Query 022688
Match_columns 293
No_of_seqs 278 out of 2832
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:25:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0105 Alternative splicing f 100.0 5.9E-31 1.3E-35 199.5 21.6 193 1-205 1-193 (241)
2 TIGR01659 sex-lethal sex-letha 100.0 2.6E-31 5.6E-36 231.3 20.3 163 4-203 105-274 (346)
3 TIGR01645 half-pint poly-U bin 100.0 2.9E-29 6.3E-34 229.4 20.8 174 4-205 105-285 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.1E-28 2.3E-33 218.9 20.9 163 4-203 1-170 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.6E-27 5.6E-32 210.1 24.2 196 5-204 88-349 (352)
6 TIGR01622 SF-CC1 splicing fact 100.0 7.1E-28 1.5E-32 220.8 21.1 171 4-202 87-264 (457)
7 KOG0148 Apoptosis-promoting RN 100.0 9.8E-28 2.1E-32 192.3 15.0 171 8-203 64-237 (321)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.3E-27 2E-31 213.5 21.8 170 5-202 1-172 (481)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.7E-26 8.1E-31 209.5 24.2 193 4-202 273-478 (481)
10 TIGR01648 hnRNP-R-Q heterogene 99.9 1.1E-25 2.3E-30 205.8 23.8 191 5-203 57-306 (578)
11 TIGR01628 PABP-1234 polyadenyl 99.9 2.2E-26 4.8E-31 215.8 19.9 158 8-202 2-165 (562)
12 TIGR01628 PABP-1234 polyadenyl 99.9 6.6E-26 1.4E-30 212.5 18.4 179 5-204 177-364 (562)
13 KOG0145 RNA-binding protein EL 99.9 6.4E-26 1.4E-30 181.0 14.5 164 4-204 39-209 (360)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.9E-25 8.5E-30 205.3 22.2 186 3-202 172-373 (509)
15 KOG0144 RNA-binding protein CU 99.9 7.1E-26 1.5E-30 192.3 13.4 170 4-208 32-210 (510)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 8.5E-25 1.8E-29 203.1 21.7 188 4-202 293-500 (509)
17 KOG0117 Heterogeneous nuclear 99.9 4.1E-25 8.9E-30 188.5 16.4 189 6-202 83-329 (506)
18 KOG0109 RNA-binding protein LA 99.9 1.3E-25 2.9E-30 181.8 11.6 146 7-202 3-148 (346)
19 KOG0131 Splicing factor 3b, su 99.9 3.6E-25 7.8E-30 167.8 12.8 163 4-204 7-177 (203)
20 TIGR01622 SF-CC1 splicing fact 99.9 6.4E-24 1.4E-28 194.7 22.8 193 6-202 186-446 (457)
21 KOG0127 Nucleolar protein fibr 99.9 5.3E-24 1.2E-28 185.7 16.0 184 7-203 6-195 (678)
22 KOG0145 RNA-binding protein EL 99.9 8.7E-24 1.9E-28 168.8 15.5 192 6-201 127-355 (360)
23 KOG0106 Alternative splicing f 99.9 3.6E-23 7.7E-28 164.9 12.7 164 7-198 2-165 (216)
24 KOG0124 Polypyrimidine tract-b 99.9 6.2E-23 1.3E-27 171.2 12.1 171 7-205 114-291 (544)
25 KOG0127 Nucleolar protein fibr 99.9 7.5E-22 1.6E-26 172.4 19.2 194 5-202 116-376 (678)
26 KOG0123 Polyadenylate-binding 99.9 5.3E-21 1.2E-25 167.6 16.8 151 7-205 2-154 (369)
27 KOG0110 RNA-binding protein (R 99.9 4.5E-21 9.7E-26 172.5 13.6 166 8-203 517-692 (725)
28 KOG0107 Alternative splicing f 99.8 1.6E-19 3.4E-24 136.5 17.2 78 4-83 8-85 (195)
29 KOG0107 Alternative splicing f 99.8 4.3E-20 9.3E-25 139.5 13.8 79 123-206 9-87 (195)
30 KOG4206 Spliceosomal protein s 99.8 7.1E-19 1.5E-23 138.9 18.5 186 2-188 5-209 (221)
31 KOG0123 Polyadenylate-binding 99.8 1.1E-19 2.3E-24 159.4 15.5 168 4-203 74-245 (369)
32 KOG4207 Predicted splicing fac 99.8 8.2E-20 1.8E-24 141.4 12.6 79 5-83 12-93 (256)
33 KOG0144 RNA-binding protein CU 99.8 6.3E-20 1.4E-24 156.3 12.3 80 5-84 123-207 (510)
34 TIGR01645 half-pint poly-U bin 99.8 2.1E-18 4.5E-23 158.5 22.8 79 5-83 203-284 (612)
35 KOG0146 RNA-binding protein ET 99.8 2.8E-19 6.2E-24 143.6 14.3 192 4-199 17-360 (371)
36 PLN03134 glycine-rich RNA-bind 99.8 5.5E-19 1.2E-23 135.5 14.6 80 4-83 32-114 (144)
37 KOG0148 Apoptosis-promoting RN 99.8 1.1E-19 2.4E-24 146.2 11.2 139 1-205 1-143 (321)
38 KOG1457 RNA binding protein (c 99.8 1.7E-18 3.6E-23 135.8 15.0 192 5-196 33-283 (284)
39 KOG4205 RNA-binding protein mu 99.8 9.9E-19 2.1E-23 148.3 11.4 167 1-202 1-174 (311)
40 KOG0147 Transcriptional coacti 99.8 1.1E-19 2.4E-24 159.5 5.7 171 4-200 177-354 (549)
41 KOG0147 Transcriptional coacti 99.8 1.1E-17 2.5E-22 146.9 13.8 189 8-201 280-525 (549)
42 KOG0113 U1 small nuclear ribon 99.8 4.9E-17 1.1E-21 132.8 16.2 81 3-83 98-181 (335)
43 KOG4676 Splicing factor, argin 99.7 1.3E-18 2.8E-23 146.6 5.5 185 1-187 1-213 (479)
44 KOG1190 Polypyrimidine tract-b 99.7 3.1E-16 6.7E-21 133.2 18.4 192 6-202 297-489 (492)
45 KOG4212 RNA-binding protein hn 99.7 3.4E-16 7.3E-21 134.0 17.6 184 5-188 43-282 (608)
46 KOG4207 Predicted splicing fac 99.7 9.3E-17 2E-21 124.6 11.5 77 123-203 12-92 (256)
47 KOG4211 Splicing factor hnRNP- 99.7 4.3E-16 9.3E-21 135.4 15.8 167 5-202 9-180 (510)
48 KOG0121 Nuclear cap-binding pr 99.7 2.9E-17 6.3E-22 117.8 7.1 80 4-83 34-116 (153)
49 PF00076 RRM_1: RNA recognitio 99.7 8.5E-17 1.8E-21 108.3 7.9 68 9-76 1-70 (70)
50 KOG0110 RNA-binding protein (R 99.7 8E-16 1.7E-20 139.0 14.8 192 4-202 383-596 (725)
51 PLN03120 nucleic acid binding 99.7 3E-16 6.5E-21 128.6 10.9 78 5-83 3-80 (260)
52 TIGR01659 sex-lethal sex-letha 99.7 2E-15 4.3E-20 131.9 14.8 79 5-83 192-275 (346)
53 TIGR01648 hnRNP-R-Q heterogene 99.7 9.4E-16 2E-20 140.8 13.3 135 5-152 232-369 (578)
54 KOG1548 Transcription elongati 99.7 8.8E-15 1.9E-19 122.0 16.9 191 4-204 132-352 (382)
55 PLN03121 nucleic acid binding 99.6 1.4E-15 3.1E-20 122.6 10.7 81 1-83 1-81 (243)
56 KOG0114 Predicted RNA-binding 99.6 1.5E-15 3.2E-20 105.0 9.0 82 2-83 14-95 (124)
57 KOG0122 Translation initiation 99.6 3.5E-15 7.7E-20 118.8 9.3 80 4-83 187-269 (270)
58 PF14259 RRM_6: RNA recognitio 99.6 5E-15 1.1E-19 99.7 7.8 68 9-76 1-70 (70)
59 PLN03134 glycine-rich RNA-bind 99.6 9.9E-14 2.1E-18 106.4 13.5 81 121-205 31-115 (144)
60 COG0724 RNA-binding proteins ( 99.6 1.1E-13 2.3E-18 118.3 14.8 145 6-162 115-263 (306)
61 KOG0124 Polypyrimidine tract-b 99.6 4.1E-13 8.9E-18 112.8 17.3 77 7-83 211-290 (544)
62 smart00362 RRM_2 RNA recogniti 99.5 4.8E-14 1.1E-18 94.7 9.3 71 8-78 1-72 (72)
63 PLN03213 repressor of silencin 99.5 2.8E-14 6E-19 124.1 9.8 77 4-81 8-86 (759)
64 KOG0126 Predicted RNA-binding 99.5 6.4E-16 1.4E-20 117.6 -0.2 80 4-83 33-115 (219)
65 KOG0125 Ataxin 2-binding prote 99.5 2E-14 4.4E-19 119.1 8.2 80 4-83 94-174 (376)
66 KOG0130 RNA-binding protein RB 99.5 1.4E-14 3E-19 105.0 6.4 79 5-83 71-152 (170)
67 KOG0120 Splicing factor U2AF, 99.5 3.8E-14 8.1E-19 126.4 9.7 182 5-202 288-490 (500)
68 KOG1190 Polypyrimidine tract-b 99.5 1.7E-12 3.6E-17 110.7 16.8 188 8-202 152-371 (492)
69 KOG0113 U1 small nuclear ribon 99.5 5.8E-13 1.3E-17 109.2 13.0 77 122-202 99-179 (335)
70 KOG0415 Predicted peptidyl pro 99.5 3.1E-14 6.8E-19 119.0 5.7 79 5-83 238-319 (479)
71 KOG0149 Predicted RNA-binding 99.5 6.3E-14 1.4E-18 111.3 7.2 75 7-82 13-90 (247)
72 cd00590 RRM RRM (RNA recogniti 99.5 7E-13 1.5E-17 89.5 9.8 72 8-79 1-74 (74)
73 KOG0111 Cyclophilin-type pepti 99.4 8.8E-14 1.9E-18 109.1 5.2 82 5-86 9-93 (298)
74 KOG4212 RNA-binding protein hn 99.4 8.1E-12 1.8E-16 107.4 17.5 75 122-201 534-608 (608)
75 KOG1456 Heterogeneous nuclear 99.4 2.2E-11 4.8E-16 102.9 19.7 192 4-202 118-361 (494)
76 PF13893 RRM_5: RNA recognitio 99.4 7.3E-13 1.6E-17 84.9 8.2 56 23-80 1-56 (56)
77 smart00360 RRM RNA recognition 99.4 6E-13 1.3E-17 89.0 8.2 68 11-78 1-71 (71)
78 PF00076 RRM_1: RNA recognitio 99.4 8E-13 1.7E-17 88.7 7.9 67 127-197 1-70 (70)
79 KOG1456 Heterogeneous nuclear 99.4 2.5E-11 5.5E-16 102.5 18.2 193 4-199 285-484 (494)
80 KOG0108 mRNA cleavage and poly 99.4 7E-13 1.5E-17 117.6 9.1 79 7-85 19-100 (435)
81 KOG0109 RNA-binding protein LA 99.4 4.3E-13 9.4E-18 109.5 6.4 94 4-102 76-169 (346)
82 KOG1365 RNA-binding protein Fu 99.4 4.8E-13 1E-17 113.0 5.6 189 5-202 160-360 (508)
83 KOG0117 Heterogeneous nuclear 99.4 8.7E-13 1.9E-17 113.6 7.2 77 6-87 259-335 (506)
84 KOG0130 RNA-binding protein RB 99.4 2E-12 4.3E-17 93.9 7.9 78 121-202 69-150 (170)
85 KOG0125 Ataxin 2-binding prote 99.4 2.4E-12 5.3E-17 106.9 8.5 77 122-202 94-172 (376)
86 PLN03120 nucleic acid binding 99.3 8.7E-12 1.9E-16 102.5 9.9 74 124-202 4-78 (260)
87 KOG0121 Nuclear cap-binding pr 99.3 5E-12 1.1E-16 91.1 6.9 77 122-202 34-114 (153)
88 KOG0105 Alternative splicing f 99.3 1.9E-11 4.1E-16 93.7 10.3 80 123-206 5-85 (241)
89 smart00361 RRM_1 RNA recogniti 99.3 1.4E-11 3.1E-16 82.6 7.8 58 20-77 2-69 (70)
90 KOG4454 RNA binding protein (R 99.3 2.9E-12 6.2E-17 100.7 4.9 140 4-188 7-151 (267)
91 KOG0129 Predicted RNA-binding 99.3 1.1E-10 2.4E-15 102.8 14.8 173 4-201 257-451 (520)
92 KOG0122 Translation initiation 99.3 3.3E-11 7.2E-16 96.4 10.0 81 119-203 184-268 (270)
93 PF14259 RRM_6: RNA recognitio 99.3 3.1E-11 6.8E-16 81.0 7.9 67 127-197 1-70 (70)
94 KOG0114 Predicted RNA-binding 99.2 5.8E-11 1.3E-15 82.4 8.9 79 120-202 14-93 (124)
95 PLN03121 nucleic acid binding 99.2 5.7E-11 1.2E-15 96.2 9.8 75 123-202 4-79 (243)
96 KOG0146 RNA-binding protein ET 99.2 1.2E-11 2.7E-16 99.9 5.6 80 4-83 283-365 (371)
97 KOG0120 Splicing factor U2AF, 99.2 7.6E-11 1.7E-15 105.5 10.5 179 4-202 173-367 (500)
98 PLN03213 repressor of silencin 99.2 6.2E-11 1.3E-15 103.6 9.5 76 123-202 9-86 (759)
99 KOG0132 RNA polymerase II C-te 99.2 6.1E-11 1.3E-15 108.7 9.0 76 5-83 420-495 (894)
100 KOG0112 Large RNA-binding prot 99.2 1.6E-11 3.5E-16 114.1 5.2 158 4-202 370-529 (975)
101 smart00362 RRM_2 RNA recogniti 99.2 2.4E-10 5.3E-15 76.4 8.9 69 126-198 1-71 (72)
102 KOG4211 Splicing factor hnRNP- 99.2 8E-10 1.7E-14 96.9 13.4 182 4-188 101-346 (510)
103 KOG0131 Splicing factor 3b, su 99.1 1.1E-10 2.3E-15 89.5 5.7 78 121-202 6-87 (203)
104 KOG0533 RRM motif-containing p 99.1 4.2E-09 9.1E-14 86.5 14.0 78 6-83 83-162 (243)
105 smart00360 RRM RNA recognition 99.1 9.5E-10 2.1E-14 73.1 8.4 66 129-198 1-70 (71)
106 KOG4208 Nucleolar RNA-binding 99.1 6.9E-10 1.5E-14 86.9 8.0 80 4-83 47-130 (214)
107 cd00590 RRM RRM (RNA recogniti 99.1 2E-09 4.4E-14 72.2 9.4 70 126-199 1-73 (74)
108 KOG0116 RasGAP SH3 binding pro 99.0 2.2E-09 4.8E-14 95.0 11.0 78 5-83 287-367 (419)
109 PF13893 RRM_5: RNA recognitio 99.0 1.2E-09 2.5E-14 69.9 6.6 56 141-201 1-56 (56)
110 KOG0149 Predicted RNA-binding 99.0 1.5E-09 3.2E-14 86.7 7.0 74 124-202 12-89 (247)
111 KOG0111 Cyclophilin-type pepti 99.0 5.1E-10 1.1E-14 88.2 4.2 79 123-205 9-91 (298)
112 KOG0153 Predicted RNA-binding 99.0 2.2E-09 4.7E-14 90.2 7.7 76 4-82 226-302 (377)
113 KOG4660 Protein Mei2, essentia 98.9 1.1E-09 2.4E-14 97.3 5.7 71 4-76 73-143 (549)
114 KOG4661 Hsp27-ERE-TATA-binding 98.9 2.3E-09 5E-14 95.4 7.3 80 5-84 404-486 (940)
115 KOG0126 Predicted RNA-binding 98.9 1.5E-10 3.1E-15 88.7 -0.2 75 124-202 35-113 (219)
116 KOG0108 mRNA cleavage and poly 98.9 4.5E-09 9.8E-14 93.6 7.8 82 125-210 19-104 (435)
117 PF04059 RRM_2: RNA recognitio 98.9 1.5E-08 3.3E-13 71.3 8.8 77 7-83 2-87 (97)
118 KOG0415 Predicted peptidyl pro 98.9 5.6E-09 1.2E-13 87.9 7.0 79 120-202 235-317 (479)
119 COG0724 RNA-binding proteins ( 98.8 1.6E-08 3.5E-13 86.1 9.5 75 124-202 115-193 (306)
120 KOG0128 RNA-binding protein SA 98.8 3.3E-10 7.1E-15 105.1 -2.1 132 5-188 666-803 (881)
121 KOG4210 Nuclear localization s 98.8 1.6E-08 3.4E-13 86.1 7.1 172 5-207 87-267 (285)
122 KOG0151 Predicted splicing reg 98.7 8.1E-08 1.8E-12 87.8 10.7 79 5-83 173-257 (877)
123 KOG2193 IGF-II mRNA-binding pr 98.7 2.8E-09 6.1E-14 91.7 1.3 140 7-188 2-145 (584)
124 smart00361 RRM_1 RNA recogniti 98.7 7.9E-08 1.7E-12 64.3 7.3 57 138-198 2-69 (70)
125 KOG4205 RNA-binding protein mu 98.7 2.3E-08 4.9E-13 85.5 5.4 80 6-86 97-179 (311)
126 KOG4661 Hsp27-ERE-TATA-binding 98.7 1.5E-07 3.2E-12 84.1 10.5 79 121-203 402-484 (940)
127 KOG4209 Splicing factor RNPS1, 98.6 5.9E-08 1.3E-12 79.9 5.4 79 4-83 99-180 (231)
128 PF11608 Limkain-b1: Limkain b 98.6 3.8E-07 8.2E-12 61.3 7.5 70 7-83 3-77 (90)
129 KOG4206 Spliceosomal protein s 98.6 3.8E-07 8.2E-12 72.9 8.4 76 124-203 9-89 (221)
130 KOG0132 RNA polymerase II C-te 98.5 2.4E-07 5.1E-12 85.7 7.5 81 122-208 419-499 (894)
131 KOG4307 RNA binding protein RB 98.5 7.8E-07 1.7E-11 81.4 10.5 190 5-200 310-510 (944)
132 KOG1365 RNA-binding protein Fu 98.5 2.5E-06 5.4E-11 73.0 12.2 158 4-181 58-225 (508)
133 KOG0226 RNA-binding proteins [ 98.4 2.8E-07 6.2E-12 74.6 4.7 159 10-201 100-267 (290)
134 KOG0226 RNA-binding proteins [ 98.4 3.7E-07 8.1E-12 73.9 4.6 76 5-80 189-267 (290)
135 KOG1457 RNA binding protein (c 98.4 2E-06 4.3E-11 68.5 8.5 85 123-208 33-122 (284)
136 KOG0153 Predicted RNA-binding 98.4 1.4E-06 3.1E-11 73.6 7.5 76 122-203 226-302 (377)
137 KOG0106 Alternative splicing f 98.3 6.2E-07 1.3E-11 72.2 3.9 70 125-202 2-71 (216)
138 PF08777 RRM_3: RNA binding mo 98.3 2E-06 4.4E-11 62.1 6.1 71 7-80 2-77 (105)
139 KOG0533 RRM motif-containing p 98.2 4.5E-06 9.8E-11 68.8 7.8 75 124-202 83-160 (243)
140 KOG4676 Splicing factor, argin 98.2 2.7E-06 5.9E-11 73.0 6.5 62 126-187 9-77 (479)
141 KOG1548 Transcription elongati 98.2 1E-05 2.2E-10 68.5 8.5 77 122-202 132-219 (382)
142 KOG4454 RNA binding protein (R 98.1 1.8E-06 4E-11 68.5 3.0 66 123-188 8-75 (267)
143 PF04059 RRM_2: RNA recognitio 98.1 3.2E-05 7E-10 54.6 9.0 77 125-201 2-84 (97)
144 KOG4208 Nucleolar RNA-binding 98.1 1.2E-05 2.6E-10 63.5 7.4 74 122-199 47-125 (214)
145 KOG1995 Conserved Zn-finger pr 98.1 4.4E-06 9.5E-11 71.2 4.8 81 4-84 64-155 (351)
146 PF11608 Limkain-b1: Limkain b 98.1 3.4E-05 7.3E-10 52.0 7.8 69 125-203 3-76 (90)
147 KOG0151 Predicted splicing reg 98.1 1E-05 2.3E-10 74.4 7.2 78 121-202 171-255 (877)
148 KOG0116 RasGAP SH3 binding pro 98.0 6.8E-05 1.5E-09 66.9 11.7 75 124-203 288-366 (419)
149 PF14605 Nup35_RRM_2: Nup53/35 98.0 1.7E-05 3.8E-10 49.5 5.6 53 6-62 1-53 (53)
150 KOG2202 U2 snRNP splicing fact 98.0 2.9E-06 6.2E-11 69.1 2.4 63 21-83 83-148 (260)
151 KOG4209 Splicing factor RNPS1, 98.0 5.2E-05 1.1E-09 62.6 9.1 76 122-202 99-178 (231)
152 PF08777 RRM_3: RNA binding mo 98.0 1.8E-05 3.9E-10 57.1 5.3 59 125-185 2-60 (105)
153 KOG4660 Protein Mei2, essentia 98.0 1.2E-05 2.5E-10 72.3 5.2 71 122-197 73-143 (549)
154 COG5175 MOT2 Transcriptional r 97.9 2.6E-05 5.7E-10 65.8 6.8 75 7-81 115-201 (480)
155 PF05172 Nup35_RRM: Nup53/35/4 97.9 6.5E-05 1.4E-09 53.4 7.7 76 4-81 4-90 (100)
156 KOG4210 Nuclear localization s 97.9 2E-05 4.2E-10 67.3 4.9 81 2-83 180-264 (285)
157 KOG2416 Acinus (induces apopto 97.8 2.6E-05 5.6E-10 70.5 4.9 77 4-83 442-522 (718)
158 KOG2314 Translation initiation 97.8 6.8E-05 1.5E-09 67.5 6.9 75 5-79 57-140 (698)
159 KOG4307 RNA binding protein RB 97.7 0.00011 2.4E-09 67.7 7.9 76 4-79 864-943 (944)
160 KOG3152 TBP-binding protein, a 97.7 4E-05 8.6E-10 62.4 4.2 70 5-74 73-157 (278)
161 KOG1855 Predicted RNA-binding 97.7 0.00013 2.8E-09 63.7 7.0 73 5-77 230-318 (484)
162 KOG0115 RNA-binding protein p5 97.6 0.0002 4.4E-09 58.5 7.0 103 57-201 6-111 (275)
163 KOG0128 RNA-binding protein SA 97.6 0.00011 2.4E-09 69.3 6.3 77 6-82 736-814 (881)
164 KOG0129 Predicted RNA-binding 97.5 0.00026 5.7E-09 63.3 7.1 61 4-64 368-432 (520)
165 PF08952 DUF1866: Domain of un 97.4 0.00078 1.7E-08 50.9 7.3 56 22-83 52-107 (146)
166 KOG1996 mRNA splicing factor [ 97.4 0.00059 1.3E-08 56.8 7.0 62 20-81 300-365 (378)
167 KOG2202 U2 snRNP splicing fact 97.4 0.00055 1.2E-08 56.1 6.6 59 139-201 83-145 (260)
168 KOG1995 Conserved Zn-finger pr 97.4 0.00086 1.9E-08 57.5 7.8 78 121-202 63-152 (351)
169 KOG4849 mRNA cleavage factor I 97.3 0.00028 6.2E-09 60.0 3.7 76 5-80 79-159 (498)
170 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.0011 2.4E-08 41.4 5.2 52 125-179 2-53 (53)
171 PF08675 RNA_bind: RNA binding 97.2 0.0023 5.1E-08 43.2 6.7 55 6-66 9-63 (87)
172 KOG0112 Large RNA-binding prot 97.1 0.00083 1.8E-08 63.9 5.5 78 3-83 452-531 (975)
173 COG5175 MOT2 Transcriptional r 97.0 0.0021 4.6E-08 54.6 6.8 76 123-202 113-201 (480)
174 KOG1855 Predicted RNA-binding 96.9 0.0014 3.1E-08 57.4 4.7 69 119-187 226-311 (484)
175 PF15023 DUF4523: Protein of u 96.8 0.0077 1.7E-07 45.0 7.4 73 5-82 85-161 (166)
176 KOG2314 Translation initiation 96.7 0.0044 9.5E-08 56.3 6.7 65 124-188 58-131 (698)
177 KOG3152 TBP-binding protein, a 96.7 0.001 2.2E-08 54.4 2.4 64 125-188 75-154 (278)
178 PF07576 BRAP2: BRCA1-associat 96.7 0.017 3.7E-07 41.9 8.4 67 6-72 13-81 (110)
179 PF03467 Smg4_UPF3: Smg-4/UPF3 96.6 0.0027 5.9E-08 50.4 3.8 80 4-83 5-98 (176)
180 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0093 2E-07 42.4 5.9 63 124-188 6-79 (100)
181 KOG0115 RNA-binding protein p5 96.5 0.0032 7E-08 51.6 4.0 75 7-81 32-112 (275)
182 KOG0804 Cytoplasmic Zn-finger 96.5 0.028 6.1E-07 49.9 9.8 68 5-72 73-142 (493)
183 PF03880 DbpA: DbpA RNA bindin 96.3 0.035 7.5E-07 37.3 7.7 66 8-80 2-74 (74)
184 KOG4285 Mitotic phosphoprotein 96.3 0.018 3.9E-07 48.4 7.2 73 6-83 197-270 (350)
185 PF10309 DUF2414: Protein of u 96.2 0.041 8.9E-07 35.3 7.0 53 7-65 6-62 (62)
186 KOG0835 Cyclin L [General func 96.2 0.008 1.7E-07 51.2 4.8 20 44-63 172-191 (367)
187 KOG2253 U1 snRNP complex, subu 96.1 0.00081 1.8E-08 62.0 -1.7 72 4-81 38-109 (668)
188 KOG1996 mRNA splicing factor [ 96.0 0.024 5.1E-07 47.5 6.7 59 139-201 301-364 (378)
189 KOG2068 MOT2 transcription fac 95.9 0.0035 7.5E-08 53.5 1.3 77 7-83 78-163 (327)
190 PF04847 Calcipressin: Calcipr 95.8 0.037 8.1E-07 44.1 6.8 62 19-83 8-71 (184)
191 KOG2591 c-Mpl binding protein, 95.7 0.017 3.7E-07 52.5 5.0 70 4-77 173-246 (684)
192 KOG2193 IGF-II mRNA-binding pr 95.7 0.0015 3.2E-08 57.2 -1.6 78 6-83 80-157 (584)
193 KOG2135 Proteins containing th 95.7 0.0072 1.6E-07 53.8 2.4 76 4-83 370-446 (526)
194 PF08952 DUF1866: Domain of un 95.7 0.059 1.3E-06 40.9 6.9 53 140-201 52-104 (146)
195 PF06495 Transformer: Fruit fl 95.3 0.025 5.4E-07 43.6 4.0 10 258-267 101-110 (182)
196 PF10309 DUF2414: Protein of u 95.2 0.17 3.7E-06 32.4 6.9 54 125-182 6-62 (62)
197 KOG0835 Cyclin L [General func 95.2 0.035 7.5E-07 47.4 4.7 13 135-147 212-224 (367)
198 PF08675 RNA_bind: RNA binding 95.0 0.13 2.8E-06 35.0 6.1 55 126-184 10-64 (87)
199 KOG2591 c-Mpl binding protein, 94.7 0.14 3.1E-06 46.7 7.7 56 124-182 175-232 (684)
200 PF11767 SET_assoc: Histone ly 94.4 0.18 3.9E-06 32.9 5.6 55 17-77 11-65 (66)
201 PF07576 BRAP2: BRCA1-associat 93.5 0.97 2.1E-05 32.8 8.7 63 126-188 15-80 (110)
202 KOG4574 RNA-binding protein (c 93.5 0.073 1.6E-06 51.0 3.5 74 11-87 303-378 (1007)
203 KOG2318 Uncharacterized conser 93.3 0.4 8.6E-06 44.2 7.7 79 3-81 171-306 (650)
204 PF07292 NID: Nmi/IFP 35 domai 93.2 0.18 4E-06 34.8 4.3 81 48-162 1-83 (88)
205 KOG2416 Acinus (induces apopto 92.7 0.12 2.7E-06 47.5 3.6 79 121-202 441-520 (718)
206 KOG2135 Proteins containing th 92.1 0.47 1E-05 42.7 6.4 72 125-203 373-445 (526)
207 PF03467 Smg4_UPF3: Smg-4/UPF3 92.1 0.2 4.3E-06 39.8 3.8 66 123-188 6-81 (176)
208 KOG2253 U1 snRNP complex, subu 91.9 0.36 7.7E-06 45.2 5.6 71 113-188 29-99 (668)
209 KOG0804 Cytoplasmic Zn-finger 90.7 1.2 2.6E-05 39.9 7.4 65 124-188 74-141 (493)
210 PF15023 DUF4523: Protein of u 90.2 0.65 1.4E-05 35.0 4.6 62 122-186 84-149 (166)
211 PF04847 Calcipressin: Calcipr 89.6 1.4 3.1E-05 35.1 6.5 60 137-202 8-69 (184)
212 KOG4285 Mitotic phosphoprotein 89.1 1.4 3E-05 37.5 6.2 69 125-200 198-266 (350)
213 KOG4849 mRNA cleavage factor I 88.7 0.77 1.7E-05 39.7 4.6 66 123-188 79-150 (498)
214 KOG1847 mRNA splicing factor [ 88.3 0.21 4.6E-06 46.5 1.1 18 260-277 780-797 (878)
215 KOG4574 RNA-binding protein (c 87.7 0.4 8.6E-06 46.2 2.5 72 127-202 301-372 (1007)
216 PRK14548 50S ribosomal protein 87.0 3.2 7E-05 28.5 6.0 58 8-65 22-81 (84)
217 KOG4019 Calcineurin-mediated s 85.2 1.1 2.3E-05 35.2 3.3 76 5-83 9-90 (193)
218 PF14111 DUF4283: Domain of un 84.8 1.4 3E-05 33.8 3.9 120 9-160 18-141 (153)
219 KOG2068 MOT2 transcription fac 84.3 0.46 9.9E-06 40.9 1.0 64 125-188 78-151 (327)
220 TIGR03636 L23_arch archaeal ri 84.3 5.9 0.00013 26.7 6.2 58 8-65 15-74 (77)
221 PF03468 XS: XS domain; Inter 83.7 1.2 2.7E-05 32.6 2.9 56 8-63 10-75 (116)
222 PF11767 SET_assoc: Histone ly 83.6 4.6 0.0001 26.3 5.3 50 134-188 10-59 (66)
223 KOG4410 5-formyltetrahydrofola 82.9 3 6.6E-05 35.2 5.2 48 6-55 330-377 (396)
224 KOG4246 Predicted DNA-binding 82.2 0.55 1.2E-05 45.2 0.7 6 47-52 61-66 (1194)
225 KOG2891 Surface glycoprotein [ 81.4 1.5 3.3E-05 36.8 3.0 67 4-70 147-247 (445)
226 PF10567 Nab6_mRNP_bdg: RNA-re 80.5 4 8.7E-05 34.7 5.1 169 6-184 15-213 (309)
227 KOG3580 Tight junction protein 78.2 17 0.00037 34.3 8.8 40 121-160 58-98 (1027)
228 KOG1295 Nonsense-mediated deca 75.5 3.3 7.1E-05 36.5 3.4 66 5-70 6-77 (376)
229 PF03880 DbpA: DbpA RNA bindin 70.4 28 0.00061 23.0 6.4 59 134-201 11-74 (74)
230 PTZ00191 60S ribosomal protein 70.3 20 0.00043 27.4 6.1 56 8-63 83-140 (145)
231 PF15513 DUF4651: Domain of un 69.6 12 0.00027 23.9 4.1 18 21-38 9-26 (62)
232 PRK14548 50S ribosomal protein 69.6 33 0.00072 23.5 6.7 57 126-182 22-81 (84)
233 KOG4483 Uncharacterized conser 68.4 13 0.00028 33.2 5.3 57 4-63 389-445 (528)
234 KOG2295 C2H2 Zn-finger protein 66.4 0.84 1.8E-05 42.0 -2.2 70 5-74 230-302 (648)
235 COG5638 Uncharacterized conser 65.8 27 0.00059 31.2 6.9 79 3-81 143-296 (622)
236 TIGR03636 L23_arch archaeal ri 65.3 39 0.00085 22.7 6.5 57 126-182 15-74 (77)
237 KOG2146 Splicing coactivator S 65.1 13 0.00027 31.6 4.5 11 68-78 76-86 (354)
238 PF14893 PNMA: PNMA 64.5 9 0.00019 33.7 3.8 53 3-55 15-72 (331)
239 cd04908 ACT_Bt0572_1 N-termina 64.4 34 0.00074 21.7 6.9 45 19-64 14-59 (66)
240 CHL00123 rps6 ribosomal protei 60.4 56 0.0012 23.0 6.6 55 8-64 10-81 (97)
241 PF09707 Cas_Cas2CT1978: CRISP 59.6 29 0.00062 23.9 4.8 49 4-52 23-71 (86)
242 PF02829 3H: 3H domain; Inter 55.2 55 0.0012 23.2 5.8 51 16-66 7-57 (98)
243 KOG2318 Uncharacterized conser 53.1 90 0.0019 29.5 8.1 68 122-189 172-295 (650)
244 smart00596 PRE_C2HC PRE_C2HC d 52.4 31 0.00066 22.7 3.7 58 21-81 2-63 (69)
245 cd04889 ACT_PDH-BS-like C-term 52.2 51 0.0011 19.9 6.3 42 21-62 13-55 (56)
246 KOG4008 rRNA processing protei 52.2 13 0.00027 30.7 2.4 35 4-38 38-72 (261)
247 COG0150 PurM Phosphoribosylami 52.1 4.6 9.9E-05 35.3 -0.1 49 19-68 274-322 (345)
248 KOG4213 RNA-binding protein La 50.3 23 0.0005 27.9 3.5 46 18-63 118-168 (205)
249 KOG4483 Uncharacterized conser 49.4 43 0.00093 30.0 5.3 55 124-181 391-446 (528)
250 PF07530 PRE_C2HC: Associated 47.8 52 0.0011 21.5 4.4 59 21-82 2-64 (68)
251 KOG4410 5-formyltetrahydrofola 47.4 58 0.0012 27.8 5.6 49 124-173 330-378 (396)
252 PF02714 DUF221: Domain of unk 46.6 44 0.00095 29.1 5.2 34 48-83 1-34 (325)
253 PRK11634 ATP-dependent RNA hel 45.7 1E+02 0.0022 29.9 7.9 67 8-81 488-561 (629)
254 PF11411 DNA_ligase_IV: DNA li 45.7 17 0.00037 20.5 1.5 17 16-32 19-35 (36)
255 PRK05738 rplW 50S ribosomal pr 45.4 86 0.0019 21.9 5.5 32 8-39 21-54 (92)
256 KOG2812 Uncharacterized conser 43.7 31 0.00066 30.3 3.5 11 257-267 88-98 (426)
257 PF00403 HMA: Heavy-metal-asso 43.6 79 0.0017 19.6 6.9 54 8-64 1-58 (62)
258 PRK11558 putative ssRNA endonu 42.7 57 0.0012 23.0 4.2 52 4-55 25-76 (97)
259 PF01071 GARS_A: Phosphoribosy 41.7 98 0.0021 25.0 6.0 60 18-78 24-86 (194)
260 PTZ00191 60S ribosomal protein 38.7 1.7E+02 0.0037 22.4 6.5 57 125-181 82-141 (145)
261 KOG4365 Uncharacterized conser 38.2 5.5 0.00012 35.8 -1.7 76 6-82 3-81 (572)
262 COG0018 ArgS Arginyl-tRNA synt 38.1 2.6E+02 0.0057 26.9 9.1 98 20-160 60-166 (577)
263 KOG1295 Nonsense-mediated deca 36.8 37 0.00081 30.2 3.1 64 125-188 8-78 (376)
264 PF12091 DUF3567: Protein of u 35.2 55 0.0012 22.4 3.0 18 133-150 59-76 (85)
265 TIGR01873 cas_CT1978 CRISPR-as 34.4 94 0.002 21.5 4.1 51 4-54 23-74 (87)
266 KOG2146 Splicing coactivator S 34.1 90 0.0019 26.7 4.7 13 257-269 219-231 (354)
267 PF11823 DUF3343: Protein of u 33.7 60 0.0013 21.3 3.1 25 46-70 2-26 (73)
268 PF09902 DUF2129: Uncharacteri 33.5 1.2E+02 0.0025 20.1 4.3 40 25-70 15-54 (71)
269 PRK09631 DNA topoisomerase IV 33.2 3.7E+02 0.008 26.2 9.3 59 6-65 220-282 (635)
270 PF03439 Spt5-NGN: Early trans 32.8 83 0.0018 21.4 3.8 35 32-68 33-67 (84)
271 PF00276 Ribosomal_L23: Riboso 32.0 1.5E+02 0.0033 20.5 5.0 49 8-56 21-84 (91)
272 PF10567 Nab6_mRNP_bdg: RNA-re 31.9 1E+02 0.0022 26.5 4.8 54 124-177 15-79 (309)
273 PF04648 MF_alpha: Yeast matin 31.6 19 0.00041 15.2 0.2 6 269-274 1-6 (13)
274 COG0030 KsgA Dimethyladenosine 30.3 75 0.0016 27.0 3.8 32 7-38 96-127 (259)
275 PF14111 DUF4283: Domain of un 30.2 35 0.00077 25.8 1.8 34 8-41 106-140 (153)
276 KOG0156 Cytochrome P450 CYP2 s 29.3 1.3E+02 0.0028 28.2 5.6 59 10-75 36-97 (489)
277 PRK10629 EnvZ/OmpR regulon mod 29.2 2.4E+02 0.0053 21.0 8.3 72 5-81 34-109 (127)
278 PF08544 GHMP_kinases_C: GHMP 27.8 1.8E+02 0.004 19.1 6.5 43 21-65 37-79 (85)
279 CHL00030 rpl23 ribosomal prote 27.7 2.2E+02 0.0047 19.9 5.6 32 8-39 20-53 (93)
280 PF15407 Spo7_2_N: Sporulation 27.5 24 0.00051 23.1 0.3 25 4-28 25-49 (67)
281 KOG3869 Uncharacterized conser 27.5 19 0.00042 32.2 -0.1 10 275-284 328-337 (450)
282 PRK02886 hypothetical protein; 27.4 2.1E+02 0.0046 19.7 5.1 54 4-70 5-58 (87)
283 PF08442 ATP-grasp_2: ATP-gras 27.3 1.3E+02 0.0029 24.4 4.7 54 18-71 25-81 (202)
284 PF08156 NOP5NT: NOP5NT (NUC12 27.1 19 0.00042 23.4 -0.1 39 21-66 27-65 (67)
285 PF12829 Mhr1: Transcriptional 26.4 1.4E+02 0.0029 20.9 3.9 52 13-65 19-71 (91)
286 cd04909 ACT_PDH-BS C-terminal 25.9 1.8E+02 0.0038 18.3 6.1 47 19-65 14-62 (69)
287 PF00398 RrnaAD: Ribosomal RNA 25.1 80 0.0017 26.7 3.2 28 6-33 97-126 (262)
288 PRK12758 DNA topoisomerase IV 24.6 5.2E+02 0.011 26.2 8.8 59 6-65 241-303 (869)
289 PRK08559 nusG transcription an 24.3 3.2E+02 0.0069 20.9 6.1 33 33-67 36-68 (153)
290 COG5193 LHP1 La protein, small 24.2 35 0.00075 30.6 0.8 60 5-64 173-245 (438)
291 PRK11230 glycolate oxidase sub 24.0 2.3E+02 0.0049 26.7 6.2 47 20-66 203-255 (499)
292 PRK09630 DNA topoisomerase IV 23.8 4.5E+02 0.0097 24.5 7.7 59 6-65 220-282 (479)
293 cd00027 BRCT Breast Cancer Sup 23.2 1.3E+02 0.0028 18.3 3.4 26 7-32 2-27 (72)
294 PF02714 DUF221: Domain of unk 23.1 1E+02 0.0022 26.9 3.6 22 165-186 1-22 (325)
295 KOG4019 Calcineurin-mediated s 22.7 72 0.0016 25.3 2.2 71 126-202 12-88 (193)
296 PRK02302 hypothetical protein; 22.3 2.3E+02 0.0051 19.6 4.4 40 25-70 21-60 (89)
297 PF06014 DUF910: Bacterial pro 21.9 61 0.0013 20.8 1.4 16 21-36 5-20 (62)
298 PF05189 RTC_insert: RNA 3'-te 21.7 2.4E+02 0.0053 19.8 4.7 46 8-53 12-65 (103)
299 KOG2295 C2H2 Zn-finger protein 21.5 23 0.00051 33.0 -0.8 66 123-188 230-299 (648)
300 PHA01632 hypothetical protein 21.0 1.1E+02 0.0023 19.1 2.2 21 9-29 19-39 (64)
301 COG2608 CopZ Copper chaperone 21.0 2.5E+02 0.0054 18.2 6.0 46 6-54 3-48 (71)
302 PF15063 TC1: Thyroid cancer p 20.4 71 0.0015 21.3 1.5 24 10-33 29-52 (79)
303 cd04882 ACT_Bt0572_2 C-termina 20.3 2.2E+02 0.0048 17.3 5.7 43 21-63 14-58 (65)
304 PF08734 GYD: GYD domain; Int 20.2 3E+02 0.0066 18.9 6.0 45 138-182 22-67 (91)
No 1
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.9e-31 Score=199.47 Aligned_cols=193 Identities=67% Similarity=1.115 Sum_probs=162.5
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
|+++.+++|||+|||.++.+.+|++||-+||.|.+|.|+....+..||||+|+++.+|+.||..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 89999999999999999999999999999999999999887777899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
.... ....+.+.+.+.+.+ +.+.+....++...+...|.|.+||.+.++++|++++.+.|+|.+..+.++.
T Consensus 81 rggr----~s~~~~G~y~gggrg-----Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg 151 (241)
T KOG0105|consen 81 RGGR----SSSDRRGSYSGGGRG-----GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG 151 (241)
T ss_pred cCCC----cccccccccCCCCCC-----CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc
Confidence 8762 112222222222222 2222333446777888999999999999999999999999999999999885
Q ss_pred CCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCCC
Q 022688 161 EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (293)
Q Consensus 161 ~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~ 205 (293)
++.|+|...++...|+.+|+...+........|++.......
T Consensus 152 ---~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~~ 193 (241)
T KOG0105|consen 152 ---VGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENRD 193 (241)
T ss_pred ---ceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecccCCCc
Confidence 899999999999999999999999876666777777765443
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=2.6e-31 Score=231.27 Aligned_cols=163 Identities=23% Similarity=0.334 Sum_probs=142.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
...++|||+|||+++|+++|+++|+.||+|++|+|.. ++.+++||||+|.++++|++|++.||+..|.+++|.|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 3578999999999999999999999999999999954 4678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
.... ......+|||.|||..+++++|+++|++||.|..+.++.+.
T Consensus 185 ~p~~-----------------------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 185 RPGG-----------------------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred cccc-----------------------------------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 6431 01123589999999999999999999999999999999886
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 161 ~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
.+ ++|||+|++.++|++|++.||+..+.. .+..|.|..++.
T Consensus 230 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g--~~~~l~V~~a~~ 274 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEAQEAISALNNVIPEG--GSQPLTVRLAEE 274 (346)
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCccCC--CceeEEEEECCc
Confidence 43 699999999999999999999998861 146788887764
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.9e-29 Score=229.44 Aligned_cols=174 Identities=20% Similarity=0.336 Sum_probs=146.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
...++|||+|||+++++++|+++|.+||+|.+|.|.. +++++|||||+|.+.++|+.|++.|||..|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3568999999999999999999999999999999954 4789999999999999999999999999999999999854
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
.......+.. ...........+|||+||+..+++++|+++|+.||.|..+.+..+.
T Consensus 185 ~~~p~a~~~~------------------------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~ 240 (612)
T TIGR01645 185 SNMPQAQPII------------------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP 240 (612)
T ss_pred cccccccccc------------------------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Confidence 4321100000 0001111234689999999999999999999999999999999876
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCCC
Q 022688 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (293)
Q Consensus 161 ~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~ 205 (293)
.+ |||||+|.+.++|.+|+..||+..++ |+.|+|..+..++
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI~amNg~elg----Gr~LrV~kAi~pP 285 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCVTPP 285 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC----CeEEEEEecCCCc
Confidence 43 69999999999999999999999999 9999999887544
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.1e-28 Score=218.92 Aligned_cols=163 Identities=22% Similarity=0.348 Sum_probs=142.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
++.++|||+|||+++|+++|+++|+.||+|.+|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3678999999999999999999999999999999965 4678999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
..... .....+|||+|||..+++++|+++|..||.|..+.++.+.
T Consensus 81 ~~~~~-----------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 125 (352)
T TIGR01661 81 RPSSD-----------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDN 125 (352)
T ss_pred ccccc-----------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecC
Confidence 65411 1123589999999999999999999999999999998765
Q ss_pred C----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 161 E----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 161 ~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
. .|||||+|++.++|..|+..|||..+.+ ....|.+..+..
T Consensus 126 ~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g--~~~~i~v~~a~~ 170 (352)
T TIGR01661 126 VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG--CTEPITVKFANN 170 (352)
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC--CceeEEEEECCC
Confidence 3 3699999999999999999999998872 135677777653
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=2.6e-27 Score=210.05 Aligned_cols=196 Identities=21% Similarity=0.284 Sum_probs=145.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCC--ceEEEEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~ 79 (293)
..++|||+|||+.+++++|.++|..||.|..+.+..+ +.++|||||+|.+.++|+.|++.|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4678999999999999999999999999999998653 5689999999999999999999999999977 6788888
Q ss_pred cCCCCCCCCCCC-----------CCCCCCC--CCCCCCCC------------C---------------------CCCCCC
Q 022688 80 AHGGSGRGPSSS-----------DRRGGYG--GGGAGGAG------------G---------------------AGAGAG 113 (293)
Q Consensus 80 ~~~~~~~~~~~~-----------~~~~~~~--~~~~~~~~------------~---------------------~~~~~~ 113 (293)
+........... ....... ....+... + ......
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 865431111000 0000000 00000000 0 000000
Q ss_pred -----------CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHH
Q 022688 114 -----------AGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYA 178 (293)
Q Consensus 114 -----------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a 178 (293)
..........+.+|||+|||..+++++|.++|++||.|..++++.+..+ |||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0000011223457999999999999999999999999999999988633 7999999999999999
Q ss_pred HHhcCCccCCCcCCCceeEeecCCCC
Q 022688 179 IRKLDDTEFRNPWARGRITVKRYDRS 204 (293)
Q Consensus 179 ~~~l~g~~~~~~~~g~~i~v~~~~~~ 204 (293)
+..|||..+. |+.|+|.+....
T Consensus 328 i~~lnG~~~~----gr~i~V~~~~~~ 349 (352)
T TIGR01661 328 ILSLNGYTLG----NRVLQVSFKTNK 349 (352)
T ss_pred HHHhCCCEEC----CeEEEEEEccCC
Confidence 9999999999 999999987654
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=7.1e-28 Score=220.76 Aligned_cols=171 Identities=21% Similarity=0.309 Sum_probs=145.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
++.++|||+|||..+++++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+||. |+|..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 5688999999999999999999999999999999965 46789999999999999999998 9999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
.............. ........+|||+|||..+++++|.++|++||.|..+.++.+.
T Consensus 166 ~~~~~~~~~~~~~~-----------------------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~ 222 (457)
T TIGR01622 166 QAEKNRAAKAATHQ-----------------------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP 222 (457)
T ss_pred chhhhhhhhccccc-----------------------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 54321111100000 0001125799999999999999999999999999999999886
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 161 ~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
.+ |||||+|.+.++|..|+..|+|..+. |+.|.|.++.
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~----g~~i~v~~a~ 264 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVMNGFELA----GRPIKVGYAQ 264 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCcEEC----CEEEEEEEcc
Confidence 55 69999999999999999999999998 9999999976
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=9.8e-28 Score=192.28 Aligned_cols=171 Identities=20% Similarity=0.286 Sum_probs=146.7
Q ss_pred eEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCC
Q 022688 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~ 84 (293)
-|||+.|.++++.++|++.|.+||+|.+++|+. +++++||+||.|.+.++|+.||..|||.+|+++.|+-.|+.-++
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 589999999999999999999999999999965 57899999999999999999999999999999999999998663
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcE
Q 022688 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY 164 (293)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~ 164 (293)
...... ....+.-+......+++|||+|++.-+++++|++.|++||+|..|.+.++. ||
T Consensus 144 ~e~n~~-------------------~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GY 202 (321)
T KOG0148|consen 144 SEMNGK-------------------PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GY 202 (321)
T ss_pred cccCCC-------------------CccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ce
Confidence 100000 001111123344567899999999999999999999999999999999987 89
Q ss_pred EEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 165 ~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
+||.|++.|.|.+||..||++++. |..+++.+-+.
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~----G~~VkCsWGKe 237 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIG----GQLVRCSWGKE 237 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeC----ceEEEEecccc
Confidence 999999999999999999999999 88888877653
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=9.3e-27 Score=213.46 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=139.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhh--CCCccCCceEEEEEcCC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR--DGYNFDGCRLRVELAHG 82 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~i~g~~l~v~~~~~ 82 (293)
|+++|||+|||+++|+++|.++|++||+|..|.|.. .+++|||+|.+.++|+.|++.| ++..|.|++|.|.++..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 689999999999999999999999999999999874 3789999999999999999864 78999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC
Q 022688 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~ 162 (293)
........ ... . ........+|+|.||+..+++++|.++|+.||.|..+.+..+...
T Consensus 78 ~~~~~~~~----~~~----------------~---~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~ 134 (481)
T TIGR01649 78 QEIKRDGN----SDF----------------D---SAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNV 134 (481)
T ss_pred cccccCCC----Ccc----------------c---CCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCc
Confidence 42111100 000 0 000112347999999999999999999999999999999887766
Q ss_pred cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 163 g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
++|||+|.+.++|.+|+..|||..+.+. ...|+|.+++
T Consensus 135 ~~afVef~~~~~A~~A~~~Lng~~i~~~--~~~l~v~~sk 172 (481)
T TIGR01649 135 FQALVEFESVNSAQHAKAALNGADIYNG--CCTLKIEYAK 172 (481)
T ss_pred eEEEEEECCHHHHHHHHHHhcCCcccCC--ceEEEEEEec
Confidence 7999999999999999999999999721 3467777765
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=3.7e-26 Score=209.48 Aligned_cols=193 Identities=17% Similarity=0.202 Sum_probs=142.0
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
.++++|||+|||+ .+|+++|+++|+.||.|..|+|+.+ .+|+|||+|.+.++|..|+..|||..|.|+.|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4678999999998 6999999999999999999999765 369999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCC--eEEE
Q 022688 83 GSGRGPSSSDRR------GGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFA 154 (293)
Q Consensus 83 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--i~~~ 154 (293)
.....+...... ..+.... ..... ............++.+|||.|||..+++++|+++|+.||. +..+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~---~~r~~-~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~i 426 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSR---NHRFK-KPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKF 426 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCc---cccCC-CcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEE
Confidence 422111110000 0010000 00000 0000111112346789999999999999999999999997 7778
Q ss_pred EEeeCCC--CcEEEEEeCChhhHHHHHHhcCCccCCCcCCC--ceeEeecCC
Q 022688 155 EVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR--GRITVKRYD 202 (293)
Q Consensus 155 ~~~~~~~--~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g--~~i~v~~~~ 202 (293)
++..... .++|||+|.+.++|.+|+..||+..+.+.... -.|+|.+++
T Consensus 427 k~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 427 KFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred EEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence 7765432 36999999999999999999999999821111 137776664
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1.1e-25 Score=205.81 Aligned_cols=191 Identities=20% Similarity=0.270 Sum_probs=139.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccC-CceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~~~~ 81 (293)
..++|||+|||+++++++|.++|++||.|.+|+|+.+ +.++|||||+|.+.++|++||+.||+..|. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 3589999999999999999999999999999999764 688999999999999999999999998885 7777776553
Q ss_pred CCCC-------CCCCC-------------------CCCCCCCCCCCCCC-----------------CCCC----CC----
Q 022688 82 GGSG-------RGPSS-------------------SDRRGGYGGGGAGG-----------------AGGA----GA---- 110 (293)
Q Consensus 82 ~~~~-------~~~~~-------------------~~~~~~~~~~~~~~-----------------~~~~----~~---- 110 (293)
.... ..... ...........+.+ ..+. +.
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 2110 00000 00000000000000 0000 00
Q ss_pred ---CCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhc--CCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCc
Q 022688 111 ---GAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (293)
Q Consensus 111 ---~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~ 185 (293)
...............+|||+||+..+++++|+++|+.| |.|..|.+++ +||||+|++.++|.+|++.||+.
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r----gfAFVeF~s~e~A~kAi~~lnG~ 292 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR----DYAFVHFEDREDAVKAMDELNGK 292 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec----CeEEEEeCCHHHHHHHHHHhCCC
Confidence 00000001112235689999999999999999999999 9999998875 49999999999999999999999
Q ss_pred cCCCcCCCceeEeecCCC
Q 022688 186 EFRNPWARGRITVKRYDR 203 (293)
Q Consensus 186 ~~~~~~~g~~i~v~~~~~ 203 (293)
++. |+.|.|.+++.
T Consensus 293 ~i~----Gr~I~V~~Akp 306 (578)
T TIGR01648 293 ELE----GSEIEVTLAKP 306 (578)
T ss_pred EEC----CEEEEEEEccC
Confidence 999 99999998864
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=2.2e-26 Score=215.76 Aligned_cols=158 Identities=27% Similarity=0.452 Sum_probs=138.8
Q ss_pred eEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCC
Q 022688 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~ 84 (293)
+|||+|||+++|+++|.++|++||.|.+|+|.. ++.++|||||+|.+.++|++|++.||+..|.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999965 36788999999999999999999999999999999999875321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC--
Q 022688 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (293)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-- 162 (293)
.. ......+|||+|||.++++++|.++|+.||.|..|++..+..+
T Consensus 82 ~~---------------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~s 128 (562)
T TIGR01628 82 SL---------------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKS 128 (562)
T ss_pred cc---------------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCc
Confidence 00 0011248999999999999999999999999999999887543
Q ss_pred -cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 163 -TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 163 -g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
|||||+|++.++|..|+.+++|..+. +..|.+....
T Consensus 129 kg~afV~F~~~e~A~~Ai~~lng~~~~----~~~i~v~~~~ 165 (562)
T TIGR01628 129 RGYGFVHFEKEESAKAAIQKVNGMLLN----DKEVYVGRFI 165 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhcccEec----CceEEEeccc
Confidence 79999999999999999999999998 8888876544
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=6.6e-26 Score=212.53 Aligned_cols=179 Identities=22% Similarity=0.360 Sum_probs=147.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccC----CceEEEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRVE 78 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~----g~~l~v~ 78 (293)
..++|||+|||.++|+++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|.+|++.|+|..|. |+.|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 4578999999999999999999999999999999654 567899999999999999999999999999 9999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEee
Q 022688 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR 158 (293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~ 158 (293)
++.....+........... ...........+|||+||+..+++++|+++|+.||.|..++++.
T Consensus 257 ~a~~k~er~~~~~~~~~~~-----------------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 257 RAQKRAEREAELRRKFEEL-----------------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred cccChhhhHHHHHhhHHhh-----------------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 8876533321110000000 00011123456899999999999999999999999999999998
Q ss_pred CCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCC
Q 022688 159 DSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (293)
Q Consensus 159 ~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~ 204 (293)
+..+ |+|||+|.+.++|.+|+..|||..+. |+.|.|..+.+.
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~----gk~l~V~~a~~k 364 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLG----GKPLYVALAQRK 364 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeC----CceeEEEeccCc
Confidence 8533 79999999999999999999999998 999999887753
No 13
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=6.4e-26 Score=180.95 Aligned_cols=164 Identities=22% Similarity=0.325 Sum_probs=145.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
+..++|.|.-||..+|++||+.||...|+|++|++.. ++++.||+||.|.+++||++|+..|||..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 4557889999999999999999999999999999955 5889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
++.. ....+.+|||.+||..+|+.+|+++|++||.|+...+..|.
T Consensus 119 RPSs-----------------------------------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq 163 (360)
T KOG0145|consen 119 RPSS-----------------------------------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ 163 (360)
T ss_pred cCCh-----------------------------------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc
Confidence 8661 12345699999999999999999999999999888877775
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCC
Q 022688 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (293)
Q Consensus 161 ~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~ 204 (293)
-+ |.+||.|+...+|++|++.|||..-. .+...|.|+++..+
T Consensus 164 vtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~--g~tepItVKFannP 209 (360)
T KOG0145|consen 164 VTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS--GCTEPITVKFANNP 209 (360)
T ss_pred ccceecceeEEEecchhHHHHHHHhccCCCCC--CCCCCeEEEecCCc
Confidence 44 69999999999999999999999876 23567899988654
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=3.9e-25 Score=205.33 Aligned_cols=186 Identities=19% Similarity=0.297 Sum_probs=137.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhc------------CCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCcc
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKY------------GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~------------G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i 70 (293)
+...++|||+|||+.+|+++|.++|..+ +.|..+.+. ..+|||||+|.+.++|..||. |||+.|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 3567899999999999999999999975 244444443 458999999999999999996 999999
Q ss_pred CCceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCC
Q 022688 71 DGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD 150 (293)
Q Consensus 71 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 150 (293)
.|+.|.|.................. ........ .... ............+|||+|||..+++++|.++|+.||.
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~-~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 321 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQ---KNPDDNAK--NVEK-LVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD 321 (509)
T ss_pred eCceeEecCccccCCccccCCCCCC---CCCccccc--cccc-ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 9999999755433211100000000 00000000 0000 0001112234579999999999999999999999999
Q ss_pred eEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 151 VCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 151 i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
|..+.++.+.. .|||||+|.+.++|..|+..|+|..+. |..|.|..+.
T Consensus 322 i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~----~~~l~v~~a~ 373 (509)
T TIGR01642 322 LKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG----DNKLHVQRAC 373 (509)
T ss_pred eeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEECc
Confidence 99999988753 379999999999999999999999999 8899998875
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=7.1e-26 Score=192.32 Aligned_cols=170 Identities=22% Similarity=0.382 Sum_probs=145.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCC-CccCC--ceEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDG-YNFDG--CRLRV 77 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g-~~i~g--~~l~v 77 (293)
.+.-.|||+-||..++|.||+++|++||.|.+|.|.. ++.++|||||.|.+.++|.+|+.+|+. +.|.| .+|+|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 3456799999999999999999999999999999965 478999999999999999999999987 44555 67888
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEe
Q 022688 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS 157 (293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~ 157 (293)
.++....++. ....+|||+-|+..+++.+++++|.+||.|++|.|+
T Consensus 112 k~Ad~E~er~----------------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~il 157 (510)
T KOG0144|consen 112 KYADGERERI----------------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYIL 157 (510)
T ss_pred cccchhhhcc----------------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhhe
Confidence 8887552221 235689999999999999999999999999999999
Q ss_pred eCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCCCCCC
Q 022688 158 RDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSRS 208 (293)
Q Consensus 158 ~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~~r~ 208 (293)
++..+ |+|||.|.+.+-|..|++.|||.... ..+...+-|++++..+++.
T Consensus 158 rd~~~~sRGcaFV~fstke~A~~Aika~ng~~tm-eGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 158 RDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTM-EGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ecccccccceeEEEEehHHHHHHHHHhhccceee-ccCCCceEEEecccCCCch
Confidence 98776 89999999999999999999998765 2346788899998665543
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=8.5e-25 Score=203.09 Aligned_cols=188 Identities=18% Similarity=0.255 Sum_probs=141.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||..+|+++|.++|+.||.|..+.|.. ++.++|||||+|.+.++|..|++.|||..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999999854 4778999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCC--C--------CHHHHHHHHhhcCC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS--A--------SWQDLKDHMRKAGD 150 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~--~--------~~~~l~~~f~~~G~ 150 (293)
............... ........ ............+..+|+|.|+... + ..++|+++|++||.
T Consensus 373 ~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~ 445 (509)
T TIGR01642 373 CVGANQATIDTSNGM---APVTLLAK----ALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGP 445 (509)
T ss_pred ccCCCCCCccccccc---cccccccc----cchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCC
Confidence 754221111100000 00000000 0000001112335678999998532 1 23679999999999
Q ss_pred eEEEEEeeCCC-------CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 151 VCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 151 i~~~~~~~~~~-------~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
|..|.|+.+.. .|++||+|++.++|.+|+..|||..|. |+.|.+.+..
T Consensus 446 v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~----gr~v~~~~~~ 500 (509)
T TIGR01642 446 LINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN----DRVVVAAFYG 500 (509)
T ss_pred eeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEEeC
Confidence 99999987521 269999999999999999999999999 9999888754
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=4.1e-25 Score=188.51 Aligned_cols=189 Identities=24% Similarity=0.330 Sum_probs=141.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCcc-CCceEEEEEcC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNF-DGCRLRVELAH 81 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i-~g~~l~v~~~~ 81 (293)
.+-||||.||.++.|++|.-||++.|+|-+++|+.+ +.++|||||.|.+.++|++|++.||+..| .|+.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 578999999999999999999999999999999664 78999999999999999999999999988 58999888765
Q ss_pred CCCC-------CCCC-------------------------CCCCCCCCC--CCCC-------------C---CCCCCCCC
Q 022688 82 GGSG-------RGPS-------------------------SSDRRGGYG--GGGA-------------G---GAGGAGAG 111 (293)
Q Consensus 82 ~~~~-------~~~~-------------------------~~~~~~~~~--~~~~-------------~---~~~~~~~~ 111 (293)
.+.. +... .+..+..+. -... + -++-..+=
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 3220 0000 000000000 0000 0 00000000
Q ss_pred CCCCCC----CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccC
Q 022688 112 AGAGRF----GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF 187 (293)
Q Consensus 112 ~~~~~~----~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~ 187 (293)
..+... ......-..|||.||+.++|++.|+.+|+.||.|+.|+.++| ||||.|.+.++|.+|++.+||+++
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCcee
Confidence 000000 001123458999999999999999999999999999999876 999999999999999999999999
Q ss_pred CCcCCCceeEeecCC
Q 022688 188 RNPWARGRITVKRYD 202 (293)
Q Consensus 188 ~~~~~g~~i~v~~~~ 202 (293)
. |..|.|..++
T Consensus 319 d----G~~iEvtLAK 329 (506)
T KOG0117|consen 319 D----GSPIEVTLAK 329 (506)
T ss_pred c----CceEEEEecC
Confidence 9 9999888776
No 18
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=1.3e-25 Score=181.79 Aligned_cols=146 Identities=32% Similarity=0.589 Sum_probs=134.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCCCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~~~ 86 (293)
-.|||+|||..+++.+|+.||++||+|.+|.|+ +.||||..++...|..|+..|+|.+|+|..|.|+.++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK--- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK--- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEecccc---
Confidence 469999999999999999999999999999999 679999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEE
Q 022688 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGV 166 (293)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~f 166 (293)
.....+|+|+|+.+.++.++|+..|++||+|+.++++++ |+|
T Consensus 75 ----------------------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~f 116 (346)
T KOG0109|consen 75 ----------------------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAF 116 (346)
T ss_pred ----------------------------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeE
Confidence 123458999999999999999999999999999999995 999
Q ss_pred EEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 167 VDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 167 v~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
|.|+-.++|..|++.|+++++. |..+.|....
T Consensus 117 vh~d~~eda~~air~l~~~~~~----gk~m~vq~st 148 (346)
T KOG0109|consen 117 VHFDRAEDAVEAIRGLDNTEFQ----GKRMHVQLST 148 (346)
T ss_pred EEEeeccchHHHHhcccccccc----cceeeeeeec
Confidence 9999999999999999999999 7777766543
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=3.6e-25 Score=167.84 Aligned_cols=163 Identities=23% Similarity=0.311 Sum_probs=141.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
+...||||+||+..++++.|++||-+.|+|+++.+.. +...+|||||+|.++|+|+-|++.||...+-|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 5678999999999999999999999999999999965 4568999999999999999999999999999999999977
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEEeeC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRD 159 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~ 159 (293)
... ...-.-+.++||+||.+++.+..|.+.|+.||.+.. -+++++
T Consensus 87 s~~----------------------------------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 87 SAH----------------------------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred ccc----------------------------------cccccccccccccccCcchhHHHHHHHHHhccccccCCccccc
Confidence 622 111123469999999999999999999999998866 356666
Q ss_pred CCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCC
Q 022688 160 SEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (293)
Q Consensus 160 ~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~ 204 (293)
..+ ++|||.|++.+.+..|+..|+|..+. .+.|.|..+.+.
T Consensus 133 ~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~----nr~itv~ya~k~ 177 (203)
T KOG0131|consen 133 PDTGNPKGFGFINYASFEASDAAIGSMNGQYLC----NRPITVSYAFKK 177 (203)
T ss_pred ccCCCCCCCeEEechhHHHHHHHHHHhccchhc----CCceEEEEEEec
Confidence 553 59999999999999999999999999 888888887643
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=6.4e-24 Score=194.67 Aligned_cols=193 Identities=22% Similarity=0.340 Sum_probs=141.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
+++|||+|||+.+|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|..|++.|||..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 589999999999999999999999999999999653 57799999999999999999999999999999999999763
Q ss_pred CCCCCCCCCCCC-------CCCC---------------CCCCCCCCCCCCCC------------------------C---
Q 022688 83 GSGRGPSSSDRR-------GGYG---------------GGGAGGAGGAGAGA------------------------G--- 113 (293)
Q Consensus 83 ~~~~~~~~~~~~-------~~~~---------------~~~~~~~~~~~~~~------------------------~--- 113 (293)
............ .... ....++....+... .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 321111000000 0000 00000000000000 0
Q ss_pred ---CCCCCC---CCCCcceEEEcCCCCCCC----------HHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHH
Q 022688 114 ---AGRFGI---SRHSEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKY 177 (293)
Q Consensus 114 ---~~~~~~---~~~~~~~l~v~nl~~~~~----------~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~ 177 (293)
...... ...+..+|+|.||....+ .++|.+.|.+||.|+.+.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 000000 124567899999854433 3689999999999999999877667899999999999999
Q ss_pred HHHhcCCccCCCcCCCceeEeecCC
Q 022688 178 AIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 178 a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
|+..|||..++ |+.|.+.+..
T Consensus 426 A~~~lnGr~f~----gr~i~~~~~~ 446 (457)
T TIGR01622 426 AFQALNGRYFG----GKMITAAFVV 446 (457)
T ss_pred HHHHhcCcccC----CeEEEEEEEc
Confidence 99999999999 9999887653
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=5.3e-24 Score=185.74 Aligned_cols=184 Identities=18% Similarity=0.274 Sum_probs=147.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.||||++||+.++.++|.++|+.+|+|..+.+... +..+||+||.|.-++++++|++.+++..|.|+.|.|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 89999999999999999999999999999999553 467999999999999999999999999999999999998865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC-
Q 022688 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (293)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~- 162 (293)
..............-.+.. ...+ ...-...+.+.|+|.|||+.+...+|+.+|+.||.|..+.|+....+
T Consensus 86 ~r~e~~~~~e~~~veK~~~--------q~~~-~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk 156 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIE--------QKRP-TKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK 156 (678)
T ss_pred ccchhcccccchhhhcccc--------cCCc-chhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCC
Confidence 3222111000000000000 0000 00001123679999999999999999999999999999999988776
Q ss_pred --cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 163 --g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
|||||.|....+|..|++.+|+.+|. |+.|-|+++-.
T Consensus 157 lcGFaFV~fk~~~dA~~Al~~~N~~~i~----gR~VAVDWAV~ 195 (678)
T KOG0127|consen 157 LCGFAFVQFKEKKDAEKALEFFNGNKID----GRPVAVDWAVD 195 (678)
T ss_pred ccceEEEEEeeHHHHHHHHHhccCceec----CceeEEeeecc
Confidence 79999999999999999999999999 99999998753
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=8.7e-24 Score=168.80 Aligned_cols=192 Identities=21% Similarity=0.281 Sum_probs=145.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCC--ceEEEEEc
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELA 80 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~ 80 (293)
..+|||.+||+.+|..||+++|++||.|..-+|.. ++.++|.+||.|....+|+.||+.|||..--| .+|.|+|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 46899999999999999999999999998877744 57899999999999999999999999988765 78999999
Q ss_pred CCCCCCCCCCC--CCCCCCCCCCCCCCC-------------------CCCC-------CCCCCCCCCCCCCcceEEEcCC
Q 022688 81 HGGSGRGPSSS--DRRGGYGGGGAGGAG-------------------GAGA-------GAGAGRFGISRHSEYRVIVRGL 132 (293)
Q Consensus 81 ~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~-------~~~~~~~~~~~~~~~~l~v~nl 132 (293)
..+........ +-........+|... ...+ +-.+...+.....+++|||.||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 87632221110 000000000000000 0000 0001111223345789999999
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 133 PSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 133 ~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
.+++.+.-|.++|.+||.|..+++++|..+ |||||.+.+.++|..|+..|||..++ ++.+.|.+.
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg----~rvLQVsFK 355 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG----DRVLQVSFK 355 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc----ceEEEEEEe
Confidence 999999999999999999999999999764 79999999999999999999999999 787777654
No 23
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=3.6e-23 Score=164.85 Aligned_cols=164 Identities=39% Similarity=0.689 Sum_probs=135.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCCCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~~~ 86 (293)
..|||++||+.+.+.+|..||..||.|.++.++ .||+||+|+++.+|..|+..+|+..|.|..+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 368999999999999999999999999999998 679999999999999999999999999998999988754111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEE
Q 022688 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGV 166 (293)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~f 166 (293)
. ++.+++...........+....+.+.|.+++..+.+++|.+.|.++|.+....+. .+++|
T Consensus 77 ~---------------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~----~~~~~ 137 (216)
T KOG0106|consen 77 R---------------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR----RNFAF 137 (216)
T ss_pred c---------------CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh----ccccc
Confidence 0 0000001111233445666778899999999999999999999999999554442 25899
Q ss_pred EEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 167 VDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 167 v~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
|+|...++|..|+..|++..+. ++.|.+
T Consensus 138 v~Fs~~~da~ra~~~l~~~~~~----~~~l~~ 165 (216)
T KOG0106|consen 138 VEFSEQEDAKRALEKLDGKKLN----GRRISV 165 (216)
T ss_pred eeehhhhhhhhcchhccchhhc----Cceeee
Confidence 9999999999999999999999 888888
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=6.2e-23 Score=171.18 Aligned_cols=171 Identities=20% Similarity=0.343 Sum_probs=143.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
|.||||.|.+++.|+.|+..|..||+|++|.+.+ +++.+|||||+|+-+|.|+.|++.|||.+++|+.|+|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 6799999999999999999999999999999954 5789999999999999999999999999999999999843322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC-
Q 022688 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (293)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~- 162 (293)
+.-.+.. +........-..|||..+.++++++||+..|+-||+|..|.+.+.+.+
T Consensus 194 pQAQpiI------------------------D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~ 249 (544)
T KOG0124|consen 194 PQAQPII------------------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 249 (544)
T ss_pred cccchHH------------------------HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCC
Confidence 1000000 000011123458999999999999999999999999999999998765
Q ss_pred ---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCCC
Q 022688 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (293)
Q Consensus 163 ---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~ 205 (293)
||+||+|.+.....+|+..||-..++ |.+++|-..-.++
T Consensus 250 ~HkGyGfiEy~n~qs~~eAiasMNlFDLG----GQyLRVGk~vTPP 291 (544)
T KOG0124|consen 250 GHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCVTPP 291 (544)
T ss_pred CccceeeEEeccccchHHHhhhcchhhcc----cceEecccccCCC
Confidence 69999999999999999999999999 9999988765444
No 25
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=7.5e-22 Score=172.42 Aligned_cols=194 Identities=20% Similarity=0.335 Sum_probs=139.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
+.-.|.|.|||+.+.+.+|+.+|+.||.|.+|.|+. ++...|||||+|.+..+|..|++.|||..|+|++|-|.||-.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 356799999999999999999999999999999954 566679999999999999999999999999999999999865
Q ss_pred CCCCCCCC----------------CC--CCCC--CCCCC-----------CC-----CCC----------CCC--CCC--
Q 022688 83 GSGRGPSS----------------SD--RRGG--YGGGG-----------AG-----GAG----------GAG--AGA-- 112 (293)
Q Consensus 83 ~~~~~~~~----------------~~--~~~~--~~~~~-----------~~-----~~~----------~~~--~~~-- 112 (293)
+..-.... .. ...+ +...- .+ ..+ ... .+.
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 43111100 00 0000 00000 00 000 000 000
Q ss_pred --CCCCC---CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcC
Q 022688 113 --GAGRF---GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLD 183 (293)
Q Consensus 113 --~~~~~---~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~ 183 (293)
...+. ......+.+|||.|||+++|+++|.++|++||.|.++.++.++.+ |.|||.|.+..+|..||....
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 00000 111123579999999999999999999999999999999998876 699999999999999998762
Q ss_pred -----C-ccCCCcCCCceeEeecCC
Q 022688 184 -----D-TEFRNPWARGRITVKRYD 202 (293)
Q Consensus 184 -----g-~~~~~~~~g~~i~v~~~~ 202 (293)
| ..+. |+-+.|..+-
T Consensus 356 pa~e~g~~ll~----GR~Lkv~~Av 376 (678)
T KOG0127|consen 356 PASEDGSVLLD----GRLLKVTLAV 376 (678)
T ss_pred ccCCCceEEEe----ccEEeeeecc
Confidence 2 2333 6766666543
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=5.3e-21 Score=167.64 Aligned_cols=151 Identities=26% Similarity=0.403 Sum_probs=135.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCCCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~~~ 86 (293)
.+|||| +++|+..|.++|+.+|+|.++++-.+-.+.|||||.|.++++|.+||..||...+.|++|+|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd--- 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD--- 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC---
Confidence 479998 99999999999999999999999443238999999999999999999999999999999999998744
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC--cE
Q 022688 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TY 164 (293)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--g~ 164 (293)
+ ..+||.||++.++..+|.++|+.||.|..|++..+.++ ||
T Consensus 76 ------------------------------------~-~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~ 118 (369)
T KOG0123|consen 76 ------------------------------------P-SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY 118 (369)
T ss_pred ------------------------------------C-ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee
Confidence 1 12999999999999999999999999999999999876 68
Q ss_pred EEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCCC
Q 022688 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (293)
Q Consensus 165 ~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~ 205 (293)
||+|++.++|.+|+..+||..+. +..|-+.......
T Consensus 119 -FV~f~~e~~a~~ai~~~ng~ll~----~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 119 -FVQFESEESAKKAIEKLNGMLLN----GKKIYVGLFERKE 154 (369)
T ss_pred -EEEeCCHHHHHHHHHHhcCcccC----CCeeEEeeccchh
Confidence 99999999999999999999999 7887776655433
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=4.5e-21 Score=172.52 Aligned_cols=166 Identities=23% Similarity=0.418 Sum_probs=140.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CC----CCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PP----RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~----~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
+|||.||++++|.++|..+|...|.|..+.|.. ++ .+.|||||+|.++++|+.|++.|+|..|+|..|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999998833 22 255999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC
Q 022688 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 161 (293)
..+..... ...........|+|.|+|..++..+++++|..||.|..|.++....
T Consensus 597 ~k~~~~~g--------------------------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~ 650 (725)
T KOG0110|consen 597 NKPASTVG--------------------------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIG 650 (725)
T ss_pred Cccccccc--------------------------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhc
Confidence 33111100 1112223367999999999999999999999999999999987722
Q ss_pred ----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 162 ----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 162 ----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
.|||||+|-++.+|..|++.|..+.+. |+.+.+.++..
T Consensus 651 k~a~rGF~Fv~f~t~~ea~nA~~al~STHly----GRrLVLEwA~~ 692 (725)
T KOG0110|consen 651 KGAHRGFGFVDFLTPREAKNAFDALGSTHLY----GRRLVLEWAKS 692 (725)
T ss_pred chhhccceeeeccCcHHHHHHHHhhccccee----chhhheehhcc
Confidence 269999999999999999999999999 99998888763
No 28
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1.6e-19 Score=136.48 Aligned_cols=78 Identities=45% Similarity=0.715 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.-.+.|||+||+..+++.||+.+|..||+|..|+|.. .+.|||||+|+++.+|+.|+..|+|..|+|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 4578999999999999999999999999999999965 56899999999999999999999999999999999998865
No 29
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=4.3e-20 Score=139.51 Aligned_cols=79 Identities=27% Similarity=0.395 Sum_probs=72.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
..+.|||+||+..+++.+|+.+|..||.|..|.|...+ +|||||+|+++.+|+.|+..|+|..|. |..|+|+...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-PGfAFVEFed~RDA~DAvr~LDG~~~c----G~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-PGFAFVEFEDPRDAEDAVRYLDGKDIC----GSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-CCceEEeccCcccHHHHHhhcCCcccc----CceEEEEeec
Confidence 35799999999999999999999999999999999954 579999999999999999999999999 9999999887
Q ss_pred CCCC
Q 022688 203 RSPS 206 (293)
Q Consensus 203 ~~~~ 206 (293)
..+.
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5443
No 30
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.83 E-value=7.1e-19 Score=138.92 Aligned_cols=186 Identities=19% Similarity=0.268 Sum_probs=141.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHH----HHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEE
Q 022688 2 SGRFSRTIYVGNLPSDIREYEVED----LFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (293)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~----~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 77 (293)
+-.++.||||.||+..+..++|+. ||++||+|.+|....+.+.+|-|||.|.+.+.|-.|+..|+|..|-|++++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 336777999999999999999988 9999999999999989999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCC----CCCCCCCCCCCC------CCCCCCC-----CCCCCCCCCCCCCcceEEEcCCCCCCCHHHHH
Q 022688 78 ELAHGGSGRGPSSS----DRRGGYGGGGAG------GAGGAGA-----GAGAGRFGISRHSEYRVIVRGLPSSASWQDLK 142 (293)
Q Consensus 78 ~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 142 (293)
+||+.......... ............ ...+... ..++........+...+++.|+|.+++.+.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99986532111110 000000000000 0000000 00000013335677899999999999999999
Q ss_pred HHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 143 DHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 143 ~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
.+|.+|.....+.++.... +.|||+|.+...|..|...+++..+.
T Consensus 165 ~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred HHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceec
Confidence 9999999888888777553 59999999999999999999998876
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.1e-19 Score=159.42 Aligned_cols=168 Identities=27% Similarity=0.437 Sum_probs=144.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC-CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
++...|||.||+++++..+|.++|+.||+|.+|++..+ ..++|| ||+|+++++|.+|++.|||..+.|+.|.|.....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 55566999999999999999999999999999999664 348999 9999999999999999999999999999998887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC
Q 022688 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~ 162 (293)
...+...... ....-..++|.+++.+++++.|.++|..+|.|..+.++.+..+
T Consensus 153 ~~er~~~~~~---------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g 205 (369)
T KOG0123|consen 153 KEEREAPLGE---------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIG 205 (369)
T ss_pred hhhhcccccc---------------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCC
Confidence 6444432211 1123458899999999999999999999999999999987654
Q ss_pred ---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 163 ---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
+|+||.|+++++|..|+..|++..+. +..+.|..+..
T Consensus 206 ~~~~~gfv~f~~~e~a~~av~~l~~~~~~----~~~~~V~~aqk 245 (369)
T KOG0123|consen 206 KSKGFGFVNFENPEDAKKAVETLNGKIFG----DKELYVGRAQK 245 (369)
T ss_pred CCCCccceeecChhHHHHHHHhccCCcCC----ccceeeccccc
Confidence 69999999999999999999999998 66666666654
No 32
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.83 E-value=8.2e-20 Score=141.44 Aligned_cols=79 Identities=34% Similarity=0.529 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.-++|.|-||.+-+|.++|..+|++||.|-+|.|.. +..++|||||.|....+|+.|+++|+|.+|+|+.|.|++|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 457899999999999999999999999999999955 57899999999999999999999999999999999999988
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 65
No 33
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=6.3e-20 Score=156.34 Aligned_cols=80 Identities=26% Similarity=0.358 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCC-cc--CCceEEEEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGY-NF--DGCRLRVEL 79 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~-~i--~g~~l~v~~ 79 (293)
+++.|||+-|++.+||+||+++|++||.|++|.|..+ +.++|||||.|.+.|.|..||+.|||. ++ +..+|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 3678999999999999999999999999999999774 689999999999999999999999994 33 458999999
Q ss_pred cCCCC
Q 022688 80 AHGGS 84 (293)
Q Consensus 80 ~~~~~ 84 (293)
+....
T Consensus 203 ADtqk 207 (510)
T KOG0144|consen 203 ADTQK 207 (510)
T ss_pred cccCC
Confidence 97554
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.82 E-value=2.1e-18 Score=158.45 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
..++|||+|||+++++++|+++|+.||.|..+.|..+ +.++|||||+|.+.++|.+|++.||+..|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999999653 5789999999999999999999999999999999999987
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 54
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=2.8e-19 Score=143.62 Aligned_cols=192 Identities=22% Similarity=0.285 Sum_probs=139.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCC-ccC--CceEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGY-NFD--GCRLRVE 78 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~-~i~--g~~l~v~ 78 (293)
.+.+.||||.|.+.-+|||++.+|..||.|.+|.+.. ++.++|+|||.|.+..+|..||..|+|. .+. ...|.|+
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 3678999999999999999999999999999999965 5789999999999999999999999993 333 4679999
Q ss_pred EcCCCCCCCCCC--------------------------------------------------------------------
Q 022688 79 LAHGGSGRGPSS-------------------------------------------------------------------- 90 (293)
Q Consensus 79 ~~~~~~~~~~~~-------------------------------------------------------------------- 90 (293)
++....++.-..
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 986433111000
Q ss_pred ----CCC-CCCCCCCCC---------C-CCCCCC---CCCCC--------------------------------------
Q 022688 91 ----SDR-RGGYGGGGA---------G-GAGGAG---AGAGA-------------------------------------- 114 (293)
Q Consensus 91 ----~~~-~~~~~~~~~---------~-~~~~~~---~~~~~-------------------------------------- 114 (293)
... .......+. . ..+..+ ...+.
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 000 000000000 0 000000 00000
Q ss_pred -------------------CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCc----EEEEEeCC
Q 022688 115 -------------------GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT----YGVVDYTN 171 (293)
Q Consensus 115 -------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g----~~fv~f~~ 171 (293)
.........+|+|||..||.+..+.+|.++|-+||.|+..++..|..++ |+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 0001112568999999999999999999999999999999999887663 99999999
Q ss_pred hhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 172 PEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 172 ~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
+..|+.||..|||..|+ -..++|.
T Consensus 337 p~SaQaAIqAMNGFQIG----MKRLKVQ 360 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIG----MKRLKVQ 360 (371)
T ss_pred chhHHHHHHHhcchhhh----hhhhhhh
Confidence 99999999999999998 4555444
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=5.5e-19 Score=135.46 Aligned_cols=80 Identities=25% Similarity=0.488 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
..+++|||+|||+++|+++|+++|++||+|.+|.|.. ++.+++||||+|.+.++|+.|++.||+..|+|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4678999999999999999999999999999999965 4678999999999999999999999999999999999998
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 765
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.1e-19 Score=146.17 Aligned_cols=139 Identities=27% Similarity=0.417 Sum_probs=118.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
|-+++.+||||+||+.++||+-|..||.++|.|+.++|+.+ .|.|.++
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 56788999999999999999999999999999999999754 4556665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
..+.... .+.......+||+.|...++.++|++.|.+||+|..+++++|.
T Consensus 49 ~~p~nQs------------------------------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~ 98 (321)
T KOG0148|consen 49 TAPGNQS------------------------------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM 98 (321)
T ss_pred cCcccCC------------------------------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecc
Confidence 5431110 1111224589999999999999999999999999999999997
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCCC
Q 022688 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (293)
Q Consensus 161 ~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~ 205 (293)
.+ ||+||.|-..++|+.||..|||..++ ++.|+-.++.+++
T Consensus 99 ~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG----~R~IRTNWATRKp 143 (321)
T KOG0148|consen 99 NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG----RRTIRTNWATRKP 143 (321)
T ss_pred cCCcccceeEEeccchHHHHHHHHHhCCeeec----cceeeccccccCc
Confidence 66 69999999999999999999999999 9999999998877
No 38
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=135.75 Aligned_cols=192 Identities=18% Similarity=0.256 Sum_probs=136.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCC----CcEEEEEECCHHHHHHHHHhhCCCccC---CceEEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRP----PCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRV 77 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~v 77 (293)
.-+||||.+||.++...||..||..|--.+...++.+++. +.+|||.|.+..+|..|++.|||+.|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4689999999999999999999999977888888776543 489999999999999999999999996 789999
Q ss_pred EEcCCCCCCCCCCCCC-CC---CCCCCCCC---------------CCCCCCCCCC------C------------------
Q 022688 78 ELAHGGSGRGPSSSDR-RG---GYGGGGAG---------------GAGGAGAGAG------A------------------ 114 (293)
Q Consensus 78 ~~~~~~~~~~~~~~~~-~~---~~~~~~~~---------------~~~~~~~~~~------~------------------ 114 (293)
++++............ ++ .+.....+ ..+..-+..+ +
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 9998764332211100 00 00000000 0000000000 0
Q ss_pred --------CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcc
Q 022688 115 --------GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 186 (293)
Q Consensus 115 --------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~ 186 (293)
.+.........+|||.||..++++++|+++|+.|-.....++......-.||++|++.+.|..|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 000011123458999999999999999999999987777777655444599999999999999999999999
Q ss_pred CC-CcCCCcee
Q 022688 187 FR-NPWARGRI 196 (293)
Q Consensus 187 ~~-~~~~g~~i 196 (293)
+. +...|..|
T Consensus 273 ~s~~drgg~~i 283 (284)
T KOG1457|consen 273 LSSSDRGGMHI 283 (284)
T ss_pred eccccCCCccc
Confidence 87 44444443
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.78 E-value=9.9e-19 Score=148.30 Aligned_cols=167 Identities=18% Similarity=0.313 Sum_probs=138.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEE
Q 022688 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (293)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 77 (293)
|...+.++|||++|+.+++++.|++.|.+||+|.++.++. ++.+++|+||+|.+++.+.++|. .....|+|+.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 4556899999999999999999999999999999999966 47889999999999999999998 6678899999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEe
Q 022688 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS 157 (293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~ 157 (293)
..+.+........ .......|||++||..++++++++.|.+||.|..+.++
T Consensus 80 k~av~r~~~~~~~-----------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~ 130 (311)
T KOG4205|consen 80 KRAVSREDQTKVG-----------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIM 130 (311)
T ss_pred eeccCcccccccc-----------------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEe
Confidence 9887662222111 01145699999999999999999999999999999998
Q ss_pred eCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 158 RDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 158 ~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
.+..+ +|+||.|.+.+.+.+++. ..-..+. +..+.|+.+.
T Consensus 131 ~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~----gk~vevkrA~ 174 (311)
T KOG4205|consen 131 YDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN----GKKVEVKRAI 174 (311)
T ss_pred ecccccccccceeeEeccccccceecc-cceeeec----CceeeEeecc
Confidence 88765 699999999999888876 4455555 6666676665
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.78 E-value=1.1e-19 Score=159.54 Aligned_cols=171 Identities=22% Similarity=0.304 Sum_probs=140.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
+..+|||+--|+..+++.+|.++|+.+|+|.+|.++.+ ..++|.|||+|.+.+++..||. |.|..+.|.+|.|+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 56788999999999999999999999999999999664 5789999999999999999998 9999999999999976
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
.....+.++...... + ..-..+...|||+||..++++++|+.+|++||.|..|.+..+.
T Consensus 256 Eaeknr~a~~s~a~~----~-----------------k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~ 314 (549)
T KOG0147|consen 256 EAEKNRAANASPALQ----G-----------------KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS 314 (549)
T ss_pred HHHHHHHHhcccccc----c-----------------cccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccc
Confidence 644222211111100 0 0001122239999999999999999999999999999999986
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 161 ~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
.+ |||||+|.+.++|..|+..|||.++. |+.|+|..
T Consensus 315 ~tG~skgfGfi~f~~~~~ar~a~e~lngfelA----Gr~ikV~~ 354 (549)
T KOG0147|consen 315 ETGRSKGFGFITFVNKEDARKALEQLNGFELA----GRLIKVSV 354 (549)
T ss_pred ccccccCcceEEEecHHHHHHHHHHhccceec----CceEEEEE
Confidence 33 69999999999999999999999998 88888754
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.76 E-value=1.1e-17 Score=146.93 Aligned_cols=189 Identities=24% Similarity=0.342 Sum_probs=134.5
Q ss_pred eEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCC
Q 022688 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~ 84 (293)
.|||+||.+++++++|+.+|+.||.|..|.+.. +|.++||+||+|.+.++|..|+..|||..|.|+.|+|.......
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 399999999999999999999999999999954 58899999999999999999999999999999999998765442
Q ss_pred CCCCC---CCCCC----CCCCCCCCCCC-------CCCC---------------CCCC----C----CCCCCCC------
Q 022688 85 GRGPS---SSDRR----GGYGGGGAGGA-------GGAG---------------AGAG----A----GRFGISR------ 121 (293)
Q Consensus 85 ~~~~~---~~~~~----~~~~~~~~~~~-------~~~~---------------~~~~----~----~~~~~~~------ 121 (293)
..... ..+.. ..+..+.++.. .+.+ .... . .....+.
T Consensus 360 ~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 439 (549)
T KOG0147|consen 360 DTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAF 439 (549)
T ss_pred ccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccccc
Confidence 22211 11111 00100000000 0000 0000 0 0011112
Q ss_pred -CCcceEEEcCCC--CCCC--------HHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCc
Q 022688 122 -HSEYRVIVRGLP--SSAS--------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (293)
Q Consensus 122 -~~~~~l~v~nl~--~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~ 190 (293)
.++.++.+.|+= ...| .+++.+.+.+||+|..|.+..+.. |+.||.|.+.+.|..|+.+|||..|.
T Consensus 440 ~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF~-- 516 (549)
T KOG0147|consen 440 DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWFA-- 516 (549)
T ss_pred CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhhc--
Confidence 456677777762 2222 247888999999998887777655 89999999999999999999999999
Q ss_pred CCCceeEeecC
Q 022688 191 WARGRITVKRY 201 (293)
Q Consensus 191 ~~g~~i~v~~~ 201 (293)
|+-|...+-
T Consensus 517 --gr~Ita~~~ 525 (549)
T KOG0147|consen 517 --GRMITAKYL 525 (549)
T ss_pred --cceeEEEEe
Confidence 888877654
No 42
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=4.9e-17 Score=132.78 Aligned_cols=81 Identities=33% Similarity=0.565 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
++|=+||||+-|+++++|.+|+..|+.||+|+.|.|+. +++++|||||+|+++.+...|++..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 47889999999999999999999999999999999954 689999999999999999999999999999999999999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
....
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 8765
No 43
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.74 E-value=1.3e-18 Score=146.63 Aligned_cols=185 Identities=17% Similarity=0.149 Sum_probs=123.9
Q ss_pred CCC-CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC------CCCCcEEEEEECCHHHHHHHHHhhCCCccCCc
Q 022688 1 MSG-RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (293)
Q Consensus 1 m~~-~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~ 73 (293)
|++ .....|.|.||.+.+|.++|+.||..+|+|.++.|+.+ +.....|||.|.+...+..|.. |..++|-++
T Consensus 1 ~~gg~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdr 79 (479)
T KOG4676|consen 1 GVGGSSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDR 79 (479)
T ss_pred CCCCCCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeee
Confidence 455 45569999999999999999999999999999999652 2345799999999999999999 777777788
Q ss_pred eEEEEEcCCCCCCCC----CCCCCCCCCC-CCCCCCCCCCCCCCCCCCC-----CCCC---------CC--cceEEEcCC
Q 022688 74 RLRVELAHGGSGRGP----SSSDRRGGYG-GGGAGGAGGAGAGAGAGRF-----GISR---------HS--EYRVIVRGL 132 (293)
Q Consensus 74 ~l~v~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~---------~~--~~~l~v~nl 132 (293)
.|.|........... +......... ..++|-.++.......+.. ..+. .+ ..+++|++|
T Consensus 80 aliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl 159 (479)
T KOG4676|consen 80 ALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSL 159 (479)
T ss_pred eEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcc
Confidence 877776554321111 0000000000 0001111111111000000 0000 11 247999999
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccC
Q 022688 133 PSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF 187 (293)
Q Consensus 133 ~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~ 187 (293)
+..+-..++.+.|..+|.|.+.++......-+|.++|........|+. ++|.++
T Consensus 160 ~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 160 ISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred hhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 999999999999999999998888776666688899988888777777 555554
No 44
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.73 E-value=3.1e-16 Score=133.15 Aligned_cols=192 Identities=16% Similarity=0.184 Sum_probs=144.5
Q ss_pred CCeEEEcCCCCC-CcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCC
Q 022688 6 SRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (293)
Q Consensus 6 ~~~l~V~nLp~~-~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~ 84 (293)
+..|.|.||..+ +|++-|..+|.-||.|..|+|.... +..|.|+|.+...|+.|++.|+|.+|.|+.|+|.+++-..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 689999999655 9999999999999999999997543 3689999999999999999999999999999999998653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcE
Q 022688 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY 164 (293)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~ 164 (293)
-..+...+...++...-+...--....++...+....++..++++.|+|.++++++++.+|..-|..........++..+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 33322222221111111111111111222333344456778999999999999999999999999776665555555569
Q ss_pred EEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 165 ~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
+++.+++.++|..|+-.+|...++. +-.++|.+.+
T Consensus 455 al~q~~sveeA~~ali~~hnh~lge---n~hlRvSFSk 489 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGE---NHHLRVSFSK 489 (492)
T ss_pred eecccCChhHhhhhccccccccCCC---CceEEEEeec
Confidence 9999999999999999999999882 4477777654
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.73 E-value=3.4e-16 Score=133.96 Aligned_cols=184 Identities=28% Similarity=0.469 Sum_probs=133.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHH-hcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
-.+.+||+|||+++.+++|++||. +.|+|.+|.+..+ ++++|+|.|+|+++|.+++|++.||...+.|++|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346799999999999999999997 5889999999765 7899999999999999999999999999999999998765
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCC--C-----CCCCCCCCC---------------------CCCC--------------
Q 022688 82 GGSGRGPSS--SDRRGGYGGGGAG--G-----AGGAGAGAG---------------------AGRF-------------- 117 (293)
Q Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~--~-----~~~~~~~~~---------------------~~~~-------------- 117 (293)
......-.. ..-...+....+. + .++++.+.. ...+
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 431111000 0000000000000 0 000000000 0000
Q ss_pred ------CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 118 ------GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 118 ------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
....+....+||.||.+.+....|.+.|.-.|.|..+.+-.++.+ |++.++|.++-+|..|+..+++..+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 001123457899999999999999999999999999988877655 69999999999999999999975543
No 46
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.71 E-value=9.3e-17 Score=124.58 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=72.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
....|.|.||.+.++.++|..+|++||.|-+|.|+.+..+ |||||.|....+|+.|++.|+|..++ |+.|+|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld----gRelrV 87 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD----GRELRV 87 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec----cceeee
Confidence 3468999999999999999999999999999999999876 79999999999999999999999999 999999
Q ss_pred ecCCC
Q 022688 199 KRYDR 203 (293)
Q Consensus 199 ~~~~~ 203 (293)
..++-
T Consensus 88 q~ary 92 (256)
T KOG4207|consen 88 QMARY 92 (256)
T ss_pred hhhhc
Confidence 88773
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.71 E-value=4.3e-16 Score=135.43 Aligned_cols=167 Identities=22% Similarity=0.236 Sum_probs=130.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC-CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
..-.|.+.+||.++|++||.++|+.+ .|..+.+..+ +++.|-|||+|.+++++++|++ .+...+..+-|.|..+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 45568889999999999999999999 5889888665 8999999999999999999999 8999999999999987765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEEeeC---
Q 022688 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRD--- 159 (293)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~--- 159 (293)
+....+...... .......|.+.+||+.+|++||.++|+..-.+.. +.++.+
T Consensus 87 e~d~~~~~~g~~------------------------s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rg 142 (510)
T KOG4211|consen 87 EADWVMRPGGPN------------------------SSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRG 142 (510)
T ss_pred cccccccCCCCC------------------------CCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCC
Confidence 332222211110 0123458999999999999999999998754444 333333
Q ss_pred CCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 160 SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 160 ~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
+.+|-|||.|++.+.|+.|+. -|...|+ .+.|.|-.+.
T Consensus 143 R~tGEAfVqF~sqe~ae~Al~-rhre~iG----hRYIEvF~Ss 180 (510)
T KOG4211|consen 143 RPTGEAFVQFESQESAEIALG-RHRENIG----HRYIEVFRSS 180 (510)
T ss_pred CcccceEEEecCHHHHHHHHH-HHHHhhc----cceEEeehhH
Confidence 345799999999999999998 5666666 6777776543
No 48
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=2.9e-17 Score=117.77 Aligned_cols=80 Identities=38% Similarity=0.562 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
+.++||||+||++.+|||+|.+||+++|+|..|.| ..+..+-|||||+|.+.++|..|+..++|..++.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 56899999999999999999999999999999988 234567799999999999999999999999999999999987
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 654
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=8.5e-17 Score=108.31 Aligned_cols=68 Identities=40% Similarity=0.764 Sum_probs=64.1
Q ss_pred EEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEE
Q 022688 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (293)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 76 (293)
|||+|||+++|+++|+++|++||.|..+.+.. .+..+++|||+|.+.++|+.|++.|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999965 367889999999999999999999999999999885
No 50
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=8e-16 Score=139.00 Aligned_cols=192 Identities=22% Similarity=0.299 Sum_probs=139.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
+..+.|+|+|||..+..++|...|..||.|..+.++.. -.-|+|+|.++.+|.+|+..|....+...++.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 34688999999999999999999999999999966532 225999999999999999999999999999999988643
Q ss_pred CCCCC-CCCCCCCCCCCC--CCCC---CCCCCC-----C--C-CCCCCCCCC-CCcceEEEcCCCCCCCHHHHHHHHhhc
Q 022688 84 SGRGP-SSSDRRGGYGGG--GAGG---AGGAGA-----G--A-GAGRFGISR-HSEYRVIVRGLPSSASWQDLKDHMRKA 148 (293)
Q Consensus 84 ~~~~~-~~~~~~~~~~~~--~~~~---~~~~~~-----~--~-~~~~~~~~~-~~~~~l~v~nl~~~~~~~~l~~~f~~~ 148 (293)
.-... ....-....... .+.. ....+. . . ......... .....|||.||+..++.++|..+|...
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 22211 000000000000 0000 000000 0 0 000000011 112239999999999999999999999
Q ss_pred CCeEEEEEeeCCCC-------cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 149 GDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 149 G~i~~~~~~~~~~~-------g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
|.|..+.|...+++ |||||+|.+.++|+.|+..|+|+.+. |..|.+..+.
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld----GH~l~lk~S~ 596 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD----GHKLELKISE 596 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec----CceEEEEecc
Confidence 99999988776655 89999999999999999999999999 8898888876
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.68 E-value=3e-16 Score=128.63 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..++..+|||||+|.++++|+.|+. |||..|.|+.|.|.++...
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 36899999999999999999999999999999998877778999999999999999997 9999999999999998755
No 52
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=2e-15 Score=131.94 Aligned_cols=79 Identities=29% Similarity=0.478 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCC--ceEEEEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~ 79 (293)
..++|||+|||.++|+++|+++|++||.|+.+.|.. ++.+++||||+|.+.++|++||+.||+..|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999964 46788999999999999999999999999876 7899999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 8865
No 53
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.66 E-value=9.4e-16 Score=140.84 Aligned_cols=135 Identities=21% Similarity=0.315 Sum_probs=100.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhc--CCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
..++|||+|||.++|+++|+++|+.| |+|+.|.+. ++||||+|.+.++|++|++.||+..|+|+.|.|.++++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 45789999999999999999999999 999999876 57999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeE
Q 022688 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRF-GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~ 152 (293)
....... .+..+.++ .+.......... ........++++.|+++..+++.+.++|...|.+.
T Consensus 307 ~~~~~~~------~~~rg~gg--~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYV------RYTRGTGG--RGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCccccc------ccccccCC--CcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 5221110 00000000 000000111111 12233567999999999999999999999988764
No 54
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.65 E-value=8.8e-15 Score=122.00 Aligned_cols=191 Identities=20% Similarity=0.199 Sum_probs=138.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeE--------EEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~--------v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~ 73 (293)
.-++.|||.|||.++|.+++.++|++||-|.. |+|.. .|..+|=|.+.|-..+++..|+..|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 34678999999999999999999999997753 55544 478899999999999999999999999999999
Q ss_pred eEEEEEcCCCCCCC--CCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCC----CCCC---
Q 022688 74 RLRVELAHGGSGRG--PSSSDRRGGYG-------GGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLP----SSAS--- 137 (293)
Q Consensus 74 ~l~v~~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~----~~~~--- 137 (293)
.|+|+.|+-..... ........+.. .....++.. ....+......++|.+.|+- ...+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~p------d~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l 285 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRP------DRDDPSKARADRTVILKNMFTPEDFEKNPDL 285 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCC------CccccccccCCcEEEeeecCCHHHhccCHHH
Confidence 99999987431111 00000000000 000000000 00011122345688888863 2222
Q ss_pred ----HHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCC
Q 022688 138 ----WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (293)
Q Consensus 138 ----~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~ 204 (293)
+++|.+.+.+||.|..+.+....+.|.+-|.|.+.++|..|+..|+|..+. |+.|......+.
T Consensus 286 ~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fd----gRql~A~i~DG~ 352 (382)
T KOG1548|consen 286 LNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFD----GRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeec----ceEEEEEEeCCc
Confidence 357788899999999999998888899999999999999999999999999 999987766543
No 55
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.64 E-value=1.4e-15 Score=122.63 Aligned_cols=81 Identities=25% Similarity=0.242 Sum_probs=74.6
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
|.. ...+|||+||++.+|+++|+++|+.||+|.+|.|..++...++|||+|+++++|..|+. |||..|.+++|.|..+
T Consensus 1 m~~-~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 1 MYP-GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCC-CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 443 34899999999999999999999999999999999888888999999999999999997 9999999999999987
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 79 ~~y 81 (243)
T PLN03121 79 GQY 81 (243)
T ss_pred ccc
Confidence 654
No 56
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=1.5e-15 Score=104.97 Aligned_cols=82 Identities=33% Similarity=0.430 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
...-++.|||.|||+++|.+++.++|.+||.|..|+|=.+..-+|.|||.|++..+|.+|+..|+|..++++.|.|-+..
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 34567899999999999999999999999999999996666679999999999999999999999999999999999877
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 54
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.5e-15 Score=118.84 Aligned_cols=80 Identities=35% Similarity=0.525 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
+++++|-|.||+.++++++|++||.+||.|..|.|. .+|.++|||||.|.+.++|++||..|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 578899999999999999999999999999999994 46899999999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 58
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=5e-15 Score=99.70 Aligned_cols=68 Identities=29% Similarity=0.605 Sum_probs=61.1
Q ss_pred EEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEE
Q 022688 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (293)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 76 (293)
|||+|||+.+++++|.++|+.||.|..+.+... +..+++|||+|.++++|..|+..+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999654 56789999999999999999999999999999874
No 59
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.56 E-value=9.9e-14 Score=106.42 Aligned_cols=81 Identities=26% Similarity=0.394 Sum_probs=73.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
.....+|||+|||..+++++|+++|.+||.|..+.++.+..+ |||||+|++.++|+.|++.|++..+. ++.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~----Gr~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN----GRHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CEEE
Confidence 445679999999999999999999999999999999988643 69999999999999999999999999 9999
Q ss_pred EeecCCCCC
Q 022688 197 TVKRYDRSP 205 (293)
Q Consensus 197 ~v~~~~~~~ 205 (293)
+|..+...+
T Consensus 107 ~V~~a~~~~ 115 (144)
T PLN03134 107 RVNPANDRP 115 (144)
T ss_pred EEEeCCcCC
Confidence 999886543
No 60
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.56 E-value=1.1e-13 Score=118.28 Aligned_cols=145 Identities=27% Similarity=0.452 Sum_probs=109.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
.++|||+|||.++|+++|.++|..||.|..+.+..+ +.++|||||+|.++++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 599999999999999999999999999999998554 68999999999999999999999999999999999999764
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC
Q 022688 83 -GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (293)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 161 (293)
...+............. ...............+++.+++..++..++...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAK------------KLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhc------------cccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 10111000000000000 00011122334567899999999999999999999999997766665543
Q ss_pred C
Q 022688 162 G 162 (293)
Q Consensus 162 ~ 162 (293)
.
T Consensus 263 ~ 263 (306)
T COG0724 263 G 263 (306)
T ss_pred C
Confidence 3
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=4.1e-13 Score=112.84 Aligned_cols=77 Identities=25% Similarity=0.455 Sum_probs=70.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
+.|||..+.++++++||+..|+.||+|+.|.+.. ....+||+||+|.+..+-..|+..||=+.++|+.|+|..+-.+
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 5799999999999999999999999999999954 3467999999999999999999999999999999999887644
No 62
>smart00362 RRM_2 RNA recognition motif.
Probab=99.55 E-value=4.8e-14 Score=94.71 Aligned_cols=71 Identities=41% Similarity=0.739 Sum_probs=65.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC-CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEE
Q 022688 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 78 (293)
+|||+|||..+++++|+++|.+||+|..+.+..+ +.+.++|||+|.+.++|+.|+..+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999988654 5678999999999999999999999999999998873
No 63
>PLN03213 repressor of silencing 3; Provisional
Probab=99.54 E-value=2.8e-14 Score=124.14 Aligned_cols=77 Identities=18% Similarity=0.338 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCH--HHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA--RDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~--~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
....+||||||++++|+++|..+|+.||.|..|.|+.... +|||||+|... .++.+||..|||..|.|+.|+|+.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 4567999999999999999999999999999999975433 99999999987 78999999999999999999999986
No 64
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=6.4e-16 Score=117.62 Aligned_cols=80 Identities=28% Similarity=0.476 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++..|||||||+++||.||.-+|++||+|++|.+.. ||.++||||+.|+++.+...|+..|||..|.|+.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4678899999999999999999999999999999955 6899999999999999999999999999999999999987
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 765
No 65
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=2e-14 Score=119.07 Aligned_cols=80 Identities=26% Similarity=0.470 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC-CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
...+.|+|.|||+..-+.||+.+|.+||+|.+|.|+.. ..+|||+||+|++++||++|-++|||..|.|++|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 45678999999999999999999999999999999664 56899999999999999999999999999999999998875
Q ss_pred C
Q 022688 83 G 83 (293)
Q Consensus 83 ~ 83 (293)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 5
No 66
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.4e-14 Score=104.99 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
+.-.|||.++...+|+++|.+.|..||+|++|.+.. ++-.+|||+|+|++.++|++|+..|||..|.|+.|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 445799999999999999999999999999999954 57789999999999999999999999999999999999998
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 65
No 67
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=3.8e-14 Score=126.36 Aligned_cols=182 Identities=20% Similarity=0.303 Sum_probs=133.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
..+.|||++||..+++.++.++...||.+..+.+.. ++.++||||.+|.++.-...|+..|||+.++++.|.|+.+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 457899999999999999999999999999998854 46899999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCC--CCCC-CH-------HHHHHHHhhcCC
Q 022688 82 GGSGRGPSSSDR-RGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGL--PSSA-SW-------QDLKDHMRKAGD 150 (293)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl--~~~~-~~-------~~l~~~f~~~G~ 150 (293)
............ .....+. .--.......+...|.+.|+ |.+. .+ ++++..+.+||.
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i------------~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~ 435 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGI------------PLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA 435 (500)
T ss_pred ccchhccccCCccccccccc------------hhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc
Confidence 653222211110 0000000 00000122233445555443 1111 11 356777889999
Q ss_pred eEEEEEeeC-CC------CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 151 VCFAEVSRD-SE------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 151 i~~~~~~~~-~~------~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
|..|.+.++ .. .|..||+|++.+++++|+.+|+|..+. ++.+...+..
T Consensus 436 v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~----nRtVvtsYyd 490 (500)
T KOG0120|consen 436 VRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA----NRTVVASYYD 490 (500)
T ss_pred eeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC----CcEEEEEecC
Confidence 999999888 22 269999999999999999999999999 7877766543
No 68
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.50 E-value=1.7e-12 Score=110.73 Aligned_cols=188 Identities=17% Similarity=0.232 Sum_probs=131.5
Q ss_pred eEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccC-C-ceEEEEEcCCCCC
Q 022688 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-G-CRLRVELAHGGSG 85 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~-g-~~l~v~~~~~~~~ 85 (293)
.++|.|+-+.+|-+-|.++|++||.|..|.... ....--|.|+|.+.+.|..|...|+|.-|- | ..|+|.|++-..-
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~-Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~L 230 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT-KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDL 230 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEe-cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccc
Confidence 468899999999999999999999998875542 223345889999999999999999997774 3 5677777652210
Q ss_pred CC--CCCCC---CCCCCCCC-----------------C-CCCCC----CCCC--CCCCCCCCCCCCCcceEEEcCCC-CC
Q 022688 86 RG--PSSSD---RRGGYGGG-----------------G-AGGAG----GAGA--GAGAGRFGISRHSEYRVIVRGLP-SS 135 (293)
Q Consensus 86 ~~--~~~~~---~~~~~~~~-----------------~-~~~~~----~~~~--~~~~~~~~~~~~~~~~l~v~nl~-~~ 135 (293)
-. .+.+. .......+ . ..+.+ .+.. ....+....+. .+..|.|.||. +.
T Consensus 231 nvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~-~n~vllvsnln~~~ 309 (492)
T KOG1190|consen 231 NVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPS-ANVVLLVSNLNEEA 309 (492)
T ss_pred eeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCC-CceEEEEecCchhc
Confidence 00 00000 00000000 0 00000 0000 00001111111 25788888886 78
Q ss_pred CCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 136 ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 136 ~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
+|.+.|..+|.-||+|..|+|..++. --|.|+|.+...|+-|+..|+|..+. |+.|+|...+
T Consensus 310 VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~----gk~lrvt~SK 371 (492)
T KOG1190|consen 310 VTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLY----GKKLRVTLSK 371 (492)
T ss_pred cchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceec----CceEEEeecc
Confidence 89999999999999999999999875 48999999999999999999999999 8999998876
No 69
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=5.8e-13 Score=109.19 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=71.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+-++|||.-|++++++..|+..|+.||+|..+.|+.+.-+ |||||+|++..+...|.+..+|..|+ |+.|-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id----grri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID----GRRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec----CcEEE
Confidence 46689999999999999999999999999999999998544 69999999999999999999999999 88888
Q ss_pred eecCC
Q 022688 198 VKRYD 202 (293)
Q Consensus 198 v~~~~ 202 (293)
|+...
T Consensus 175 VDvER 179 (335)
T KOG0113|consen 175 VDVER 179 (335)
T ss_pred EEecc
Confidence 88755
No 70
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.1e-14 Score=119.01 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
|.+.|||..|.|-+|.++|.-+|+.||+|..|.|+. ++.+..||||+|++.++|++|+-+|++..|+++.|.|.|++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 789999999999999999999999999999999965 57889999999999999999999999999999999999988
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
+-
T Consensus 318 SV 319 (479)
T KOG0415|consen 318 SV 319 (479)
T ss_pred hh
Confidence 65
No 71
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=6.3e-14 Score=111.34 Aligned_cols=75 Identities=25% Similarity=0.399 Sum_probs=69.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
++||||+|+.+++.+.|++.|++||+|++..|+. +++++||+||+|.+.+.|.+|.+ -..-.|+|++-.|.++.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhh
Confidence 6899999999999999999999999999998854 57999999999999999999999 556889999999998875
No 72
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=7e-13 Score=89.46 Aligned_cols=72 Identities=38% Similarity=0.741 Sum_probs=66.2
Q ss_pred eEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCC--CCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
+|+|+|||+.+++++|.++|..||.|..+.+..+. .+.++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999997543 4689999999999999999999999999999999864
No 73
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=8.8e-14 Score=109.15 Aligned_cols=82 Identities=33% Similarity=0.523 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
..++|||++|..++|+.-|...|-.||.|++|.++.+ .+.+|||||+|...|+|..||..||+..+.|+.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4689999999999999999999999999999999654 6789999999999999999999999999999999999998
Q ss_pred CCCCC
Q 022688 82 GGSGR 86 (293)
Q Consensus 82 ~~~~~ 86 (293)
+....
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 76433
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.45 E-value=8.1e-12 Score=107.43 Aligned_cols=75 Identities=28% Similarity=0.581 Sum_probs=66.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
...++|+|.|||.+.|++.|++-|..||.|.++.|+.... -.+.|.|.++++|+.|+..|+|..+. |+.|.|.++
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gk-skGVVrF~s~edAEra~a~Mngs~l~----Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGK-SKGVVRFFSPEDAERACALMNGSRLD----GRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCC-ccceEEecCHHHHHHHHHHhccCccc----CceeeeeeC
Confidence 3457899999999999999999999999999999954432 26689999999999999999999999 999998763
No 75
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.45 E-value=2.2e-11 Score=102.85 Aligned_cols=192 Identities=16% Similarity=0.149 Sum_probs=136.9
Q ss_pred CCCCeEEEcCCC--CCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccC-C-ceEEEEE
Q 022688 4 RFSRTIYVGNLP--SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-G-CRLRVEL 79 (293)
Q Consensus 4 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~-g-~~l~v~~ 79 (293)
.++..|.+.=|. +.+|.+-|.++....|+|..|.|... +---|+|||++.+.|++|.+.|||..|- | ..|+|+|
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 566666666554 45999999999999999999999643 2347999999999999999999998874 3 6799999
Q ss_pred cCCCCCCC-----CCC-------------------CCCCCCCCCCCCCCCCC----CCC------CCC------------
Q 022688 80 AHGGSGRG-----PSS-------------------SDRRGGYGGGGAGGAGG----AGA------GAG------------ 113 (293)
Q Consensus 80 ~~~~~~~~-----~~~-------------------~~~~~~~~~~~~~~~~~----~~~------~~~------------ 113 (293)
+++..-.- ..+ ..+...+.+.....++| ... ...
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 97543100 000 01111111111000000 000 000
Q ss_pred -CCCCCCCCCCcceEEEcCCC-CCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcC
Q 022688 114 -AGRFGISRHSEYRVIVRGLP-SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (293)
Q Consensus 114 -~~~~~~~~~~~~~l~v~nl~-~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~ 191 (293)
+...+....+++.+.|.+|. ..++.+.|..+|..||.|..+++++.+. |.|.|++.+..+.+.|+..||+..+-
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-gtamVemgd~~aver~v~hLnn~~lf--- 351 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-GTAMVEMGDAYAVERAVTHLNNIPLF--- 351 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-ceeEEEcCcHHHHHHHHHHhccCccc---
Confidence 00111334567899999998 5668889999999999999999999764 69999999999999999999999998
Q ss_pred CCceeEeecCC
Q 022688 192 ARGRITVKRYD 202 (293)
Q Consensus 192 ~g~~i~v~~~~ 202 (293)
|.+|.+...+
T Consensus 352 -G~kl~v~~Sk 361 (494)
T KOG1456|consen 352 -GGKLNVCVSK 361 (494)
T ss_pred -cceEEEeecc
Confidence 8888887765
No 76
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.44 E-value=7.3e-13 Score=84.90 Aligned_cols=56 Identities=34% Similarity=0.584 Sum_probs=51.0
Q ss_pred HHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 23 VEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 23 l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
|.++|++||+|..+.+.... .++|||+|.+.++|..|++.|||..|.|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997654 599999999999999999999999999999999985
No 77
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=6e-13 Score=88.96 Aligned_cols=68 Identities=41% Similarity=0.728 Sum_probs=62.4
Q ss_pred EcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEE
Q 022688 11 VGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (293)
Q Consensus 11 V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 78 (293)
|+|||..+++++|+++|..||.|..+.+..+ +.++++|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999999999653 5678999999999999999999999999999998873
No 78
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.42 E-value=8e-13 Score=88.70 Aligned_cols=67 Identities=25% Similarity=0.491 Sum_probs=60.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 127 l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
|||+|||..+++++|.++|++||.|..+.+..+..+ ++|||+|++.++|..|+..|+|..+. +..|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~----~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN----GRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC----ccCcC
Confidence 799999999999999999999999999999986322 69999999999999999999999998 76664
No 79
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.42 E-value=2.5e-11 Score=102.48 Aligned_cols=193 Identities=14% Similarity=0.113 Sum_probs=138.7
Q ss_pred CCCCeEEEcCCCCC-CcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
-+.+.++|-+|... ++.+.|.++|..||.|..|+++.+. .|.|+|++-+....+.|+..||+..+.|.+|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 46789999999766 8899999999999999999997653 58999999999999999999999999999999999886
Q ss_pred CCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCC-eEEEEEee
Q 022688 83 GSGRGPSS---SDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSR 158 (293)
Q Consensus 83 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~ 158 (293)
..-..-.. ++....+....... .-....+..........+.++|+..|.|..+|+++|..+|...+. ...+++..
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~Sk-NnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp 441 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSK-NNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFP 441 (494)
T ss_pred cccccCCceecCCCCcchhhccccc-ccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeec
Confidence 53222111 00000000000000 000011112223344567889999999999999999999998763 34555554
Q ss_pred CCCC--cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 159 DSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 159 ~~~~--g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
.+.- -.+.++|++.++|.+|+.++|...+.++...-...++
T Consensus 442 ~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilK 484 (494)
T KOG1456|consen 442 LKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILK 484 (494)
T ss_pred ccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeee
Confidence 4322 3789999999999999999999999865554444333
No 80
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.41 E-value=7e-13 Score=117.64 Aligned_cols=79 Identities=32% Similarity=0.579 Sum_probs=74.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
++|||||||+++++++|.++|+..|.|..+++.. +|.++||||++|.++++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999965 5789999999999999999999999999999999999999866
Q ss_pred CC
Q 022688 84 SG 85 (293)
Q Consensus 84 ~~ 85 (293)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 81
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.40 E-value=4.3e-13 Score=109.54 Aligned_cols=94 Identities=33% Similarity=0.582 Sum_probs=84.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
..+++|+|+||.+.++.+||+..|++||+|+++.|. ++|+||.|.-.++|..|+..||+..|.|++++|+.+.+.
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 578999999999999999999999999999999998 679999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 022688 84 SGRGPSSSDRRGGYGGGGA 102 (293)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~ 102 (293)
....+...+..+++..+.-
T Consensus 151 lrtapgmgDq~~cyrcGke 169 (346)
T KOG0109|consen 151 LRTAPGMGDQSGCYRCGKE 169 (346)
T ss_pred cccCCCCCCHHHheecccc
Confidence 7777666666666655543
No 82
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=4.8e-13 Score=113.05 Aligned_cols=189 Identities=20% Similarity=0.218 Sum_probs=126.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHh---c-CCeeEEEE-ec-CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYK---Y-GRILDIEL-KI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~---~-G~I~~v~i-~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 78 (293)
..-.|-+++||+++|+.|+.++|.. . |.++.|.+ .. +++..|-|||.|..+++|+.|+. -|...++-+.|.+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 3456788999999999999999962 1 22334433 44 78999999999999999999998 56666666666554
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcC-CeEE--EE
Q 022688 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCF--AE 155 (293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~i~~--~~ 155 (293)
.+...+-..--......... ++. +....+.......++.....+|-+.+||+.++.++|.++|..|. .|.. ++
T Consensus 239 RSTaaEvqqvlnr~~s~pLi-~~~---~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVH 314 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLI-PGL---TSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVH 314 (508)
T ss_pred HHhHHHHHHHHHhhcccccc-CCC---CCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeE
Confidence 43311000000000000000 000 00000011222233344467999999999999999999999987 4544 77
Q ss_pred EeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 156 VSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 156 ~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
+..+..+ |-|||+|.+.++|..|..+.|.+.+. +++|.|-...
T Consensus 315 mv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk----~RYiEvfp~S 360 (508)
T KOG1365|consen 315 MVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMK----SRYIEVFPCS 360 (508)
T ss_pred EEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcc----cceEEEeecc
Confidence 7776554 79999999999999999999999887 8888887654
No 83
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=8.7e-13 Score=113.63 Aligned_cols=77 Identities=27% Similarity=0.502 Sum_probs=71.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCCC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSG 85 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~~ 85 (293)
-..|||.||+.++|+|.|+++|.+||.|..|+.+ +.||||.|.+-++|.+||+.+||..|+|..|.|.+|++...
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 3679999999999999999999999999999887 45999999999999999999999999999999999997754
Q ss_pred CC
Q 022688 86 RG 87 (293)
Q Consensus 86 ~~ 87 (293)
..
T Consensus 334 ~k 335 (506)
T KOG0117|consen 334 KK 335 (506)
T ss_pred hc
Confidence 43
No 84
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=2e-12 Score=93.93 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=72.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
...++.|||.++.+.+++++|.+.|..||+|..+++..+..+ |||+|+|++.++|+.|+..+||..+. +..|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll----~q~v 144 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL----GQNV 144 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh----CCce
Confidence 356889999999999999999999999999999999998876 59999999999999999999999999 9999
Q ss_pred EeecCC
Q 022688 197 TVKRYD 202 (293)
Q Consensus 197 ~v~~~~ 202 (293)
.|+++-
T Consensus 145 ~VDw~F 150 (170)
T KOG0130|consen 145 SVDWCF 150 (170)
T ss_pred eEEEEE
Confidence 998864
No 85
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=2.4e-12 Score=106.86 Aligned_cols=77 Identities=26% Similarity=0.331 Sum_probs=71.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC--cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
.....|+|.|+|....+.||+.+|.+||+|.+|+|+.+..+ |||||+|++.++|++|..+|||..+. |++|.|.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE----GRkIEVn 169 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE----GRKIEVN 169 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee----ceEEEEe
Confidence 34569999999999999999999999999999999988755 89999999999999999999999999 9999998
Q ss_pred cCC
Q 022688 200 RYD 202 (293)
Q Consensus 200 ~~~ 202 (293)
-+.
T Consensus 170 ~AT 172 (376)
T KOG0125|consen 170 NAT 172 (376)
T ss_pred ccc
Confidence 765
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.33 E-value=8.7e-12 Score=102.54 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=68.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC-CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
..+|||+|||+.+++++|+++|+.||+|..+.|..+.. .|||||+|++.++|..|+. |+|..+. |+.|.|..+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~----gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV----DQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC----CceEEEEecc
Confidence 46999999999999999999999999999999998864 4899999999999999995 9999999 9999999875
No 87
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=5e-12 Score=91.06 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
...++|||+||+.-+++++|.++|+.+|+|..|.|=.++.+ |||||+|.+.++|+.|++.++|+.+. .+.|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd----dr~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD----DRPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc----cccee
Confidence 35679999999999999999999999999999887766554 79999999999999999999999999 89999
Q ss_pred eecCC
Q 022688 198 VKRYD 202 (293)
Q Consensus 198 v~~~~ 202 (293)
++++.
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 99876
No 88
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=1.9e-11 Score=93.70 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=72.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC-CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
..+.|||+|||.++.+.+|+++|-+||.|..|.+...+. ..||||+|+++.+|+.|+..-+|..+. |..++|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd----g~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD----GCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC----cceEEEEec
Confidence 357999999999999999999999999999999876654 369999999999999999999999999 999999999
Q ss_pred CCCCC
Q 022688 202 DRSPS 206 (293)
Q Consensus 202 ~~~~~ 206 (293)
...++
T Consensus 81 rggr~ 85 (241)
T KOG0105|consen 81 RGGRS 85 (241)
T ss_pred cCCCc
Confidence 87653
No 89
>smart00361 RRM_1 RNA recognition motif.
Probab=99.29 E-value=1.4e-11 Score=82.60 Aligned_cols=58 Identities=26% Similarity=0.438 Sum_probs=51.6
Q ss_pred HHHHHHHHH----hcCCeeEEE-Eec---C--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEE
Q 022688 20 EYEVEDLFY----KYGRILDIE-LKI---P--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (293)
Q Consensus 20 ~~~l~~~F~----~~G~I~~v~-i~~---~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 77 (293)
+++|.++|. +||.|..|. +.. + +.++|||||+|.+.++|..|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999985 422 2 678999999999999999999999999999999986
No 90
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=2.9e-12 Score=100.72 Aligned_cols=140 Identities=20% Similarity=0.311 Sum_probs=115.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
...+||||+||...++++-|.++|-+-|+|..|.|.. ++..+ ||||.|.++-++.-|++.|||..+.+..|+|++-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 6789999999999999999999999999999999954 34555 99999999999999999999999999999998644
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC
Q 022688 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 161 (293)
.... .-|...++++.+...|+..|.+..+.+..+.+
T Consensus 86 G~sh--------------------------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d 121 (267)
T KOG4454|consen 86 GNSH--------------------------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDND 121 (267)
T ss_pred CCCc--------------------------------------------chhhhhcchhhheeeecccCCCCCcccccccc
Confidence 3200 01455677888888899999998888887766
Q ss_pred C---cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 162 G---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 162 ~---g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
+ .++|+.+.-.-....++....+.+..
T Consensus 122 ~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 122 GRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred CCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 3 48899888877777888877776654
No 91
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.1e-10 Score=102.81 Aligned_cols=173 Identities=23% Similarity=0.366 Sum_probs=116.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEe-cC-----CCCCc---EEEEEECCHHHHHHHHHhhCCCccCCce
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK-IP-----PRPPC---YCFVEFENARDAEDAIRGRDGYNFDGCR 74 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~-~~-----~~~~g---~afV~f~~~~~A~~A~~~l~g~~i~g~~ 74 (293)
.-++.||||+||.+++|++|...|..||.+. |... .. -.++| |+|+.|+++.+++.-+.++.- ....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 3478999999999999999999999999763 2232 11 12456 999999999999888876643 3333
Q ss_pred EEEEEcCCCCCCC--CCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHh-hcC
Q 022688 75 LRVELAHGGSGRG--PSSSD--RRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMR-KAG 149 (293)
Q Consensus 75 l~v~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G 149 (293)
+.+..+....... +..+. ....+.. ....+-.+..||||++||..++.++|..+|+ -||
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~----------------d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG 396 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVL----------------DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG 396 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhh----------------ccCcccCccceEEecCCCCcchHHHHHHHHHHhcC
Confidence 3333332221111 00000 0000000 0123345678999999999999999999999 699
Q ss_pred CeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHh----cCCccCCCcCCCceeEeecC
Q 022688 150 DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRK----LDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 150 ~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~----l~g~~~~~~~~g~~i~v~~~ 201 (293)
.|..+-|..|+.- |-|-|+|.+...-.+||.+ ++...+. .+|.|++.
T Consensus 397 gV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-----KRVEIkPY 451 (520)
T KOG0129|consen 397 GVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-----KRVEIKPY 451 (520)
T ss_pred ceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc-----eeeeecce
Confidence 9999999988432 6899999999998888874 4555544 35555543
No 92
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.3e-11 Score=96.40 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=74.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCc
Q 022688 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (293)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~ 194 (293)
..+....+|.|.||+.++++.+|+++|.+||.|..+.+.+++.+ |||||.|.+.++|.+||..|||.-+. ..
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd----~L 259 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD----NL 259 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc----eE
Confidence 34556789999999999999999999999999999999999887 59999999999999999999999998 88
Q ss_pred eeEeecCCC
Q 022688 195 RITVKRYDR 203 (293)
Q Consensus 195 ~i~v~~~~~ 203 (293)
.++|++++.
T Consensus 260 ILrvEwskP 268 (270)
T KOG0122|consen 260 ILRVEWSKP 268 (270)
T ss_pred EEEEEecCC
Confidence 889988753
No 93
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.26 E-value=3.1e-11 Score=81.03 Aligned_cols=67 Identities=22% Similarity=0.446 Sum_probs=59.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 127 l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
|+|+|||..+++++|.++|+.+|.|..+.+..++. .++|||+|.+.++|..|+..+++..+. |+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~----g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID----GRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC----CEEcC
Confidence 68999999999999999999999999999999865 369999999999999999999999988 77663
No 94
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=5.8e-11 Score=82.38 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=70.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC-cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
+...+..|||.|||..+|.+++.++|.+||.|..+.+=..+.+ |.|||.|++..+|.+|++.|+|..+. ++.+.|
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~----~ryl~v 89 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD----NRYLVV 89 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC----CceEEE
Confidence 3445679999999999999999999999999999998777665 79999999999999999999999998 888877
Q ss_pred ecCC
Q 022688 199 KRYD 202 (293)
Q Consensus 199 ~~~~ 202 (293)
-...
T Consensus 90 lyyq 93 (124)
T KOG0114|consen 90 LYYQ 93 (124)
T ss_pred EecC
Confidence 6543
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.24 E-value=5.7e-11 Score=96.23 Aligned_cols=75 Identities=20% Similarity=0.334 Sum_probs=68.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC-cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
.+.+|+|+||++.+|+++|+++|+.||+|..|.+..+... ++|||+|++++.|..|+. |+|..|. +..|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~----d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIV----DQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeC----CceEEEEeC
Confidence 4579999999999999999999999999999999998654 699999999999999995 9999999 888888876
Q ss_pred C
Q 022688 202 D 202 (293)
Q Consensus 202 ~ 202 (293)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 96
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.2e-11 Score=99.95 Aligned_cols=80 Identities=24% Similarity=0.533 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
-+.|+|||-.||.+.++.||.+.|..||.|++.++.. ++.++.|+||.|.++.+|+.||..|||+.|+=+.|+|++.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 4689999999999999999999999999999999865 5789999999999999999999999999999999999987
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
+++
T Consensus 363 RPk 365 (371)
T KOG0146|consen 363 RPK 365 (371)
T ss_pred Ccc
Confidence 765
No 97
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=7.6e-11 Score=105.46 Aligned_cols=179 Identities=22% Similarity=0.347 Sum_probs=133.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhc-----------C-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----------G-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-----------G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~ 71 (293)
.....++|+++|+.++++.+..+|..- | .|..+.+.. .+.+|||+|.+.++|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~---~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL---EKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc---cccceeEEecCCCchhhhhc-ccchhhC
Confidence 456789999999999999999999754 3 366666643 37899999999999999999 8999999
Q ss_pred CceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCe
Q 022688 72 GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV 151 (293)
Q Consensus 72 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i 151 (293)
|.++++.-....-.-....... .. .+.-...............++|++||..+++.++.++...||++
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~----~~--------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~l 316 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSP----SQ--------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPL 316 (500)
T ss_pred CCCceecccccccCCccchhhh----cc--------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccc
Confidence 9999887544331111100000 00 00000000111222345689999999999999999999999999
Q ss_pred EEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 152 CFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 152 ~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
....+..+... ||||.+|.++.....|+..|||..++ +..+.|..+-
T Consensus 317 k~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg----d~~lvvq~A~ 367 (500)
T KOG0120|consen 317 KAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG----DKKLVVQRAI 367 (500)
T ss_pred hhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc----CceeEeehhh
Confidence 99988888663 69999999999999999999999998 7777666543
No 98
>PLN03213 repressor of silencing 3; Provisional
Probab=99.22 E-value=6.2e-11 Score=103.59 Aligned_cols=76 Identities=18% Similarity=0.337 Sum_probs=70.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCCh--hhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNP--EDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~--~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
.+..|||+||++.+++++|..+|..||.|..+.|++....|||||+|... .++.+|+..|||.... |+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK----GR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK----GGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec----CceeEEee
Confidence 45799999999999999999999999999999999777678999999987 6899999999999988 99999999
Q ss_pred CC
Q 022688 201 YD 202 (293)
Q Consensus 201 ~~ 202 (293)
++
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 86
No 99
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.20 E-value=6.1e-11 Score=108.66 Aligned_cols=76 Identities=28% Similarity=0.518 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
-++|||||+|+..+++.||.++|+.||+|.+|.++. ++++|||.+.+-.+|.+|+.+|+...+.++.|+|.|+..+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc---CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 378999999999999999999999999999999974 4899999999999999999999999999999999999877
No 100
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=1.6e-11 Score=114.11 Aligned_cols=158 Identities=21% Similarity=0.368 Sum_probs=132.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
..++|||++||+..+++.+|+..|..+|.|..|.|..+ +.-..||||.|.+...+-.|...+.+..|....+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46899999999999999999999999999999999654 4445799999999999999999899888866655555432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC
Q 022688 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 161 (293)
. .......+++++|+..+....|...|..||.|..|.+....
T Consensus 450 ~-------------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq- 491 (975)
T KOG0112|consen 450 P-------------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ- 491 (975)
T ss_pred c-------------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC-
Confidence 1 12245689999999999999999999999999988776643
Q ss_pred CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 162 GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 162 ~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
-|++|.|++...|+.|+..|.|..++++ .+.++|..+.
T Consensus 492 -~yayi~yes~~~aq~a~~~~rgap~G~P--~~r~rvdla~ 529 (975)
T KOG0112|consen 492 -PYAYIQYESPPAAQAATHDMRGAPLGGP--PRRLRVDLAS 529 (975)
T ss_pred -cceeeecccCccchhhHHHHhcCcCCCC--Cccccccccc
Confidence 4999999999999999999999999843 3447777665
No 101
>smart00362 RRM_2 RNA recognition motif.
Probab=99.17 E-value=2.4e-10 Score=76.36 Aligned_cols=69 Identities=25% Similarity=0.442 Sum_probs=62.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC--CCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~--~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
+|+|.|||..+++++|.++|.+||.+..+.+..+. ..++|||+|.+.++|..|+..+++..+. +..|.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~----~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG----GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC----CEEEee
Confidence 48999999999999999999999999999888765 3379999999999999999999998887 777665
No 102
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.15 E-value=8e-10 Score=96.86 Aligned_cols=182 Identities=23% Similarity=0.289 Sum_probs=116.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeE-EEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~-v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
...-+|-+.+||+.||++||.++|+-.-.|.. |.+.. .+.+.|-|||+|++++.|+.|+. -|...|+-+-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 35678999999999999999999998854444 33333 35688999999999999999999 6778888888888776
Q ss_pred CCCCCCC-----CCCCCCCCCCCC------------CCC-------------CCCC------------CCCC--------
Q 022688 81 HGGSGRG-----PSSSDRRGGYGG------------GGA-------------GGAG------------GAGA-------- 110 (293)
Q Consensus 81 ~~~~~~~-----~~~~~~~~~~~~------------~~~-------------~~~~------------~~~~-------- 110 (293)
....... .....+++.+.. +.. +..+ .++.
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 4111000 000000000000 000 0000 0000
Q ss_pred --------CCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHH
Q 022688 111 --------GAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAI 179 (293)
Q Consensus 111 --------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~ 179 (293)
.........-...+..++..+||+..++.++..+|+..-.+ .+++...+++ |-|+|+|.+.++|..|+
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhh
Confidence 00000001111222578889999999999999999987555 5666665544 79999999999999998
Q ss_pred HhcCCccCC
Q 022688 180 RKLDDTEFR 188 (293)
Q Consensus 180 ~~l~g~~~~ 188 (293)
. -++..+.
T Consensus 339 s-kd~anm~ 346 (510)
T KOG4211|consen 339 G-KDGANMG 346 (510)
T ss_pred c-cCCcccC
Confidence 7 3444544
No 103
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.12 E-value=1.1e-10 Score=89.48 Aligned_cols=78 Identities=24% Similarity=0.357 Sum_probs=71.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
.....+|||+||+..++++.|.++|-+.|+|+.++++++.-+ |||||+|.+.++|+.|++-||...+. |+.|
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY----grpI 81 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY----GRPI 81 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc----Ccee
Confidence 445679999999999999999999999999999999988543 79999999999999999999998888 9999
Q ss_pred EeecCC
Q 022688 197 TVKRYD 202 (293)
Q Consensus 197 ~v~~~~ 202 (293)
+|..+.
T Consensus 82 rv~kas 87 (203)
T KOG0131|consen 82 RVNKAS 87 (203)
T ss_pred EEEecc
Confidence 998876
No 104
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.08 E-value=4.2e-09 Score=86.45 Aligned_cols=78 Identities=24% Similarity=0.465 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
+..|+|.|||+.+++++|++||..||.++.+.+++ .+.+.|.|=|.|...++|..|++.|+|..++|+.+.+......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 47899999999999999999999999888888865 4788899999999999999999999999999999999887654
No 105
>smart00360 RRM RNA recognition motif.
Probab=99.08 E-value=9.5e-10 Score=73.14 Aligned_cols=66 Identities=23% Similarity=0.439 Sum_probs=59.3
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 129 v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
|.|||..+++++|.++|.+||.|..+.+..+.. .++|||+|.+.++|..|+..+++..+. +..+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~----~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD----GRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC----CcEEEe
Confidence 578999999999999999999999999988765 369999999999999999999998887 777665
No 106
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.06 E-value=6.9e-10 Score=86.87 Aligned_cols=80 Identities=24% Similarity=0.374 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhc-CCeeEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-GRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~I~~v~i---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
.....++|..||.-+-+.+|..+|.+| |.|..+.+ ..||.++|||||+|++++.|.-|-+.||+..+.|+.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345678999999999999999999998 78888888 56899999999999999999999999999999999999998
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6643
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.05 E-value=2e-09 Score=72.20 Aligned_cols=70 Identities=24% Similarity=0.451 Sum_probs=63.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
+|+|.|||..+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|..|+..+++..+. +..+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~----~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG----GRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEe
Confidence 478999999999999999999999999999998764 479999999999999999999999887 7777664
No 108
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.03 E-value=2.2e-09 Score=95.01 Aligned_cols=78 Identities=35% Similarity=0.602 Sum_probs=67.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
...+|||+|||+++++.+|+++|..||.|+...|.. .+....||||+|.+.++++.|+. -+-..|+++.|.|+-..
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecc
Confidence 345699999999999999999999999999988832 24445999999999999999999 56889999999999877
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 54
No 109
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.02 E-value=1.2e-09 Score=69.87 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=50.0
Q ss_pred HHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 141 LKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 141 l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
|.++|++||+|..+.+.... +++|||+|.+.++|..|+..|||..+. |+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~----g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFN----GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEET----TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 67899999999999998776 579999999999999999999999998 899988753
No 110
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=1.5e-09 Score=86.73 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=61.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
-.+|||+||++.+..+.|+..|++||+|+.+.++.|+.+ |||||+|.+.+.|.+|++--+ -.|+ |++.-+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piId----GR~aNcn 86 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIID----GRKANCN 86 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccc----ccccccc
Confidence 358999999999999999999999999999999999876 699999999999999997433 3334 5555555
Q ss_pred cCC
Q 022688 200 RYD 202 (293)
Q Consensus 200 ~~~ 202 (293)
.+-
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 543
No 111
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=5.1e-10 Score=88.22 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=71.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
...+|||++|..++++.-|...|-+||+|..+.++.|-.. |||||+|+..++|..|+..||+.++. |+.|+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~----GrtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF----GRTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc----ceeEEE
Confidence 3469999999999999999999999999999999887443 79999999999999999999999999 999999
Q ss_pred ecCCCCC
Q 022688 199 KRYDRSP 205 (293)
Q Consensus 199 ~~~~~~~ 205 (293)
..+...+
T Consensus 85 N~AkP~k 91 (298)
T KOG0111|consen 85 NLAKPEK 91 (298)
T ss_pred eecCCcc
Confidence 9987433
No 112
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=2.2e-09 Score=90.23 Aligned_cols=76 Identities=28% Similarity=0.507 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHh-hCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRG-RDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~i~g~~l~v~~~~~ 82 (293)
...++|||++|-..+++.+|++.|.+||+|..|.+... +++|||+|.+-+.|+.|..+ +|...|+|..|.|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 34579999999889999999999999999999999643 57999999999999998754 466788999999999887
No 113
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=1.1e-09 Score=97.34 Aligned_cols=71 Identities=31% Similarity=0.466 Sum_probs=65.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 76 (293)
-++.+|+|-|||..+++++|..+|+.||+|..|.. +....+.+||+|.+.-+|++|+++|++..+.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 46889999999999999999999999999999544 445579999999999999999999999999999998
No 114
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.93 E-value=2.3e-09 Score=95.37 Aligned_cols=80 Identities=26% Similarity=0.531 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
-.++|||.+|...+...+|++||++||+|+..+|+. +...+.|+||++.+.++|.+||..|+...|+|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 367999999999999999999999999999999864 34567899999999999999999999999999999999987
Q ss_pred CCC
Q 022688 82 GGS 84 (293)
Q Consensus 82 ~~~ 84 (293)
+.+
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 543
No 115
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=1.5e-10 Score=88.67 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=70.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
..-|||+|||+.+|+-+|..+|++||.|.+|.+++|..+ ||||+.|++..+..-|+..|||..+. |+.|+|+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~----gRtirVD 110 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL----GRTIRVD 110 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec----ceeEEee
Confidence 458999999999999999999999999999999999877 59999999999999999999999999 9999998
Q ss_pred cCC
Q 022688 200 RYD 202 (293)
Q Consensus 200 ~~~ 202 (293)
...
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 754
No 116
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.89 E-value=4.5e-09 Score=93.63 Aligned_cols=82 Identities=26% Similarity=0.368 Sum_probs=75.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
..+||+|+|+++++++|..+|+..|.|..++++.|..+ ||||++|.+.++|..|++.|||.++. |+.++|.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~----gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN----GRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC----CceEEeec
Confidence 79999999999999999999999999999999999876 59999999999999999999999999 99999999
Q ss_pred CCCCCCCCCC
Q 022688 201 YDRSPSRSRS 210 (293)
Q Consensus 201 ~~~~~~r~r~ 210 (293)
+.....+.+.
T Consensus 95 ~~~~~~~~~~ 104 (435)
T KOG0108|consen 95 ASNRKNAERS 104 (435)
T ss_pred ccccchhHHH
Confidence 8866655443
No 117
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.89 E-value=1.5e-08 Score=71.33 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=65.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHh--cCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccC----CceEEE
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYK--YGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRV 77 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~--~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~----g~~l~v 77 (293)
+||+|.|||...|.++|.+++.. .|...-+.++.+ .-+.|||||.|.+++.|....+.++|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999999875 367777777554 467899999999999999999999999885 577888
Q ss_pred EEcCCC
Q 022688 78 ELAHGG 83 (293)
Q Consensus 78 ~~~~~~ 83 (293)
.+|+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887744
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=5.6e-09 Score=87.94 Aligned_cols=79 Identities=24% Similarity=0.311 Sum_probs=73.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCc----EEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT----YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g----~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
..+|...|||..|.+-++.++|.-+|+.||+|..|.++++..+| ||||+|++.+++++|.-+|++..|. .+.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID----DrR 310 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID----DRR 310 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec----cce
Confidence 34677899999999999999999999999999999999998886 9999999999999999999999999 888
Q ss_pred eEeecCC
Q 022688 196 ITVKRYD 202 (293)
Q Consensus 196 i~v~~~~ 202 (293)
|.|++..
T Consensus 311 IHVDFSQ 317 (479)
T KOG0415|consen 311 IHVDFSQ 317 (479)
T ss_pred EEeehhh
Confidence 9888754
No 119
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.84 E-value=1.6e-08 Score=86.12 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=69.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
..+|||+|||..+++++|.++|..||.+..+.+..+... |+|||+|.+.++|..|+..+++..+. |+.|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~----~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE----GRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC----CceeEee
Confidence 589999999999999999999999999999999888532 79999999999999999999999999 9999999
Q ss_pred cCC
Q 022688 200 RYD 202 (293)
Q Consensus 200 ~~~ 202 (293)
...
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 864
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=3.3e-10 Score=105.12 Aligned_cols=132 Identities=23% Similarity=0.278 Sum_probs=111.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
...++||.||++.+.+++|...|..+|.|..+.+. ..+..+|+|||+|..+++|.+||. +...++.|+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~gK-------- 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFGK-------- 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh-hhhhhhhhh--------
Confidence 45678999999999999999999999977766663 356789999999999999999999 554454442
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC
Q 022688 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 161 (293)
..++|.|+|...|.++++.++..+|.+....++....
T Consensus 737 -------------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~ 773 (881)
T KOG0128|consen 737 -------------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA 773 (881)
T ss_pred -------------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhc
Confidence 2688999999999999999999999998887766654
Q ss_pred C---cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 162 G---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 162 ~---g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
+ |.++|.|.+..+|..++..++...+.
T Consensus 774 gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 774 GKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred cccccceeccCCCcchhhhhcccchhhhhh
Confidence 3 79999999999999999888777766
No 121
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.78 E-value=1.6e-08 Score=86.12 Aligned_cols=172 Identities=20% Similarity=0.260 Sum_probs=129.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhhCC-CccCCceEEEEEc
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELA 80 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~---~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~i~g~~l~v~~~ 80 (293)
..+++|++++...+.+.++..++..+|.+....+. ....+++++.|.|+..+.+..|+. +.+ ..+.++.+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 46789999999999999999999999977776662 245678999999999999999999 665 4666666655554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEE-EcCCCCCCCHHHHHHHHhhcCCeEEEEEeeC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI-VRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 159 (293)
........+... .....+..+++ |.+++..++.++|..+|..+|.|..+.+...
T Consensus 166 ~~~~~~~~n~~~-------------------------~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~ 220 (285)
T KOG4210|consen 166 TRRGLRPKNKLS-------------------------RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD 220 (285)
T ss_pred ccccccccchhc-------------------------ccccCccccceeecccccccchHHHhhhccCcCcceeeccCCC
Confidence 433211111000 01111223445 9999999999999999999999999999988
Q ss_pred CCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCCCCC
Q 022688 160 SEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSR 207 (293)
Q Consensus 160 ~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~~r 207 (293)
..+ |+|||.|.....+..++.. +...+. +..+.+.+....+..
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTRSIG----GRPLRLEEDEPRPKS 267 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccCccc----CcccccccCCCCccc
Confidence 776 5999999999999999887 777777 777777777654443
No 122
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.74 E-value=8.1e-08 Score=87.80 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC------CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 78 (293)
.+++|||+||++.++++.|...|..||+|..++|+.. .....++||-|-+-.+|++|++.|+|..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 4688999999999999999999999999999999653 3567899999999999999999999999999999999
Q ss_pred EcCCC
Q 022688 79 LAHGG 83 (293)
Q Consensus 79 ~~~~~ 83 (293)
|++.-
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 98643
No 123
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.74 E-value=2.8e-09 Score=91.68 Aligned_cols=140 Identities=24% Similarity=0.391 Sum_probs=113.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhc--CCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCC-CccCCceEEEEEcCCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELAHGG 83 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~--G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~i~g~~l~v~~~~~~ 83 (293)
+.+||+||.+.++..+|..+|... |--..+.+. .|||||.+.++..|.+|++.++| ..+.|+.+.|.+.-.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 468999999999999999999854 222233333 68999999999999999999998 5678999999877654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEe-eCCCC
Q 022688 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS-RDSEG 162 (293)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~-~~~~~ 162 (293)
. .....+-|.|+|+...++.|..+...||.+..|... .+..+
T Consensus 77 k-------------------------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et 119 (584)
T KOG2193|consen 77 K-------------------------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET 119 (584)
T ss_pred H-------------------------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH
Confidence 1 122367899999999999999999999999887653 33333
Q ss_pred cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 163 TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 163 g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
...-|+|...+.+..|+.+++|..+.
T Consensus 120 avvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 120 AVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 45567889999999999999999987
No 124
>smart00361 RRM_1 RNA recognition motif.
Probab=98.70 E-value=7.9e-08 Score=64.33 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=47.6
Q ss_pred HHHHHHHHh----hcCCeEEEE-EeeCC------CCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 138 WQDLKDHMR----KAGDVCFAE-VSRDS------EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 138 ~~~l~~~f~----~~G~i~~~~-~~~~~------~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
+++|.++|. .||.|..+. +..++ ..|+|||+|.+.++|.+|+..|||..+. |+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~----gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD----GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEe
Confidence 567888888 999999885 54443 2379999999999999999999999998 888765
No 125
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.69 E-value=2.3e-08 Score=85.48 Aligned_cols=80 Identities=25% Similarity=0.508 Sum_probs=72.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
+..|||++||.+++++++++.|.+||.|..+.++.+ ..+++|+||.|.+++.+++++. +.-..|+|+.+.|..|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 568999999999999999999999999999888664 5788999999999999999998 788999999999999987
Q ss_pred CCCC
Q 022688 83 GSGR 86 (293)
Q Consensus 83 ~~~~ 86 (293)
....
T Consensus 176 k~~~ 179 (311)
T KOG4205|consen 176 KEVM 179 (311)
T ss_pred hhhc
Confidence 7443
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.69 E-value=1.5e-07 Score=84.14 Aligned_cols=79 Identities=27% Similarity=0.358 Sum_probs=71.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC-c---EEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-T---YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g---~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
...+.+|||.+|...+...+|+.+|++||+|+-++++.+... | |+||++.+.++|.++|..||.+++. |+.|
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH----GrmI 477 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH----GRMI 477 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc----ceee
Confidence 345779999999999999999999999999999999988644 3 9999999999999999999999999 9999
Q ss_pred EeecCCC
Q 022688 197 TVKRYDR 203 (293)
Q Consensus 197 ~v~~~~~ 203 (293)
.|..++.
T Consensus 478 SVEkaKN 484 (940)
T KOG4661|consen 478 SVEKAKN 484 (940)
T ss_pred eeeeccc
Confidence 9998773
No 127
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.61 E-value=5.9e-08 Score=79.91 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
-+...|||+|+.+.+|.+++...|+.||.|..+.|..+ +++++||||+|.+.+.+..|+. |||..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 46789999999999999999999999999987777543 5789999999999999999999 9999999999999988
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 755
No 128
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.58 E-value=3.8e-07 Score=61.26 Aligned_cols=70 Identities=23% Similarity=0.384 Sum_probs=48.9
Q ss_pred CeEEEcCCCCCCcHHHH----HHHHHhcC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 7 RTIYVGNLPSDIREYEV----EDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l----~~~F~~~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
..|+|.|||.+.+...| ++|+..|| +|..| . .+.|+|.|.+++.|.+|.+.|+|..+.|+.|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46999999999888775 45666666 77766 2 4789999999999999999999999999999999985
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 44
No 129
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.56 E-value=3.8e-07 Score=72.86 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=67.6
Q ss_pred cceEEEcCCCCCCCHHHHHH----HHhhcCCeEEEEEeeCCC-CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 124 EYRVIVRGLPSSASWQDLKD----HMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~----~f~~~G~i~~~~~~~~~~-~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
..+|||.||+..+..++|+. +|++||.|..|....... .|-|||.|.+.+.|..|+..|+|..+. |..+++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy----gK~mri 84 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY----GKPMRI 84 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc----Cchhhe
Confidence 34999999999999999888 999999999988775543 489999999999999999999999999 888888
Q ss_pred ecCCC
Q 022688 199 KRYDR 203 (293)
Q Consensus 199 ~~~~~ 203 (293)
.++..
T Consensus 85 qyA~s 89 (221)
T KOG4206|consen 85 QYAKS 89 (221)
T ss_pred ecccC
Confidence 88864
No 130
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.53 E-value=2.4e-07 Score=85.68 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=73.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
...+||||++|+..+++.+|.++|+.||.|..|.++... ++|||.+....+|.+|+.+|.+..+. +..|++.++
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~----~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVA----DKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhccccc----ceeeEEeee
Confidence 356799999999999999999999999999999988876 79999999999999999999999888 899999998
Q ss_pred CCCCCCC
Q 022688 202 DRSPSRS 208 (293)
Q Consensus 202 ~~~~~r~ 208 (293)
.+...++
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 7665544
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.52 E-value=7.8e-07 Score=81.37 Aligned_cols=190 Identities=10% Similarity=-0.063 Sum_probs=124.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CC-CCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PR-PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~-~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
+.+.+-+.+.++++...+++++|... .|..+.|... +. ..|.++|+|..+.++++|++ -|...+-.+.++|..+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 34566678889999999999999754 4556555332 33 37899999999999999999 67777778888887665
Q ss_pred CCCCCCCCCCC-CC--CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEE
Q 022688 82 GGSGRGPSSSD-RR--GGYGGGGAGGAGG-AGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEV 156 (293)
Q Consensus 82 ~~~~~~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~ 156 (293)
...--...... .. .......+...++ .+.-........+...+.+|||..||..++..++.+.|.....|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 33111110000 00 0000000000000 0001112223455566789999999999999999999998777766 555
Q ss_pred eeCCC---CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 157 SRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 157 ~~~~~---~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
...+. .+.|||.|...+++..|..--+...++ -+.|+|+.
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G----~r~irv~s 510 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPG----HRIIRVDS 510 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccC----ceEEEeec
Confidence 44433 369999999999999888766666665 67777765
No 132
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.50 E-value=2.5e-06 Score=73.02 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=109.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeE---EEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD---IELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~---v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
+.+..|-.++||...++.+|..+|.-.-...- +-+...+.-.|.|.|.|.++|.-+.|++ -+...+.++.|.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 56778889999999999999999986521111 1112234456899999999999999999 6778888899998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhh---cC----CeEE
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRK---AG----DVCF 153 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~---~G----~i~~ 153 (293)
....- -... +++..+.....+......|-..+||+++++.++.++|.+ .+ .|.+
T Consensus 137 ~ge~f------------~~ia-------gg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLF 197 (508)
T KOG1365|consen 137 TGEEF------------LKIA-------GGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLF 197 (508)
T ss_pred Cchhh------------eEec-------CCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEE
Confidence 53310 0000 000001111222233457888999999999999999963 22 3445
Q ss_pred EEEeeCCCCcEEEEEeCChhhHHHHHHh
Q 022688 154 AEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (293)
Q Consensus 154 ~~~~~~~~~g~~fv~f~~~~~A~~a~~~ 181 (293)
++....+.+|-|||.|+..++|+.|+.+
T Consensus 198 V~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 198 VTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EECCCCCcccceEEEecCHHHHHHHHHH
Confidence 5555556668999999999999999974
No 133
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.43 E-value=2.8e-07 Score=74.56 Aligned_cols=159 Identities=16% Similarity=0.251 Sum_probs=111.0
Q ss_pred EEcCCCCCCcHHH-H--HHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCC
Q 022688 10 YVGNLPSDIREYE-V--EDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (293)
Q Consensus 10 ~V~nLp~~~t~~~-l--~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~ 84 (293)
+++++-..+..+- | ...|+.+-......+.. .+.-.+++|+.|.....-.++...-++++++-..|++.-...-.
T Consensus 100 ~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswe 179 (290)
T KOG0226|consen 100 FQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWE 179 (290)
T ss_pred cccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccC
Confidence 3444444444333 2 55666665444444433 24456899999998877777777777777766665554322220
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC--
Q 022688 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (293)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-- 162 (293)
.+ ....-......||.+.|..+++.+.|...|.+|-.....+++++..+
T Consensus 180 --dP---------------------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgK 230 (290)
T KOG0226|consen 180 --DP---------------------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGK 230 (290)
T ss_pred --Cc---------------------------ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccc
Confidence 00 00111224579999999999999999999999998888888888655
Q ss_pred --cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 163 --g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
||+||.|.++.++..|+.+|+|..++ .+.|.++..
T Consensus 231 SkgygfVSf~~pad~~rAmrem~gkyVg----srpiklRkS 267 (290)
T KOG0226|consen 231 SKGYGFVSFRDPADYVRAMREMNGKYVG----SRPIKLRKS 267 (290)
T ss_pred cccceeeeecCHHHHHHHHHhhcccccc----cchhHhhhh
Confidence 69999999999999999999999998 666666543
No 134
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.39 E-value=3.7e-07 Score=73.88 Aligned_cols=76 Identities=18% Similarity=0.326 Sum_probs=67.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
..-.||.+.|..+++.+.|-..|.+|-.....++ ..+++++||+||.|.+++++..|+.+|+|..++.++|.+..+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 4567999999999999999999999976655555 457899999999999999999999999999999999887644
No 135
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.39 E-value=2e-06 Score=68.46 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=67.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC-----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.-.+|||.+||.++...+|..+|..|-.-+.+.+.....+ -+||+.|.+...|+.|++.|||..++ +..+..++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFD-pE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFD-PETGSTLH 111 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeec-cccCceeE
Confidence 3579999999999999999999999865555554443322 39999999999999999999999997 34477888
Q ss_pred eecCCCCCCCC
Q 022688 198 VKRYDRSPSRS 208 (293)
Q Consensus 198 v~~~~~~~~r~ 208 (293)
++.++....+.
T Consensus 112 iElAKSNtK~k 122 (284)
T KOG1457|consen 112 IELAKSNTKRK 122 (284)
T ss_pred eeehhcCcccc
Confidence 88887544433
No 136
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.36 E-value=1.4e-06 Score=73.57 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=65.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC-ccCCCcCCCceeEeec
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD-TEFRNPWARGRITVKR 200 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g-~~~~~~~~g~~i~v~~ 200 (293)
..-.+|||++|...+++.+|+++|.+||+|..+.+.... ++|||+|.+.+.|+.|..+.-. ..+. |..|.+.+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI~----G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVIN----GFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeeec----ceEEEEEe
Confidence 445699999999999999999999999999999988876 6999999999999998877544 4444 88888887
Q ss_pred CCC
Q 022688 201 YDR 203 (293)
Q Consensus 201 ~~~ 203 (293)
...
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 765
No 137
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.30 E-value=6.2e-07 Score=72.21 Aligned_cols=70 Identities=26% Similarity=0.445 Sum_probs=63.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
..+||++||+.+.+.+|+.+|..||.+..+.+.. ||+||+|++..+|..|+..+|+..+. +..+.++++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~----~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELC----GERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceec----ceeeeeeccc
Confidence 3689999999999999999999999999888766 69999999999999999999999998 5556677665
No 138
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.29 E-value=2e-06 Score=62.06 Aligned_cols=71 Identities=13% Similarity=0.285 Sum_probs=45.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhC-----CCccCCceEEEEEc
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD-----GYNFDGCRLRVELA 80 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~i~g~~l~v~~~ 80 (293)
+.|+|.+++..++-++|+++|+.||.|..|.+... -..|||-|.+++.|+.|+..+. +..|.+..+.+..-
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 57899999999999999999999999999988643 3489999999999999998763 34667777766653
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.24 E-value=4.5e-06 Score=68.77 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=67.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
...|+|.|||+.+.+++|+++|..||.+..+.+..++.+ |.|-|.|...++|..|++.++|..+. |..+.+..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld----G~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD----GRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC----CceeeeEE
Confidence 368999999999999999999999999999999988877 79999999999999999999998888 77766655
Q ss_pred CC
Q 022688 201 YD 202 (293)
Q Consensus 201 ~~ 202 (293)
..
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 43
No 140
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.23 E-value=2.7e-06 Score=72.96 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=51.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC-------cEEEEEeCChhhHHHHHHhcCCccC
Q 022688 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEF 187 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-------g~~fv~f~~~~~A~~a~~~l~g~~~ 187 (293)
.|.|.||.+.++.+++..+|...|+|..+.++..... ..|||.|.+...+..|....|-..+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv 77 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV 77 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee
Confidence 8999999999999999999999999999988875433 3899999999888877774444333
No 141
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.17 E-value=1e-05 Score=68.51 Aligned_cols=77 Identities=27% Similarity=0.447 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEE--------EEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCc
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~ 190 (293)
.-+..|||.|||.++|.+++.++|+++|-|.. |++..+..+ |-|.|.|-..+++.-|++.|++..+.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r-- 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR-- 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc--
Confidence 34567999999999999999999999997743 788888766 68999999999999999999999999
Q ss_pred CCCceeEeecCC
Q 022688 191 WARGRITVKRYD 202 (293)
Q Consensus 191 ~~g~~i~v~~~~ 202 (293)
|..|+|..+.
T Consensus 210 --g~~~rVerAk 219 (382)
T KOG1548|consen 210 --GKKLRVERAK 219 (382)
T ss_pred --CcEEEEehhh
Confidence 9999999876
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.12 E-value=1.8e-06 Score=68.46 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=61.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC--cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
...+|||+|+...++++-|.++|-+.|+|..+.|..+.+. .||||.|++.....-|+..|||..+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence 4579999999999999999999999999999999888765 49999999999999999999998886
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.12 E-value=3.2e-05 Score=54.57 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=60.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhc--CCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
.+|.|.|+|...++++|.+++... |....+.++.|..+ |||||.|.+++.|..-...++|.....-.......+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 489999999999999999999774 67777777777543 799999999999999999999998863222333334
Q ss_pred ecC
Q 022688 199 KRY 201 (293)
Q Consensus 199 ~~~ 201 (293)
.+|
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 443
No 144
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.12 E-value=1.2e-05 Score=63.45 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=62.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhc-CCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKA-GDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
.....++|..+|..+.+.++..+|.++ |.+..+.+.++..+ |||||+|++.+.|..|.+.||+..+. +.-+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~----e~lL 122 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM----EHLL 122 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh----hhee
Confidence 344588999999999999999999998 67777888677655 59999999999999999999999998 5555
Q ss_pred Eee
Q 022688 197 TVK 199 (293)
Q Consensus 197 ~v~ 199 (293)
.+.
T Consensus 123 ~c~ 125 (214)
T KOG4208|consen 123 ECH 125 (214)
T ss_pred eeE
Confidence 444
No 145
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.08 E-value=4.4e-06 Score=71.19 Aligned_cols=81 Identities=28% Similarity=0.385 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeE--------EEE---ecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~--------v~i---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g 72 (293)
....+|||-+||..+++++|.++|.++|.|.. |+| +.|+.+++-|.|.|.++..|+.|+.-+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 35679999999999999999999999997753 333 3467899999999999999999999999999999
Q ss_pred ceEEEEEcCCCC
Q 022688 73 CRLRVELAHGGS 84 (293)
Q Consensus 73 ~~l~v~~~~~~~ 84 (293)
..|+|.++....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998887554
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.07 E-value=3.4e-05 Score=52.03 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=48.1
Q ss_pred ceEEEcCCCCCCCHHH----HHHHHhhcC-CeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 125 YRVIVRGLPSSASWQD----LKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~----l~~~f~~~G-~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
..|+|.|||.+..... |++++..+| .|..+. ++.|.|.|.+.+.|..|++.|+|..+- |.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVf----G~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVF----GNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SS----SS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccc----cceEEEE
Confidence 4789999999888765 667777886 676552 368999999999999999999999999 9999998
Q ss_pred cCCC
Q 022688 200 RYDR 203 (293)
Q Consensus 200 ~~~~ 203 (293)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8753
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.07 E-value=1e-05 Score=74.41 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=67.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC-------cEEEEEeCChhhHHHHHHhcCCccCCCcCCC
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-------g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g 193 (293)
.+.+.++||+||++.++++.|...|..||+|..++++....- .++||.|.+..+|+.|++.|+|..+. +
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~----~ 246 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM----E 246 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee----e
Confidence 445679999999999999999999999999999999876432 59999999999999999999999987 6
Q ss_pred ceeEeecCC
Q 022688 194 GRITVKRYD 202 (293)
Q Consensus 194 ~~i~v~~~~ 202 (293)
..+++-+.+
T Consensus 247 ~e~K~gWgk 255 (877)
T KOG0151|consen 247 YEMKLGWGK 255 (877)
T ss_pred eeeeecccc
Confidence 666666553
No 148
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.04 E-value=6.8e-05 Score=66.89 Aligned_cols=75 Identities=19% Similarity=0.340 Sum_probs=61.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC----CCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~----~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
...|||.|||.+++..+|+++|..||.|....|.... ...||||+|++.+.+..|+.+- -..++ ++++.|+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig----~~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG----GRKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC----CeeEEEE
Confidence 3469999999999999999999999999887665532 2359999999999999999855 44445 8888888
Q ss_pred cCCC
Q 022688 200 RYDR 203 (293)
Q Consensus 200 ~~~~ 203 (293)
+.+.
T Consensus 363 ek~~ 366 (419)
T KOG0116|consen 363 EKRP 366 (419)
T ss_pred eccc
Confidence 7653
No 149
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.03 E-value=1.7e-05 Score=49.54 Aligned_cols=53 Identities=28% Similarity=0.563 Sum_probs=43.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHH
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~ 62 (293)
++.|-|.+.+++..+.-| ..|..||+|..+.+. ....++||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEEVL-EHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHHHH-HHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 467899999988775555 488899999998886 23569999999999999985
No 150
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.02 E-value=2.9e-06 Score=69.10 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=53.4
Q ss_pred HHHHHHHH-hcCCeeEEEEe--cCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 21 YEVEDLFY-KYGRILDIELK--IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 21 ~~l~~~F~-~~G~I~~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
++|...|+ +||+|.++.|- ...+-.|.+||.|..+++|++|++.||+.+|.|++|.++++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 44555555 89999999773 23466899999999999999999999999999999999998755
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.98 E-value=5.2e-05 Score=62.61 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=67.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.....+||+|+...++.+++...|+.||.|..+.+..+... ||+||+|.+.+.++.|+. |++..+. +..|.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~----~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP----GPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc----cccce
Confidence 45569999999999999999999999999988888877655 599999999999999999 9999999 88887
Q ss_pred eecCC
Q 022688 198 VKRYD 202 (293)
Q Consensus 198 v~~~~ 202 (293)
+....
T Consensus 174 vt~~r 178 (231)
T KOG4209|consen 174 VTLKR 178 (231)
T ss_pred eeeee
Confidence 77655
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.96 E-value=1.8e-05 Score=57.11 Aligned_cols=59 Identities=29% Similarity=0.517 Sum_probs=40.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCc
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~ 185 (293)
+.|+|.+++..++.++|+++|+.||.|.+|.+.... ..|||.|.+.+.|+.|+.++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~--~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD--TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT---SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC--CEEEEEECCcchHHHHHHHHHhc
Confidence 578999999999999999999999999999988754 48999999999999999876555
No 153
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=1.2e-05 Score=72.27 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=60.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+..+|+|.|||..++.++|..+|+.||+|..+..-.... +.+||+|.++-+|+.|+++|++.++. |..|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~-~~~~v~FyDvR~A~~Alk~l~~~~~~----~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR-GIVFVEFYDVRDAERALKALNRREIA----GKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC-ceEEEEEeehHhHHHHHHHHHHHHhh----hhhhc
Confidence 4556999999999999999999999999998865544433 69999999999999999999999998 55554
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.95 E-value=2.6e-05 Score=65.81 Aligned_cols=75 Identities=24% Similarity=0.443 Sum_probs=61.2
Q ss_pred CeEEEcCCCCCCcHHHH------HHHHHhcCCeeEEEEec-C---CCCCc--EEEEEECCHHHHHHHHHhhCCCccCCce
Q 022688 7 RTIYVGNLPSDIREYEV------EDLFYKYGRILDIELKI-P---PRPPC--YCFVEFENARDAEDAIRGRDGYNFDGCR 74 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l------~~~F~~~G~I~~v~i~~-~---~~~~g--~afV~f~~~~~A~~A~~~l~g~~i~g~~ 74 (293)
+-|||-+||+.+..|++ .++|.+||+|..|.|.. + +...+ -.||.|.+.++|..||...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999998777763 57899999999999843 2 11112 2499999999999999999999999999
Q ss_pred EEEEEcC
Q 022688 75 LRVELAH 81 (293)
Q Consensus 75 l~v~~~~ 81 (293)
|++.|..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9998865
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.93 E-value=6.5e-05 Score=53.41 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=54.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEe----------cCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK----------IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~----------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~ 73 (293)
..++.|.|-+.|+. ....|.+.|++||.|.+..-. .......+..|.|.++.+|.+||. .||..|.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 34678999999998 667788999999999887510 112346789999999999999999 899999886
Q ss_pred e-EEEEEcC
Q 022688 74 R-LRVELAH 81 (293)
Q Consensus 74 ~-l~v~~~~ 81 (293)
. +-|.+++
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 4 4466653
No 156
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.86 E-value=2e-05 Score=67.33 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=71.3
Q ss_pred CCCCCCeEE-EcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEE
Q 022688 2 SGRFSRTIY-VGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (293)
Q Consensus 2 ~~~~~~~l~-V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 77 (293)
+..++.++| |+||+..++.++|...|..+|.|..+.+.. ++..+++|||.|.+...+..|+.. +...+.+.++.+
T Consensus 180 ~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 180 SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL 258 (285)
T ss_pred ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence 345666777 999999999999999999999999999943 467899999999999999999996 889999999999
Q ss_pred EEcCCC
Q 022688 78 ELAHGG 83 (293)
Q Consensus 78 ~~~~~~ 83 (293)
.+....
T Consensus 259 ~~~~~~ 264 (285)
T KOG4210|consen 259 EEDEPR 264 (285)
T ss_pred ccCCCC
Confidence 987755
No 157
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.81 E-value=2.6e-05 Score=70.53 Aligned_cols=77 Identities=12% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHH-hcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCcc---CCceEEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLRVEL 79 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i---~g~~l~v~~ 79 (293)
..++.|||.||-.-+|.-+|+.|+. .+|.|.+++|-. -+..|||.|.+.++|.....+|||..| +++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk---IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK---IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHH---hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5789999999999999999999999 567788886622 156899999999999999999999888 578999999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
....
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 8643
No 158
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=6.8e-05 Score=67.51 Aligned_cols=75 Identities=27% Similarity=0.425 Sum_probs=59.7
Q ss_pred CCCeEEEcCCCCCCc------HHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCC-ceE
Q 022688 5 FSRTIYVGNLPSDIR------EYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDG-CRL 75 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t------~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g-~~l 75 (293)
-...|+|.|+|.--. ..-|..+|+++|+|..+.++.+ +..+||.|++|.+..+|+.|++.|||..|+- ..+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 456899999986422 2236778999999999999653 6689999999999999999999999988864 455
Q ss_pred EEEE
Q 022688 76 RVEL 79 (293)
Q Consensus 76 ~v~~ 79 (293)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 5544
No 159
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.74 E-value=0.00011 Score=67.72 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=64.4
Q ss_pred CCCC-eEEEcCCCCCCcHHHHHHHHHhcCCe-eEEEE--ecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 4 RFSR-TIYVGNLPSDIREYEVEDLFYKYGRI-LDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 4 ~~~~-~l~V~nLp~~~t~~~l~~~F~~~G~I-~~v~i--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
++.+ .|-+.|+|++++-+||.++|..|-.+ .+|.+ ..++.+.|-|.|-|+++++|..|+..|++..|..+.|.+..
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4455 88999999999999999999999533 23444 33578899999999999999999999999999999988753
No 160
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.72 E-value=4e-05 Score=62.43 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=59.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC-----------CCCC----cEEEEEECCHHHHHHHHHhhCCCc
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----------PRPP----CYCFVEFENARDAEDAIRGRDGYN 69 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~-----------~~~~----g~afV~f~~~~~A~~A~~~l~g~~ 69 (293)
.+-.||+.+||+.+...-|+++|++||.|-.|++... +.+. .-|.|+|.+...|......||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999999332 1222 245699999999999999999999
Q ss_pred cCCce
Q 022688 70 FDGCR 74 (293)
Q Consensus 70 i~g~~ 74 (293)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99876
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.68 E-value=0.00013 Score=63.66 Aligned_cols=73 Identities=27% Similarity=0.230 Sum_probs=58.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCC--------C--------CCcEEEEEECCHHHHHHHHHhhCCC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--------R--------PPCYCFVEFENARDAEDAIRGRDGY 68 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~--------~--------~~g~afV~f~~~~~A~~A~~~l~g~ 68 (293)
++++|.+.|||.+-.-+.|.+||..+|.|+.|.|...+ . .+-+|+|+|.+.+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 68999999999999999999999999999999994431 1 2468999999999999999977654
Q ss_pred ccCCceEEE
Q 022688 69 NFDGCRLRV 77 (293)
Q Consensus 69 ~i~g~~l~v 77 (293)
...-.-|.|
T Consensus 310 ~~wr~glkv 318 (484)
T KOG1855|consen 310 QNWRMGLKV 318 (484)
T ss_pred hhhhhcchh
Confidence 443333333
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.63 E-value=0.0002 Score=58.46 Aligned_cols=103 Identities=25% Similarity=0.254 Sum_probs=83.7
Q ss_pred HHHHHHHhhCCCccCCceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCC
Q 022688 57 DAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA 136 (293)
Q Consensus 57 ~A~~A~~~l~g~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 136 (293)
-|..|...|++....|+.|.|.|+... .|+|.||..-+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a------------------------------------------~l~V~nl~~~~ 43 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA------------------------------------------ELYVVNLMQGA 43 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc------------------------------------------eEEEEecchhh
Confidence 467777789999999999999998755 89999999999
Q ss_pred CHHHHHHHHhhcCCeEEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 137 SWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 137 ~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
..+.+.+.|..||+|...-+..|.. ++-++|.|...-.|.+|+..+...-+.....++..-|.+.
T Consensus 44 sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 44 SNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred hhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 9999999999999998765555533 3689999999999999999886655554455666555543
No 163
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.63 E-value=0.00011 Score=69.30 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEE--ecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
...|+|.|+|+..|.++|+.++..+|.+..+.+ ...+.++|.|||.|.++.+|..++...+...+..+.+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 356899999999999999999999999999887 44688999999999999999999999999999888888887665
No 164
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00026 Score=63.29 Aligned_cols=61 Identities=25% Similarity=0.363 Sum_probs=55.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHH-hcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHh
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRG 64 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~ 64 (293)
++.+|||||+||.-++.++|..+|. .||.|..+-|-.| +-++|-|=|.|.+..+=.+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 7899999999999999999999999 7999999999665 35789999999999999999983
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.41 E-value=0.00078 Score=50.86 Aligned_cols=56 Identities=23% Similarity=0.403 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 22 EVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 22 ~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
+|.+.|..||+|.=+++.. +..+|+|.+-++|.+|+. |+|..++|+.|+|....+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~-----~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG-----DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET-----TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeC-----CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 6777889999998888773 468999999999999999 9999999999999986644
No 166
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.40 E-value=0.00059 Score=56.79 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCeeEEEEecCC----CCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 20 EYEVEDLFYKYGRILDIELKIPP----RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 20 ~~~l~~~F~~~G~I~~v~i~~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
++++.+...+||+|..|.|+... .-.--.||+|...++|.+|+--|||..|+|+.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 44678889999999999885532 112357999999999999999999999999999988754
No 167
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.38 E-value=0.00055 Score=56.06 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=47.2
Q ss_pred HHHHHHHh-hcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 139 QDLKDHMR-KAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 139 ~~l~~~f~-~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
+++...|. +||.|+.+.+..+... |-+||.|...++|+.|+..||+..+. |+.|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~----G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN----GRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc----CCcceeeec
Confidence 45555555 8999988877665432 68999999999999999999999999 888766653
No 168
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.36 E-value=0.00086 Score=57.51 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=63.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEE--------EEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
.....+|||.+||..+++.+|.++|.++|.|.. +++.+++.+ +-|.|.|++...|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445669999999999999999999999997743 444444433 69999999999999999999999998
Q ss_pred CcCCCceeEeecCC
Q 022688 189 NPWARGRITVKRYD 202 (293)
Q Consensus 189 ~~~~g~~i~v~~~~ 202 (293)
+..|.|..+.
T Consensus 143 ----gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 ----GNTIKVSLAE 152 (351)
T ss_pred ----CCCchhhhhh
Confidence 6666666554
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.25 E-value=0.00028 Score=59.98 Aligned_cols=76 Identities=13% Similarity=0.119 Sum_probs=63.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcC--CeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
...++|||||-.-+|++||.+.+...| .|.++++.. .++++|||+|...+...+++.++.|....|+|+.-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 345799999999999999999988777 455555533 478999999999999999999999999999998766654
Q ss_pred c
Q 022688 80 A 80 (293)
Q Consensus 80 ~ 80 (293)
.
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 3
No 170
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.21 E-value=0.0011 Score=41.37 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=41.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHH
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAI 179 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~ 179 (293)
..|.|.|.+....+. +...|..||+|..+.+... ....+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~--~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES--TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC--CcEEEEEECCHHHHHhhC
Confidence 357788888776654 5558889999999887732 359999999999999985
No 171
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.17 E-value=0.0023 Score=43.22 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=41.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (293)
....+|+ +|..+...||.++|+.||.|.--.|.. .-|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d-----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND-----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEECT-----TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC-----CcEEEEeecHHHHHHHHHHhc
Confidence 3556675 999999999999999999985555543 479999999999999998775
No 172
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.10 E-value=0.00083 Score=63.95 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCC--ceEEEEEc
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELA 80 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~ 80 (293)
+.+++.+||++|.+-+....|...|..||.|..|.+-.. .-||+|.|++...|+.|++.|-|..|+| +.|.|.++
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg---q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG---QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC---CcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 357889999999999999999999999999999888543 5699999999999999999999999986 77999998
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 529 ~~~ 531 (975)
T KOG0112|consen 529 SPP 531 (975)
T ss_pred cCC
Confidence 765
No 173
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.04 E-value=0.0021 Score=54.59 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=62.3
Q ss_pred CcceEEEcCCCCCCCHHH------HHHHHhhcCCeEEEEEeeCCCC-----c--EEEEEeCChhhHHHHHHhcCCccCCC
Q 022688 123 SEYRVIVRGLPSSASWQD------LKDHMRKAGDVCFAEVSRDSEG-----T--YGVVDYTNPEDMKYAIRKLDDTEFRN 189 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~------l~~~f~~~G~i~~~~~~~~~~~-----g--~~fv~f~~~~~A~~a~~~l~g~~~~~ 189 (293)
....+||-+|++.+..++ -.++|.+||.|..+-+.+.... + -.||+|.+.++|..||.+.+|..++
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D- 191 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD- 191 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc-
Confidence 345789999999988776 3689999999998877765422 2 3599999999999999999999999
Q ss_pred cCCCceeEeecCC
Q 022688 190 PWARGRITVKRYD 202 (293)
Q Consensus 190 ~~~g~~i~v~~~~ 202 (293)
|+.|+..+..
T Consensus 192 ---Gr~lkatYGT 201 (480)
T COG5175 192 ---GRVLKATYGT 201 (480)
T ss_pred ---CceEeeecCc
Confidence 8888877654
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.89 E-value=0.0014 Score=57.40 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=58.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeC---CCC--------------cEEEEEeCChhhHHHHHHh
Q 022688 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD---SEG--------------TYGVVDYTNPEDMKYAIRK 181 (293)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~---~~~--------------g~~fv~f~~~~~A~~a~~~ 181 (293)
.+..+..+|.+.|||.+-..+.|.++|..+|.|..|.|.+. +.. -+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34456789999999999999999999999999999999887 211 2799999999999999998
Q ss_pred cCCccC
Q 022688 182 LDDTEF 187 (293)
Q Consensus 182 l~g~~~ 187 (293)
|+....
T Consensus 306 ~~~e~~ 311 (484)
T KOG1855|consen 306 LNPEQN 311 (484)
T ss_pred hchhhh
Confidence 865543
No 175
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.82 E-value=0.0077 Score=45.00 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=56.7
Q ss_pred CCCeEEEcCCCCCCc-HHH---HHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 5 FSRTIYVGNLPSDIR-EYE---VEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t-~~~---l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
|-.||.|.-|..++. .+| +...++.||+|.+|.+.. +.-|.|.|.+..+|-.|+.+++. ...|..+++.|-
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 345788888777743 333 455677899999997753 56899999999999999998865 677899999886
Q ss_pred CC
Q 022688 81 HG 82 (293)
Q Consensus 81 ~~ 82 (293)
..
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 53
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.0044 Score=56.28 Aligned_cols=65 Identities=28% Similarity=0.403 Sum_probs=54.7
Q ss_pred cceEEEcCCCCCCCH------HHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 124 EYRVIVRGLPSSASW------QDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~------~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
...|+|.|+|.--.. ..|..+|+++|++..+.++.+..+ ||.|++|++..+|..|++.|||..+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 458889998843322 357789999999999999877665 69999999999999999999999998
No 177
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.72 E-value=0.001 Score=54.41 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=57.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---------c-------EEEEEeCChhhHHHHHHhcCCccCC
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---------T-------YGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---------g-------~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
-.||++++|+.+...-|+++|..||.|-.|.+...... + -|+|+|.+...|......||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 48999999999999999999999999999888765432 1 6899999999999999999999998
No 178
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.70 E-value=0.017 Score=41.88 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=48.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcC-CeeEEEEecCCC-CCcEEEEEECCHHHHHHHHHhhCCCccCC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPR-PPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~v~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~i~g 72 (293)
+..+.+...|..++.++|..+.+.+- .|..++|..++. ++=.+.++|.++++|+.....+||+.|..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444444445566666766666554 677888888875 45567789999999999999999998854
No 179
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.55 E-value=0.0027 Score=50.39 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=51.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHh-cCCe---eEEEEecC-----CCCCcEEEEEECCHHHHHHHHHhhCCCccCC--
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRI---LDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFDG-- 72 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~I---~~v~i~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g-- 72 (293)
.....|.|++||+.+|++++.+.++. ++.- ..+.-... .....-|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 56779999999999999999998876 6655 33331121 1223579999999999999999999977743
Q ss_pred ---ceEEEEEcCCC
Q 022688 73 ---CRLRVELAHGG 83 (293)
Q Consensus 73 ---~~l~v~~~~~~ 83 (293)
..-.|++|...
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 34567776653
No 180
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.52 E-value=0.0093 Score=42.45 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=45.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEE-E----------eeCCCCcEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAE-V----------SRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~-~----------~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
..-|.|.|.|+. ....+.++|++||+|.... + .....++...|+|+++.+|.+||. .||..+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~ 79 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS 79 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc
Confidence 456889999988 5677888999999997664 1 122233589999999999999998 7888887
No 181
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.52 E-value=0.0032 Score=51.60 Aligned_cols=75 Identities=27% Similarity=0.324 Sum_probs=61.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCcc----CCceEEEEEc
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNF----DGCRLRVELA 80 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i----~g~~l~v~~~ 80 (293)
..|||.||+.-++.+.|.+-|..||+|....++.+ +++.+-++|+|...-.|.+|+..+.-.-| .+.+.-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 67999999999999999999999999988777654 56788999999999999999998844333 4566666554
Q ss_pred C
Q 022688 81 H 81 (293)
Q Consensus 81 ~ 81 (293)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 182
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.48 E-value=0.028 Score=49.88 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=58.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcC-CeeEEEEecCCCCC-cEEEEEECCHHHHHHHHHhhCCCccCC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPP-CYCFVEFENARDAEDAIRGRDGYNFDG 72 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~v~i~~~~~~~-g~afV~f~~~~~A~~A~~~l~g~~i~g 72 (293)
+++.|+|-.+|..+|..||..|...+- .|.+|++..++.+- =.+.|.|.+.++|...++.+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 378999999999999999999998654 68899998887544 457799999999999999999998864
No 183
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.34 E-value=0.035 Score=37.27 Aligned_cols=66 Identities=21% Similarity=0.379 Sum_probs=40.6
Q ss_pred eEEEcCCC--CCCcHHHHHHHHHhcC-----CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 8 TIYVGNLP--SDIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 8 ~l~V~nLp--~~~t~~~l~~~F~~~G-----~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
++|| |+- ..+++.+|..++...+ .|-.|.|. ..|+||+-.. +.|..++..|++..+.|+.|.|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4566 553 3489999999998764 55677776 4599999887 4899999999999999999999864
No 184
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.31 E-value=0.018 Score=48.44 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=56.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCce-EEEEEcCCC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-LRVELAHGG 83 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~-l~v~~~~~~ 83 (293)
...|.|-++|+..+ .-|..+|++||.|+..... ..-.+-+|.|.+..+|++||. .||+.|+|.. |-|..+..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 45677888887543 4678899999999886544 445799999999999999999 8999998754 556665544
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.22 E-value=0.041 Score=35.29 Aligned_cols=53 Identities=19% Similarity=0.375 Sum_probs=42.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhc----CCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhh
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKY----GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~----G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (293)
..|+|.++ .+++.++|+.+|..| ++ ..|...-+ .-|=|.|.+.+.|.+||..|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~-~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGP-FRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCC-ceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 47899998 559999999999999 53 45555433 25889999999999999864
No 186
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=96.20 E-value=0.008 Score=51.16 Aligned_cols=20 Identities=20% Similarity=0.110 Sum_probs=12.1
Q ss_pred CCcEEEEEECCHHHHHHHHH
Q 022688 44 PPCYCFVEFENARDAEDAIR 63 (293)
Q Consensus 44 ~~g~afV~f~~~~~A~~A~~ 63 (293)
.+.-.||-|.-+.-|..++.
T Consensus 172 lRT~v~vry~pe~iACaciy 191 (367)
T KOG0835|consen 172 LRTDVFVRYSPESIACACIY 191 (367)
T ss_pred cccceeeecCHHHHHHHHHH
Confidence 45566777776655555554
No 187
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.10 E-value=0.00081 Score=62.01 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=64.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.+.-+|||+||...+..+-+..+...+|-|..+.... |+|..|....-+..|+..++-..++|..+.+....
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 3567999999999999999999999999998886653 99999999999999999999999999998887643
No 188
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.04 E-value=0.024 Score=47.53 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=50.2
Q ss_pred HHHHHHHhhcCCeEEEEEeeCCCC-----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 139 QDLKDHMRKAGDVCFAEVSRDSEG-----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 139 ~~l~~~f~~~G~i~~~~~~~~~~~-----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
+++.+.+.+||.|..|-|...++. --.||+|+..++|.+|+--|||..|+ |+.+...+.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG----Gr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG----GRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec----ceeeeheec
Confidence 468889999999999888777543 27899999999999999999999999 888776654
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.91 E-value=0.0035 Score=53.54 Aligned_cols=77 Identities=30% Similarity=0.534 Sum_probs=60.6
Q ss_pred CeEEEcCCCCCCcHHHHH---HHHHhcCCeeEEEEecCC------CCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEE
Q 022688 7 RTIYVGNLPSDIREYEVE---DLFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~---~~F~~~G~I~~v~i~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 77 (293)
+-+||-+|+..+..+.+. +.|.+||.|..|.+..+. ....-++|+|...++|..||...+|+.++|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888998886666554 378999999999885432 12234899999999999999999999999999888
Q ss_pred EEcCCC
Q 022688 78 ELAHGG 83 (293)
Q Consensus 78 ~~~~~~ 83 (293)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776644
No 190
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.82 E-value=0.037 Score=44.12 Aligned_cols=62 Identities=27% Similarity=0.288 Sum_probs=46.3
Q ss_pred cHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhC--CCccCCceEEEEEcCCC
Q 022688 19 REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVELAHGG 83 (293)
Q Consensus 19 t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v~~~~~~ 83 (293)
..+.|+++|..|+.+..+.+... -+=..|.|.+.+.|..|...|+ +..+.|..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999888877633 4568999999999999999999 99999999999998544
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.72 E-value=0.017 Score=52.45 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=54.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHh--cCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCC--CccCCceEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYK--YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRV 77 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~--~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~v 77 (293)
..-|.|.|+.||..+..|+|+.||.. |-++++|.+-.. ..=||+|++..||+.|++.|.. +.|-|++|..
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 34578899999999999999999984 778999988532 2359999999999999986643 4455655543
No 192
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.72 E-value=0.0015 Score=57.18 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=66.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
++.+.|.|+|+..-++.|..|...||.|..|....+....-..-|+|...+.+..|+..++|..+....++|.|....
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 567899999999999999999999999999988554433344457899999999999999999999999999886543
No 193
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.66 E-value=0.0072 Score=53.78 Aligned_cols=76 Identities=13% Similarity=0.213 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCCCC-cHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPSDI-REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~-t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
...+.|-+..+|+.+ |-++|...|.+||+|..|.+-.. ..-|.|+|.+..+|-.|.. .++..|+++.|+|.|...
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 345667777777774 66789999999999999988543 4579999999999989988 899999999999999887
Q ss_pred C
Q 022688 83 G 83 (293)
Q Consensus 83 ~ 83 (293)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 5
No 194
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.65 E-value=0.059 Score=40.86 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=44.5
Q ss_pred HHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 140 DLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 140 ~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
+|.+.|..||.+.-+++..+ .-+|+|.+-+.|.+|+. ++|.++. |..+.++..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~----g~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVN----GRTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEET----TEEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEEC----CEEEEEEeC
Confidence 68888999999998888775 57999999999999998 9999998 888777653
No 195
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=95.32 E-value=0.025 Score=43.58 Aligned_cols=10 Identities=40% Similarity=0.345 Sum_probs=4.1
Q ss_pred CCCCCCcccc
Q 022688 258 RSVSPDKASA 267 (293)
Q Consensus 258 rsrs~~rs~~ 267 (293)
+|+|+.+.+.
T Consensus 101 rSRS~~R~s~ 110 (182)
T PF06495_consen 101 RSRSRHRRSR 110 (182)
T ss_pred hccCccccCC
Confidence 3444444333
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.19 E-value=0.17 Score=32.44 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=43.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhc---CCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhc
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKA---GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~---G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l 182 (293)
..|+|.|+.. ++.++|+.+|..| .....+.-+.|. .|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 3789999864 7778999999998 134456666665 7999999999999999765
No 197
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.16 E-value=0.035 Score=47.41 Aligned_cols=13 Identities=0% Similarity=0.184 Sum_probs=7.2
Q ss_pred CCCHHHHHHHHhh
Q 022688 135 SASWQDLKDHMRK 147 (293)
Q Consensus 135 ~~~~~~l~~~f~~ 147 (293)
.+++++|.+++-.
T Consensus 212 d~~k~eid~ic~~ 224 (367)
T KOG0835|consen 212 DTTKREIDEICYR 224 (367)
T ss_pred CCcHHHHHHHHHH
Confidence 4566666555543
No 198
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.99 E-value=0.13 Score=34.98 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=40.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC
Q 022688 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g 184 (293)
.+|--.+|......||.++|+.||.|.-. -+.+. .|||.....+.|..++..+.-
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~Vs-Wi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVS-WINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEE-EECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEE-EEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 44444599999999999999999998643 33443 899999999999998887754
No 199
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.74 E-value=0.14 Score=46.74 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=48.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhh--cCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhc
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRK--AGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l 182 (293)
.+.|++.-+|+.+..++++.+|.. +-+++.|.+..+. -=||+|++..+|+.|.+.|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHH
Confidence 378889999999999999999986 5688899888876 4689999999999998654
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.41 E-value=0.18 Score=32.88 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=45.1
Q ss_pred CCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEE
Q 022688 17 DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (293)
Q Consensus 17 ~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 77 (293)
.++-++|+..+..|+ ...|.... .|| ||.|.+.++|++++...+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 488999999999995 56665543 344 89999999999999999999888777654
No 201
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.55 E-value=0.97 Score=32.82 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=48.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEEeeCCCCc--EEEEEeCChhhHHHHHHhcCCccCC
Q 022688 126 RVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g--~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
.+.+...|..++.++|..+.+.+- .|..+.+.++...+ .+.++|.+.+.|..-...+||+.+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 444555566666677776666654 67778888886553 7889999999999999999999997
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.50 E-value=0.073 Score=50.97 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=60.0
Q ss_pred EcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCcc--CCceEEEEEcCCCCCCC
Q 022688 11 VGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF--DGCRLRVELAHGGSGRG 87 (293)
Q Consensus 11 V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~v~~~~~~~~~~ 87 (293)
+.|.+-..+-.-|..+|..||.|.+++...+ -..|.|+|...+.|..|+.+++|+.+ -|-+.+|.+++.-+...
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 3344445677778899999999999998654 46899999999999999999999776 58889999988664433
No 203
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=0.4 Score=44.21 Aligned_cols=79 Identities=23% Similarity=0.419 Sum_probs=62.7
Q ss_pred CCCCCeEEEcCCCCC-CcHHHHHHHHHhc----CCeeEEEEecC--C----------CC---------------------
Q 022688 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKY----GRILDIELKIP--P----------RP--------------------- 44 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~I~~v~i~~~--~----------~~--------------------- 44 (293)
+.+++.|-|.|+..+ +..++|.-+|..| |.|..|.|..+ | .+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 467899999999988 8999999999866 58999999431 0 01
Q ss_pred --------C---------cEEEEEECCHHHHHHHHHhhCCCccCC--ceEEEEEcC
Q 022688 45 --------P---------CYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAH 81 (293)
Q Consensus 45 --------~---------g~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~~ 81 (293)
+ =||.|+|.+.+.|...+..|+|..|.. ..|.+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 0 289999999999999999999999964 555555544
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.24 E-value=0.18 Score=34.83 Aligned_cols=81 Identities=21% Similarity=0.371 Sum_probs=50.8
Q ss_pred EEEEECCHHHHHHHHHhhCC--CccCCceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 022688 48 CFVEFENARDAEDAIRGRDG--YNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125 (293)
Q Consensus 48 afV~f~~~~~A~~A~~~l~g--~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (293)
|+|+|.+++-|+..+. +.. ..+++..+.|............- .-....+..
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~--------------------------qv~~~vs~r 53 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKF--------------------------QVFSGVSKR 53 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEE--------------------------EEEEcccCC
Confidence 6899999999999887 433 44466666665543221111000 001224567
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC
Q 022688 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~ 162 (293)
+|.|.|+|....+++|++..+ +++.+..++
T Consensus 54 tVlvsgip~~l~ee~l~D~Le-------IhFqK~snG 83 (88)
T PF07292_consen 54 TVLVSGIPDVLDEEELRDKLE-------IHFQKPSNG 83 (88)
T ss_pred EEEEeCCCCCCChhhheeeEE-------EEEecCCCC
Confidence 999999999999999886654 555555444
No 205
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.66 E-value=0.12 Score=47.52 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=59.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhh-cCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRK-AGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
......|+|.||-.-+|.-+|+.++.. .|.|....|.+-+ -.|||.|.+.++|.....+|||..... ..+..+.+.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK--ShCyV~yss~eEA~atr~AlhnV~WP~-sNPK~L~ad 517 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK--SHCYVSYSSVEEAAATREALHNVQWPP-SNPKHLIAD 517 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh--cceeEecccHHHHHHHHHHHhccccCC-CCCceeEee
Confidence 345679999999999999999999995 4556555333333 379999999999999999999988751 124555555
Q ss_pred cCC
Q 022688 200 RYD 202 (293)
Q Consensus 200 ~~~ 202 (293)
+..
T Consensus 518 f~~ 520 (718)
T KOG2416|consen 518 FVR 520 (718)
T ss_pred ecc
Confidence 543
No 206
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.11 E-value=0.47 Score=42.69 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=54.9
Q ss_pred ceEEEcCCCCCC-CHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 125 YRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 125 ~~l~v~nl~~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
+.+-+.-.+..+ +.++|...|.+||.|..|.+-... --|.|+|.+..+|-+|.. .++..|. ++.|+|.+-.-
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~~-s~~avln----nr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAYA-SHGAVLN----NRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchhc-cccceec----CceeEEEEecC
Confidence 344444445443 667999999999999999887763 368999999999987776 7888888 78888877553
No 207
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.10 E-value=0.2 Score=39.78 Aligned_cols=66 Identities=17% Similarity=0.336 Sum_probs=46.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhh-cCCe---EEEEEeeCCCC------cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRK-AGDV---CFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~-~G~i---~~~~~~~~~~~------g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
....|.|.+||+.+|++++.+.+.. +++. .++........ .-|||.|.+.+++..-...++|..+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 3458999999999999999998887 6665 33332222111 28999999999999999999998775
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.95 E-value=0.36 Score=45.23 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 113 GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 113 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
+..+...+..+..++||+|+...+..+-+..+...+|.|..+.... |||+.|..+..+..|+..++-..++
T Consensus 29 p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 29 PIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCC
Confidence 3344455666778999999999999999999999999998887766 9999999999999999988877775
No 209
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.67 E-value=1.2 Score=39.95 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=58.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEEeeCCCCc--EEEEEeCChhhHHHHHHhcCCccCC
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g--~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
+..|+|-.+|..++..||-.++..+- .|..+.++++..++ ...|.|.+.++|..-...+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 67899999999999999999999875 67889999876553 7899999999999999999999997
No 210
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.22 E-value=0.65 Score=34.98 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=46.7
Q ss_pred CCcceEEEcCCCCCCC----HHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcc
Q 022688 122 HSEYRVIVRGLPSSAS----WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 186 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~ 186 (293)
++-.+|.|.-|..++. ...+.+.++.||+|..+.+.-.. .|.|.|.+...|..|+.+++...
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCCC
Confidence 4556888877665542 23455666789999998876544 89999999999999999987743
No 211
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.60 E-value=1.4 Score=35.12 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=44.3
Q ss_pred CHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcC--CccCCCcCCCceeEeecCC
Q 022688 137 SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 137 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~--g~~~~~~~~g~~i~v~~~~ 202 (293)
..+.|+++|..++.+..+.+...- +-..|.|.+.+.|..|...|+ +..+. |..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~~----g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSFN----GKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEET----TEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccccC----CCceEEEEcc
Confidence 457899999999988777666654 478999999999999999999 88888 7778877764
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.11 E-value=1.4 Score=37.47 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=50.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
.=|.|.++|+... .-|..+|.+||.|...... .++++-+|.|.+..+|.+||. .+|+.|++ ...|-|+.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g---~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDG---DVMIGVKP 266 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeecc---ceEEeeee
Confidence 3456666665443 4577899999999765444 555799999999999999998 78888872 33445555
No 213
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=88.67 E-value=0.77 Score=39.70 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=53.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcC--CeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
...++||+||-+-+|++||.+.....| .+..+++..+... |||+|...+.....+.++.|-.+.+.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH 150 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH 150 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec
Confidence 346899999999999999999998877 5566666665433 69999999988888888888777776
No 214
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.25 E-value=0.21 Score=46.46 Aligned_cols=18 Identities=6% Similarity=-0.198 Sum_probs=7.1
Q ss_pred CCCCcccccccceeeehh
Q 022688 260 VSPDKASAFWKWLILITD 277 (293)
Q Consensus 260 rs~~rs~~~~~~~~~~~~ 277 (293)
|++.+|.+-++.-+++.+
T Consensus 780 r~R~sSrd~H~~~~~Rrs 797 (878)
T KOG1847|consen 780 RHRDSSRDEHHHHRHRRS 797 (878)
T ss_pred cccccccCchhhhhhccc
Confidence 333344444433333333
No 215
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.74 E-value=0.4 Score=46.21 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=58.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 127 l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
..+.|.+-..+-.-|..+|..||.|..+...++- ..|.|+|...+.|..|++.++|+++- ..|...+|.+++
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~--N~alvs~~s~~sai~a~dAl~gkevs--~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL--NMALVSFSSVESAILALDALQGKEVS--VTGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc--cchhhhhHHHHHHHHhhhhhcCCccc--ccCCceeEEecc
Confidence 3344455566677899999999999999888776 48999999999999999999999986 236667777776
No 216
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=86.96 E-value=3.2 Score=28.47 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=44.9
Q ss_pred eEEEcCCCCCCcHHHHHHHHHh-cC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhh
Q 022688 8 TIYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~-~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (293)
+-|+-.+++.++..+|++.++. || +|..|.........--|||.+....+|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 4555578899999999999987 66 7888877555445568999999998888876544
No 217
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=85.24 E-value=1.1 Score=35.22 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=55.7
Q ss_pred CCCeEEEcCCCCCC-----cHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCc-eEEEE
Q 022688 5 FSRTIYVGNLPSDI-----REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRVE 78 (293)
Q Consensus 5 ~~~~l~V~nLp~~~-----t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~-~l~v~ 78 (293)
-.+++.+.+|+..+ ......++|.+|-+...+.+.. +.+..-|.|.+++.|..|...+++..|.|+ .++..
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr---sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR---SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH---hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 34567788887663 2233556777776665555542 245677899999999999999999999888 89998
Q ss_pred EcCCC
Q 022688 79 LAHGG 83 (293)
Q Consensus 79 ~~~~~ 83 (293)
++...
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 88755
No 218
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=84.79 E-value=1.4 Score=33.84 Aligned_cols=120 Identities=18% Similarity=0.146 Sum_probs=75.2
Q ss_pred EEEcCCC--CCCcHHHHHHHHHh-cCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCCC
Q 022688 9 IYVGNLP--SDIREYEVEDLFYK-YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSG 85 (293)
Q Consensus 9 l~V~nLp--~~~t~~~l~~~F~~-~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~~ 85 (293)
..|+.+. ...+-..|.+.+.+ .+....+.+..- ..++..++|.+++++..++. .....++|..|.++...+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccc
Confidence 3444442 34667777776665 233323344221 25789999999999999998 555667787777776553311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 86 RGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
... ........=|.|.|||.. .+++-+..+.+.+|.+..+......
T Consensus 95 ~~~-----------------------------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 95 PSE-----------------------------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred ccc-----------------------------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 000 000011234667899966 5778899999999999888766544
No 219
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=84.32 E-value=0.46 Score=40.94 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=51.3
Q ss_pred ceEEEcCCCCCCCHHHH---HHHHhhcCCeEEEEEeeCCC--C-----cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 125 YRVIVRGLPSSASWQDL---KDHMRKAGDVCFAEVSRDSE--G-----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l---~~~f~~~G~i~~~~~~~~~~--~-----g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
..+||.+|+..+..+.+ .+.|.+||.|..+.+..+.. . --++|+|+..++|..||...+|..+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d 151 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD 151 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh
Confidence 46788888877766654 35788899999988887662 1 16899999999999999999998887
No 220
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=84.31 E-value=5.9 Score=26.70 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=43.9
Q ss_pred eEEEcCCCCCCcHHHHHHHHHh-cC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhh
Q 022688 8 TIYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~-~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (293)
.-|+-.+++.++..+|++.++. || +|..|.........--|||.+...+.|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 4566678999999999999987 66 6777777544444567999999888887755433
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=83.75 E-value=1.2 Score=32.64 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=29.6
Q ss_pred eEEEcCCCCC---------CcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHH-HHHHHHH
Q 022688 8 TIYVGNLPSD---------IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENAR-DAEDAIR 63 (293)
Q Consensus 8 ~l~V~nLp~~---------~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~-~A~~A~~ 63 (293)
++.|.|+|.. ++.++|.+.|+.|..++-..+.......++++|+|...- --..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4567788654 366789999999987754444444456899999997543 3334444
No 222
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.56 E-value=4.6 Score=26.29 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 134 SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 134 ~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
..++.++++..+..|+-. .+..+. +| -||.|.+..+|+++....+|..+.
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~-tG-fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDR-TG-FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecC-CE-EEEEECChHHHHHHHHhcCCCEEE
Confidence 467788999999998632 222333 23 479999999999999999998875
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=82.92 E-value=3 Score=35.17 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=36.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCH
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA 55 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~ 55 (293)
.+-|+|+|||.++...||+..+.+.|-+ -+.|...| +.+-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKG-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeeec-CCcceeEecCCc
Confidence 3569999999999999999999988632 33333333 367899999654
No 224
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=82.16 E-value=0.55 Score=45.18 Aligned_cols=6 Identities=17% Similarity=0.290 Sum_probs=2.3
Q ss_pred EEEEEE
Q 022688 47 YCFVEF 52 (293)
Q Consensus 47 ~afV~f 52 (293)
|+.+..
T Consensus 61 y~~t~~ 66 (1194)
T KOG4246|consen 61 YGSTSL 66 (1194)
T ss_pred ccccch
Confidence 333333
No 225
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=81.44 E-value=1.5 Score=36.75 Aligned_cols=67 Identities=18% Similarity=0.357 Sum_probs=48.3
Q ss_pred CCCCeEEEcCCCCCC------------cHHHHHHHHHhcCCeeEEEEec--------CCC-----CCcEE---------E
Q 022688 4 RFSRTIYVGNLPSDI------------REYEVEDLFYKYGRILDIELKI--------PPR-----PPCYC---------F 49 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~------------t~~~l~~~F~~~G~I~~v~i~~--------~~~-----~~g~a---------f 49 (293)
.-..|||+.+||..+ +++-|...|..||.|..|.|+. ++. ..||+ |
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 445789999999653 6778999999999999998843 222 22343 4
Q ss_pred EEECCHHHHHHHHHhhCCCcc
Q 022688 50 VEFENARDAEDAIRGRDGYNF 70 (293)
Q Consensus 50 V~f~~~~~A~~A~~~l~g~~i 70 (293)
|+|-....-..|+..|-|+.+
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 667777777778888877665
No 226
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=80.45 E-value=4 Score=34.69 Aligned_cols=169 Identities=11% Similarity=0.101 Sum_probs=97.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCC----------CCCcEEEEEECCHHHHHHHHH----hhCC--Cc
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP----------RPPCYCFVEFENARDAEDAIR----GRDG--YN 69 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~----------~~~g~afV~f~~~~~A~~A~~----~l~g--~~ 69 (293)
++.|.+.||..+++--.+..-|.+||+|++|++.... ....-..+.|-+.+.|..... .|+. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5778889999999999999999999999999996532 334678899999988876542 2322 45
Q ss_pred cCCceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCcceEEEcCCCCCCCHHHHHHHH---
Q 022688 70 FDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGR-FGISRHSEYRVIVRGLPSSASWQDLKDHM--- 145 (293)
Q Consensus 70 i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~v~nl~~~~~~~~l~~~f--- 145 (293)
+....|.+.|..-.-.......+....+.. .....-. .-.....++.|.|.--..-..++-+.+.+
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~----------~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL 164 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSD----------YLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFL 164 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhh----------HHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhh
Confidence 677888888765210000000000000000 0000000 01122334566665332222333233222
Q ss_pred hhcC----CeEEEEEeeCCCC------cEEEEEeCChhhHHHHHHhcCC
Q 022688 146 RKAG----DVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDD 184 (293)
Q Consensus 146 ~~~G----~i~~~~~~~~~~~------g~~fv~f~~~~~A~~a~~~l~g 184 (293)
..-+ -++.+.++..... .||.+.|-+..-|.+.++.+.-
T Consensus 165 ~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 165 KNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred ccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 2223 2455666544322 4999999999999999887663
No 227
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=78.22 E-value=17 Score=34.28 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=28.6
Q ss_pred CCCcceEEEcCCC-CCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 121 RHSEYRVIVRGLP-SSASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 121 ~~~~~~l~v~nl~-~~~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
......++|.+++ .+++..-.-+.+.+.|++..|.+.+..
T Consensus 58 QenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 58 QENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR 98 (1027)
T ss_pred ccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence 3445688888888 455666666777889998887776654
No 228
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=75.51 E-value=3.3 Score=36.53 Aligned_cols=66 Identities=21% Similarity=0.348 Sum_probs=49.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec------CCCCCcEEEEEECCHHHHHHHHHhhCCCcc
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI------PPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~i 70 (293)
.-..|.|.+||+.+++++|.+....|-.=.+..... .....+.|||.|..+++.......++|..|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 346788999999999999999888775322222222 123357899999999999999998888666
No 229
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=70.37 E-value=28 Score=22.99 Aligned_cols=59 Identities=12% Similarity=0.255 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHhhcC-----CeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 134 SSASWQDLKDHMRKAG-----DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 134 ~~~~~~~l~~~f~~~G-----~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
..++..+|..++...+ .|-.+.+.. .|+||+-.. +.|..++..|++..+. |+.+.++.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~----~~S~vev~~-~~a~~v~~~l~~~~~~----gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD----NFSFVEVPE-EVAEKVLEALNGKKIK----GKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S----S-EEEEE-T-T-HHHHHHHHTT--SS----S----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee----eEEEEEECH-HHHHHHHHHhcCCCCC----CeeEEEEEC
Confidence 5667788888888764 344566655 378887654 4788899999999998 888887653
No 230
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=70.31 E-value=20 Score=27.36 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=39.9
Q ss_pred eEEEcCCCCCCcHHHHHHHHHh-cC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 022688 8 TIYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~-~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 63 (293)
+-|+-.++..++..+|.+.++. |+ .|..|.........--|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4455568889999999999987 55 56666665443334579999988777665444
No 231
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=69.60 E-value=12 Score=23.88 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCeeEEEE
Q 022688 21 YEVEDLFYKYGRILDIEL 38 (293)
Q Consensus 21 ~~l~~~F~~~G~I~~v~i 38 (293)
++|+++|+.+|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999987777
No 232
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=69.59 E-value=33 Score=23.51 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=44.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeEEEEEeeCCCC-cEEEEEeCChhhHHHHHHhc
Q 022688 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~-g~~fv~f~~~~~A~~a~~~l 182 (293)
+.|+.-++..++..+|++.++. || +|..+.....+.+ .-|||.+..-..|.+...++
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 4566667899999999999988 66 6777776665544 48999999999888876654
No 233
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.45 E-value=13 Score=33.16 Aligned_cols=57 Identities=12% Similarity=0.290 Sum_probs=45.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 63 (293)
+-.+.|-|.++|...-.+||...|+.|+. ..+.|+.-. ...||-.|.+...|..||.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD--dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD--DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee--cceeEEeecchHHHHHHhh
Confidence 34578899999999999999999999974 344443211 2479999999999999998
No 234
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=66.43 E-value=0.84 Score=41.96 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=52.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCce
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~ 74 (293)
.+|+||+.|+++.++-++|..++..+--+..+.+... .....++.|.|.-.-....|..+||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 4688999999999999999999999876666666322 223467789998777777777777776664433
No 235
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=65.85 E-value=27 Score=31.24 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=59.1
Q ss_pred CCCCCeEEEcCCCCC-CcHHHHHHHHHhc----CCeeEEEEecC-------------CC---------------------
Q 022688 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKY----GRILDIELKIP-------------PR--------------------- 43 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~I~~v~i~~~-------------~~--------------------- 43 (293)
+.++..|-|-||..+ +...+|..+|+.| |+|..|.|..+ |-
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 578899999999987 8889999999865 57777777221 10
Q ss_pred ---------------CCc-------------------EEEEEECCHHHHHHHHHhhCCCccCC--ceEEEEEcC
Q 022688 44 ---------------PPC-------------------YCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAH 81 (293)
Q Consensus 44 ---------------~~g-------------------~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~~ 81 (293)
-.| ||.|++.+.+.+...+..++|..+.. ..+.+.|..
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 011 78999999999999999999988864 555555543
No 236
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=65.34 E-value=39 Score=22.73 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=43.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeEEEEEeeCCCC-cEEEEEeCChhhHHHHHHhc
Q 022688 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~-g~~fv~f~~~~~A~~a~~~l 182 (293)
.-|+..++..++..+|+..++. || +|..+....-+.+ .-|||.+..-..|.....++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 4566778899999999999988 56 6677666555543 48999999988888776554
No 237
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=65.15 E-value=13 Score=31.62 Aligned_cols=11 Identities=18% Similarity=0.456 Sum_probs=4.8
Q ss_pred CccCCceEEEE
Q 022688 68 YNFDGCRLRVE 78 (293)
Q Consensus 68 ~~i~g~~l~v~ 78 (293)
..++-+.++|.
T Consensus 76 k~ldpkkmQiN 86 (354)
T KOG2146|consen 76 KNLDPKKMQIN 86 (354)
T ss_pred cCCCchheeee
Confidence 33444444444
No 238
>PF14893 PNMA: PNMA
Probab=64.52 E-value=9 Score=33.67 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=35.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHh-cCCeeEEEE----ecCCCCCcEEEEEECCH
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIEL----KIPPRPPCYCFVEFENA 55 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~I~~v~i----~~~~~~~g~afV~f~~~ 55 (293)
=++.+.|.|.+||.++++++|++.+.. +-+.-...+ .....+...|+|+|...
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 367789999999999999999998763 212222222 11223355788888763
No 239
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=64.36 E-value=34 Score=21.74 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=31.4
Q ss_pred cHHHHHHHHHhcC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHh
Q 022688 19 REYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRG 64 (293)
Q Consensus 19 t~~~l~~~F~~~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 64 (293)
.=.+|.++|.+.| .|.++.+..... +++.-+.+.+.+.|.+++..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHHH
Confidence 4457888888877 788887754433 46666677777788877773
No 240
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=60.40 E-value=56 Score=22.98 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=34.6
Q ss_pred eEEEcCCCCCCcHHHHHHHHHhc--------CCeeEEEE--------ecCCCCCc-EEEEEECCHHHHHHHHHh
Q 022688 8 TIYVGNLPSDIREYEVEDLFYKY--------GRILDIEL--------KIPPRPPC-YCFVEFENARDAEDAIRG 64 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~--------G~I~~v~i--------~~~~~~~g-~afV~f~~~~~A~~A~~~ 64 (293)
++|| |.++++++++..+...+ |.|..+.- .......| |.++.|.-..++...++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 4444 56788888877665443 46666554 11233445 678889877777777763
No 241
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=59.60 E-value=29 Score=23.94 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=35.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEF 52 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f 52 (293)
+...-|||+|++..+-+.-...+.+..++=.-+-+..+....||+|-.+
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEe
Confidence 4566799999999888877777777665544444455556789999877
No 242
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=55.22 E-value=55 Score=23.19 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=39.0
Q ss_pred CCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhC
Q 022688 16 SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (293)
Q Consensus 16 ~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (293)
.+-++++|..+...-|.|.+|.+..+.-..-.|.+...+..+++..++.|+
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~ 57 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLE 57 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHh
Confidence 445678888888877899999996654435567788999999999999875
No 243
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.09 E-value=90 Score=29.52 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=54.5
Q ss_pred CCcceEEEcCCCC-CCCHHHHHHHHhhc----CCeEEEEEeeC--------------C-------------C--------
Q 022688 122 HSEYRVIVRGLPS-SASWQDLKDHMRKA----GDVCFAEVSRD--------------S-------------E-------- 161 (293)
Q Consensus 122 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~----G~i~~~~~~~~--------------~-------------~-------- 161 (293)
..+..|-|.|+.+ .+...+|.-+|..| |.|..|.|... + .
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 4567899999995 56888999998876 58888877631 1 0
Q ss_pred ---C-------------cEEEEEeCChhhHHHHHHhcCCccCCC
Q 022688 162 ---G-------------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (293)
Q Consensus 162 ---~-------------g~~fv~f~~~~~A~~a~~~l~g~~~~~ 189 (293)
. .||.|+|.+++.|......++|.++..
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 0 289999999999999999999999984
No 244
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=52.41 E-value=31 Score=22.65 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=41.4
Q ss_pred HHHHHHHHhcC-CeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 21 YEVEDLFYKYG-RILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 21 ~~l~~~F~~~G-~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
++|.+-|..+| +|..+.-+.. ..+...-||+.....+... .|+=..++|+.|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 57889999998 6777766432 3456778888877655444 344567899999998654
No 245
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=52.20 E-value=51 Score=19.94 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=30.2
Q ss_pred HHHHHHHHhcC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHH
Q 022688 21 YEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (293)
Q Consensus 21 ~~l~~~F~~~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~ 62 (293)
.+|.++|.+.| .|.++.+.......+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45667777776 7888877554445677778888988887765
No 246
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=52.16 E-value=13 Score=30.73 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=29.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i 38 (293)
-...+||+-|||..+|++-|..+.+++|-+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 45678999999999999999999999996655444
No 247
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=52.09 E-value=4.6 Score=35.28 Aligned_cols=49 Identities=16% Similarity=-0.012 Sum_probs=39.6
Q ss_pred cHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCC
Q 022688 19 REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (293)
Q Consensus 19 t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 68 (293)
+...|.+++.+.|.|..-.+..+ -+-|.+||-.-.+++++++++.|.+.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rt-FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRT-FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHH-hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 35788899999998877666544 23789999999999999999988754
No 248
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=50.33 E-value=23 Score=27.94 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHhc-CCeeEEEEecC--C--CCCcEEEEEECCHHHHHHHHH
Q 022688 18 IREYEVEDLFYKY-GRILDIELKIP--P--RPPCYCFVEFENARDAEDAIR 63 (293)
Q Consensus 18 ~t~~~l~~~F~~~-G~I~~v~i~~~--~--~~~g~afV~f~~~~~A~~A~~ 63 (293)
.|+++|..+...- |++..|.+... + ..+|-.||+|...++|...++
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 4555555554433 68888888432 2 356889999999999998877
No 249
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.41 E-value=43 Score=30.01 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=44.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCC-eEEEEEeeCCCCcEEEEEeCChhhHHHHHHh
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~ 181 (293)
...|-|.++|.....+||...|+.|+. =..|+-+.+. .+|..|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 357889999999999999999999973 3345555554 799999999999999874
No 250
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=47.83 E-value=52 Score=21.50 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=41.7
Q ss_pred HHHHHHHHhcC-CeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 21 YEVEDLFYKYG-RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 21 ~~l~~~F~~~G-~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
++|.+-|...| +|..+.-+. +..+...-||+.+...+...++ +=..+++..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCC
Confidence 57888888888 677665543 3456678899988776644443 34678899999987653
No 251
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=47.44 E-value=58 Score=27.80 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=36.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChh
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPE 173 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~ 173 (293)
..-|+++||+.++...||+..+.+.+.+- +.+.....-+.||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCcc
Confidence 45699999999999999999999887442 33444444468999997653
No 252
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=46.61 E-value=44 Score=29.13 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=23.7
Q ss_pred EEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 48 CFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 48 afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
|||.|+++.+|+.|.+.+.... +..+.|+.|..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999544332 344566655433
No 253
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=45.73 E-value=1e+02 Score=29.91 Aligned_cols=67 Identities=9% Similarity=0.084 Sum_probs=50.6
Q ss_pred eEEEcCCC--CCCcHHHHHHHHHhcCCee-----EEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 8 TIYVGNLP--SDIREYEVEDLFYKYGRIL-----DIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 8 ~l~V~nLp--~~~t~~~l~~~F~~~G~I~-----~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+|| |+- ..+++.+|..++..-+.|. .|.|. ..|.||+... +.|...+..|++..+.|+.|.|+.+
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcCh-hhHHHHHHHhccccccCCceEEEEC
Confidence 3555 563 3489999998887665443 44554 4589999876 4688889999999999999999987
Q ss_pred C
Q 022688 81 H 81 (293)
Q Consensus 81 ~ 81 (293)
.
T Consensus 561 ~ 561 (629)
T PRK11634 561 G 561 (629)
T ss_pred C
Confidence 5
No 254
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=45.70 E-value=17 Score=20.46 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=10.6
Q ss_pred CCCcHHHHHHHHHhcCC
Q 022688 16 SDIREYEVEDLFYKYGR 32 (293)
Q Consensus 16 ~~~t~~~l~~~F~~~G~ 32 (293)
.++++++|++.|.+.++
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46899999999988754
No 255
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=45.36 E-value=86 Score=21.85 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=24.9
Q ss_pred eEEEcCCCCCCcHHHHHHHHHh-cC-CeeEEEEe
Q 022688 8 TIYVGNLPSDIREYEVEDLFYK-YG-RILDIELK 39 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~-~G-~I~~v~i~ 39 (293)
+.|+-.++..+|..||++.|+. || +|..|...
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~ 54 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTL 54 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEE
Confidence 4555678999999999999987 66 66676663
No 256
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.75 E-value=31 Score=30.33 Aligned_cols=11 Identities=55% Similarity=0.534 Sum_probs=4.5
Q ss_pred CCCCCCCcccc
Q 022688 257 SRSVSPDKASA 267 (293)
Q Consensus 257 ~rsrs~~rs~~ 267 (293)
+|+.++.|.+.
T Consensus 88 sRs~sr~r~sr 98 (426)
T KOG2812|consen 88 SRSPSRDRESR 98 (426)
T ss_pred ccCCCcccccc
Confidence 34444444333
No 257
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=43.58 E-value=79 Score=19.59 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=42.1
Q ss_pred eEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCH----HHHHHHHHh
Q 022688 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA----RDAEDAIRG 64 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~----~~A~~A~~~ 64 (293)
|+.|.||.-.--...|.+.+...-.|..+.+... .+.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~---~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE---TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC---CCEEEEEEecCCCCHHHHHHHHHH
Confidence 6788899888889999999999988999988644 46788888754 455556653
No 258
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=42.66 E-value=57 Score=23.04 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=32.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCH
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA 55 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~ 55 (293)
+...-|||++++..+-+.--..+-+.++.=.-+-+..++...||+|-.+-+.
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 3456799999888777665555555554422233344555569998887653
No 259
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=41.72 E-value=98 Score=24.99 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=41.5
Q ss_pred CcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCC-CccC--CceEEEE
Q 022688 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFD--GCRLRVE 78 (293)
Q Consensus 18 ~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~i~--g~~l~v~ 78 (293)
.+.++..++...++.-. +.|+.++...|-+.+...+.++|..|+..+-. ..++ +..|.|+
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 46778888888776433 56777877767777888999999999987632 3332 3455554
No 260
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=38.75 E-value=1.7e+02 Score=22.36 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=41.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhh-cC-CeEEEEEeeCCCC-cEEEEEeCChhhHHHHHHh
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~-g~~fv~f~~~~~A~~a~~~ 181 (293)
.+.++.-++...+..+|++.++. |+ .|..|..+..+.+ .-|||.+..-.+|......
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 35666778899999999999988 55 5666666555544 4899999887776655443
No 261
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.18 E-value=5.5 Score=35.83 Aligned_cols=76 Identities=7% Similarity=-0.137 Sum_probs=58.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
+...|+..||..+++.++.-+|..||.|..+.+.. ++...-.+||.-.. .+|..+|..+-...+.|..++|.++..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 44567889999999999999999999998887732 23445677877665 467777777777778888888877754
No 262
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.07 E-value=2.6e+02 Score=26.87 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhC--CCcc------CCceEEEEEcCCCCCCCCCCC
Q 022688 20 EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNF------DGCRLRVELAHGGSGRGPSSS 91 (293)
Q Consensus 20 ~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~i------~g~~l~v~~~~~~~~~~~~~~ 91 (293)
.++|.+.|..-+-|..|.+.. .||-++.+....-+......+. +..+ .|++|.|+++.+.
T Consensus 60 A~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaN-------- 127 (577)
T COG0018 60 AEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSAN-------- 127 (577)
T ss_pred HHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCC--------
Confidence 344555555544566776652 2444444443333333333333 2222 5789999998865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEEeeCC
Q 022688 92 DRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDS 160 (293)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~ 160 (293)
+..-++|+.+-..+==+-|..++...| +|+....+.|-
T Consensus 128 -------------------------------ptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 128 -------------------------------PTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred -------------------------------CCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 334678888888888888999999998 67766666654
No 263
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=36.81 E-value=37 Score=30.16 Aligned_cols=64 Identities=23% Similarity=0.424 Sum_probs=48.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCC-eEEEEEeeCCCC------cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~------g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
..+.|..||+..+++++.+...++-. +....+.....+ +.+||.|...++...-...++|..+-
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 47889999999999999999888753 333333322111 48999999999988888888888775
No 264
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=35.21 E-value=55 Score=22.42 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=13.2
Q ss_pred CCCCCHHHHHHHHhhcCC
Q 022688 133 PSSASWQDLKDHMRKAGD 150 (293)
Q Consensus 133 ~~~~~~~~l~~~f~~~G~ 150 (293)
....+.+++.++...|..
T Consensus 59 ~~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 59 ASEPTQEEVDDFLGGYDA 76 (85)
T ss_pred hcCCCHHHHHHHHHHHHH
Confidence 456778888888887743
No 265
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=34.37 E-value=94 Score=21.49 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=30.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHh-cCCeeEEEEecCCCCCcEEEEEECC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELKIPPRPPCYCFVEFEN 54 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~I~~v~i~~~~~~~g~afV~f~~ 54 (293)
+...-|||++++..+-+.--..+-+. .++=.-+-+..++...||+|-.+-+
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 34567999999887765544444333 3332223334455667888877654
No 266
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=34.11 E-value=90 Score=26.71 Aligned_cols=13 Identities=38% Similarity=0.573 Sum_probs=5.8
Q ss_pred CCCCCCCcccccc
Q 022688 257 SRSVSPDKASAFW 269 (293)
Q Consensus 257 ~rsrs~~rs~~~~ 269 (293)
+|++||.+...|.
T Consensus 219 sRsrsp~r~d~~~ 231 (354)
T KOG2146|consen 219 SRSRSPPREDRYR 231 (354)
T ss_pred ccccCCccccccC
Confidence 3444444444444
No 267
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.67 E-value=60 Score=21.29 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.9
Q ss_pred cEEEEEECCHHHHHHHHHhhCCCcc
Q 022688 46 CYCFVEFENARDAEDAIRGRDGYNF 70 (293)
Q Consensus 46 g~afV~f~~~~~A~~A~~~l~g~~i 70 (293)
.+.+|.|.+..+|.+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4789999999999999998765555
No 268
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=33.48 E-value=1.2e+02 Score=20.12 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=28.4
Q ss_pred HHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCcc
Q 022688 25 DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (293)
Q Consensus 25 ~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i 70 (293)
.-+.+||.|..+.-. ..|+ |-|-+.++++..++.|....|
T Consensus 15 r~L~kfG~i~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 15 RQLRKFGDIHYVSKK-----MKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred HhHhhcccEEEEECC-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 356789998777443 2343 557889999999998876544
No 269
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=33.25 E-value=3.7e+02 Score=26.21 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=35.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHh---cCCeeEEEEecCCCCCcEEE-EEECCHHHHHHHHHhh
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYK---YGRILDIELKIPPRPPCYCF-VEFENARDAEDAIRGR 65 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~---~G~I~~v~i~~~~~~~g~af-V~f~~~~~A~~A~~~l 65 (293)
.++|.|..||+.++.+.|.+.... =|+|. |.=..+....+..| |++.....++..+..|
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~L 282 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIEAL 282 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHHHH
Confidence 468999999999999988876542 34543 22223323345555 4555555565555443
No 270
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=32.76 E-value=83 Score=21.37 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=24.0
Q ss_pred CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCC
Q 022688 32 RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (293)
Q Consensus 32 ~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 68 (293)
.|.++.. .+..+||-|||=.++.++..|+..+.+.
T Consensus 33 ~I~Si~~--~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFA--PDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEE--eCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 3444433 3457999999999999999999877543
No 271
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=31.96 E-value=1.5e+02 Score=20.50 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=33.2
Q ss_pred eEEEcCCCCCCcHHHHHHHHHh-cC-CeeEEEEec-C------CC------CCcEEEEEECCHH
Q 022688 8 TIYVGNLPSDIREYEVEDLFYK-YG-RILDIELKI-P------PR------PPCYCFVEFENAR 56 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~-~G-~I~~v~i~~-~------~~------~~g~afV~f~~~~ 56 (293)
..|+-.++..+|..||++.++. || +|..|.... . +. ..--|+|++...+
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~ 84 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGD 84 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTS
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCC
Confidence 3455578999999999999986 66 566666622 1 11 1136888888763
No 272
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=31.89 E-value=1e+02 Score=26.52 Aligned_cols=54 Identities=7% Similarity=0.073 Sum_probs=44.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC-----------CcEEEEEeCChhhHHH
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-----------GTYGVVDYTNPEDMKY 177 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-----------~g~~fv~f~~~~~A~~ 177 (293)
++.|.+.|+..+++--.+-..|.+||+|+.+.++.+.. .....+.|-+.+.+..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 45788999999999999999999999999999998761 1367778888776654
No 273
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=31.59 E-value=19 Score=15.22 Aligned_cols=6 Identities=67% Similarity=1.918 Sum_probs=4.5
Q ss_pred ccceee
Q 022688 269 WKWLIL 274 (293)
Q Consensus 269 ~~~~~~ 274 (293)
|||+.+
T Consensus 1 WhWL~~ 6 (13)
T PF04648_consen 1 WHWLRL 6 (13)
T ss_pred Ccceec
Confidence 788765
No 274
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=30.29 E-value=75 Score=26.97 Aligned_cols=32 Identities=28% Similarity=0.176 Sum_probs=25.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEE
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i 38 (293)
-...|+|||+++|..-|..++...-.+..+.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 35678999999999999999987655544444
No 275
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=30.20 E-value=35 Score=25.82 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=28.9
Q ss_pred eEEEcCCCCC-CcHHHHHHHHHhcCCeeEEEEecC
Q 022688 8 TIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIP 41 (293)
Q Consensus 8 ~l~V~nLp~~-~t~~~l~~~F~~~G~I~~v~i~~~ 41 (293)
-|.|.|||.. .+++-|..+.+.+|++..+.....
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 3678899988 788999999999999999887543
No 276
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.33 E-value=1.3e+02 Score=28.20 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=43.6
Q ss_pred EEcCCCCCC---cHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceE
Q 022688 10 YVGNLPSDI---REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (293)
Q Consensus 10 ~V~nLp~~~---t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l 75 (293)
+||||+.-. ...-+.++-.+||+|-.+++=. .-.|.-.+.+.|++|+. -++..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 567775432 3455666667999999887721 23677889999999999 67899999886
No 277
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=29.16 E-value=2.4e+02 Score=20.97 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=50.1
Q ss_pred CCCeEEEcCCCCC---CcHHHHHHHHHhcC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 5 FSRTIYVGNLPSD---IREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 5 ~~~~l~V~nLp~~---~t~~~l~~~F~~~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
+.-.|.|...... .+...+.+....-| .++.+... .+...|.|.++++-.+|.+.+....-++-.|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4567777776444 56778888888877 45555443 236889999999999999888765555556665554
Q ss_pred C
Q 022688 81 H 81 (293)
Q Consensus 81 ~ 81 (293)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 4
No 278
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=27.76 E-value=1.8e+02 Score=19.07 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhh
Q 022688 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (293)
Q Consensus 21 ~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (293)
.+|.+++..+| +....+.-.+ .-++.|+-+.+.+.++++.+.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG-~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG-GGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS-SSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC-CCCeEEEEECCHHHHHHHHHHH
Confidence 35667778888 5555555332 2467888888999988888765
No 279
>CHL00030 rpl23 ribosomal protein L23
Probab=27.73 E-value=2.2e+02 Score=19.94 Aligned_cols=32 Identities=13% Similarity=0.318 Sum_probs=25.3
Q ss_pred eEEEcCCCCCCcHHHHHHHHHh-cC-CeeEEEEe
Q 022688 8 TIYVGNLPSDIREYEVEDLFYK-YG-RILDIELK 39 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~-~G-~I~~v~i~ 39 (293)
+.|+-.++.++|..+|++.++. || +|..|...
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~ 53 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSH 53 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEE
Confidence 5566678999999999999987 66 67777663
No 280
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=27.52 E-value=24 Score=23.08 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=18.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHH
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFY 28 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~ 28 (293)
.-+++||||+||..+-++.=..++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHH
Confidence 3578999999999876665444444
No 281
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.47 E-value=19 Score=32.21 Aligned_cols=10 Identities=10% Similarity=-0.190 Sum_probs=4.0
Q ss_pred ehhhhhHHHh
Q 022688 275 ITDVQTFHSL 284 (293)
Q Consensus 275 ~~~~~~~~~~ 284 (293)
+++.+.+++|
T Consensus 328 r~~ee~srs~ 337 (450)
T KOG3869|consen 328 REPEEESRSP 337 (450)
T ss_pred cCchhhccCc
Confidence 3444444433
No 282
>PRK02886 hypothetical protein; Provisional
Probab=27.41 E-value=2.1e+02 Score=19.74 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=35.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCcc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i 70 (293)
+-+-.||+..+-. ...+.+||.|..+.-. ..| .|-|-|.++|+..++.|....|
T Consensus 5 R~glIVyl~~~k~-------~r~LrkyG~I~Y~Skr-----~kY-vvlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 5 RQGIIVWLHSLKQ-------AKQLRKFGNVHYVSKR-----LKY-AVLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred eeEEEEEEeecHh-------HHHHhhcCcEEEEecc-----ccE-EEEEECHHHHHHHHHHHhcCCC
Confidence 3344566655421 3345789999777443 234 3568899999999998876554
No 283
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=27.25 E-value=1.3e+02 Score=24.36 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHhcCC---eeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccC
Q 022688 18 IREYEVEDLFYKYGR---ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (293)
Q Consensus 18 ~t~~~l~~~F~~~G~---I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~ 71 (293)
.+.+++.+....+|. |....+..-++.++-+...-.++++|..+...|=|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 578888888888774 444444444566664444456899999999989888775
No 284
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=27.14 E-value=19 Score=23.43 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhC
Q 022688 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (293)
Q Consensus 21 ~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (293)
++|++.|..++....+. +-.+|..|.+.++|..++..++
T Consensus 27 ~~v~~~~~~~~~f~k~v-------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV-------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh-------hhhhccCCCCHHHHHHHHHHhh
Confidence 57777777554333221 2258999999999988877553
No 285
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=26.41 E-value=1.4e+02 Score=20.90 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=35.0
Q ss_pred CCCCCCcHHHHHHHHHhcCCeeEEEE-ecCCCCCcEEEEEECCHHHHHHHHHhh
Q 022688 13 NLPSDIREYEVEDLFYKYGRILDIEL-KIPPRPPCYCFVEFENARDAEDAIRGR 65 (293)
Q Consensus 13 nLp~~~t~~~l~~~F~~~G~I~~v~i-~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (293)
.+-+.++...|...|-.-|.= .+.- ...+.=+.+|.|+|.+.+.+..|...|
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk-~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~L 71 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKK-NKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKL 71 (91)
T ss_pred ecCcccChhHHHHhccCCCcc-cCCchhccccceEeEEEECCChHHHHHHHHHH
Confidence 456778888888888766621 1111 111222469999999999999998866
No 286
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.89 E-value=1.8e+02 Score=18.30 Aligned_cols=47 Identities=21% Similarity=0.099 Sum_probs=28.8
Q ss_pred cHHHHHHHHHhcC-CeeEEEEecCC-CCCcEEEEEECCHHHHHHHHHhh
Q 022688 19 REYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIRGR 65 (293)
Q Consensus 19 t~~~l~~~F~~~G-~I~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l 65 (293)
.-.+|.++|..+| .|..+...... ...+...+.+...++.+.+++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 4457888998887 67777654321 12455667776655555555544
No 287
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=25.10 E-value=80 Score=26.66 Aligned_cols=28 Identities=32% Similarity=0.617 Sum_probs=23.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHH--hcCCe
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFY--KYGRI 33 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~--~~G~I 33 (293)
...++|+|||+.++..-|.+++. .+|.+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CceEEEEEecccchHHHHHHHhhccccccc
Confidence 45789999999999999999987 45543
No 288
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=24.63 E-value=5.2e+02 Score=26.22 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=35.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHh---cCCeeEEEEecCCCCCcEEE-EEECCHHHHHHHHHhh
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYK---YGRILDIELKIPPRPPCYCF-VEFENARDAEDAIRGR 65 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~---~G~I~~v~i~~~~~~~g~af-V~f~~~~~A~~A~~~l 65 (293)
..+|.|..||+.++.+.|.+-... =|+|. |.-..+....+.-| |++....+++..+..|
T Consensus 241 ~~~ivItEiPy~~~t~~lie~I~~~~~~~ki~-I~di~D~s~~~vrivI~lk~~~~~~~~~~~L 303 (869)
T PRK12758 241 KKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVEDNTAADVEILVHLAPGVSPDKTIDAL 303 (869)
T ss_pred CCEEEEEecCCcccHHHHHHHHHHHHhcCCCc-eeeeEecCCCceEEEEEeCCCCCHHHHHHHH
Confidence 568999999999888877665543 35554 33333323345555 4555555566555544
No 289
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=24.29 E-value=3.2e+02 Score=20.94 Aligned_cols=33 Identities=36% Similarity=0.436 Sum_probs=25.0
Q ss_pred eeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCC
Q 022688 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (293)
Q Consensus 33 I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 67 (293)
|.++.++ ...+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp--~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAP--PELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEcc--CCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 5555443 34689999999988999999987654
No 290
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=24.24 E-value=35 Score=30.58 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=45.0
Q ss_pred CCCeEEEcCCCCCCcHH--------HHHHHHHh--cCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHh
Q 022688 5 FSRTIYVGNLPSDIREY--------EVEDLFYK--YGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRG 64 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~--------~l~~~F~~--~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~ 64 (293)
..+.+|+.++....+.+ ++...|.. .+++..+.+.. .....|..|++|.....|+++...
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 34567777777665444 89999998 66777777744 345678899999999999998853
No 291
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=23.96 E-value=2.3e+02 Score=26.67 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=34.9
Q ss_pred HHHHHHHHH----hcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhC
Q 022688 20 EYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRD 66 (293)
Q Consensus 20 ~~~l~~~F~----~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~ 66 (293)
--+|..+|. .+|-|.++.+... .......++.|.+.++|..|+..+-
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 446777776 6888999888443 2334677889999999999988753
No 292
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=23.77 E-value=4.5e+02 Score=24.53 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=36.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHh---cCCeeEEEEecCCCCCcEEE-EEECCHHHHHHHHHhh
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYK---YGRILDIELKIPPRPPCYCF-VEFENARDAEDAIRGR 65 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~---~G~I~~v~i~~~~~~~g~af-V~f~~~~~A~~A~~~l 65 (293)
.++|-|..||+.++.+.|.+.... =|.|. |.=..+....++.| |++....+++..+..|
T Consensus 220 ~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~~~v~i~I~Lk~~~~~~~vl~~L 282 (479)
T PRK09630 220 DKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFSTDLPHIEIKLPKGIYAKDLLRPL 282 (479)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCCCCceEEEEECCCCCHHHHHHHH
Confidence 468999999999999888876543 35553 22222322234444 5566666666666655
No 293
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=23.23 E-value=1.3e+02 Score=18.31 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGR 32 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~ 32 (293)
..++|.+.....+.++|.+++..+|-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46788888778899999999999985
No 294
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=23.15 E-value=1e+02 Score=26.85 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=18.9
Q ss_pred EEEEeCChhhHHHHHHhcCCcc
Q 022688 165 GVVDYTNPEDMKYAIRKLDDTE 186 (293)
Q Consensus 165 ~fv~f~~~~~A~~a~~~l~g~~ 186 (293)
|||+|++..+|..|++.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 7999999999999999666555
No 295
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.74 E-value=72 Score=25.35 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=45.9
Q ss_pred eEEEcCCCCCCC-----HHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCc-eeEee
Q 022688 126 RVIVRGLPSSAS-----WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG-RITVK 199 (293)
Q Consensus 126 ~l~v~nl~~~~~-----~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~-~i~v~ 199 (293)
.+.+.+++..+. ......+|.+|.+.....+.+.. +..-|.|.+++.|..|..++++..+. |. .+...
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~----~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFN----GKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccC----CCceEEEE
Confidence 455555554432 23455666666555444444432 36678899999999999999999998 44 55555
Q ss_pred cCC
Q 022688 200 RYD 202 (293)
Q Consensus 200 ~~~ 202 (293)
.+.
T Consensus 86 faQ 88 (193)
T KOG4019|consen 86 FAQ 88 (193)
T ss_pred Ecc
Confidence 554
No 296
>PRK02302 hypothetical protein; Provisional
Probab=22.28 E-value=2.3e+02 Score=19.65 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=28.5
Q ss_pred HHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCcc
Q 022688 25 DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (293)
Q Consensus 25 ~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i 70 (293)
..+.+||.|..+.-. ..| .|-|-+.++|+..++.|....|
T Consensus 21 r~LrkfG~I~Y~Skk-----~kY-vvlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 21 RKLSKYGDIVYHSKR-----SRY-LVLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HHHhhcCcEEEEecc-----ccE-EEEEECHHHHHHHHHHHhcCCC
Confidence 345789998776443 234 3568899999999998876554
No 297
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=21.86 E-value=61 Score=20.78 Aligned_cols=16 Identities=38% Similarity=0.833 Sum_probs=9.6
Q ss_pred HHHHHHHHhcCCeeEE
Q 022688 21 YEVEDLFYKYGRILDI 36 (293)
Q Consensus 21 ~~l~~~F~~~G~I~~v 36 (293)
=|+.+++.+||.++.+
T Consensus 5 yDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 5 YDVQQLLKKFGIIIYV 20 (62)
T ss_dssp HHHHHHHHTTS-----
T ss_pred HHHHHHHHHCCEEEEe
Confidence 4789999999976554
No 298
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=21.70 E-value=2.4e+02 Score=19.79 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=27.5
Q ss_pred eEEEcCCCCCCcHHHHHHH---HHhcCCeeEEEE-----ecCCCCCcEEEEEEC
Q 022688 8 TIYVGNLPSDIREYEVEDL---FYKYGRILDIEL-----KIPPRPPCYCFVEFE 53 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~---F~~~G~I~~v~i-----~~~~~~~g~afV~f~ 53 (293)
..|+.|||.++.+.++... +..++.-..|.+ .......|++.+-+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 3588999999998887654 445554444444 123455666665554
No 299
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=21.45 E-value=23 Score=33.01 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=48.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
..+.+++.|+++..+.++|..+|..+--+..+.+.....- .+++|.|.---....|+-+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4568999999999999999999999865555444332211 27888998766666777777776664
No 300
>PHA01632 hypothetical protein
Probab=20.97 E-value=1.1e+02 Score=19.09 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=16.7
Q ss_pred EEEcCCCCCCcHHHHHHHHHh
Q 022688 9 IYVGNLPSDIREYEVEDLFYK 29 (293)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~ 29 (293)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445688999999999987654
No 301
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=20.97 E-value=2.5e+02 Score=18.22 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=37.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN 54 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~ 54 (293)
..+|+|.++.-.--...+.+.......|..+.+... .+.++|.|.+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~---~~~~~V~~d~ 48 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE---KGTATVTFDS 48 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc---cCeEEEEEcC
Confidence 457888888888888899999999888999888654 4569999987
No 302
>PF15063 TC1: Thyroid cancer protein 1
Probab=20.42 E-value=71 Score=21.31 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.4
Q ss_pred EEcCCCCCCcHHHHHHHHHhcCCe
Q 022688 10 YVGNLPSDIREYEVEDLFYKYGRI 33 (293)
Q Consensus 10 ~V~nLp~~~t~~~l~~~F~~~G~I 33 (293)
-+.||=.+++.++|..||..-|..
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccch
Confidence 356788889999999999999964
No 303
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.32 E-value=2.2e+02 Score=17.34 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=24.9
Q ss_pred HHHHHHHHhcC-CeeEEEEecCC-CCCcEEEEEECCHHHHHHHHH
Q 022688 21 YEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIR 63 (293)
Q Consensus 21 ~~l~~~F~~~G-~I~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~ 63 (293)
.+|.++|.++| .|..+...... .......+..++.+.+.++++
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~ 58 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ 58 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH
Confidence 46667787776 66666553332 123344455567666666666
No 304
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=20.23 E-value=3e+02 Score=18.94 Aligned_cols=45 Identities=9% Similarity=-0.018 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcC-CeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhc
Q 022688 138 WQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182 (293)
Q Consensus 138 ~~~l~~~f~~~G-~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l 182 (293)
.+.++++++..| ++..+.+..........+++.+.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 456788888886 788888887765557777888888777666443
Done!