPWASLLVRGIKRVEGRSWYTPHR 37 (154)
T ss_dssp EEEECTTHHHHHHHTSCCEEEESSCCCCC
T ss_pred EEEEeCcHHHHHHcCCceeeccCCcCCCC
Confidence 47789999999999999999998776655
No 9
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=63.01 E-value=5.7 Score=30.51 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=40.1
Q ss_pred HhhhhccceeeccchhhHHHHhcCCceEEEeecCc-cccCCCCCCEEEEc
Q 022686 123 VDILKAVEFELHVQEPFFSFIKDGLETVEGRCTIS-DYNSIGPGSVILLN 171 (293)
Q Consensus 123 ~~~l~~~e~eM~Lqe~yF~lIksGkKTIE~RLnDe-Krq~IkvGD~I~F~ 171 (293)
++.+++..-.+.|.+.+...+.=+.-|...++.++ ....+++||.|.|.
T Consensus 22 V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~ 71 (88)
T 2vb2_X 22 VKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFN 71 (88)
T ss_dssp EEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEE
T ss_pred EEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEE
Confidence 44455555568889888888888889999999876 78999999999996
No 10
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=53.17 E-value=27 Score=27.85 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=41.0
Q ss_pred HhcCCceEEEeecCc-------cccCCCCCCEEE-------EceeEEEEEEEEeecCCHHHHHhc
Q 022686 143 IKDGLETVEGRCTIS-------DYNSIGPGSVIL-------LNKCMMLKVQSVCHYDSFSEMLEA 193 (293)
Q Consensus 143 IksGkKTIE~RLnDe-------Krq~IkvGD~I~-------F~~~l~v~V~~Vr~Y~SF~eLLe~ 193 (293)
|.+|+-+|++|+-+. +...+++||.+. |+++..+.+..||.=++|.|+.-+
T Consensus 59 ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~~qi~~~~ir~v~d~Nei~~H 123 (136)
T 4gop_B 59 VEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNRRSISSGHMRPVIDYNEVMFH 123 (136)
T ss_dssp EECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTEEEEEESEEEECSSHHHHHHH
T ss_pred EECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCEEEEEEEEEEECCCccHHHHH
Confidence 567888999998654 467899999987 456788899999999999987654
No 11
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=50.87 E-value=15 Score=32.51 Aligned_cols=44 Identities=16% Similarity=0.115 Sum_probs=37.1
Q ss_pred eeccchhhHHHHhcCC--ceEEEeecCccccCCCCCCEEEEceeEEE
Q 022686 132 ELHVQEPFFSFIKDGL--ETVEGRCTISDYNSIGPGSVILLNKCMML 176 (293)
Q Consensus 132 eM~Lqe~yF~lIksGk--KTIE~RLnDeKrq~IkvGD~I~F~~~l~v 176 (293)
++.|||.+ +.+-.|. .+|++=|.++=-.+++|||.|.++..+.+
T Consensus 194 ~ikiQE~p-e~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~ 239 (268)
T 2vl6_A 194 KAVIQERP-EEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDI 239 (268)
T ss_dssp EEEEECCG-GGSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEE
T ss_pred EEEEEeCC-CCCCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEE
Confidence 58888887 5677888 79999999999999999999998765443
No 12
>1t62_A Conserved hypothetical protein; NYSGXRC, target T1587, unknown function, PSI, protein struct initiative; 3.00A {Enterococcus faecalis} SCOP: b.122.1.4
Probab=50.15 E-value=23 Score=30.50 Aligned_cols=118 Identities=11% Similarity=0.074 Sum_probs=67.8
Q ss_pred HHHHHHHhhcCchhHHhhhhccceeecc-----chhhHHHHhcCCceEEEeecCc----cccCCCCCCEEEEce------
Q 022686 108 EEWSQLILNKGSSDLVDILKAVEFELHV-----QEPFFSFIKDGLETVEGRCTIS----DYNSIGPGSVILLNK------ 172 (293)
Q Consensus 108 ~~w~~l~~~kG~~el~~~l~~~e~eM~L-----qe~yF~lIksGkKTIE~RLnDe----Krq~IkvGD~I~F~~------ 172 (293)
+=|++.....+.. .+ ....|.++- .++..++|.+|+||--.++.+. .-.--++||.=+..+
T Consensus 7 ~~W~~y~~~~~~~--~~--~~~~~~FG~~~~~lad~L~~LVl~G~KTAT~s~~~~Y~~~~e~lP~vG~~~Ivld~~g~pv 82 (166)
T 1t62_A 7 VFWQNFLDKHELD--ML--MPDVWMFGDGSSEMGNRLGQLVVSGRKTATCSSLDIYKMEEEQLPKAGQYDIILDGQSQPL 82 (166)
T ss_dssp HHHHHHHHHHCCC--CC--CCEEECCSSSCHHHHHHHHHHHHHTSCCEEEEESTTSCTTTCCCCCTTCEEEEECTTSCEE
T ss_pred HHHHHHHHhccCc--cC--CcceeecCCCCHHHHHHHHHHHHcCCeEEEecCHHHHhhcCCCCCCCCcEEEEEcCCCCEE
Confidence 4588876544331 11 335566665 5679999999999999998643 112348996554432
Q ss_pred -eEEEEEEEEeecCCHHHHH-hccCccccCCCCCCHHHHHHHHHhhCCHhHHhhcc--------eEEEEEEec
Q 022686 173 -CMMLKVQSVCHYDSFSEML-EAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNG--------VLAICISKM 235 (293)
Q Consensus 173 -~l~v~V~~Vr~Y~SF~eLL-e~Egl~kvlPg~~SiEEgv~~yr~iYskEkE~~yG--------VvAIeI~l~ 235 (293)
.+.++-+.+.+|..-.+=. ..| ..|..|++.=-+.-..||++|-.. .| ||..++++.
T Consensus 83 cii~tt~V~~~pf~eVt~e~A~~E-----GEGD~Sl~~Wr~~H~~ff~~e~~~-~g~~f~~d~~vV~E~FevV 149 (166)
T 1t62_A 83 AIIRTTKVEIMPMNKVSESFAQAE-----GEGDLTLDYWYEEHARFFKEELAP-YQLQFYPDMLLVCQSFEVV 149 (166)
T ss_dssp EEEEEEEEEEEEGGGCCHHHHHHH-----C-----CTHHHHHHHHHHHHHHTT-TTCCCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEEEEEcccCCHHHHHHh-----CCCCCCHHHHHHHHHHHHHHHHHh-cCCCCCCCceEEEEEEEEE
Confidence 4555555566665432211 111 245568888888888888875432 33 466666653
No 13
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=47.28 E-value=32 Score=27.29 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=39.2
Q ss_pred HhcCCc-eEEEeecCc------cccCCCCCCEEE-------EceeEEEEEEEEeecCCHHHHHhc
Q 022686 143 IKDGLE-TVEGRCTIS------DYNSIGPGSVIL-------LNKCMMLKVQSVCHYDSFSEMLEA 193 (293)
Q Consensus 143 IksGkK-TIE~RLnDe------Krq~IkvGD~I~-------F~~~l~v~V~~Vr~Y~SF~eLLe~ 193 (293)
|.+|+- +||+|.-+. ....+++||.+. |+++..+.+..||.=++|.|+.-+
T Consensus 54 ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g~~qi~~~~ir~v~d~Nei~~H 118 (132)
T 3kdf_D 54 IDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTH 118 (132)
T ss_dssp EECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETTEEEEEEEEEEECSSTHHHHHH
T ss_pred EECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECCEEEEEEEEEEEcCCccHHHHH
Confidence 567877 999998654 267899999987 456788889999999999887543
No 14
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=47.10 E-value=14 Score=28.05 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=40.4
Q ss_pred eccchhhHHHHhcCCceEEEeecCc-cccCCCCCCEEEEce---eE-EEEEEEEeec
Q 022686 133 LHVQEPFFSFIKDGLETVEGRCTIS-DYNSIGPGSVILLNK---CM-MLKVQSVCHY 184 (293)
Q Consensus 133 M~Lqe~yF~lIksGkKTIE~RLnDe-Krq~IkvGD~I~F~~---~l-~v~V~~Vr~Y 184 (293)
+.|.+.+...+.=..=|...++.+. ..+.+++||.|.|.= .- .-.|++|+.=
T Consensus 18 iTi~H~pI~~l~wPaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~ 74 (82)
T 2l55_A 18 LIIAHEAIPSAQWGAMTMEFAAPPAGLPQGLKAGDRVAFSFRLDPHGMATLVTVAPQ 74 (82)
T ss_dssp EEEEECCCTTTTCCCEEEEEECCTTCCCSSCSTTCEEEEEEEEETTTEEEEEEEEEC
T ss_pred EEEecCCccccCCCceEEEEEcCChhHhhcCCCCCEEEEEEEECCCCeEEEEEEEec
Confidence 7888888888888888999999865 689999999999961 11 3456777653
No 15
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase-ISOM; TM0574, struct genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1
Probab=46.97 E-value=22 Score=34.06 Aligned_cols=59 Identities=12% Similarity=0.218 Sum_probs=27.2
Q ss_pred cCCCCCCEEEEceeEEEEEEEEe---------ecCCHHHHHhccCccccCCCCCCHHHHHHHHHhhCCHh
Q 022686 160 NSIGPGSVILLNKCMMLKVQSVC---------HYDSFSEMLEAESLVKVLPGVKTIEEGVQIYRKFYTEE 220 (293)
Q Consensus 160 q~IkvGD~I~F~~~l~v~V~~Vr---------~Y~SF~eLLe~Egl~kvlPg~~SiEEgv~~yr~iYskE 220 (293)
+++|+|+.|.|.+.+.++|.+.. .|+. .++|++.|--. +|-.=..+.-.+.|...|.++
T Consensus 111 kk~k~G~~l~f~~~l~a~v~~~~~~g~r~~~f~~~~-~~~L~~~G~~P-LPPYI~r~~D~erYQTVyAk~ 178 (347)
T 1vky_A 111 QKVKKGTELVIDEDLSAVCLGRGEDGTRILKFQPQD-DRLIFEKGRTP-LPPYIKNEVPLERYQTVYAKE 178 (347)
T ss_dssp TTCCTTCEEEEETTEEEEEEEECTTSCEEEEEESCC-HHHHHHHC-------------------------
T ss_pred CCCCCCCEEEeCCCeEEEEEEeeCCCcEEEEEecCC-HHHHHhCCCCC-CCCccCCCCChHHcchhhcCC
Confidence 68999999999876888888752 2466 78888855222 333311122356688888753
No 16
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=46.68 E-value=15 Score=32.80 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=37.6
Q ss_pred eeccchhhHHHHhcCC--ceEEEeecCccccCCCCCCEEEEceeEEE
Q 022686 132 ELHVQEPFFSFIKDGL--ETVEGRCTISDYNSIGPGSVILLNKCMML 176 (293)
Q Consensus 132 eM~Lqe~yF~lIksGk--KTIE~RLnDeKrq~IkvGD~I~F~~~l~v 176 (293)
++.|||.+ +.+-.|. .+|++=|.++=-..++|||.|.++..+.+
T Consensus 181 ~ikiQE~p-e~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~ 226 (279)
T 1ltl_A 181 TLKLQEPL-ENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRT 226 (279)
T ss_dssp EEEEECCS-TTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEE
T ss_pred EEEEecCc-ccCCCCCCCeEEEEEEcccccCccCCCCEEEEEEEEEE
Confidence 58888887 6677888 79999999999999999999999875544
No 17
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=45.56 E-value=8.7 Score=28.03 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=26.4
Q ss_pred HHHHhcCCceEEEeecCccccCCCCCCEEEEceeE
Q 022686 140 FSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCM 174 (293)
Q Consensus 140 F~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~~l 174 (293)
-.+|++|.=+|-++.......++++||.|.+.+..
T Consensus 40 ~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~~~ 74 (79)
T 1p9k_A 40 KIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHS 74 (79)
T ss_dssp SHHHHHHHHEETTBCCCCSSCCCCSSEEEEETTEE
T ss_pred HHHHHCCEEEECCEEecCCCCCCCCCCEEEECCEE
Confidence 35788888777777665567789999999998643
No 18
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=45.55 E-value=22 Score=28.84 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=33.4
Q ss_pred HHHhcCCceEEEeecCccccCCCCCCEEEEc---eeEEEEEEEEeec----CCHHHHHhc
Q 022686 141 SFIKDGLETVEGRCTISDYNSIGPGSVILLN---KCMMLKVQSVCHY----DSFSEMLEA 193 (293)
Q Consensus 141 ~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~---~~l~v~V~~Vr~Y----~SF~eLLe~ 193 (293)
.+|++|.=+|-++.. ..-..|++||.|.+. ....++|.++-.- +..+.||+.
T Consensus 29 ~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~~~~~~~v~~~~~~r~~a~~a~~lYed 87 (133)
T 1dm9_A 29 EMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEE 87 (133)
T ss_dssp HHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEEEEECEEESCCCCHHHHGGGEEE
T ss_pred HHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCCceeeEEEccccccCCCcHHhhhheEE
Confidence 467888755555543 344579999999886 3577777776433 235556654
No 19
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=43.07 E-value=7.9 Score=28.75 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=26.6
Q ss_pred HHHHhcCCceEEEeecCccccCCCCCCEEEEce---eEEEEEEE
Q 022686 140 FSFIKDGLETVEGRCTISDYNSIGPGSVILLNK---CMMLKVQS 180 (293)
Q Consensus 140 F~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~---~l~v~V~~ 180 (293)
-.+|++|.=+|-++.. ..-.++++||.|.+.- ....+|.+
T Consensus 20 ~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~~~~~~~ 62 (92)
T 2k6p_A 20 TDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEEYTILQ 62 (92)
T ss_dssp CCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEEEEECC
T ss_pred HHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceEEEEEec
Confidence 3578888855655554 3456799999999862 44555544
No 20
>3s9x_A ASCH domain; MCSG, PSI-2, structural genomics, midwest center for structu genomics, unknown function; 1.35A {Vibrio cholerae tma 21}
Probab=40.37 E-value=1.3e+02 Score=25.63 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=72.1
Q ss_pred HHHHHHHhhcCchhHHhhhhc-cceeec----cchhhHHHHhcCCceEEEeecCc----cccCCCCCCEEEEce------
Q 022686 108 EEWSQLILNKGSSDLVDILKA-VEFELH----VQEPFFSFIKDGLETVEGRCTIS----DYNSIGPGSVILLNK------ 172 (293)
Q Consensus 108 ~~w~~l~~~kG~~el~~~l~~-~e~eM~----Lqe~yF~lIksGkKTIE~RLnDe----Krq~IkvGD~I~F~~------ 172 (293)
+=|++-....+. ...+-++. ..|.++ +.++-.++|.+|+||---.+.+. .-.--++||.=+..+
T Consensus 12 ~~W~~y~~~~~~-~~~~~~~~~~a~~Fgd~~~~ad~La~LVl~G~KTAT~s~~~~Y~~e~E~lP~vG~~~IvlD~~g~Pv 90 (159)
T 3s9x_A 12 LFLEQYLSSVSR-EVSEKYTSFSADYFCADEYNANVCADLILRGEKRASCSLEYWYSQKGELMPQVGHLQVVTNWDGKPI 90 (159)
T ss_dssp HHHHHHHHTSCH-HHHHTCCCEEEECSSSSHHHHHHHHHHHHTTSCCEEEEETHHHHTTCCCCCCTTCEEEEECTTCCEE
T ss_pred HHHHHHHHhCch-hhhccCCCceeEecCCChhhHHHHHHHHHcCCcEEEecCHhhhhhcCCCCCCcCCEEEEECCCCCEE
Confidence 559999887777 44444333 244555 34667899999999999999752 112337899766653
Q ss_pred -eEEEEEEEEeecCCHHHH-HhccCccccCCCCCCHHHHHHHHHhhCCHhHHhhcc
Q 022686 173 -CMMLKVQSVCHYDSFSEM-LEAESLVKVLPGVKTIEEGVQIYRKFYTEEKERSNG 226 (293)
Q Consensus 173 -~l~v~V~~Vr~Y~SF~eL-Le~Egl~kvlPg~~SiEEgv~~yr~iYskEkE~~yG 226 (293)
.+.+..++|..|..-.+= -..| ..|..|++.==+.-..||++|-.. .|
T Consensus 91 ciI~tt~V~~~pf~~Vt~e~A~~E-----GEGD~sl~~WR~~H~~ff~~e~~~-~g 140 (159)
T 3s9x_A 91 CIIEITSVSKCQYNQVSEDFAASE-----GEGDKSLAWWQEAHRNFFSRECHE-LG 140 (159)
T ss_dssp EEEEEEEEEEEEGGGCCHHHHHHH-----CCTTSCHHHHHHHHHHHHHHHHHH-HT
T ss_pred EEEEEEEEEEEEcccCCHHHHHHh-----CCCCchHHHHHHHHHHHHHHHHHh-cC
Confidence 455566666666654322 2222 246668887778888888877443 44
No 21
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=37.88 E-value=21 Score=25.36 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=16.9
Q ss_pred eEEEeecC--------ccccCCCCCCEEEEce
Q 022686 149 TVEGRCTI--------SDYNSIGPGSVILLNK 172 (293)
Q Consensus 149 TIE~RLnD--------eKrq~IkvGD~I~F~~ 172 (293)
||+|.+.+ +..-.+++||.|.|.+
T Consensus 2 ~~~v~~~~~~~~~~f~P~~i~v~~Gd~V~~~n 33 (91)
T 1bxv_A 2 TVAIKMGADNGMLAFEPSTIEIQAGDTVQWVN 33 (91)
T ss_dssp EEEEEESCTTSCSSEESSEEEECTTCEEEEEE
T ss_pred eEEEEEecCCCccEEeCCEEEECCCCEEEEEE
Confidence 55565543 2456789999999975
No 22
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=34.19 E-value=51 Score=27.09 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=18.4
Q ss_pred ceEEEeecCc--------------cccCCCCCCEEEEc
Q 022686 148 ETVEGRCTIS--------------DYNSIGPGSVILLN 171 (293)
Q Consensus 148 KTIE~RLnDe--------------Krq~IkvGD~I~F~ 171 (293)
|++++|+... +-.+|+.||.++|.
T Consensus 89 k~W~v~~~~~~~~~~ls~GW~~Fv~dn~L~~GD~cvFe 126 (146)
T 4i1k_A 89 KQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFE 126 (146)
T ss_dssp EEEEEEEEEETTEEEECTTHHHHHHHTTCCTTCEEEEE
T ss_pred cEEEEEEEEeCCcEEECCchHHHHHHcCCCCCCEEEEE
Confidence 8888877532 23789999999996
No 23
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=33.18 E-value=64 Score=28.68 Aligned_cols=57 Identities=11% Similarity=0.163 Sum_probs=41.6
Q ss_pred hhhHHH-HhcCCc-eEEEeecCc------cccCCCCCCEEE-------EceeEEEEEEEEeecCCHHHHHhc
Q 022686 137 EPFFSF-IKDGLE-TVEGRCTIS------DYNSIGPGSVIL-------LNKCMMLKVQSVCHYDSFSEMLEA 193 (293)
Q Consensus 137 e~yF~l-IksGkK-TIE~RLnDe------Krq~IkvGD~I~-------F~~~l~v~V~~Vr~Y~SF~eLLe~ 193 (293)
..|+.+ |.+|+- +|++|+-+. ....+++|+.|. |+++..+.+..||.=++|.++.-+
T Consensus 87 ~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~g~~qi~i~~ir~v~d~nEi~~H 158 (270)
T 2pi2_A 87 PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTH 158 (270)
T ss_dssp SSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETTEEEEEEEEEEECSCTHHHHHH
T ss_pred cceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecCCeeEEEEEEEEecCCHhHHHHH
Confidence 344443 557776 899998744 257789999887 456888899999999999887433
No 24
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=32.84 E-value=33 Score=26.89 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhhcCCcc
Q 022686 69 PLYKRLALALCRSVNCGAFC 88 (293)
Q Consensus 69 pl~~~la~~l~~~~~~~~~~ 88 (293)
|||+.++..|.+.|.+|.+.
T Consensus 14 PlY~QI~~~i~~~I~~G~l~ 33 (134)
T 4ham_A 14 PIYEQIVQKIKEQVVKGVLQ 33 (134)
T ss_dssp CHHHHHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHHHHHHcCCCC
Confidence 69999999999999999974
No 25
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=32.35 E-value=19 Score=26.68 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=19.8
Q ss_pred hcCCceEEEeecCccc----cCCCCCCEEEEc
Q 022686 144 KDGLETVEGRCTISDY----NSIGPGSVILLN 171 (293)
Q Consensus 144 ksGkKTIE~RLnDeKr----q~IkvGD~I~F~ 171 (293)
.++.++|||.+.|-++ -.|++||.|.|.
T Consensus 10 ~a~~~~v~V~~~~~~F~P~~i~v~~G~tV~~~ 41 (100)
T 4hci_A 10 IASAKVIEVELNDDYFNPNVITIPINESTTLL 41 (100)
T ss_dssp ----CCEEEEEETTEEESSEEEECTTSCEEEE
T ss_pred CCCCcEEEEEEECCEEeCCEEEECCCCEEEEE
Confidence 3578899999987644 578999999883
No 26
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=32.16 E-value=25 Score=29.40 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=24.1
Q ss_pred CCceEEEeecCc----cccCCCCCCEEEEce
Q 022686 146 GLETVEGRCTIS----DYNSIGPGSVILLNK 172 (293)
Q Consensus 146 GkKTIE~RLnDe----Krq~IkvGD~I~F~~ 172 (293)
|+.|+.|-|.|+ -|+.+++||.+.+.|
T Consensus 63 G~~tlqVtlwd~ha~~ar~~lk~Gd~v~L~N 93 (143)
T 4hik_A 63 GRFSIRCILWDEHDFYCRNYIKEGDYVVMKN 93 (143)
T ss_dssp BSCCEEEEECHHHHHHHTTTCCTTCEEEEEE
T ss_pred CcEEEEEEEECcHHHHHHhhCCCCCEEEEEe
Confidence 999999999998 457899999999976
No 27
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=30.02 E-value=45 Score=26.48 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=25.3
Q ss_pred eccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEc
Q 022686 133 LHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN 171 (293)
Q Consensus 133 M~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~ 171 (293)
.+-...-|-.|-+|+=+|++ + ++...+++||.|.|.
T Consensus 71 ~h~~~~E~~~VLeG~~~l~~--~-g~~~~l~~GD~i~~p 106 (133)
T 2pyt_A 71 WTLNYDEIDMVLEGELHVRH--E-GETMIAKAGDVMFIP 106 (133)
T ss_dssp EECSSEEEEEEEEEEEEEEE--T-TEEEEEETTCEEEEC
T ss_pred ccCCCCEEEEEEECEEEEEE--C-CEEEEECCCcEEEEC
Confidence 34444556677888766655 4 555589999999996
No 28
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}
Probab=29.24 E-value=27 Score=33.79 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=24.3
Q ss_pred EEEEe--cCCCchHHHHHHHhccCchhhHHhhh
Q 022686 230 ICISK--MATQPYVTLASILSGLGYVGIQSLLG 260 (293)
Q Consensus 230 IeI~l--~~~qP~~~l~~~l~~l~~~g~~~llg 260 (293)
||++. +++.||.++|.||.. |.+||++=|-
T Consensus 331 iE~R~pd~~aNPYLa~AaiLaA-Gl~GI~~~l~ 362 (443)
T 4hpp_A 331 LEFRPMDATTCPHLAMAAVLIA-GRLGIERRLP 362 (443)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH-HHHHHHTTCC
T ss_pred EEEcCCCCCcCHHHHHHHHHHH-HHHHHHhCCC
Confidence 66666 559999999999987 8999987554
No 29
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=29.08 E-value=28 Score=25.56 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=12.0
Q ss_pred cccCCCCCCEEEEce
Q 022686 158 DYNSIGPGSVILLNK 172 (293)
Q Consensus 158 Krq~IkvGD~I~F~~ 172 (293)
..-.+++||+|.|.|
T Consensus 20 ~~i~v~~Gd~V~~~n 34 (106)
T 2gim_A 20 AKLTIKPGDTVEFLN 34 (106)
T ss_dssp SEEEECTTCEEEEEE
T ss_pred CEEEECCCCEEEEEE
Confidence 455789999999964
No 30
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=27.27 E-value=69 Score=24.23 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=23.7
Q ss_pred hHHHHhcCCceEEEeecCccccCCCCCCEEEEce
Q 022686 139 FFSFIKDGLETVEGRCTISDYNSIGPGSVILLNK 172 (293)
Q Consensus 139 yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~~ 172 (293)
-|-+|.+|+=+ +++++++...+++||.|.|..
T Consensus 51 E~~~Vl~G~~~--~~i~~g~~~~l~~GD~i~ip~ 82 (101)
T 1o5u_A 51 ETCYILEGKVE--VTTEDGKKYVIEKGDLVTFPK 82 (101)
T ss_dssp EEEEEEEEEEE--EEETTCCEEEEETTCEEEECT
T ss_pred EEEEEEeCEEE--EEECCCCEEEECCCCEEEECC
Confidence 34567777644 455657888999999999973
No 31
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=27.22 E-value=95 Score=29.27 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=27.2
Q ss_pred cCCCCCCEEEEce-------------------eEEE---EEEEEeecCCHHHHHhccC
Q 022686 160 NSIGPGSVILLNK-------------------CMML---KVQSVCHYDSFSEMLEAES 195 (293)
Q Consensus 160 q~IkvGD~I~F~~-------------------~l~v---~V~~Vr~Y~SF~eLLe~Eg 195 (293)
..+++||+|.|.+ .+.+ ++.-||+..||++|+..+-
T Consensus 381 p~l~~GD~l~~~~~GAY~~~~ss~fN~~~~p~~v~v~~~~~~~ir~ret~~dl~~~~~ 438 (443)
T 3vab_A 381 AKPAPGDLIAICTTGAYGAVLSSTYNSRLLIPEVLGDGERYHVVRPRRTYEELLALDS 438 (443)
T ss_dssp ECCCTTCEEEEESCTTTTGGGCCCGGGCCCCCEEEEETTEEEEEECCCCHHHHHHTSC
T ss_pred CCCCCCCEEEEeCCCcCchhhhccccCCCCCcEEEEECCeEEEEEecCCHHHHHhccc
Confidence 3689999999962 2222 4556999999999998764
No 32
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=21.83 E-value=43 Score=24.23 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=12.8
Q ss_pred ccccCCCCCCEEEEce
Q 022686 157 SDYNSIGPGSVILLNK 172 (293)
Q Consensus 157 eKrq~IkvGD~I~F~~ 172 (293)
+..-.+++||.|.|.|
T Consensus 18 P~~i~v~~G~~V~~~n 33 (98)
T 1pcs_A 18 PSTVTIKAGEEVKWVN 33 (98)
T ss_dssp SSEEEECTTCEEEEEE
T ss_pred CCEEEECCCCEEEEEE
Confidence 4556789999999975
No 33
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=21.78 E-value=20 Score=29.04 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=18.6
Q ss_pred CCCChHHHHHHHHHHHhhhhcCCc
Q 022686 64 GVPLYPLYKRLALALCRSVNCGAF 87 (293)
Q Consensus 64 gvp~ypl~~~la~~l~~~~~~~~~ 87 (293)
-.|.|+=++.|...|..+|+++.|
T Consensus 92 ~LP~Y~s~e~L~~kL~~AI~~~gf 115 (118)
T 3pt3_A 92 YVPLYSSKQILKQKLLLAIKTKNF 115 (118)
T ss_dssp EEECCSSHHHHHHHHHHHHC----
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCc
Confidence 478999999999999999998765
No 34
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=21.39 E-value=41 Score=32.66 Aligned_cols=30 Identities=23% Similarity=0.530 Sum_probs=23.5
Q ss_pred EEEEe--cCCCchHHHHHHHhccCchhhHHhhh
Q 022686 230 ICISK--MATQPYVTLASILSGLGYVGIQSLLG 260 (293)
Q Consensus 230 IeI~l--~~~qP~~~l~~~l~~l~~~g~~~llg 260 (293)
||++. +++.||.++|.+|.. |.+||++=|-
T Consensus 360 iE~R~pd~~aNPYLa~Aa~LaA-GldGI~~~l~ 391 (473)
T 3ng0_A 360 LEFRCPDATSNPYLAFAAMLCA-GIDGIKNQID 391 (473)
T ss_dssp EEECSCCTTSCHHHHHHHHHHH-HHHHHHHCCC
T ss_pred EEeecCCCCCCHHHHHHHHHHH-HHHHHHhCCC
Confidence 44444 559999999999975 8999998654
No 35
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=21.14 E-value=17 Score=28.24 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=28.2
Q ss_pred eeccchhhHHHHhcCCceEEEeecCccccCCCCCCEEEEc
Q 022686 132 ELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN 171 (293)
Q Consensus 132 eM~Lqe~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~ 171 (293)
..|...+-+-+|-+|+=++++ +++...+++||.|.|-
T Consensus 54 ~~H~~~~E~~~Vl~G~~~~~~---~g~~~~l~~GD~v~ip 90 (119)
T 3lwc_A 54 TETMAVDDVMIVLEGRLSVST---DGETVTAGPGEIVYMP 90 (119)
T ss_dssp EEECSSEEEEEEEEEEEEEEE---TTEEEEECTTCEEEEC
T ss_pred CccCCCCEEEEEEeCEEEEEE---CCEEEEECCCCEEEEC
Confidence 334455666788889877776 5677889999999995
No 36
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=20.20 E-value=1.3e+02 Score=28.70 Aligned_cols=57 Identities=26% Similarity=0.476 Sum_probs=31.3
Q ss_pred cCCCCCCEEEEcee-EEEEEEEE-------ee--cC-CHHHHHhccCcccc-CCCCCCHHH---HHHHHHhhCCHh
Q 022686 160 NSIGPGSVILLNKC-MMLKVQSV-------CH--YD-SFSEMLEAESLVKV-LPGVKTIEE---GVQIYRKFYTEE 220 (293)
Q Consensus 160 q~IkvGD~I~F~~~-l~v~V~~V-------r~--Y~-SF~eLLe~Egl~kv-lPg~~SiEE---gv~~yr~iYskE 220 (293)
+++|+|+.|.|.+. +.++|++. -+ |+ .|.++|++.| .+ +|-. |.+ -.+.|...|.++
T Consensus 104 kk~k~G~~l~f~~~~l~a~v~~~~~~g~r~~~f~~~~~~~~~L~~~G--~~PLPPY--I~r~~~D~erYQTVyAk~ 175 (346)
T 1yy3_A 104 KRVKKGTVVTFGDGRLKAICTEELEHGGRKMEFQYDGIFYEVLESLG--EMPLPPY--IKEQLDDKERYQTVYSKE 175 (346)
T ss_dssp GGSCTTCEEEETTSSSEEEEEEECTTSCEEEEEECSSCHHHHHHHHH--TCCCCHH--HHTTSSSCC---------
T ss_pred CCCCCCCEEEECCCcEEEEEEEeeCCCcEEEEEecCCcHHHHHHHCC--CCCCCcc--cCCCCCChhhchhhhcCC
Confidence 58999999999864 88888865 22 34 5999999855 33 3321 221 234577777753
Done!