Query 022688
Match_columns 293
No_of_seqs 278 out of 2832
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 7.7E-34 2.6E-38 233.2 17.4 164 3-203 12-180 (213)
2 1b7f_A Protein (SXL-lethal pro 100.0 2.6E-32 8.9E-37 215.6 20.1 160 5-201 2-168 (168)
3 3md3_A Nuclear and cytoplasmic 100.0 2.6E-32 8.9E-37 215.0 19.9 159 7-202 1-165 (166)
4 1fxl_A Paraneoplastic encephal 100.0 9.9E-32 3.4E-36 211.9 21.2 158 5-201 1-167 (167)
5 3tyt_A Heterogeneous nuclear r 100.0 3.4E-32 1.2E-36 221.5 18.8 195 4-200 2-203 (205)
6 1l3k_A Heterogeneous nuclear r 100.0 6.6E-32 2.3E-36 218.6 19.1 168 4-206 11-185 (196)
7 3nmr_A Cugbp ELAV-like family 100.0 1.1E-31 3.7E-36 213.4 19.3 163 5-202 2-175 (175)
8 3pgw_A U1-A; protein-RNA compl 100.0 7.6E-31 2.6E-35 224.5 25.2 195 4-202 7-281 (282)
9 2qfj_A FBP-interacting repress 100.0 2.9E-31 9.9E-36 218.1 20.2 173 5-205 27-206 (216)
10 2adc_A Polypyrimidine tract-bi 100.0 8.1E-31 2.8E-35 217.6 22.9 190 4-203 32-227 (229)
11 1qm9_A Polypyrimidine tract-bi 100.0 6.2E-31 2.1E-35 213.4 19.9 191 6-202 3-195 (198)
12 2g4b_A Splicing factor U2AF 65 100.0 8.9E-31 3E-35 207.6 19.4 155 4-201 2-171 (172)
13 2yh0_A Splicing factor U2AF 65 100.0 3.7E-30 1.3E-34 208.7 23.1 179 4-205 2-195 (198)
14 2cjk_A Nuclear polyadenylated 100.0 2.1E-31 7.2E-36 210.2 12.6 158 4-203 1-165 (167)
15 1fje_B Nucleolin RBD12, protei 100.0 3E-31 1E-35 211.0 12.2 162 3-203 10-173 (175)
16 3sde_A Paraspeckle component 1 100.0 1.4E-29 4.8E-34 214.2 17.7 156 4-203 20-178 (261)
17 3smz_A Protein raver-1, ribonu 100.0 2.6E-29 8.9E-34 215.2 18.8 166 4-205 93-265 (284)
18 3smz_A Protein raver-1, ribonu 100.0 8.9E-29 3E-33 211.8 20.0 151 4-203 20-174 (284)
19 2ghp_A U4/U6 snRNA-associated 100.0 4.7E-29 1.6E-33 214.4 18.0 167 5-204 116-291 (292)
20 2ghp_A U4/U6 snRNA-associated 100.0 1.2E-28 4.1E-33 211.9 18.2 153 4-203 39-196 (292)
21 4f25_A Polyadenylate-binding p 99.9 5.5E-24 1.9E-28 157.1 9.9 109 5-140 4-113 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 1.4E-21 4.9E-26 175.7 18.6 81 4-84 100-183 (437)
23 4fxv_A ELAV-like protein 1; RN 99.9 9.3E-22 3.2E-26 141.0 10.2 78 5-82 18-98 (99)
24 3lqv_A PRE-mRNA branch site pr 99.9 1.1E-21 3.7E-26 144.8 9.4 106 2-150 4-109 (115)
25 2kn4_A Immunoglobulin G-bindin 99.8 1.8E-20 6.2E-25 146.2 14.0 145 36-206 3-152 (158)
26 2hvz_A Splicing factor, argini 99.8 1E-20 3.4E-25 136.3 10.4 76 7-84 1-76 (101)
27 1x4a_A Splicing factor, argini 99.8 2.2E-20 7.4E-25 136.5 11.8 82 2-83 18-99 (109)
28 2lxi_A RNA-binding protein 10; 99.8 4E-21 1.4E-25 135.5 7.6 79 6-84 1-84 (91)
29 1sjq_A Polypyrimidine tract-bi 99.8 1.7E-20 5.8E-25 134.4 10.5 80 2-84 12-93 (105)
30 2wbr_A GW182, gawky, LD47780P; 99.8 2E-20 7E-25 128.0 10.0 75 4-81 5-79 (89)
31 2fy1_A RNA-binding motif prote 99.8 6E-20 2E-24 135.5 13.0 83 1-83 2-86 (116)
32 3s8s_A Histone-lysine N-methyl 99.8 2.1E-20 7.2E-25 136.4 10.1 80 4-83 4-86 (110)
33 2i2y_A Fusion protein consists 99.8 6.3E-20 2.2E-24 141.8 13.3 137 43-204 11-148 (150)
34 3r27_A HnRNP L, heterogeneous 99.8 3.3E-20 1.1E-24 131.6 10.3 77 4-83 19-97 (100)
35 2dgu_A Heterogeneous nuclear r 99.8 1E-19 3.5E-24 131.5 13.2 79 4-87 9-87 (103)
36 3pgw_S U1-70K; protein-RNA com 99.8 1.5E-20 5.3E-25 169.0 10.6 77 122-202 100-180 (437)
37 2dnz_A Probable RNA-binding pr 99.8 1.4E-19 4.6E-24 128.8 13.2 81 3-83 2-85 (95)
38 1whw_A Hypothetical protein ri 99.8 1.1E-19 3.7E-24 130.4 12.4 81 4-84 6-89 (99)
39 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.6E-19 5.5E-24 130.4 13.2 81 3-83 12-93 (103)
40 2a3j_A U1 small nuclear ribonu 99.8 6.1E-20 2.1E-24 137.1 11.2 81 3-83 26-110 (127)
41 2x1f_A MRNA 3'-END-processing 99.8 7.1E-20 2.4E-24 130.6 10.7 79 5-83 1-82 (96)
42 2cpf_A RNA binding motif prote 99.8 7.3E-20 2.5E-24 131.0 10.7 81 3-83 2-88 (98)
43 2dgo_A Cytotoxic granule-assoc 99.8 2E-19 6.7E-24 132.7 13.1 82 4-85 13-97 (115)
44 2do0_A HnRNP M, heterogeneous 99.8 2.9E-19 1E-23 131.5 13.5 82 3-84 12-95 (114)
45 2ad9_A Polypyrimidine tract-bi 99.8 1E-19 3.5E-24 133.6 10.8 79 3-84 28-108 (119)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.9E-20 2.7E-24 127.2 9.8 79 3-81 4-85 (85)
47 1nu4_A U1A RNA binding domain; 99.8 3.2E-20 1.1E-24 132.6 7.9 83 1-83 3-89 (97)
48 1x4d_A Matrin 3; structural ge 99.8 4.8E-20 1.6E-24 132.0 8.7 78 3-83 12-92 (102)
49 2d9p_A Polyadenylate-binding p 99.8 1.3E-19 4.4E-24 130.9 11.0 82 3-84 12-94 (103)
50 1x5t_A Splicing factor 3B subu 99.8 1.2E-19 4E-24 129.4 10.7 81 3-83 2-86 (96)
51 2dgv_A HnRNP M, heterogeneous 99.8 1.3E-19 4.4E-24 128.1 10.8 82 2-83 4-86 (92)
52 2cqd_A RNA-binding region cont 99.8 3.9E-19 1.3E-23 131.3 13.7 80 3-83 14-96 (116)
53 3md1_A Nuclear and cytoplasmic 99.8 1.3E-19 4.3E-24 125.6 10.4 78 6-83 1-81 (83)
54 2lkz_A RNA-binding protein 5; 99.8 3.6E-20 1.2E-24 131.3 7.7 79 4-82 7-94 (95)
55 2dgs_A DAZ-associated protein 99.8 3E-19 1E-23 128.0 12.6 79 4-83 8-89 (99)
56 2dgx_A KIAA0430 protein; RRM d 99.8 1.6E-19 5.3E-24 128.8 11.0 80 4-83 7-90 (96)
57 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.7E-20 3E-24 127.6 9.4 80 4-83 4-86 (87)
58 2cq3_A RNA-binding protein 9; 99.8 3.7E-19 1.3E-23 128.5 13.0 81 4-84 13-94 (103)
59 2e5h_A Zinc finger CCHC-type a 99.8 1.4E-19 4.9E-24 128.4 10.6 78 4-81 14-94 (94)
60 2dnm_A SRP46 splicing factor; 99.8 1.1E-19 3.8E-24 131.3 10.2 80 4-83 11-93 (103)
61 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.1E-19 3.9E-24 131.0 10.1 81 4-84 10-93 (102)
62 4a8x_A RNA-binding protein wit 99.8 1.7E-19 5.6E-24 126.4 10.5 80 4-83 2-85 (88)
63 2cq1_A PTB-like protein L; RRM 99.8 2.7E-19 9.1E-24 128.2 11.7 78 3-83 12-91 (101)
64 1x5s_A Cold-inducible RNA-bind 99.8 2.2E-19 7.4E-24 129.5 11.2 80 4-83 10-92 (102)
65 2do4_A Squamous cell carcinoma 99.8 2.2E-19 7.5E-24 129.0 11.2 80 4-83 15-96 (100)
66 1x5u_A Splicing factor 3B subu 99.8 2.3E-19 7.9E-24 130.1 11.2 80 4-83 13-95 (105)
67 2cq0_A Eukaryotic translation 99.8 1.1E-19 3.8E-24 131.3 9.4 80 4-83 13-95 (103)
68 2div_A TRNA selenocysteine ass 99.8 1.1E-19 3.7E-24 130.4 9.1 82 2-83 5-94 (99)
69 2cpz_A CUG triplet repeat RNA- 99.8 1.9E-19 6.5E-24 132.7 10.6 81 4-84 23-106 (115)
70 1wex_A Hypothetical protein (r 99.8 4.1E-19 1.4E-23 128.0 11.9 77 4-83 13-91 (104)
71 2ywk_A Putative RNA-binding pr 99.8 1.6E-19 5.6E-24 128.4 9.7 80 3-82 13-94 (95)
72 2cqc_A Arginine/serine-rich sp 99.8 1.7E-19 5.7E-24 128.3 9.7 79 4-82 13-94 (95)
73 2dnh_A Bruno-like 5, RNA bindi 99.8 3.1E-19 1E-23 129.4 11.3 82 4-85 13-99 (105)
74 2dnq_A RNA-binding protein 4B; 99.8 4.6E-19 1.6E-23 124.8 11.8 76 3-83 5-80 (90)
75 1p27_B RNA-binding protein 8A; 99.8 1.8E-19 6.1E-24 130.9 9.8 80 4-83 21-103 (106)
76 1why_A Hypothetical protein ri 99.8 4.1E-19 1.4E-23 126.8 11.4 77 4-83 15-93 (97)
77 2cph_A RNA binding motif prote 99.8 4.4E-19 1.5E-23 129.0 11.8 80 4-83 13-97 (107)
78 2dgt_A RNA-binding protein 30; 99.8 5.1E-19 1.8E-23 125.0 11.8 76 3-83 7-82 (92)
79 1x4c_A Splicing factor, argini 99.8 8.2E-19 2.8E-23 127.8 13.0 76 4-83 13-93 (108)
80 1wi8_A EIF-4B, eukaryotic tran 99.8 2.5E-19 8.4E-24 129.7 9.9 79 3-83 12-94 (104)
81 2dgp_A Bruno-like 4, RNA bindi 99.8 4.2E-19 1.4E-23 128.9 11.1 81 3-83 10-96 (106)
82 1x4h_A RNA-binding protein 28; 99.8 5.9E-19 2E-23 129.2 11.8 80 4-83 13-101 (111)
83 2kxn_B Transformer-2 protein h 99.8 2.6E-19 9E-24 134.5 9.7 80 4-83 44-126 (129)
84 3ns6_A Eukaryotic translation 99.8 1.2E-19 4.2E-24 130.3 7.3 79 4-82 4-92 (100)
85 1s79_A Lupus LA protein; RRM, 99.8 2.6E-19 8.8E-24 129.0 9.0 78 4-82 9-88 (103)
86 2dnp_A RNA-binding protein 14; 99.8 7.2E-19 2.5E-23 123.8 11.1 75 4-83 7-81 (90)
87 2jrs_A RNA-binding protein 39; 99.8 3.7E-19 1.3E-23 129.5 9.8 81 3-83 23-106 (108)
88 3ulh_A THO complex subunit 4; 99.8 4.7E-19 1.6E-23 128.9 10.3 78 4-81 27-106 (107)
89 2jvr_A Nucleolar protein 3; RN 99.8 2.9E-19 9.9E-24 130.1 9.0 79 4-83 26-105 (111)
90 2dis_A Unnamed protein product 99.8 1.1E-18 3.8E-23 127.3 12.2 83 3-85 5-94 (109)
91 2la6_A RNA-binding protein FUS 99.8 4.9E-19 1.7E-23 126.9 10.1 78 4-81 11-99 (99)
92 1u6f_A Tcubp1, RNA-binding pro 99.8 1E-18 3.6E-23 133.2 12.3 80 4-83 40-122 (139)
93 3p5t_L Cleavage and polyadenyl 99.8 7.5E-20 2.6E-24 128.8 5.5 77 7-83 2-83 (90)
94 1oo0_B CG8781-PA, drosophila Y 99.8 3.9E-19 1.3E-23 130.0 9.4 80 4-83 24-106 (110)
95 2dng_A Eukaryotic translation 99.8 7.4E-19 2.5E-23 126.9 10.6 80 2-83 11-93 (103)
96 1x4g_A Nucleolysin TIAR; struc 99.8 1.3E-18 4.5E-23 126.9 12.0 78 4-84 23-100 (109)
97 2cpi_A CCR4-NOT transcription 99.8 2.1E-19 7.1E-24 131.6 7.6 80 4-83 13-101 (111)
98 1x4f_A Matrin 3; structural ge 99.8 3E-19 1E-23 129.7 8.2 78 3-83 22-102 (112)
99 2cq2_A Hypothetical protein LO 99.8 5.9E-19 2E-23 128.2 9.8 80 1-83 20-106 (114)
100 2dhg_A TRNA selenocysteine ass 99.8 8.9E-19 3.1E-23 126.7 10.6 82 3-84 6-91 (104)
101 2khc_A Testis-specific RNP-typ 99.8 4E-19 1.4E-23 131.6 8.9 79 3-81 37-118 (118)
102 2kvi_A Nuclear polyadenylated 99.8 4.8E-19 1.6E-23 126.2 9.0 75 4-83 8-83 (96)
103 2krb_A Eukaryotic translation 99.8 2.8E-19 9.5E-24 123.3 7.4 72 6-77 1-80 (81)
104 2xnq_A Nuclear polyadenylated 99.8 1.3E-18 4.5E-23 124.1 11.1 75 4-83 20-95 (97)
105 2err_A Ataxin-2-binding protei 99.8 5.7E-19 1.9E-23 128.8 9.4 80 4-83 27-107 (109)
106 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.1E-18 3.6E-23 135.8 11.5 81 4-84 37-120 (156)
107 2ytc_A PRE-mRNA-splicing facto 99.8 8.8E-19 3E-23 121.9 10.0 75 4-81 10-85 (85)
108 2cpe_A RNA-binding protein EWS 99.8 8.7E-19 3E-23 128.8 10.4 80 4-83 13-103 (113)
109 2nlw_A Eukaryotic translation 99.8 7.5E-19 2.6E-23 127.3 9.9 80 4-83 13-100 (105)
110 3s7r_A Heterogeneous nuclear r 99.8 1E-18 3.6E-23 122.1 10.2 77 3-80 8-87 (87)
111 3ucg_A Polyadenylate-binding p 99.8 1.1E-18 3.7E-23 122.5 10.2 78 5-83 5-85 (89)
112 2cpx_A Hypothetical protein FL 99.8 9.3E-19 3.2E-23 129.0 10.1 80 4-84 23-106 (115)
113 3ex7_B RNA-binding protein 8A; 99.8 6.9E-19 2.3E-23 131.9 9.6 80 4-83 20-102 (126)
114 3beg_B Splicing factor, argini 99.8 3E-19 1E-23 131.6 7.4 75 121-202 13-92 (115)
115 2jvo_A Nucleolar protein 3; nu 99.8 1E-18 3.5E-23 127.1 10.0 75 4-83 29-103 (108)
116 2cpj_A Non-POU domain-containi 99.8 8.5E-19 2.9E-23 125.7 9.3 77 4-83 13-89 (99)
117 2cqh_A IGF-II mRNA-binding pro 99.8 1.2E-18 4.1E-23 123.4 10.0 78 2-83 4-83 (93)
118 1x4e_A RNA binding motif, sing 99.8 1.8E-19 6E-24 125.5 5.3 79 3-81 2-83 (85)
119 2e5j_A Methenyltetrahydrofolat 99.8 1.3E-18 4.5E-23 124.2 9.9 78 4-83 17-94 (97)
120 2fc9_A NCL protein; structure 99.8 1.2E-18 4E-23 125.4 9.5 79 4-83 13-91 (101)
121 2cpd_A Apobec-1 stimulating pr 99.8 3.2E-18 1.1E-22 122.6 11.7 75 4-83 13-89 (99)
122 2la4_A Nuclear and cytoplasmic 99.8 8.4E-19 2.9E-23 126.2 8.6 76 4-82 25-100 (101)
123 1whx_A Hypothetical protein ri 99.8 6.4E-19 2.2E-23 128.9 7.8 77 4-83 8-84 (111)
124 2kt5_A RNA and export factor-b 99.8 3.1E-18 1.1E-22 127.9 11.7 80 4-83 33-114 (124)
125 2rs2_A Musashi-1, RNA-binding 99.8 2.3E-18 7.8E-23 125.6 10.7 79 4-83 23-104 (109)
126 2dh8_A DAZ-associated protein 99.8 8E-19 2.8E-23 127.2 8.2 80 3-83 13-95 (105)
127 3n9u_C Cleavage and polyadenyl 99.8 1.3E-18 4.3E-23 135.0 9.8 78 5-82 54-136 (156)
128 2ek1_A RNA-binding protein 12; 99.8 4E-19 1.4E-23 126.4 6.1 79 4-82 13-94 (95)
129 1p1t_A Cleavage stimulation fa 99.8 1.2E-18 4.1E-23 126.0 8.6 80 4-83 6-88 (104)
130 2cqp_A RNA-binding protein 12; 99.8 6.1E-19 2.1E-23 126.2 6.9 80 4-83 13-95 (98)
131 1x4c_A Splicing factor, argini 99.8 8.6E-18 2.9E-22 122.3 13.1 81 120-203 11-92 (108)
132 2mss_A Protein (musashi1); RNA 99.8 8.2E-19 2.8E-23 119.0 6.9 72 8-80 1-75 (75)
133 1fjc_A Nucleolin RBD2, protein 99.8 8.3E-19 2.8E-23 125.0 7.2 78 4-83 14-91 (96)
134 2m2b_A RNA-binding protein 10; 99.8 1E-18 3.6E-23 131.8 8.0 81 2-83 19-108 (131)
135 3egn_A RNA-binding protein 40; 99.8 1.3E-18 4.6E-23 133.2 8.4 82 3-84 42-131 (143)
136 2dgw_A Probable RNA-binding pr 99.8 4E-18 1.4E-22 120.1 10.2 78 4-83 8-87 (91)
137 1wf1_A RNA-binding protein RAL 99.8 2.7E-18 9.4E-23 125.4 9.6 74 5-83 26-100 (110)
138 2kn4_A Immunoglobulin G-bindin 99.8 5.5E-18 1.9E-22 132.0 11.8 80 4-83 68-150 (158)
139 2cqg_A TDP-43, TAR DNA-binding 99.8 8E-18 2.7E-22 121.4 11.6 79 3-83 12-93 (103)
140 2fc8_A NCL protein; structure 99.8 2.2E-18 7.6E-23 124.1 8.6 80 4-83 13-92 (102)
141 2lea_A Serine/arginine-rich sp 99.8 1.6E-18 5.4E-23 131.3 8.1 80 4-83 45-127 (135)
142 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.4E-18 1.2E-22 130.4 9.9 77 4-80 61-140 (140)
143 2cq4_A RNA binding motif prote 99.8 2.8E-18 9.5E-23 126.2 9.1 78 5-83 24-104 (114)
144 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.1E-18 3.8E-23 119.0 6.4 73 7-80 1-76 (77)
145 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1E-18 3.6E-23 125.4 6.5 78 4-83 17-98 (100)
146 2ki2_A SS-DNA binding protein 99.8 7E-19 2.4E-23 123.8 5.3 76 7-83 2-80 (90)
147 1wg1_A KIAA1579 protein, homol 99.8 2.1E-18 7.3E-23 120.8 7.7 77 3-83 2-78 (88)
148 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.2E-18 1.1E-22 134.3 9.4 81 4-84 70-153 (165)
149 2jwn_A Embryonic polyadenylate 99.7 7.2E-18 2.5E-22 125.9 10.6 78 5-83 35-115 (124)
150 3beg_B Splicing factor, argini 99.7 5.7E-18 1.9E-22 124.7 9.8 76 4-83 14-94 (115)
151 1x4b_A Heterogeneous nuclear r 99.7 6E-18 2E-22 124.8 9.9 78 5-83 26-106 (116)
152 1x5o_A RNA binding motif, sing 99.7 5.7E-18 1.9E-22 124.6 9.7 80 4-83 23-112 (114)
153 2i2y_A Fusion protein consists 99.7 6E-18 2.1E-22 130.6 10.2 78 4-83 71-148 (150)
154 1wg5_A Heterogeneous nuclear r 99.7 8.6E-18 2.9E-22 121.5 10.4 79 4-83 13-94 (104)
155 2diu_A KIAA0430 protein; struc 99.7 7.1E-18 2.4E-22 116.4 9.2 73 4-83 6-84 (96)
156 1x5p_A Negative elongation fac 99.7 1.5E-17 5.1E-22 118.7 11.2 75 4-83 13-87 (97)
157 2e44_A Insulin-like growth fac 99.7 1E-17 3.6E-22 119.2 10.3 79 4-83 13-92 (96)
158 1fj7_A Nucleolin RBD1, protein 99.7 1.1E-18 3.9E-23 125.5 5.2 79 4-83 15-95 (101)
159 2e5g_A U6 snRNA-specific termi 99.7 1.4E-17 4.8E-22 118.1 10.5 77 4-83 6-82 (94)
160 2cpy_A RNA-binding protein 12; 99.7 3.4E-18 1.2E-22 125.7 7.5 79 4-83 13-94 (114)
161 1wez_A HnRNP H', FTP-3, hetero 99.7 3.6E-18 1.2E-22 122.9 7.4 78 4-83 13-92 (102)
162 2db1_A Heterogeneous nuclear r 99.7 2.8E-18 9.7E-23 126.9 7.0 78 4-82 15-97 (118)
163 2f3j_A RNA and export factor b 99.7 9.8E-18 3.4E-22 132.7 10.0 80 4-83 86-167 (177)
164 1iqt_A AUF1, heterogeneous nuc 99.7 2.7E-18 9.2E-23 116.5 5.9 72 8-80 1-75 (75)
165 1sjr_A Polypyrimidine tract-bi 99.7 3.1E-17 1.1E-21 126.4 12.5 76 7-83 47-124 (164)
166 2hgl_A HNRPF protein, heteroge 99.7 4.1E-18 1.4E-22 128.6 7.0 78 4-82 42-124 (136)
167 1wel_A RNA-binding protein 12; 99.7 7.7E-18 2.6E-22 125.7 7.4 79 4-83 23-104 (124)
168 2hzc_A Splicing factor U2AF 65 99.7 1.7E-17 6E-22 115.8 8.7 73 3-79 3-86 (87)
169 3q2s_C Cleavage and polyadenyl 99.7 9.8E-18 3.4E-22 138.2 8.5 78 5-82 67-149 (229)
170 3zzy_A Polypyrimidine tract-bi 99.7 3.1E-17 1E-21 121.9 10.1 74 8-83 30-106 (130)
171 2dnn_A RNA-binding protein 12; 99.7 2.3E-17 8E-22 119.7 9.2 75 6-82 16-92 (109)
172 2lmi_A GRSF-1, G-rich sequence 99.7 6.4E-18 2.2E-22 122.8 5.7 78 4-82 9-91 (107)
173 2lcw_A RNA-binding protein FUS 99.6 5.6E-19 1.9E-23 130.4 0.0 80 4-83 5-95 (116)
174 2e5i_A Heterogeneous nuclear r 99.7 6.3E-17 2.2E-21 119.7 10.5 76 5-83 22-102 (124)
175 2dha_A FLJ20171 protein; RRM d 99.7 1.2E-17 3.9E-22 123.9 6.3 79 3-82 20-104 (123)
176 2pe8_A Splicing factor 45; RRM 99.7 7.8E-17 2.7E-21 116.2 10.3 81 2-82 4-93 (105)
177 3d2w_A TAR DNA-binding protein 99.7 5.3E-17 1.8E-21 113.7 9.1 74 4-83 9-84 (89)
178 2hgn_A Heterogeneous nuclear r 99.7 7.9E-18 2.7E-22 127.4 4.9 78 4-83 44-123 (139)
179 1wf0_A TDP-43, TAR DNA-binding 99.7 1.9E-17 6.4E-22 115.9 6.4 77 3-83 2-78 (88)
180 2lea_A Serine/arginine-rich sp 99.7 4.9E-17 1.7E-21 123.0 9.1 121 46-206 5-129 (135)
181 2bz2_A Negative elongation fac 99.7 8.4E-17 2.9E-21 119.3 9.9 75 4-83 37-111 (121)
182 2hgm_A HNRPF protein, heteroge 99.7 3.1E-17 1E-21 121.9 7.5 77 4-82 40-120 (126)
183 2xs2_A Deleted in azoospermia- 99.7 2.7E-17 9.2E-22 118.4 6.1 78 4-83 7-86 (102)
184 1x4a_A Splicing factor, argini 99.7 8.3E-16 2.8E-20 111.9 13.7 84 118-205 16-100 (109)
185 2cpz_A CUG triplet repeat RNA- 99.7 7.8E-16 2.7E-20 113.2 13.4 85 118-206 19-107 (115)
186 4fxv_A ELAV-like protein 1; RN 99.7 2.1E-16 7.3E-21 112.9 9.8 76 123-202 18-97 (99)
187 2dnl_A Cytoplasmic polyadenyla 99.7 2.3E-16 8E-21 115.8 10.2 74 4-80 6-85 (114)
188 2jvr_A Nucleolar protein 3; RN 99.7 1.1E-16 3.9E-21 116.3 8.3 82 121-206 25-107 (111)
189 3ex7_B RNA-binding protein 8A; 99.7 2E-16 7E-21 118.3 9.8 83 120-206 18-104 (126)
190 2fy1_A RNA-binding motif prote 99.7 8.3E-16 2.8E-20 113.2 12.8 79 123-205 6-87 (116)
191 4f02_A Polyadenylate-binding p 99.7 1.7E-16 5.8E-21 129.7 10.1 79 5-83 102-181 (213)
192 3md3_A Nuclear and cytoplasmic 99.7 2.2E-16 7.6E-21 123.4 10.3 78 4-81 85-165 (166)
193 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2E-16 7E-21 124.0 10.0 138 50-206 11-154 (165)
194 2qfj_A FBP-interacting repress 99.7 3.3E-16 1.1E-20 128.0 11.2 80 4-83 123-205 (216)
195 2j8a_A Histone-lysine N-methyl 99.7 1.4E-16 4.8E-21 116.2 7.2 77 7-83 3-96 (136)
196 3u1l_A PRE-mRNA-splicing facto 99.7 3.2E-16 1.1E-20 128.8 9.6 77 4-83 132-229 (240)
197 2g4b_A Splicing factor U2AF 65 99.6 3.6E-16 1.2E-20 123.1 9.0 77 5-81 93-172 (172)
198 2dgo_A Cytotoxic granule-assoc 99.6 5.4E-15 1.8E-19 108.7 14.6 84 120-207 11-98 (115)
199 2yh0_A Splicing factor U2AF 65 99.6 6.1E-16 2.1E-20 124.7 10.2 80 4-83 112-194 (198)
200 1fje_B Nucleolin RBD12, protei 99.6 3.1E-16 1.1E-20 123.9 8.3 78 4-83 97-174 (175)
201 2dit_A HIV TAT specific factor 99.6 9.2E-16 3.1E-20 112.3 9.9 79 4-83 13-102 (112)
202 2cqi_A Nucleolysin TIAR; RNA r 99.6 4E-15 1.4E-19 107.1 13.2 83 120-206 11-95 (103)
203 2do4_A Squamous cell carcinoma 99.6 4.2E-15 1.4E-19 106.4 12.9 83 120-206 13-98 (100)
204 2cq0_A Eukaryotic translation 99.6 2.4E-15 8.2E-20 108.3 11.5 83 121-207 12-98 (103)
205 3s8s_A Histone-lysine N-methyl 99.6 1.3E-15 4.5E-20 110.9 10.2 78 123-204 5-86 (110)
206 2e5j_A Methenyltetrahydrofolat 99.6 2.9E-15 9.9E-20 106.7 11.8 81 120-205 15-95 (97)
207 2do0_A HnRNP M, heterogeneous 99.6 7E-15 2.4E-19 107.9 14.2 82 121-206 12-96 (114)
208 2d9p_A Polyadenylate-binding p 99.6 3.3E-15 1.1E-19 107.6 12.0 83 120-206 11-95 (103)
209 2cjk_A Nuclear polyadenylated 99.6 4.1E-16 1.4E-20 122.2 7.8 78 5-83 86-166 (167)
210 1b7f_A Protein (SXL-lethal pro 99.6 1.2E-15 4.2E-20 119.5 10.2 77 4-80 87-168 (168)
211 2wbr_A GW182, gawky, LD47780P; 99.6 1.9E-15 6.4E-20 103.4 9.6 72 124-201 7-78 (89)
212 2dnm_A SRP46 splicing factor; 99.6 3.4E-15 1.2E-19 107.5 11.7 83 120-206 9-95 (103)
213 4f25_A Polyadenylate-binding p 99.6 1.4E-15 4.8E-20 111.8 9.7 77 124-204 5-83 (115)
214 1sjq_A Polypyrimidine tract-bi 99.6 1.9E-15 6.6E-20 108.1 10.1 76 123-204 15-92 (105)
215 1l3k_A Heterogeneous nuclear r 99.6 1.2E-15 4E-20 122.8 10.1 79 5-84 103-184 (196)
216 3nmr_A Cugbp ELAV-like family 99.6 1.1E-15 3.7E-20 120.6 9.6 77 5-81 94-175 (175)
217 2e5h_A Zinc finger CCHC-type a 99.6 2.9E-15 9.8E-20 106.0 10.8 78 121-202 13-94 (94)
218 2cq3_A RNA-binding protein 9; 99.6 8.1E-15 2.8E-19 105.5 13.2 83 120-206 11-95 (103)
219 2dnh_A Bruno-like 5, RNA bindi 99.6 7.6E-15 2.6E-19 106.0 13.1 82 122-207 13-100 (105)
220 1x5s_A Cold-inducible RNA-bind 99.6 4.1E-15 1.4E-19 106.9 11.1 80 122-205 10-93 (102)
221 1x5u_A Splicing factor 3B subu 99.6 8.4E-15 2.9E-19 105.8 12.8 82 120-205 11-96 (105)
222 2cqc_A Arginine/serine-rich sp 99.6 5.8E-15 2E-19 104.6 11.5 80 120-203 11-94 (95)
223 1whw_A Hypothetical protein ri 99.6 7.2E-15 2.5E-19 105.0 12.1 82 122-207 6-91 (99)
224 2dgs_A DAZ-associated protein 99.6 8.3E-15 2.8E-19 104.7 12.4 81 121-206 7-91 (99)
225 2voo_A Lupus LA protein; RNA-b 99.6 1.9E-15 6.4E-20 121.3 9.9 77 6-83 109-187 (193)
226 2dnz_A Probable RNA-binding pr 99.6 8.2E-15 2.8E-19 103.8 12.2 80 123-206 4-87 (95)
227 2ywk_A Putative RNA-binding pr 99.6 3.7E-15 1.3E-19 105.6 10.4 80 120-203 12-94 (95)
228 2kxn_B Transformer-2 protein h 99.6 3.9E-15 1.3E-19 111.6 11.0 82 120-205 42-127 (129)
229 1x4h_A RNA-binding protein 28; 99.6 1E-14 3.5E-19 106.4 13.0 83 120-206 11-103 (111)
230 2cph_A RNA binding motif prote 99.6 1E-14 3.6E-19 105.7 12.8 84 119-206 10-99 (107)
231 1fxl_A Paraneoplastic encephal 99.6 2.1E-15 7.2E-20 117.9 9.8 76 5-80 87-167 (167)
232 2dgx_A KIAA0430 protein; RRM d 99.6 5.2E-15 1.8E-19 105.1 10.8 81 122-206 7-92 (96)
233 3bs9_A Nucleolysin TIA-1 isofo 99.6 3.2E-15 1.1E-19 104.1 9.4 79 122-204 4-86 (87)
234 3r27_A HnRNP L, heterogeneous 99.6 3.2E-15 1.1E-19 105.9 9.4 76 122-203 19-96 (100)
235 3v4m_A Splicing factor U2AF 65 99.6 2.4E-15 8.1E-20 108.4 8.9 79 3-81 2-95 (105)
236 1x4d_A Matrin 3; structural ge 99.6 2.3E-15 7.8E-20 107.6 8.5 76 122-203 13-91 (102)
237 1wex_A Hypothetical protein (r 99.6 9.7E-15 3.3E-19 105.0 11.8 79 121-205 12-92 (104)
238 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.8E-15 1.6E-19 102.8 9.6 77 122-202 5-85 (85)
239 2dnq_A RNA-binding protein 4B; 99.6 1.3E-14 4.6E-19 101.7 12.0 77 122-206 6-82 (90)
240 2cqb_A Peptidyl-prolyl CIS-tra 99.6 4.8E-15 1.6E-19 106.5 9.9 81 122-206 10-94 (102)
241 2dng_A Eukaryotic translation 99.6 1.3E-14 4.6E-19 104.4 12.2 82 119-206 10-95 (103)
242 3pgw_A U1-A; protein-RNA compl 99.6 3.6E-15 1.2E-19 127.0 10.7 75 5-81 206-281 (282)
243 1wi8_A EIF-4B, eukaryotic tran 99.6 9E-15 3.1E-19 105.5 11.2 83 119-207 10-97 (104)
244 4a8x_A RNA-binding protein wit 99.6 4.3E-15 1.5E-19 103.7 9.2 78 124-205 4-86 (88)
245 1x5t_A Splicing factor 3B subu 99.6 4.9E-15 1.7E-19 105.2 9.6 80 123-206 4-88 (96)
246 2dhg_A TRNA selenocysteine ass 99.6 2.2E-14 7.4E-19 103.4 13.0 82 121-206 6-92 (104)
247 2dgp_A Bruno-like 4, RNA bindi 99.6 1.3E-14 4.5E-19 105.0 11.9 82 121-206 10-98 (106)
248 2hvz_A Splicing factor, argini 99.6 6.3E-15 2.1E-19 105.7 10.0 76 125-205 1-76 (101)
249 1qm9_A Polypyrimidine tract-bi 99.6 2.9E-15 1E-19 120.8 9.1 78 4-83 118-197 (198)
250 2ad9_A Polypyrimidine tract-bi 99.6 6.5E-15 2.2E-19 108.0 10.0 80 120-205 27-108 (119)
251 2dgu_A Heterogeneous nuclear r 99.6 2E-14 7E-19 103.4 12.5 77 123-207 10-86 (103)
252 1p27_B RNA-binding protein 8A; 99.6 9.8E-15 3.4E-19 105.6 10.7 80 121-204 20-103 (106)
253 3md1_A Nuclear and cytoplasmic 99.6 9.1E-15 3.1E-19 100.8 10.0 76 125-204 2-81 (83)
254 2cq1_A PTB-like protein L; RRM 99.6 1.1E-14 3.8E-19 104.1 10.6 79 120-204 11-91 (101)
255 2la6_A RNA-binding protein FUS 99.6 1.3E-14 4.6E-19 103.6 11.1 80 119-202 8-99 (99)
256 2dgv_A HnRNP M, heterogeneous 99.6 1.5E-14 5.2E-19 101.8 11.3 80 122-205 6-87 (92)
257 2adc_A Polypyrimidine tract-bi 99.6 6.6E-15 2.3E-19 121.6 10.8 78 4-83 149-228 (229)
258 2lxi_A RNA-binding protein 10; 99.6 2.1E-15 7.1E-20 106.0 6.6 77 125-205 2-84 (91)
259 1x4f_A Matrin 3; structural ge 99.6 5.7E-15 2E-19 107.1 9.1 78 120-203 21-101 (112)
260 2dnp_A RNA-binding protein 14; 99.6 1.4E-14 4.8E-19 101.5 10.9 77 122-206 7-83 (90)
261 2cpf_A RNA binding motif prote 99.6 1.1E-14 3.6E-19 103.9 10.3 79 123-205 4-89 (98)
262 2jrs_A RNA-binding protein 39; 99.6 2.4E-14 8.3E-19 103.9 12.3 82 119-204 21-106 (108)
263 2cpj_A Non-POU domain-containi 99.6 1.9E-14 6.4E-19 102.8 11.6 79 121-205 12-90 (99)
264 1wf1_A RNA-binding protein RAL 99.6 3.2E-14 1.1E-18 103.7 13.0 76 122-205 25-101 (110)
265 1u6f_A Tcubp1, RNA-binding pro 99.6 3.7E-14 1.3E-18 107.8 13.8 83 120-206 38-124 (139)
266 2ytc_A PRE-mRNA-splicing facto 99.6 1.2E-14 4.2E-19 100.7 10.2 76 121-202 9-85 (85)
267 2dgt_A RNA-binding protein 30; 99.6 2E-14 6.7E-19 101.3 11.1 78 121-206 7-84 (92)
268 1why_A Hypothetical protein ri 99.6 3.6E-14 1.2E-18 100.9 12.5 81 122-206 15-95 (97)
269 1x4g_A Nucleolysin TIAR; struc 99.6 2.1E-14 7.3E-19 104.4 11.6 79 122-206 23-101 (109)
270 2cqd_A RNA-binding region cont 99.6 5.2E-14 1.8E-18 103.5 13.8 79 120-203 13-95 (116)
271 3tyt_A Heterogeneous nuclear r 99.6 3.5E-15 1.2E-19 120.9 8.1 77 4-80 121-204 (205)
272 2x1f_A MRNA 3'-END-processing 99.6 1E-14 3.6E-19 103.5 9.6 78 123-204 1-82 (96)
273 2e44_A Insulin-like growth fac 99.6 1.8E-14 6.3E-19 102.2 10.7 80 121-204 12-92 (96)
274 2khc_A Testis-specific RNP-typ 99.6 2.6E-14 9E-19 105.5 11.9 79 119-201 35-117 (118)
275 2dh8_A DAZ-associated protein 99.6 2.7E-14 9.2E-19 103.1 11.6 80 121-205 13-96 (105)
276 2cpd_A Apobec-1 stimulating pr 99.6 4.4E-14 1.5E-18 100.8 12.6 77 121-205 12-90 (99)
277 2div_A TRNA selenocysteine ass 99.6 2.1E-14 7.2E-19 102.5 10.9 79 122-204 7-94 (99)
278 2cpe_A RNA-binding protein EWS 99.6 2E-14 6.7E-19 105.3 10.8 82 121-206 12-105 (113)
279 2jvo_A Nucleolar protein 3; nu 99.6 1.2E-14 4.1E-19 105.5 9.4 79 121-207 28-106 (108)
280 3p5t_L Cleavage and polyadenyl 99.6 5E-15 1.7E-19 103.9 7.1 77 125-205 2-84 (90)
281 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-14 4.2E-19 105.9 9.3 81 121-205 23-107 (110)
282 2cpx_A Hypothetical protein FL 99.6 7.2E-14 2.5E-18 102.6 13.2 82 122-207 23-108 (115)
283 2lkz_A RNA-binding protein 5; 99.6 6.3E-15 2.1E-19 104.2 7.1 81 123-203 8-94 (95)
284 2cpi_A CCR4-NOT transcription 99.6 2.1E-14 7.1E-19 104.8 10.1 80 122-205 13-102 (111)
285 3ulh_A THO complex subunit 4; 99.6 1.9E-14 6.5E-19 104.3 9.9 79 120-202 25-106 (107)
286 2hgl_A HNRPF protein, heteroge 99.6 9.4E-15 3.2E-19 110.2 8.1 80 118-202 38-123 (136)
287 3tht_A Alkylated DNA repair pr 99.6 1.2E-14 4E-19 125.7 9.5 77 2-81 14-97 (345)
288 2d9o_A DNAJ (HSP40) homolog, s 99.5 7.4E-14 2.5E-18 99.3 12.0 77 4-84 8-91 (100)
289 3ue2_A Poly(U)-binding-splicin 99.5 4.6E-15 1.6E-19 109.0 5.9 78 4-81 18-107 (118)
290 2err_A Ataxin-2-binding protei 99.5 1.8E-14 6.1E-19 104.8 8.9 79 121-203 26-106 (109)
291 1x5o_A RNA binding motif, sing 99.5 1.1E-13 3.7E-18 101.5 13.1 82 121-202 22-110 (114)
292 3ns6_A Eukaryotic translation 99.5 1.1E-14 3.7E-19 104.2 7.5 76 123-202 5-91 (100)
293 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 7.5E-14 2.6E-18 106.1 12.7 78 120-201 59-140 (140)
294 1s79_A Lupus LA protein; RRM, 99.5 2.7E-14 9.3E-19 102.5 9.5 75 122-201 9-86 (103)
295 1h2v_Z 20 kDa nuclear CAP bind 99.5 4.9E-14 1.7E-18 109.3 11.5 79 122-204 37-119 (156)
296 2cqp_A RNA-binding protein 12; 99.5 2.1E-14 7.1E-19 102.4 8.4 79 122-204 13-95 (98)
297 3lqv_A PRE-mRNA branch site pr 99.5 5.1E-14 1.7E-18 103.4 10.6 78 122-203 6-84 (115)
298 2a3j_A U1 small nuclear ribonu 99.5 5.7E-14 2E-18 104.6 10.9 79 122-204 27-110 (127)
299 1sjr_A Polypyrimidine tract-bi 99.5 6.3E-14 2.2E-18 107.9 11.4 79 124-204 46-124 (164)
300 2fc9_A NCL protein; structure 99.5 3.4E-14 1.2E-18 101.8 9.3 77 121-204 12-91 (101)
301 1whx_A Hypothetical protein ri 99.5 1.8E-14 6.1E-19 105.1 7.9 75 123-203 9-83 (111)
302 2kvi_A Nuclear polyadenylated 99.5 2.6E-14 8.8E-19 101.5 8.5 75 122-204 8-83 (96)
303 1x4e_A RNA binding motif, sing 99.5 1.1E-14 3.6E-19 101.0 6.4 75 123-201 4-82 (85)
304 2xnq_A Nuclear polyadenylated 99.5 5.1E-14 1.8E-18 100.1 10.0 76 120-203 18-94 (97)
305 1wg5_A Heterogeneous nuclear r 99.5 6.3E-14 2.2E-18 101.0 10.6 78 121-203 12-93 (104)
306 2db1_A Heterogeneous nuclear r 99.5 2.2E-14 7.5E-19 105.8 8.3 79 119-202 12-96 (118)
307 2hgn_A Heterogeneous nuclear r 99.5 6.6E-15 2.3E-19 111.3 5.6 78 121-204 43-123 (139)
308 2dgw_A Probable RNA-binding pr 99.5 7.2E-14 2.5E-18 98.1 10.4 79 121-205 7-88 (91)
309 3ucg_A Polyadenylate-binding p 99.5 5.8E-14 2E-18 98.1 9.9 75 124-203 6-84 (89)
310 2cq2_A Hypothetical protein LO 99.5 3E-14 1E-18 103.3 8.5 82 122-205 23-107 (114)
311 1jmt_A Splicing factor U2AF 35 99.5 5.3E-15 1.8E-19 106.4 4.5 69 12-80 21-103 (104)
312 1wez_A HnRNP H', FTP-3, hetero 99.5 8.6E-14 3E-18 99.8 10.8 77 121-203 12-91 (102)
313 1x4b_A Heterogeneous nuclear r 99.5 7.6E-14 2.6E-18 102.6 10.7 80 122-206 25-108 (116)
314 2cq4_A RNA binding motif prote 99.5 5E-14 1.7E-18 103.3 9.4 76 122-202 23-102 (114)
315 1p1t_A Cleavage stimulation fa 99.5 3.4E-14 1.2E-18 102.4 8.3 79 123-205 7-89 (104)
316 2cqg_A TDP-43, TAR DNA-binding 99.5 2.9E-13 1E-17 97.3 13.2 80 120-205 11-94 (103)
317 2m2b_A RNA-binding protein 10; 99.5 6.9E-14 2.4E-18 105.2 10.2 78 122-204 21-108 (131)
318 3n9u_C Cleavage and polyadenyl 99.5 6E-14 2.1E-18 108.5 10.1 76 123-202 54-135 (156)
319 1wel_A RNA-binding protein 12; 99.5 3.3E-14 1.1E-18 105.9 8.3 78 120-202 21-102 (124)
320 3s7r_A Heterogeneous nuclear r 99.5 9E-14 3.1E-18 96.7 10.0 75 122-201 9-87 (87)
321 2jwn_A Embryonic polyadenylate 99.5 6.6E-14 2.3E-18 104.2 9.9 77 123-204 35-115 (124)
322 2kt5_A RNA and export factor-b 99.5 4.5E-13 1.5E-17 99.7 14.4 80 120-203 31-113 (124)
323 1x5p_A Negative elongation fac 99.5 2.6E-13 9E-18 96.4 12.5 77 122-206 13-89 (97)
324 2la4_A Nuclear and cytoplasmic 99.5 6.1E-14 2.1E-18 100.5 9.2 75 122-202 25-99 (101)
325 2cqh_A IGF-II mRNA-binding pro 99.5 7.6E-14 2.6E-18 98.4 9.1 78 123-207 7-86 (93)
326 2dnn_A RNA-binding protein 12; 99.5 5.6E-14 1.9E-18 101.8 8.6 75 122-202 14-91 (109)
327 2e5i_A Heterogeneous nuclear r 99.5 5.2E-13 1.8E-17 98.6 13.7 76 125-204 26-102 (124)
328 2krb_A Eukaryotic translation 99.5 4E-14 1.4E-18 97.2 7.3 70 125-198 2-80 (81)
329 2diu_A KIAA0430 protein; struc 99.5 1.3E-13 4.5E-18 95.1 9.7 72 124-205 8-85 (96)
330 2ek1_A RNA-binding protein 12; 99.5 2.4E-14 8.2E-19 101.4 6.2 76 123-202 14-93 (95)
331 2mss_A Protein (musashi1); RNA 99.5 4.7E-14 1.6E-18 95.3 7.3 71 126-201 1-75 (75)
332 2nlw_A Eukaryotic translation 99.5 1.1E-13 3.9E-18 99.8 9.8 76 123-202 14-98 (105)
333 2j76_E EIF-4B, EIF4B, eukaryot 99.5 4.8E-14 1.6E-18 100.9 7.2 78 120-203 15-97 (100)
334 2rs2_A Musashi-1, RNA-binding 99.5 1.4E-13 4.8E-18 100.0 9.7 80 122-206 23-106 (109)
335 2dis_A Unnamed protein product 99.5 3.6E-13 1.2E-17 97.8 11.8 79 123-205 7-93 (109)
336 2e5g_A U6 snRNA-specific termi 99.5 2.9E-13 1E-17 95.6 10.9 74 123-203 7-81 (94)
337 3s6e_A RNA-binding protein 39; 99.5 1.3E-13 4.4E-18 100.5 9.2 77 4-81 5-91 (114)
338 3sde_A Paraspeckle component 1 99.5 1.2E-13 4.1E-18 116.3 10.1 80 4-83 94-179 (261)
339 1uaw_A Mouse-musashi-1; RNP-ty 99.5 7.9E-14 2.7E-18 94.6 7.4 72 125-201 1-76 (77)
340 2cpy_A RNA-binding protein 12; 99.5 8.4E-14 2.9E-18 102.1 7.7 77 122-203 13-93 (114)
341 1nu4_A U1A RNA binding domain; 99.5 6E-14 2.1E-18 99.7 6.6 81 121-205 5-90 (97)
342 2fc8_A NCL protein; structure 99.5 2.9E-13 9.8E-18 97.1 9.9 79 121-206 12-94 (102)
343 2lmi_A GRSF-1, G-rich sequence 99.5 8.3E-14 2.8E-18 100.9 7.0 77 121-202 8-90 (107)
344 1fj7_A Nucleolin RBD1, protein 99.5 5.9E-14 2E-18 100.5 5.8 78 122-205 15-96 (101)
345 3zzy_A Polypyrimidine tract-bi 99.5 2E-13 6.7E-18 101.3 8.7 78 124-204 28-106 (130)
346 1fjc_A Nucleolin RBD2, protein 99.5 1.1E-13 3.6E-18 98.2 6.9 78 121-203 13-90 (96)
347 2ki2_A SS-DNA binding protein 99.5 6.3E-14 2.1E-18 98.2 5.4 75 125-204 2-80 (90)
348 2hgm_A HNRPF protein, heteroge 99.5 2.1E-13 7.1E-18 101.2 8.4 76 121-202 39-119 (126)
349 3q2s_C Cleavage and polyadenyl 99.5 2.4E-13 8.3E-18 111.9 9.7 76 123-202 67-148 (229)
350 2dha_A FLJ20171 protein; RRM d 99.4 4.5E-14 1.5E-18 104.5 4.5 77 121-202 20-103 (123)
351 2hzc_A Splicing factor U2AF 65 99.4 3.6E-13 1.2E-17 93.6 8.6 70 123-199 5-85 (87)
352 2f3j_A RNA and export factor b 99.4 4.7E-13 1.6E-17 105.7 9.9 78 121-202 85-165 (177)
353 1wg1_A KIAA1579 protein, homol 99.4 1.8E-13 6.3E-18 95.4 6.6 75 123-204 4-78 (88)
354 1iqt_A AUF1, heterogeneous nuc 99.4 2.1E-13 7.1E-18 92.0 6.2 71 126-201 1-75 (75)
355 3egn_A RNA-binding protein 40; 99.4 4.5E-13 1.5E-17 102.3 8.4 81 122-206 43-132 (143)
356 2bz2_A Negative elongation fac 99.4 7.5E-13 2.6E-17 97.9 9.2 77 122-206 37-113 (121)
357 3d2w_A TAR DNA-binding protein 99.4 8.9E-13 3E-17 92.0 8.0 77 120-203 7-83 (89)
358 2lcw_A RNA-binding protein FUS 99.1 2.8E-14 9.5E-19 105.0 0.0 82 122-207 5-98 (116)
359 2xs2_A Deleted in azoospermia- 99.4 8E-13 2.8E-17 94.7 7.0 75 122-202 7-84 (102)
360 1wf0_A TDP-43, TAR DNA-binding 99.4 9.8E-13 3.3E-17 91.6 6.1 76 123-205 4-79 (88)
361 2voo_A Lupus LA protein; RNA-b 99.4 9.4E-12 3.2E-16 99.7 12.4 75 123-202 108-185 (193)
362 3u1l_A PRE-mRNA-splicing facto 99.3 1.9E-12 6.4E-17 106.3 8.3 83 122-206 132-231 (240)
363 2j8a_A Histone-lysine N-methyl 99.3 2.9E-12 1E-16 93.5 8.1 75 125-203 3-95 (136)
364 1owx_A Lupus LA protein, SS-B, 99.3 5.8E-12 2E-16 91.9 9.1 75 4-81 16-94 (121)
365 2dit_A HIV TAT specific factor 99.3 2E-11 6.9E-16 89.0 11.7 79 122-204 13-102 (112)
366 2pe8_A Splicing factor 45; RRM 99.3 9.7E-12 3.3E-16 89.4 9.6 77 122-202 6-92 (105)
367 2dnl_A Cytoplasmic polyadenyla 99.3 1.3E-11 4.5E-16 90.3 10.4 64 123-187 7-80 (114)
368 2dnr_A Synaptojanin-1; RRM dom 99.2 2.9E-11 1E-15 82.6 7.5 74 4-83 5-86 (91)
369 3v4m_A Splicing factor U2AF 65 99.2 3.1E-11 1E-15 86.8 7.3 76 123-202 4-95 (105)
370 3ue2_A Poly(U)-binding-splicin 99.2 8.3E-11 2.8E-15 86.2 7.4 76 123-202 19-107 (118)
371 3s6e_A RNA-binding protein 39; 99.2 1.2E-10 4E-15 84.8 8.1 77 122-202 5-91 (114)
372 3tht_A Alkylated DNA repair pr 99.1 1.1E-10 3.8E-15 100.9 7.8 81 119-202 13-97 (345)
373 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.9E-09 6.5E-14 76.4 12.7 65 134-205 27-91 (100)
374 1jmt_A Splicing factor U2AF 35 99.1 3.3E-11 1.1E-15 86.4 3.2 69 129-201 20-103 (104)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 1.8E-10 6.3E-15 79.0 5.4 72 4-81 13-93 (95)
376 1owx_A Lupus LA protein, SS-B, 99.0 2.9E-09 9.9E-14 77.6 9.0 76 119-200 13-92 (121)
377 3dxb_A Thioredoxin N-terminall 98.9 2.8E-09 9.7E-14 87.2 8.2 77 5-81 123-211 (222)
378 2dnr_A Synaptojanin-1; RRM dom 98.8 9.7E-09 3.3E-13 70.2 7.2 71 123-202 6-84 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.8 3.4E-08 1.2E-12 69.1 9.1 72 5-79 20-96 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 2.4E-08 8.3E-13 68.5 4.8 70 123-201 14-92 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.6 1.4E-06 4.7E-11 60.5 11.6 74 4-83 6-84 (104)
382 1wey_A Calcipressin 1; structu 98.4 2.2E-06 7.5E-11 59.8 9.4 78 3-83 2-84 (104)
383 3dxb_A Thioredoxin N-terminall 98.4 7.4E-07 2.5E-11 72.7 7.6 63 136-202 141-211 (222)
384 2l9w_A U4/U6 snRNA-associated- 98.3 3.9E-06 1.3E-10 58.7 8.4 72 123-200 20-96 (117)
385 1wwh_A Nucleoporin 35, nucleop 98.0 4.4E-05 1.5E-09 54.8 8.4 71 6-81 24-95 (119)
386 1uw4_A UPF3X; nonsense mediate 97.9 3.1E-05 1.1E-09 53.1 7.1 66 7-72 2-72 (91)
387 1whv_A Poly(A)-specific ribonu 97.9 3.5E-05 1.2E-09 52.8 6.8 54 6-65 16-69 (100)
388 3ctr_A Poly(A)-specific ribonu 97.7 4.4E-05 1.5E-09 52.5 4.9 54 7-66 7-60 (101)
389 1wey_A Calcipressin 1; structu 97.5 0.0004 1.4E-08 48.4 7.1 72 125-202 6-82 (104)
390 3p3d_A Nucleoporin 53; structu 97.3 0.00057 1.9E-08 49.7 6.3 76 4-81 5-97 (132)
391 2l08_A Regulator of nonsense t 97.2 0.00027 9.1E-09 48.7 3.8 67 5-71 8-79 (97)
392 1uw4_A UPF3X; nonsense mediate 97.1 0.0032 1.1E-07 43.0 7.9 64 125-188 2-71 (91)
393 2dhx_A Poly (ADP-ribose) polym 97.0 0.0042 1.4E-07 43.1 7.8 70 123-201 7-81 (104)
394 3pq1_A Poly(A) RNA polymerase; 96.9 0.00053 1.8E-08 61.3 3.6 56 5-63 52-107 (464)
395 1whv_A Poly(A)-specific ribonu 96.8 0.0068 2.3E-07 41.5 7.9 54 125-183 17-70 (100)
396 1wwh_A Nucleoporin 35, nucleop 96.8 0.006 2.1E-07 43.7 7.8 73 122-201 22-94 (119)
397 3ctr_A Poly(A)-specific ribonu 96.6 0.0049 1.7E-07 42.4 5.7 53 126-183 8-60 (101)
398 2l08_A Regulator of nonsense t 95.8 0.012 4.1E-07 40.5 4.4 64 125-188 10-79 (97)
399 3pq1_A Poly(A) RNA polymerase; 94.9 0.019 6.5E-07 51.3 4.0 56 124-181 53-108 (464)
400 3p3d_A Nucleoporin 53; structu 94.9 0.03 1E-06 40.7 4.2 73 124-202 7-97 (132)
401 3d45_A Poly(A)-specific ribonu 92.4 0.26 8.9E-06 44.8 6.8 55 6-66 440-494 (507)
402 2g0c_A ATP-dependent RNA helic 89.4 1.7 5.8E-05 28.0 6.9 68 8-81 2-75 (76)
403 4eyt_A Telomerase associated p 85.0 6.5 0.00022 26.1 8.3 69 4-79 10-78 (129)
404 3d45_A Poly(A)-specific ribonu 74.8 8.1 0.00028 35.0 7.4 55 125-184 441-495 (507)
405 4eyt_A Telomerase associated p 73.7 17 0.00058 24.1 7.5 58 123-184 11-68 (129)
406 3j21_T 50S ribosomal protein L 73.6 15 0.00052 24.3 6.6 58 8-65 24-83 (86)
407 4e8u_A Putative uncharacterize 69.9 6.7 0.00023 29.8 4.7 56 8-63 14-81 (172)
408 1vq8_S 50S ribosomal protein L 66.5 18 0.0006 24.0 5.7 55 9-63 24-80 (85)
409 4a17_R RPL23A, 60S ribosomal p 53.3 41 0.0014 24.7 6.2 57 9-65 89-147 (150)
410 3lpe_A Putative transcription 52.5 48 0.0017 22.0 6.5 43 23-67 29-72 (92)
411 3u5e_X 60S ribosomal protein L 50.9 47 0.0016 24.2 6.2 57 9-65 81-139 (142)
412 2zkr_s 60S ribosomal protein L 49.3 50 0.0017 24.5 6.2 56 9-64 95-152 (156)
413 3iz5_X 60S ribosomal protein L 45.1 41 0.0014 24.8 5.2 55 9-63 91-147 (152)
414 2e5p_A Protein PHF1, PHD finge 42.6 10 0.00036 23.6 1.4 20 31-55 28-47 (68)
415 3fry_A Probable copper-exporti 41.6 58 0.002 19.8 6.2 56 6-65 6-61 (73)
416 3ts2_A Protein LIN-28 homolog 41.4 3.4 0.00012 30.6 -1.1 29 21-54 2-30 (148)
417 3j21_T 50S ribosomal protein L 38.3 84 0.0029 20.7 7.2 57 126-182 24-83 (86)
418 2m0o_A PHD finger protein 1; t 34.2 17 0.00057 23.3 1.4 21 31-56 45-65 (79)
419 2eqj_A Metal-response element- 34.0 18 0.0006 22.6 1.4 12 44-55 40-51 (66)
420 2vog_B BCL-2-modifying factor; 33.2 19 0.00066 17.6 1.2 17 274-290 3-20 (27)
421 3fut_A Dimethyladenosine trans 32.3 41 0.0014 27.4 3.9 31 7-38 111-141 (271)
422 3u5e_X 60S ribosomal protein L 31.8 1.5E+02 0.0051 21.6 6.7 56 126-181 80-138 (142)
423 4a17_R RPL23A, 60S ribosomal p 31.4 1.5E+02 0.0053 21.7 6.6 56 126-181 88-146 (150)
424 3uzu_A Ribosomal RNA small sub 30.3 26 0.00088 28.8 2.3 33 6-38 114-146 (279)
425 2e5q_A PHD finger protein 19; 30.2 8.8 0.0003 23.5 -0.4 13 44-56 34-46 (63)
426 3iz5_X 60S ribosomal protein L 29.7 1.6E+02 0.0055 21.7 6.2 56 126-181 90-148 (152)
427 2ns6_A Mobilization protein A; 28.2 99 0.0034 23.6 5.2 45 10-54 74-126 (185)
428 4a4j_A Pacszia, cation-transpo 26.8 1E+02 0.0035 18.1 5.9 54 7-63 4-60 (69)
429 2xmw_A PACS-N, cation-transpor 26.0 1E+02 0.0035 17.8 6.5 57 6-65 4-63 (71)
430 2od0_A Hypothetical protein VP 25.1 72 0.0025 21.6 3.6 22 18-39 4-25 (105)
431 3tqs_A Ribosomal RNA small sub 24.4 30 0.001 28.0 1.7 31 8-38 98-128 (255)
432 3swz_A Steroid 17-alpha-hydrox 23.9 1.1E+02 0.0039 26.6 5.6 60 8-74 16-79 (494)
433 3dxs_X Copper-transporting ATP 23.8 1.2E+02 0.0042 18.0 6.9 56 7-65 4-63 (74)
434 4hcz_A PHD finger protein 1; p 23.6 35 0.0012 20.6 1.4 12 45-56 31-42 (58)
435 4bby_A Alkyldihydroxyacetoneph 23.3 70 0.0024 29.8 4.2 53 13-65 350-408 (658)
436 1qyr_A KSGA, high level kasuga 23.2 67 0.0023 25.8 3.6 31 7-37 91-121 (252)
437 3ftd_A Dimethyladenosine trans 22.2 60 0.002 26.0 3.1 31 7-37 96-126 (249)
438 1x8d_A Hypothetical protein YI 21.9 1.9E+02 0.0064 19.6 5.1 33 21-54 27-60 (104)
439 3fjv_A Uncharacterized novel p 21.9 74 0.0025 24.5 3.3 47 18-68 65-111 (194)
440 1ik9_C DNA ligase IV; DNA END 21.5 64 0.0022 17.4 2.1 15 16-30 20-34 (37)
441 3tbg_A Cytochrome P450 2D6; mo 21.2 68 0.0023 27.8 3.5 48 10-63 20-70 (479)
442 3h7h_B Transcription elongatio 20.7 1.1E+02 0.0038 21.0 3.7 35 32-68 40-74 (106)
443 2g9o_A Copper-transporting ATP 20.6 1.7E+02 0.0058 18.5 5.2 57 6-65 4-64 (90)
444 2cs4_A Protein C12ORF2; GTP bi 20.6 72 0.0024 21.5 2.6 22 11-32 21-43 (95)
445 1i4w_A Mitochondrial replicati 20.5 87 0.003 26.7 3.8 22 8-29 144-165 (353)
446 2gu3_A YPMB protein; APC1927, 20.0 1.3E+02 0.0046 21.5 4.3 44 11-54 68-127 (136)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=7.7e-34 Score=233.25 Aligned_cols=164 Identities=23% Similarity=0.372 Sum_probs=144.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
+.|+++|||+|||+++|+++|+++|++||+|.+|.|.. ++.++|||||+|.+.++|.+|++.+++..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 36789999999999999999999999999999999965 467889999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeC
Q 022688 80 AHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~ 159 (293)
+..... .......+|||+|||..+++++|+++|+.||.|..+.++.+
T Consensus 92 ~~~~~~---------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d 138 (213)
T 4f02_A 92 SQRDPS---------------------------------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 138 (213)
T ss_dssp CCCCTH---------------------------------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred cccccc---------------------------------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc
Confidence 764410 11122358999999999999999999999999999999987
Q ss_pred CCC--cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 160 SEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 160 ~~~--g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
..+ |||||+|.+.++|.+|+..|||..+. |+.|.|..+..
T Consensus 139 ~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~----g~~i~V~~a~~ 180 (213)
T 4f02_A 139 ENGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCC
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEEEEEcCC
Confidence 654 69999999999999999999999999 99999998864
No 2
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.6e-32 Score=215.58 Aligned_cols=160 Identities=23% Similarity=0.327 Sum_probs=142.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
++++|||+|||+++|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|..|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 689999999999999999999999999999999954 46688999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC
Q 022688 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 161 (293)
.... ..+..+|+|+|||..+++++|+++|++||.|..+.+..+..
T Consensus 82 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 82 PGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp CCSS-----------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred CCcc-----------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 5411 12456999999999999999999999999999999998863
Q ss_pred C----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 162 ~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
+ |+|||+|.+.++|.+|+..|||..+.+ .++.|.|..+
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEG--GSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT--CSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecC--CCeEEEEEeC
Confidence 3 699999999999999999999999971 1388887653
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=214.97 Aligned_cols=159 Identities=21% Similarity=0.370 Sum_probs=142.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~ 84 (293)
++|||+|||+++|+++|+++|++||+|.+|.+..+ +.++|||||+|.+.++|..|++.|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999999653 5678999999999999999998899999999999999987551
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC--
Q 022688 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (293)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-- 162 (293)
. ....+..+|+|+|||..+++++|.++|++||.|..+.+..+..+
T Consensus 81 ~---------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 127 (166)
T 3md3_A 81 Q---------------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS 127 (166)
T ss_dssp C---------------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC
T ss_pred C---------------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 1 11234579999999999999999999999999999999988543
Q ss_pred --cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 163 --g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
|+|||+|.+.++|..|+..|||..+. |+.|.|.+++
T Consensus 128 ~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~ 165 (166)
T 3md3_A 128 SRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINWAA 165 (166)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEESC
T ss_pred cceEEEEEeCCHHHHHHHHHHhCCCccC----CcEEEEEecC
Confidence 59999999999999999999999998 9999998875
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=9.9e-32 Score=211.85 Aligned_cols=158 Identities=23% Similarity=0.341 Sum_probs=140.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
++++|||+|||+++|+++|+++|+.||+|..+.+.. ++.++|||||+|.+.++|..|++.|+|..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 478999999999999999999999999999999965 46778999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC
Q 022688 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 161 (293)
... ......+|+|+|||..+++++|+++|++||.|..+.+..+..
T Consensus 81 ~~~-----------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 81 PSS-----------------------------------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp CCC-----------------------------------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCc-----------------------------------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 541 112346899999999999999999999999999999998763
Q ss_pred C----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCce--eEeecC
Q 022688 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR--ITVKRY 201 (293)
Q Consensus 162 ~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~--i~v~~~ 201 (293)
+ |+|||+|.+.++|.+|+..|||..+. |+. |.|.++
T Consensus 126 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~~~i~v~~A 167 (167)
T 1fxl_A 126 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS----GATEPITVKFA 167 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCT----TCSSCCEEEEC
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCCccC----CCccceEEEeC
Confidence 3 69999999999999999999999998 643 666543
No 5
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=3.4e-32 Score=221.52 Aligned_cols=195 Identities=14% Similarity=0.116 Sum_probs=144.8
Q ss_pred CCCCeEEEcCCC-CCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLP-SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
-++++|||+||| ..+|+++|+++|++||.|.+|.|..+ .+|||||+|.+.++|+.|++.|||..|.|+.|.|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 478999999999 79999999999999999999999754 479999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC-CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCe--EEEEEee
Q 022688 83 GSGRGPSSSDRRGGYGGGGAGGAG-GAGAGAG-AGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV--CFAEVSR 158 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i--~~~~~~~ 158 (293)
........................ ....... .........+..+|||+|||..+++++|+++|++||.| ..+.+..
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 432110000000000000000000 0000000 00001112456799999999999999999999999998 8898887
Q ss_pred CCC--CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 159 DSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 159 ~~~--~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
+.. .|+|||+|.+.++|..|+..|||.++.+......+.|+.
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 742 379999999999999999999999999766666776654
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=6.6e-32 Score=218.63 Aligned_cols=168 Identities=13% Similarity=0.245 Sum_probs=140.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+++|+++|+++|+.||.|.+|.|.. ++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 5678999999999999999999999999999999965 36678999999999999999999 5999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
........ .....+..+|||+|||..+++++|+++|+.||.|..+.++.+.
T Consensus 90 ~~~~~~~~-----------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 90 VSREDSQR-----------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp CC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred cCcccccc-----------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 75421110 1112345799999999999999999999999999999999886
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCCCC
Q 022688 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 206 (293)
Q Consensus 161 ~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~~ 206 (293)
.+ |||||+|.+.++|.+|+.. ++..+. |+.|.|..+.....
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~----G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN----GHNCEVRKALSKQE 185 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEET----TEECEEEECC----
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEEC----CEEEEEEecCChhH
Confidence 43 6999999999999999986 788888 99999999865443
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.1e-31 Score=213.36 Aligned_cols=163 Identities=17% Similarity=0.282 Sum_probs=140.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---C--CCCcEEEEEECCHHHHHHHHHhhCCCccC---CceEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---P--RPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLR 76 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~--~~~g~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~ 76 (293)
++++|||+|||+++|+++|+++|++||+|.+|.+..+ + .++|||||+|.+.++|+.|++.|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 6789999999999999999999999999999999653 2 57899999999999999999999998876 67888
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEE
Q 022688 77 VELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV 156 (293)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~ 156 (293)
+.++... ........+|||+|||..+++++|+++|++||.|..+.+
T Consensus 82 ~~~~~~~----------------------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 82 MKPADSE----------------------------------KNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp EEECGGG----------------------------------CCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred Ecccccc----------------------------------ccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 8877644 111234569999999999999999999999999999999
Q ss_pred eeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 157 SRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 157 ~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
..+..+ |+|||+|.+.++|.+|+..|||..+.. ..++.|.|.+++
T Consensus 128 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~~~l~V~~ad 175 (175)
T 3nmr_A 128 LRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME-GCSSPMVVKFAD 175 (175)
T ss_dssp EECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT-TCSSCCEEEECC
T ss_pred EECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC-CCCCCeEEEecC
Confidence 988654 699999999999999999999988762 124888888763
No 8
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=7.6e-31 Score=224.49 Aligned_cols=195 Identities=19% Similarity=0.245 Sum_probs=148.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHH----HHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
.++++|||+|||+++|+++|+ ++|+.||.|..|.+..++.++|||||+|.+.++|..|++.|||..|.|+.|.|.+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 889999999999999999966 8999999999999988889999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCC-------------------------CCCCCCCC----CCCC--------------------------
Q 022688 80 AHGGSGRGPSSSD-------------------------RRGGYGGG----GAGG-------------------------- 104 (293)
Q Consensus 80 ~~~~~~~~~~~~~-------------------------~~~~~~~~----~~~~-------------------------- 104 (293)
+............ ........ ..+.
T Consensus 87 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (282)
T 3pgw_A 87 AKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPP 166 (282)
T ss_pred eccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCC
Confidence 8754321000000 00000000 0000
Q ss_pred ---CCCCCCCCC-------------C-----CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCc
Q 022688 105 ---AGGAGAGAG-------------A-----GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT 163 (293)
Q Consensus 105 ---~~~~~~~~~-------------~-----~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g 163 (293)
....+.... . ........+..+|||+|||..+++++|+++|+.||.|..+.+..+. .|
T Consensus 167 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g 245 (282)
T 3pgw_A 167 PGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-HD 245 (282)
T ss_pred CCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-Cc
Confidence 000000000 0 0001123356789999999999999999999999999999999765 46
Q ss_pred EEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 164 YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 164 ~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
+|||+|.+.++|.+|+..|||..+.. |+.|.|.+++
T Consensus 246 ~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~ak 281 (282)
T 3pgw_A 246 IAFVEFDNEVQAGAARDALQGFKITQ---NNAMKISFAK 281 (282)
T ss_pred EEEEEeCCHHHHHHHHHHcCCcEeCC---CCEEEEEEec
Confidence 99999999999999999999999873 7889988875
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.98 E-value=2.9e-31 Score=218.12 Aligned_cols=173 Identities=18% Similarity=0.316 Sum_probs=145.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
++++|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 458999999999999999999999999999999964 46789999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC
Q 022688 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 161 (293)
......+.. ...........+|||+|||..+++++|+++|++||.|..+.+..+..
T Consensus 107 ~~~~~~~~~------------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 162 (216)
T 2qfj_A 107 NIGQAQPII------------------------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT 162 (216)
T ss_dssp CCGGGHHHH------------------------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT
T ss_pred Cccccchhh------------------------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 441100000 00000113457999999999999999999999999999999998854
Q ss_pred C----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCCC
Q 022688 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (293)
Q Consensus 162 ~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~ 205 (293)
+ |+|||+|.+.++|.+|+..|||..+. |+.|.|.++...+
T Consensus 163 ~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~----g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 163 TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG----GQYLRVGKAVTPP 206 (216)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCBCS----SSBCEEEECSSCS
T ss_pred CCCcCceEEEEecCHHHHHHHHHHccCCEeC----CcEEEEEEecCCC
Confidence 3 69999999999999999999999998 9999999987543
No 10
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=8.1e-31 Score=217.59 Aligned_cols=190 Identities=16% Similarity=0.202 Sum_probs=146.8
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
.++++|||+|||+ ++|+++|+++|++||.|..|.|..+. +|||||+|.+.++|++|++.|||..|.|+.|.|.++..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 5789999999999 99999999999999999999997654 79999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEEe
Q 022688 83 GSGRGPSSSDRRG----GYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVS 157 (293)
Q Consensus 83 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~ 157 (293)
.....+....... .+...... ...............+..+|||+|||..+++++|+++|++|| .|..+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLH----RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSC----CCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred ccccCccccccccccccccccCccc----ccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 5322111110000 00000000 000000111112234578999999999999999999999999 99999986
Q ss_pred eCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 158 RDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 158 ~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
... .|+|||+|.+.++|.+|+..|+|..+.. |+.|.|.+++.
T Consensus 186 ~~~-~g~afV~f~~~~~A~~Ai~~l~g~~~~~---g~~l~v~~a~~ 227 (229)
T 2adc_A 186 QKD-RKMALIQMGSVEEAVQALIDLHNHDLGE---NHHLRVSFSKS 227 (229)
T ss_dssp SSS-TTCEEEEESSHHHHHHHHHHHTTCBSSS---SCBCEEEECSS
T ss_pred ECC-CcEEEEEECCHHHHHHHHHHHCCCccCC---CCeEEEEEecC
Confidence 532 4799999999999999999999999862 78888888753
No 11
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=6.2e-31 Score=213.44 Aligned_cols=191 Identities=16% Similarity=0.186 Sum_probs=145.4
Q ss_pred CCeEEEcCCCC-CCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCC
Q 022688 6 SRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (293)
Q Consensus 6 ~~~l~V~nLp~-~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~ 84 (293)
+++|||+|||+ ++|+++|+++|++||.|..|.+..+. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 68999999999 99999999999999999999997654 7899999999999999999999999999999999998653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEEeeCCCCc
Q 022688 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT 163 (293)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g 163 (293)
...+..................................+..+|||+|||..+++++|.++|+.|| .|..+.+..+. .|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~g 159 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-RK 159 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-SS
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-Cc
Confidence 22211111000000000000000000011111122234678999999999999999999999999 99999986643 47
Q ss_pred EEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 164 YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 164 ~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
+|||+|.+.++|..|+..|||..+.. |+.|.|.+++
T Consensus 160 ~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~a~ 195 (198)
T 1qm9_A 160 MALIQMGSVEEAVQALIDLHNHDLGE---NHHLRVSFSK 195 (198)
T ss_dssp CEEEECSSHHHHHHHHHHHTSSCCSS---CCSCCEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHhcCCccCC---CCeEEEEeec
Confidence 99999999999999999999999862 6788888764
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=8.9e-31 Score=207.59 Aligned_cols=155 Identities=23% Similarity=0.420 Sum_probs=138.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhc----C-------CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g 72 (293)
+++++|||+|||+++|+++|+++|++| | .|..+.+.. ++|||||+|.++++|.+|+ .|||..+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~---~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET---TTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC---CCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 468999999999999999999999999 6 777777753 4899999999999999999 799999999
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeE
Q 022688 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (293)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~ 152 (293)
+.|.|.++..... .....+|+|+|||..+++++|+++|++||.|.
T Consensus 78 ~~i~v~~~~~~~~-----------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 78 QSLKIRRPHDYQP-----------------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp EECEEECCSSCCC-----------------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred ceeeecCCcccCC-----------------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 9999998664311 11256999999999999999999999999999
Q ss_pred EEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 153 FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 153 ~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
.+.+..+..+ |+|||+|.+.++|.+|+..|||..+. |+.|.|.++
T Consensus 123 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~A 171 (172)
T 2g4b_A 123 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRA 171 (172)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET----TEECEEEEC
T ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC----CeEEEEEeC
Confidence 9999988643 69999999999999999999999999 999999876
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=3.7e-30 Score=208.66 Aligned_cols=179 Identities=21% Similarity=0.352 Sum_probs=143.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhc----C-------CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g 72 (293)
..+++|||+|||+++|+++|.++|+.| | .|..+.+. .++|||||+|.+.++|++|+ .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 578999999999999999999999999 5 66666664 45899999999999999999 799999999
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeE
Q 022688 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (293)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~ 152 (293)
+.|.|.++............... ............+..+|||+|||..+++++|.++|++||.|.
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 142 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSV---------------YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK 142 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSC---------------CCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcC---------------CCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc
Confidence 99999988765222111000000 000001122234668999999999999999999999999999
Q ss_pred EEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCCC
Q 022688 153 FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (293)
Q Consensus 153 ~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~ 205 (293)
.+.+..+..+ |||||+|.+.++|..|+..|||..+. |+.|.|..+....
T Consensus 143 ~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 143 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET----TEECEEEESCCCC
T ss_pred EEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEECCCCC
Confidence 9999988633 69999999999999999999999998 9999999886543
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=2.1e-31 Score=210.18 Aligned_cols=158 Identities=18% Similarity=0.365 Sum_probs=140.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
+++++|||+|||+++|+++|+++|+.||+|.+|.+.. ++.++|||||+|.+.++|.+|++. +..++|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999965 467899999999999999999994 67899999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
.... ...+..+|||+|||..+++++|.++|++||.|..+.+..+.
T Consensus 79 ~~~~-----------------------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 79 IPRD-----------------------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp CCHH-----------------------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred cchh-----------------------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 6431 11234589999999999999999999999999999998875
Q ss_pred CC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 161 ~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
.+ |+|||+|.+.++|.+|+. +++..+. |+.|.|.++..
T Consensus 124 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i~V~~a~p 165 (167)
T 2cjk_A 124 DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK----DRKIEIKRAEP 165 (167)
T ss_dssp SSSTTSEEEEEEESSHHHHHHHHH-CSEECSS----SSCEEEEECCC
T ss_pred CCCccceEEEEEECCHHHHHHHHh-CCCEEeC----CeEEEEeecCC
Confidence 43 699999999999999998 8999998 99999998854
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=3e-31 Score=211.01 Aligned_cols=162 Identities=14% Similarity=0.225 Sum_probs=139.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEE--ecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
..++++|||+|||+++|+++|+++|..||.|..+.+ ..++.++|||||+|.++++|.+|++ |||..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 368899999999999999999999999997766323 3457789999999999999999996 9999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
..... ....+..+|||+|||..+++++|+++|++||.|..+ .....
T Consensus 89 ~~~~~---------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~ 134 (175)
T 1fje_B 89 KGRDS---------------------------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGK 134 (175)
T ss_dssp CCSSC---------------------------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSS
T ss_pred CCccc---------------------------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCC
Confidence 75411 112346799999999999999999999999999877 22233
Q ss_pred CCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 161 EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 161 ~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
..|+|||+|.+.++|.+|+..|||..+. |+.|.|.++..
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~~ 173 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLYYTGE 173 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEET----TEEEEEEECSS
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEecCC
Confidence 4489999999999999999999999999 99999998854
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.4e-29 Score=214.19 Aligned_cols=156 Identities=25% Similarity=0.348 Sum_probs=139.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.++++|||+|||+++|+++|.++|+.||.|..|.+.. ++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 3567999999999999999999999999999999964 4899999999999999999999999999999999997632
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC-
Q 022688 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (293)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~- 162 (293)
.+|||+|||..+++++|.++|+.||.|..+.++.+..+
T Consensus 97 -----------------------------------------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~ 135 (261)
T 3sde_A 97 -----------------------------------------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR 135 (261)
T ss_dssp -----------------------------------------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSC
T ss_pred -----------------------------------------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCC
Confidence 58999999999999999999999999999999988543
Q ss_pred --cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 163 --g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
|+|||+|.+.++|..|+..|++..+.....++.|.|..+..
T Consensus 136 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred cCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 69999999999999999999665554344578888888764
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.6e-29 Score=215.16 Aligned_cols=166 Identities=18% Similarity=0.241 Sum_probs=147.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+++|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4578999999999999999999999999999999864 4678899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCC-CHHHHHHHHhhcCCeEEEEEeeC
Q 022688 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRD 159 (293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~G~i~~~~~~~~ 159 (293)
...... .......+|||+|||..+ ++++|.++|+.||.|..+.++.+
T Consensus 173 ~~~~~~--------------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 173 DAGQLT--------------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG 220 (284)
T ss_dssp CGGGCC--------------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC
T ss_pred CCCCCC--------------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC
Confidence 754111 112345799999999995 99999999999999999999987
Q ss_pred CCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCCC
Q 022688 160 SEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (293)
Q Consensus 160 ~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~ 205 (293)
..+ |+|||+|.+.++|..|+..|||..+. |+.|.|.++....
T Consensus 221 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a~~~~ 265 (284)
T 3smz_A 221 QDGQLKGFAVLEYETAEMAEEAQQQADGLSLG----GSHLRVSFCAPGP 265 (284)
T ss_dssp SSCCEEEEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCSSS
T ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCccC----CeEEEEEEecCCC
Confidence 654 69999999999999999999999998 9999999986544
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=8.9e-29 Score=211.83 Aligned_cols=151 Identities=23% Similarity=0.286 Sum_probs=139.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.++++|||+|||+++|+++|.++|+.|| |..+.+ +.++|||||+|.+.++|..|++.|||..|.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~- 94 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT- 94 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC-
Confidence 3679999999999999999999999999 999988 45689999999999999999999999999999999998542
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC-
Q 022688 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (293)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~- 162 (293)
..+|||+|||..+++++|.++|+.||.|..+.++.+..+
T Consensus 95 ----------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 134 (284)
T 3smz_A 95 ----------------------------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG 134 (284)
T ss_dssp ----------------------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred ----------------------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC
Confidence 259999999999999999999999999999999987644
Q ss_pred ---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 163 ---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
|+|||+|.+.++|..|+..|+|..+. |+.|.|..+..
T Consensus 135 ~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~i~v~~a~~ 174 (284)
T 3smz_A 135 QSKGYGFAEYMKKDSAARAKSDLLGKPLG----PRTLYVHWTDA 174 (284)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCG
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCC
Confidence 59999999999999999999999998 99999988754
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=4.7e-29 Score=214.41 Aligned_cols=167 Identities=13% Similarity=0.263 Sum_probs=142.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcC-CeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
++++|||+|||+++|+++|.++|+.|| .|..|.+..+ +.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999653 5689999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEEeeCC
Q 022688 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~ 160 (293)
........ .....+..+|||+|||.. +++++|.++|+.||.|..+.++.+.
T Consensus 196 ~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 196 PLEKSKRT----------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ 247 (292)
T ss_dssp CC-------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC
T ss_pred CCcccccc----------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC
Confidence 55221110 012235679999999999 9999999999999999999999876
Q ss_pred C-----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCC
Q 022688 161 E-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (293)
Q Consensus 161 ~-----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~ 204 (293)
. .|+|||+|.+.++|..|+ .|||..+. |+.|.|.++..+
T Consensus 248 ~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~----g~~i~V~~a~~k 291 (292)
T 2ghp_A 248 KEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG----NREISVSLADKK 291 (292)
T ss_dssp C---CCCEEEEEEESSHHHHHHHG-GGTTEEET----TEEEEEEECCCC
T ss_pred CcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC----CcEEEEEEecCC
Confidence 5 379999999999999999 99999999 999999998654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.2e-28 Score=211.87 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=136.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC-CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
.++++|||+|||+++|+++|.++|+.||+|..|.|..+ ..++|||||+|.+.++|.+|++ ++|..|.|+.|.|.++..
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~~ 117 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLTE 117 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECCC
Confidence 57899999999999999999999999999999999764 3458999999999999999996 999999999999998643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEEeeCCC
Q 022688 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSE 161 (293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~ 161 (293)
.+|||+|||..+++++|.++|..|| .|..+.++.+..
T Consensus 118 ------------------------------------------~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 155 (292)
T 2ghp_A 118 ------------------------------------------CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF 155 (292)
T ss_dssp ------------------------------------------CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC----
T ss_pred ------------------------------------------CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 3999999999999999999999999 999999988763
Q ss_pred ---CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 162 ---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 162 ---~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
.|||||+|.+.++|..|+..|+|..+. |+.|.|..+..
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~ 196 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIE----GYTLVTKVSNP 196 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCC
Confidence 479999999999999999999999998 89999988763
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.90 E-value=5.5e-24 Score=157.13 Aligned_cols=109 Identities=22% Similarity=0.297 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC-CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.+++|||+|||+++|+++|+++|++||.|.+|.|..+ +.++|||||+|.+.++|++|++.|||..|+|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4678999999999999999999999999999999654 457899999999999999999999999999999999998865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHH
Q 022688 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQD 140 (293)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 140 (293)
..+.... ........+|||+|||+.+|++.
T Consensus 84 ~~~~~~~---------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAEL---------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC-------------------------------------------------------
T ss_pred ccccccc---------------------------ccccCCCCceEeCCCCCCccccc
Confidence 3222111 11112335799999999998763
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.88 E-value=1.4e-21 Score=175.69 Aligned_cols=81 Identities=30% Similarity=0.533 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+.+|+++|.++|++||.|+.|.|+. ++.++|||||+|.+.++|.+||+.|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 5678999999999999999999999999999999964 5678999999999999999999999999999999999999
Q ss_pred CCCC
Q 022688 81 HGGS 84 (293)
Q Consensus 81 ~~~~ 84 (293)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8663
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=9.3e-22 Score=140.97 Aligned_cols=78 Identities=26% Similarity=0.408 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
..++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 467999999999999999999999999999999965 46788999999999999999999999999999999999986
Q ss_pred C
Q 022688 82 G 82 (293)
Q Consensus 82 ~ 82 (293)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.86 E-value=1.1e-21 Score=144.85 Aligned_cols=106 Identities=26% Similarity=0.363 Sum_probs=95.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
+..++++|||+|||+++|+++|+++|+.||.|..|.+..++.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 45789999999999999999999999999999999998888889999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCC
Q 022688 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD 150 (293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 150 (293)
..... .+++...++++|.++|++||-
T Consensus 84 ~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF-------------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT-------------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh-------------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 54110 346677789999999999983
No 25
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=1.8e-20 Score=146.19 Aligned_cols=145 Identities=15% Similarity=0.072 Sum_probs=105.5
Q ss_pred EEEecC-CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 022688 36 IELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGA 114 (293)
Q Consensus 36 v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (293)
+.|..+ ..++|||||+|.+.++|++|+..+++....+..+.+............. ..
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 60 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS----------------------HH 60 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC----------------------CC
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc----------------------cc
Confidence 444333 3678999999999999999998887644333333332111110000000 00
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCc
Q 022688 115 GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (293)
Q Consensus 115 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~ 190 (293)
...........+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+.
T Consensus 61 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 138 (158)
T 2kn4_A 61 HHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD-- 138 (158)
T ss_dssp SSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS--
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--
Confidence 001122235679999999999999999999999999999999987533 69999999999999999999999998
Q ss_pred CCCceeEeecCCCCCC
Q 022688 191 WARGRITVKRYDRSPS 206 (293)
Q Consensus 191 ~~g~~i~v~~~~~~~~ 206 (293)
|+.|.|..+...+.
T Consensus 139 --g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 139 --GRELRVQMARYGRP 152 (158)
T ss_dssp --SSEEEEEEECCSSC
T ss_pred --CeEEEEEECCCCCC
Confidence 99999999875443
No 26
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=136.33 Aligned_cols=76 Identities=45% Similarity=0.718 Sum_probs=72.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~ 84 (293)
++|||+|||+++|+++|+++|++||+|..|.+..+ ++|||||+|.+.++|++|++.|||..|.|+.|.|.++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999866 78999999999999999999999999999999999998763
No 27
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=136.46 Aligned_cols=82 Identities=59% Similarity=1.025 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
...++++|||+|||+++|+++|+++|++||.|..|.|..++.+++||||+|.+.++|++|++.||+..|+|+.|.|.++.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34678999999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 98 ~~ 99 (109)
T 1x4a_A 98 SG 99 (109)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=4e-21 Score=135.53 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcC-CeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhh-CCCccCCceEEEEEc
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELA 80 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l-~g~~i~g~~l~v~~~ 80 (293)
+++|||+|||+++|+++|+++|++|| +|.+|.|.. ++.++|||||+|.+.++|++|++.+ ++..|+|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 68999999999999999999999999 899999854 4788999999999999999999977 457899999999999
Q ss_pred CCCC
Q 022688 81 HGGS 84 (293)
Q Consensus 81 ~~~~ 84 (293)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8663
No 29
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=134.40 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhC--CCccCCceEEEEE
Q 022688 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVEL 79 (293)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v~~ 79 (293)
|..++++|||+|||+++|+++|+++|++||+|.+|.|..+ +|||||+|.+.++|..|++.|+ +..|.|++|.|.+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3478999999999999999999999999999999999865 8999999999999999999886 4789999999999
Q ss_pred cCCCC
Q 022688 80 AHGGS 84 (293)
Q Consensus 80 ~~~~~ 84 (293)
+....
T Consensus 89 A~~~~ 93 (105)
T 1sjq_A 89 SNHKE 93 (105)
T ss_dssp CSSSS
T ss_pred cCCCC
Confidence 98663
No 30
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=2e-20 Score=127.96 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
-.+..|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|++|++.||+..+.|+.|.|.++.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4578999999999999999999999999999999975 59999999999999999999999999999999999984
No 31
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=6e-20 Score=135.52 Aligned_cols=83 Identities=24% Similarity=0.447 Sum_probs=77.3
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEE
Q 022688 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (293)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 78 (293)
|...++++|||+|||.++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3448899999999999999999999999999999999965 56788999999999999999999999999999999999
Q ss_pred EcCCC
Q 022688 79 LAHGG 83 (293)
Q Consensus 79 ~~~~~ 83 (293)
++...
T Consensus 82 ~a~~~ 86 (116)
T 2fy1_A 82 QAKKP 86 (116)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99865
No 32
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=136.43 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+++|+++|+++|++||+|.+|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 3678999999999999999999999999999999999998
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 754
No 33
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=6.3e-20 Score=141.83 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=110.7
Q ss_pred CCCcEEEEEECCHHHHHHHHHhh-CCCccCCceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 022688 43 RPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISR 121 (293)
Q Consensus 43 ~~~g~afV~f~~~~~A~~A~~~l-~g~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (293)
..+|+++|+|.+.++|++|++.| ||..++| .|.+.++............ ..........
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~~ 70 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-------------------HHHHMHRDSC 70 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-------------------CCCCSCSSSS
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-------------------ccccccccCC
Confidence 56899999999999999999999 9999999 9999987643111000000 0000112233
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
.+..+|||+|||..+++++|+++|++||.|..+.++.+ ..|||||+|.+.++|..|+..|||..+. |+.|.|..+
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLC----GCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSS----SSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEEc
Confidence 45679999999999999999999999999999999887 3579999999999999999999999998 999999988
Q ss_pred CCC
Q 022688 202 DRS 204 (293)
Q Consensus 202 ~~~ 204 (293)
...
T Consensus 146 ~~~ 148 (150)
T 2i2y_A 146 NGE 148 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 34
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=131.59 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCc--cCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN--FDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--i~g~~l~v~~~~ 81 (293)
.|+++|||+|||+++|+++|.++|++||+|.+|.+.. .+|+|||+|.+.++|..|++.|++.. |.|++|.|++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 6899999999999999999999999999999999974 48999999999999999999999875 789999999998
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
.+
T Consensus 96 ~k 97 (100)
T 3r27_A 96 SQ 97 (100)
T ss_dssp CS
T ss_pred cc
Confidence 65
No 35
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=1e-19 Score=131.48 Aligned_cols=79 Identities=19% Similarity=0.411 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.++++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.||+..|.|+.|.|.++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 578999999999999999999999999999999987 679999999999999999999999999999999999876
Q ss_pred CCCC
Q 022688 84 SGRG 87 (293)
Q Consensus 84 ~~~~ 87 (293)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 4433
No 36
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.83 E-value=1.5e-20 Score=168.99 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=70.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+..+|||+|||..+++++|.++|.+||.|..|.|+.+.. .|||||+|.+.++|..||..|||..|. |..|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~----gr~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID----GRRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC----CEEEE
Confidence 3457999999999999999999999999999999988753 369999999999999999999999998 99999
Q ss_pred eecCC
Q 022688 198 VKRYD 202 (293)
Q Consensus 198 v~~~~ 202 (293)
|.++.
T Consensus 176 V~~a~ 180 (437)
T 3pgw_S 176 VDVER 180 (437)
T ss_pred EEEeC
Confidence 99876
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-19 Score=128.81 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
+.++++|||+|||.++|+++|+++|++||+|..|.+..+ +.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 468899999999999999999999999999999999654 67899999999999999999999999999999999999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
+...
T Consensus 82 a~~~ 85 (95)
T 2dnz_A 82 VTER 85 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 9876
No 38
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=130.37 Aligned_cols=81 Identities=28% Similarity=0.386 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 6889999999999999999999999999999999965 4678899999999999999999999999999999999999
Q ss_pred CCCC
Q 022688 81 HGGS 84 (293)
Q Consensus 81 ~~~~ 84 (293)
....
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8763
No 39
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=130.43 Aligned_cols=81 Identities=32% Similarity=0.487 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC-CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
..+.++|||+|||+++|+++|+++|++||.|..|.|..+ ..++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 367899999999999999999999999999999999764 4468999999999999999999999999999999999998
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 92 ~~ 93 (103)
T 2cqi_A 92 TP 93 (103)
T ss_dssp CT
T ss_pred CC
Confidence 76
No 40
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=137.09 Aligned_cols=81 Identities=19% Similarity=0.358 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH----HHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 78 (293)
..++++|||+|||+.+++++|+ ++|++||+|.+|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3678999999999999999876 699999999999998888899999999999999999999999999999999999
Q ss_pred EcCCC
Q 022688 79 LAHGG 83 (293)
Q Consensus 79 ~~~~~ 83 (293)
++...
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99865
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=7.1e-20 Score=130.55 Aligned_cols=79 Identities=25% Similarity=0.535 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
|+++|||+|||.++++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 6899999999999999999999999999999999654 6789999999999999999999999999999999999998
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 66
No 42
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.3e-20 Score=130.99 Aligned_cols=81 Identities=22% Similarity=0.355 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec------CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI------PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 76 (293)
+.++++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 46899999999999999999999999999999999964 226789999999999999999999999999999999
Q ss_pred EEEcCCC
Q 022688 77 VELAHGG 83 (293)
Q Consensus 77 v~~~~~~ 83 (293)
|.++...
T Consensus 82 V~~a~~~ 88 (98)
T 2cpf_A 82 VRISERA 88 (98)
T ss_dssp EECSSCS
T ss_pred EEEccCC
Confidence 9999866
No 43
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=2e-19 Score=132.66 Aligned_cols=82 Identities=28% Similarity=0.434 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||.++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred CCCCC
Q 022688 81 HGGSG 85 (293)
Q Consensus 81 ~~~~~ 85 (293)
.....
T Consensus 93 ~~~~~ 97 (115)
T 2dgo_A 93 TRKPP 97 (115)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87643
No 44
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.9e-19 Score=131.50 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
..++++|||+|||+++|+++|+++|++||.|..|.|.. ++.+++||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 36789999999999999999999999999999999965 3567899999999999999999999999999999999998
Q ss_pred CCCC
Q 022688 81 HGGS 84 (293)
Q Consensus 81 ~~~~ 84 (293)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7653
No 45
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=133.61 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCC--CccCCceEEEEEc
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVELA 80 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~v~~~ 80 (293)
..++++|||+|||+++|+++|+++|++||.|.+|.|..+ +|||||+|.+.++|.+|++.|++ ..|.|++|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 468899999999999999999999999999999999865 79999999999999999998874 6899999999999
Q ss_pred CCCC
Q 022688 81 HGGS 84 (293)
Q Consensus 81 ~~~~ 84 (293)
....
T Consensus 105 ~~k~ 108 (119)
T 2ad9_A 105 NHKE 108 (119)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8663
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=7.9e-20 Score=127.25 Aligned_cols=79 Identities=32% Similarity=0.546 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
..++++|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|..|++.|||..|+|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 36889999999999999999999999999999999854 466799999999999999999999999999999999998
Q ss_pred cC
Q 022688 80 AH 81 (293)
Q Consensus 80 ~~ 81 (293)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 47
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=3.2e-20 Score=132.63 Aligned_cols=83 Identities=29% Similarity=0.500 Sum_probs=76.3
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHH----HHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEE
Q 022688 1 MSGRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (293)
Q Consensus 1 m~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 76 (293)
|...++++|||+|||.++|+++|+ ++|++||.|..|.+..++.++|||||+|.+.++|..|+..|||..|+|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456899999999999999999999 9999999999999987777789999999999999999999999999999999
Q ss_pred EEEcCCC
Q 022688 77 VELAHGG 83 (293)
Q Consensus 77 v~~~~~~ 83 (293)
|.++...
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999865
No 48
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.8e-20 Score=131.98 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCC--ccCCceEEEEE
Q 022688 3 GRFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY--NFDGCRLRVEL 79 (293)
Q Consensus 3 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~v~~ 79 (293)
..++++|||+|||+ ++|+++|+++|++||.|.+|.|..+ ++||||+|.+.++|..|++.||+. .|.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 36899999999999 9999999999999999999999754 689999999999999999998864 59999999999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
+...
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9865
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=130.94 Aligned_cols=82 Identities=23% Similarity=0.324 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC-CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
..+.++|||+|||+++|+++|+++|++||.|..|.|..+ +.+++||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 468899999999999999999999999999999999654 6678999999999999999999999999999999999998
Q ss_pred CCC
Q 022688 82 GGS 84 (293)
Q Consensus 82 ~~~ 84 (293)
...
T Consensus 92 ~~~ 94 (103)
T 2d9p_A 92 RKE 94 (103)
T ss_dssp SCC
T ss_pred ccc
Confidence 763
No 50
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=129.42 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEE-EEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDI-ELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v-~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 78 (293)
+.++++|||+|||+++|+++|+++|++||.|..+ .|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4578999999999999999999999999999999 8854 46789999999999999999999999999999999999
Q ss_pred EcCCC
Q 022688 79 LAHGG 83 (293)
Q Consensus 79 ~~~~~ 83 (293)
++...
T Consensus 82 ~a~~~ 86 (96)
T 1x5t_A 82 YAFKK 86 (96)
T ss_dssp ESCCC
T ss_pred Eeccc
Confidence 99876
No 51
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.3e-19 Score=128.14 Aligned_cols=82 Identities=26% Similarity=0.377 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec-CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++++|||+|||.++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 347899999999999999999999999999999999965 4678899999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 866
No 52
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.9e-19 Score=131.27 Aligned_cols=80 Identities=25% Similarity=0.369 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
..+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.+++||||+|.+.++|++|++.|++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 36789999999999999999999999999999999965 367899999999999999999999998 89999999999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9765
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.3e-19 Score=125.60 Aligned_cols=78 Identities=22% Similarity=0.402 Sum_probs=73.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
+.+|||+|||+++|+++|+++|++||+|..+.+.. ++.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999964 467789999999999999999999999999999999999986
Q ss_pred C
Q 022688 83 G 83 (293)
Q Consensus 83 ~ 83 (293)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 54
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=3.6e-20 Score=131.26 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCC--eeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCC----ccCCce
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR--ILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGY----NFDGCR 74 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~----~i~g~~ 74 (293)
..=.||||+|||+++|+++|+++|++||. |.+|.+.. ++.++|||||+|.+.++|++|++.|||. .|+|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45579999999999999999999999995 66888754 4788999999999999999999999996 589999
Q ss_pred EEEEEcCC
Q 022688 75 LRVELAHG 82 (293)
Q Consensus 75 l~v~~~~~ 82 (293)
|.|.||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
No 55
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=128.00 Aligned_cols=79 Identities=24% Similarity=0.471 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||.++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++ ||+..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 6889999999999999999999999999999999965 36789999999999999999999 9999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 56
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=128.75 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHH----HHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
.+.++|||+|||+++++++|+ ++|++||+|..|.|..+...++||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999 9999999999999976544489999999999999999999999999999999999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
+...
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9765
No 57
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=8.7e-20 Score=127.61 Aligned_cols=80 Identities=29% Similarity=0.434 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||.++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|+.|++.|||..|+|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 5788999999999999999999999999999999965 4677899999999999999999999999999999999998
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 58
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.7e-19 Score=128.54 Aligned_cols=81 Identities=27% Similarity=0.485 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC-CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
.+.++|||+|||+++|+++|+++|++||.|..|.|..+ ..+++||||+|.+.++|++|+..|||..|+|+.|.|.++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 67899999999999999999999999999999999764 35789999999999999999999999999999999999987
Q ss_pred CC
Q 022688 83 GS 84 (293)
Q Consensus 83 ~~ 84 (293)
..
T Consensus 93 ~~ 94 (103)
T 2cq3_A 93 RV 94 (103)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=128.44 Aligned_cols=78 Identities=21% Similarity=0.414 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+++|+++|+++|++||+|..|.+..+ +.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 56899999999999999999999999999999999654 678999999999999999999999999999999999997
Q ss_pred C
Q 022688 81 H 81 (293)
Q Consensus 81 ~ 81 (293)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 60
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=131.25 Aligned_cols=80 Identities=35% Similarity=0.502 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||.++|+++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 57899999999999999999999999999999999653 678999999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 866
No 61
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=130.98 Aligned_cols=81 Identities=31% Similarity=0.506 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+++|+++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 57899999999999999999999999999999999654 678999999999999999999999999999999999999
Q ss_pred CCCC
Q 022688 81 HGGS 84 (293)
Q Consensus 81 ~~~~ 84 (293)
....
T Consensus 90 ~~~~ 93 (102)
T 2cqb_A 90 KPMR 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8763
No 62
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=126.44 Aligned_cols=80 Identities=25% Similarity=0.486 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCC---C-CCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP---R-PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~---~-~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
-.+++|||+|||+++|+++|+++|++||.|..+.+..+. . ++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 467899999999999999999999999999999995532 2 789999999999999999999999999999999999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
+...
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9765
No 63
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=128.19 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhh--CCCccCCceEEEEEc
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR--DGYNFDGCRLRVELA 80 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~i~g~~l~v~~~ 80 (293)
..++++|||+|||+++|+++|+++|++||.|..|.|..+ +|||||+|.+.++|..|++.| ++..|.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 368899999999999999999999999999999988754 899999999999999999977 567899999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 89 ~~~ 91 (101)
T 2cq1_A 89 NHK 91 (101)
T ss_dssp SCS
T ss_pred Ccc
Confidence 866
No 64
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=129.51 Aligned_cols=80 Identities=34% Similarity=0.549 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 6789999999999999999999999999999999965 3568899999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 866
No 65
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=129.00 Aligned_cols=80 Identities=23% Similarity=0.433 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.+.++|||+|||+++|+++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 56899999999999999999999999999999999654 5678999999999999999999999999999999999998
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 95 ~~ 96 (100)
T 2do4_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred CC
Confidence 66
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=130.06 Aligned_cols=80 Identities=29% Similarity=0.399 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 6789999999999999999999999999999999965 4678899999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 866
No 67
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=131.31 Aligned_cols=80 Identities=34% Similarity=0.512 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5689999999999999999999999999999999965 4678899999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 93 ~~~ 95 (103)
T 2cq0_A 93 KPS 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 876
No 68
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=130.38 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHHhcCCee-EEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCce---
Q 022688 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRIL-DIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--- 74 (293)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~-~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~--- 74 (293)
+..++++|||+|||+++|+++|+++|++||+|. .|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 458899999999999999999999999999999 999965 4578899999999999999999999999999999
Q ss_pred -EEEEEcCCC
Q 022688 75 -LRVELAHGG 83 (293)
Q Consensus 75 -l~v~~~~~~ 83 (293)
|.|.++...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999998865
No 69
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=1.9e-19 Score=132.74 Aligned_cols=81 Identities=21% Similarity=0.512 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 5679999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred CCCC
Q 022688 81 HGGS 84 (293)
Q Consensus 81 ~~~~ 84 (293)
....
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8763
No 70
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=127.97 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCC--CccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~v~~~~ 81 (293)
.++++|||+|||+++|+++|+++|++||.|..|.|..+ +|||||+|.+.++|..|++.|++ ..|.|+.|.|.++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 57899999999999999999999999999999998753 89999999999999999998865 45999999999998
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 90 ~~ 91 (104)
T 1wex_A 90 SK 91 (104)
T ss_dssp SS
T ss_pred Cc
Confidence 66
No 71
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=128.39 Aligned_cols=80 Identities=25% Similarity=0.406 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
..+.++|||+|||+.+++++|+++|++||+|..|.|..+ +.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 367899999999999999999999999999999999654 567899999999999999999999999999999999998
Q ss_pred CC
Q 022688 81 HG 82 (293)
Q Consensus 81 ~~ 82 (293)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 72
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=128.31 Aligned_cols=79 Identities=30% Similarity=0.444 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+++|+++|+++|++||+|..|.+..+ +.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 67899999999999999999999999999999999654 567899999999999999999999999999999999998
Q ss_pred CC
Q 022688 81 HG 82 (293)
Q Consensus 81 ~~ 82 (293)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 73
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=3.1e-19 Score=129.41 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCC---ceEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG---CRLRVE 78 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g---~~l~v~ 78 (293)
.++++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4689999999999999999999999999999999965 45678999999999999999999999999998 999999
Q ss_pred EcCCCCC
Q 022688 79 LAHGGSG 85 (293)
Q Consensus 79 ~~~~~~~ 85 (293)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987643
No 74
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=124.75 Aligned_cols=76 Identities=33% Similarity=0.621 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
+.+.++|||+|||.++|+++|+++|++||+|..|.+. ++||||+|.+.++|++|++.||+..|+|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 3788999999999999999999999999999999998 78999999999999999999999999999999999987
Q ss_pred C
Q 022688 83 G 83 (293)
Q Consensus 83 ~ 83 (293)
.
T Consensus 80 ~ 80 (90)
T 2dnq_A 80 K 80 (90)
T ss_dssp C
T ss_pred C
Confidence 6
No 75
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=130.90 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+++|+++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|+..|||..|+|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 46788999999999999999999999999999999654 677899999999999999999999999999999999998
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 765
No 76
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=126.84 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccC--CceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD--GCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~v~~~~ 81 (293)
.++++|||+|||+++|+++|+++|++||.|..|.+... ++||||+|.+.++|++|++.|||..|. |+.|.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 57899999999999999999999999999999998754 789999999999999999999999999 9999999998
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 77
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.4e-19 Score=129.02 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec----CCCCCcEEEEEECCHHHHHHHHHhh-CCCccCCceEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVE 78 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~----~~~~~g~afV~f~~~~~A~~A~~~l-~g~~i~g~~l~v~ 78 (293)
.++++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|+..| |+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 6789999999999999999999999999999999954 4678999999999999999999999 9999999999999
Q ss_pred EcCCC
Q 022688 79 LAHGG 83 (293)
Q Consensus 79 ~~~~~ 83 (293)
++...
T Consensus 93 ~a~~~ 97 (107)
T 2cph_A 93 WADSE 97 (107)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 99876
No 78
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.1e-19 Score=125.04 Aligned_cols=76 Identities=34% Similarity=0.610 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
..++++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4788999999999999999999999999999999998 56999999999999999999999999999999999987
Q ss_pred C
Q 022688 83 G 83 (293)
Q Consensus 83 ~ 83 (293)
.
T Consensus 82 ~ 82 (92)
T 2dgt_A 82 R 82 (92)
T ss_dssp C
T ss_pred C
Confidence 6
No 79
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=8.2e-19 Score=127.78 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCC-----ceEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-----CRLRVE 78 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g-----~~l~v~ 78 (293)
...++|||+|||+++|+++|+++|++||+|..|.|..+ +||||+|.+.++|++||+.|||..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 56899999999999999999999999999999999865 899999999999999999999999999 999999
Q ss_pred EcCCC
Q 022688 79 LAHGG 83 (293)
Q Consensus 79 ~~~~~ 83 (293)
++...
T Consensus 89 ~a~~~ 93 (108)
T 1x4c_A 89 VDGPR 93 (108)
T ss_dssp ESSCC
T ss_pred eCCCC
Confidence 99875
No 80
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=129.69 Aligned_cols=79 Identities=24% Similarity=0.400 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC----CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 78 (293)
..+.++|||+|||+++|+++|+++|+.|| |..|.|..+ +.++|||||+|.+.++|++|+ .||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 46789999999999999999999999999 999999654 677999999999999999999 899999999999999
Q ss_pred EcCCC
Q 022688 79 LAHGG 83 (293)
Q Consensus 79 ~~~~~ 83 (293)
++...
T Consensus 90 ~a~~~ 94 (104)
T 1wi8_A 90 VADQA 94 (104)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 99876
No 81
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=4.2e-19 Score=128.88 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCcc---CCceEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLR 76 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i---~g~~l~ 76 (293)
..+.++|||+|||.++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+|++.|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999965 367899999999999999999999999887 899999
Q ss_pred EEEcCCC
Q 022688 77 VELAHGG 83 (293)
Q Consensus 77 v~~~~~~ 83 (293)
|.++...
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9999876
No 82
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.9e-19 Score=129.20 Aligned_cols=80 Identities=20% Similarity=0.410 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhC------CCccCCce
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRD------GYNFDGCR 74 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~------g~~i~g~~ 74 (293)
.++++|||+|||+++|+++|+++|++||+|..|.|..+ +.++|||||+|.+.++|.+|+..|| +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 57899999999999999999999999999999999654 6789999999999999999999999 99999999
Q ss_pred EEEEEcCCC
Q 022688 75 LRVELAHGG 83 (293)
Q Consensus 75 l~v~~~~~~ 83 (293)
|.|.++...
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999999866
No 83
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=2.6e-19 Score=134.46 Aligned_cols=80 Identities=30% Similarity=0.460 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+++|+++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 67899999999999999999999999999999999653 678999999999999999999999999999999999998
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 865
No 84
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=1.2e-19 Score=130.25 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCC------CCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCC-c
Q 022688 4 RFSRTIYVGNLPS------DIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-C 73 (293)
Q Consensus 4 ~~~~~l~V~nLp~------~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g-~ 73 (293)
..+++|||+|||+ ++++++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 999999999999999999999954 36789999999999999999999999999999 9
Q ss_pred eEEEEEcCC
Q 022688 74 RLRVELAHG 82 (293)
Q Consensus 74 ~l~v~~~~~ 82 (293)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999864
No 85
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=129.01 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.+.++|||+|||+++|+++|.++|++||+|.+|.|..+ +.++|||||+|.+.++|..|+. ++|..|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 45789999999999999999999999999999999654 6789999999999999999999 99999999999999876
Q ss_pred C
Q 022688 82 G 82 (293)
Q Consensus 82 ~ 82 (293)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 86
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.2e-19 Score=123.75 Aligned_cols=75 Identities=32% Similarity=0.554 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|+.|++.|||..|+|+.|.|.++...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 678999999999999999999999999999999998 569999999999999999999999999999999999866
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=129.51 Aligned_cols=81 Identities=26% Similarity=0.464 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
..++++|||+|||+.+|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|..|++.|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 36789999999999999999999999999999999964 467789999999999999999999999999999999999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
+...
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8765
No 88
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=4.7e-19 Score=128.89 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.++++|||+|||+.+|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5789999999999999999999999999999999964 46778999999999999999999999999999999999975
No 89
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=2.9e-19 Score=130.12 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
...++|||+|||+++|+++|+++|++|| +|..+.|.. ..++|||||+|.+.++|++|++.|||..|+|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 5567999999999999999999999999 899998853 35799999999999999999999999999999999999875
Q ss_pred C
Q 022688 83 G 83 (293)
Q Consensus 83 ~ 83 (293)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 5
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=127.30 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCC-eeEEEEe-c---CCCCCcEEEEEECCHHHHHHHHHhhC--CCccCCceE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELK-I---PPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRL 75 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-I~~v~i~-~---~~~~~g~afV~f~~~~~A~~A~~~l~--g~~i~g~~l 75 (293)
+.++++|||+|||+++|+++|+++|.+||. |..|.+. . ++.++|||||+|.+.++|..|+..|+ +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 467899999999999999999999999998 9999886 3 34789999999999999999999996 599999999
Q ss_pred EEEEcCCCCC
Q 022688 76 RVELAHGGSG 85 (293)
Q Consensus 76 ~v~~~~~~~~ 85 (293)
.|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 91
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=126.91 Aligned_cols=78 Identities=28% Similarity=0.359 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeE--------EEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~--------v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g 72 (293)
.+.++|||+|||.++|+++|+++|++||.|.. +.+.. ++.++|||||+|.+.++|++|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 67899999999999999999999999999999 88864 36788999999999999999999999999999
Q ss_pred ceEEEEEcC
Q 022688 73 CRLRVELAH 81 (293)
Q Consensus 73 ~~l~v~~~~ 81 (293)
+.|.|.+++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 92
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=133.19 Aligned_cols=80 Identities=31% Similarity=0.586 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||.++|+++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 56799999999999999999999999999999999653 567899999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 120 ~~~ 122 (139)
T 1u6f_A 120 ASG 122 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 876
No 93
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=7.5e-20 Score=128.81 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=67.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcC--CeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G--~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.+|||+|||+++|+++|+++|++|| .|.++.+.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999999965 56789999999999999999999999999999999999988
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 65
No 94
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=3.9e-19 Score=129.99 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||.++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 5678999999999999999999999999999999964 4678999999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 865
No 95
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=7.4e-19 Score=126.91 Aligned_cols=80 Identities=28% Similarity=0.492 Sum_probs=73.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEE
Q 022688 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (293)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 78 (293)
...+.++|||+|||+++|+++|+++|++|| |..|.|..+ +.++|||||+|.+.++|++|+ .|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 346889999999999999999999999997 999999654 677899999999999999999 799999999999999
Q ss_pred EcCCC
Q 022688 79 LAHGG 83 (293)
Q Consensus 79 ~~~~~ 83 (293)
++...
T Consensus 89 ~a~~~ 93 (103)
T 2dng_A 89 IAEGR 93 (103)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99866
No 96
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=126.91 Aligned_cols=78 Identities=22% Similarity=0.411 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.+.++|||+|||.++|+++|+++|++||.|..|.|..+ +|||||+|.+.++|..|+..|||..|+|+.|.|.++...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 56789999999999999999999999999999999865 899999999999999999999999999999999999876
Q ss_pred C
Q 022688 84 S 84 (293)
Q Consensus 84 ~ 84 (293)
.
T Consensus 100 ~ 100 (109)
T 1x4g_A 100 P 100 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 97
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=131.61 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHH---HHHHhcCCeeEEEEecCC------CCCcEEEEEECCHHHHHHHHHhhCCCccCCce
Q 022688 4 RFSRTIYVGNLPSDIREYEVE---DLFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~I~~v~i~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~ 74 (293)
.+.++|||+|||+++++++|. ++|++||+|..|.|..+. .++|||||+|.+.++|++|++.|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 999999999999996542 46699999999999999999999999999999
Q ss_pred EEEEEcCCC
Q 022688 75 LRVELAHGG 83 (293)
Q Consensus 75 l~v~~~~~~ 83 (293)
|.|.++...
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999999876
No 98
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3e-19 Score=129.68 Aligned_cols=78 Identities=26% Similarity=0.326 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCC-CcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhC--CCccCCceEEEEE
Q 022688 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVEL 79 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v~~ 79 (293)
..++++|||+|||++ +|+++|+++|++||+|.+|.|.. ++|||||+|.+.++|..|++.|+ +..|.|+.|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 468999999999998 99999999999999999999974 48999999999999999999885 4679999999999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
+...
T Consensus 99 a~~~ 102 (112)
T 1x4f_A 99 SEKY 102 (112)
T ss_dssp ECSC
T ss_pred Cccc
Confidence 9865
No 99
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.9e-19 Score=128.18 Aligned_cols=80 Identities=13% Similarity=0.216 Sum_probs=72.8
Q ss_pred CCCCCCCeEEE--cCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCcc-----CCc
Q 022688 1 MSGRFSRTIYV--GNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF-----DGC 73 (293)
Q Consensus 1 m~~~~~~~l~V--~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i-----~g~ 73 (293)
++..|+++||| +||+.++|+++|+++|++||+|..|.|.. .+|||||+|.+.++|++|++.|||..| .|+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 35678999999 77999999999999999999999998764 379999999999999999999999988 689
Q ss_pred eEEEEEcCCC
Q 022688 74 RLRVELAHGG 83 (293)
Q Consensus 74 ~l~v~~~~~~ 83 (293)
+|.|.++...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999999865
No 100
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8.9e-19 Score=126.70 Aligned_cols=82 Identities=18% Similarity=0.304 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHh-cCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCc-cCCceEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYN-FDGCRLRVE 78 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~-i~g~~l~v~ 78 (293)
..++++|||+|||+++|+++|+++|++ ||.|..|.|.. ++.++|||||+|.+.++|..|++.|||.. |+|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 367899999999999999999999999 99999999965 46788999999999999999999999999 999999999
Q ss_pred EcCCCC
Q 022688 79 LAHGGS 84 (293)
Q Consensus 79 ~~~~~~ 84 (293)
++....
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 997653
No 101
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=4e-19 Score=131.61 Aligned_cols=79 Identities=24% Similarity=0.567 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
..+.++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35679999999999999999999999999999999964 367899999999999999999999999999999999998
Q ss_pred cC
Q 022688 80 AH 81 (293)
Q Consensus 80 ~~ 81 (293)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 102
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.8e-19 Score=126.20 Aligned_cols=75 Identities=25% Similarity=0.514 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
.++++|||+|||+ ++|+++|+++|++||.|..|.+. +|||||+|.+.++|+.|+..|||..+.|+.|.|.++..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 7899999999998 99999999999999999999996 79999999999999999999999999999999999986
Q ss_pred C
Q 022688 83 G 83 (293)
Q Consensus 83 ~ 83 (293)
.
T Consensus 83 ~ 83 (96)
T 2kvi_A 83 N 83 (96)
T ss_dssp C
T ss_pred C
Confidence 5
No 103
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-19 Score=123.30 Aligned_cols=72 Identities=28% Similarity=0.469 Sum_probs=67.0
Q ss_pred CCeEEEcCCCCCC------cHHHHHHHHHhcCCeeEEEEe-cCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCc-eEEE
Q 022688 6 SRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELK-IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRV 77 (293)
Q Consensus 6 ~~~l~V~nLp~~~------t~~~l~~~F~~~G~I~~v~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~-~l~v 77 (293)
+++|||+|||+.+ |+++|+++|++||+|..|.+. .++.++|||||+|.+.++|++|+..|||..|+|+ .|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 889999999999999999985 3578899999999999999999999999999999 8876
No 104
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=1.3e-18 Score=124.09 Aligned_cols=75 Identities=25% Similarity=0.550 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
.++++|||+|||. ++++++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 6789999999998 99999999999999999999985 89999999999999999999999999999999999876
Q ss_pred C
Q 022688 83 G 83 (293)
Q Consensus 83 ~ 83 (293)
.
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 105
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.7e-19 Score=128.82 Aligned_cols=80 Identities=28% Similarity=0.494 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC-CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
.+.++|||+|||.++|+++|+++|++||+|..|.+..+ +.++|||||+|.+.++|++|++.|||..|+|+.|.|.++..
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 57899999999999999999999999999999999654 45789999999999999999999999999999999999876
Q ss_pred C
Q 022688 83 G 83 (293)
Q Consensus 83 ~ 83 (293)
.
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 106
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=1.1e-18 Score=135.83 Aligned_cols=81 Identities=33% Similarity=0.481 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+++|+++|+++|++||+|..|.|..+ +.+++||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 47899999999999999999999999999999999654 567899999999999999999999999999999999999
Q ss_pred CCCC
Q 022688 81 HGGS 84 (293)
Q Consensus 81 ~~~~ 84 (293)
....
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 107
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.8e-19 Score=121.91 Aligned_cols=75 Identities=28% Similarity=0.477 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhh-CCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~i~g~~l~v~~~~ 81 (293)
.++++|||+|||+++|+++|+++|++||.|..|.+..+ +|||||+|.+.++|..|+..| +|..++|+.|.|.+++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 57899999999999999999999999999999999863 799999999999999999998 9999999999999974
No 108
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.7e-19 Score=128.76 Aligned_cols=80 Identities=26% Similarity=0.424 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCee--------EEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--------DIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~--------~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g 72 (293)
.++++|||+|||+++|+++|+++|++||.|. .|.|.. ++.++|||||+|.+.++|++|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 5789999999999999999999999999998 588854 46789999999999999999999999999999
Q ss_pred ceEEEEEcCCC
Q 022688 73 CRLRVELAHGG 83 (293)
Q Consensus 73 ~~l~v~~~~~~ 83 (293)
+.|.|.++...
T Consensus 93 ~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 SKLKVSLARKK 103 (113)
T ss_dssp EECEEECSSCC
T ss_pred CEEEEEECCCC
Confidence 99999999876
No 109
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=7.5e-19 Score=127.31 Aligned_cols=80 Identities=26% Similarity=0.411 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCC------cHHHHHHHHHhcCCeeEEEEe-cCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCc-eE
Q 022688 4 RFSRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELK-IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RL 75 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~------t~~~l~~~F~~~G~I~~v~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~-~l 75 (293)
..+++|||+|||+.+ |+++|+++|++||.|..|.|. .++.++|||||+|.+.++|..|+..|||..|+|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 889999999999999999986 3578899999999999999999999999999999 99
Q ss_pred EEEEcCCC
Q 022688 76 RVELAHGG 83 (293)
Q Consensus 76 ~v~~~~~~ 83 (293)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 110
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1e-18 Score=122.08 Aligned_cols=77 Identities=23% Similarity=0.461 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
..+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|++ +++..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 36889999999999999999999999999999999965 36788999999999999999997 688899999999987
Q ss_pred c
Q 022688 80 A 80 (293)
Q Consensus 80 ~ 80 (293)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 111
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=1.1e-18 Score=122.52 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999964 4678999999999999999999 799999999999999987
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 112
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.3e-19 Score=129.01 Aligned_cols=80 Identities=21% Similarity=0.371 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCe----eEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I----~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
.++++|||+|||.++|+++|+++|++||.| ..+.+. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 477999999999999999999999999998 455555 788899999999999999999999999999999999999
Q ss_pred cCCCC
Q 022688 80 AHGGS 84 (293)
Q Consensus 80 ~~~~~ 84 (293)
+....
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98763
No 113
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=6.9e-19 Score=131.89 Aligned_cols=80 Identities=24% Similarity=0.425 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4678999999999999999999999999999999954 4677999999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 865
No 114
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.78 E-value=3e-19 Score=131.55 Aligned_cols=75 Identities=63% Similarity=1.020 Sum_probs=65.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCce-----
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR----- 195 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~----- 195 (293)
....++|||+|||..+++++|+++|++||.|..+.++.+ |||||+|++.++|.+|++.||+..+. |+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFR----SHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCC----CTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEEC----CcEeeeEE
Confidence 345789999999999999999999999999999999887 79999999999999999999999998 665
Q ss_pred eEeecCC
Q 022688 196 ITVKRYD 202 (293)
Q Consensus 196 i~v~~~~ 202 (293)
|++..+.
T Consensus 86 i~v~~~~ 92 (115)
T 3beg_B 86 IRVKVDG 92 (115)
T ss_dssp CEEEECC
T ss_pred EEeccCC
Confidence 6666654
No 115
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=1e-18 Score=127.13 Aligned_cols=75 Identities=27% Similarity=0.472 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.++++|||+|||.++|+++|+++|++||.|..|.+. +|||||+|.+.++|+.|+..|||..|+|+.|.|.++...
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 578999999999999999999999999999999998 799999999999999999999999999999999999865
No 116
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.5e-19 Score=125.66 Aligned_cols=77 Identities=32% Similarity=0.465 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.++++|||+|||+++|+++|+++|++||+|..|.+..+ ++||||+|.+.++|++|++.|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 57789999999999999999999999999999999854 899999999999999999999999999999999999865
No 117
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=123.36 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHHhcCC-eeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCC-CccCCceEEEEE
Q 022688 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVEL 79 (293)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~i~g~~l~v~~ 79 (293)
.+.+.++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..|+|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 3478899999999999999999999999999 6666664 379999999999999999999999 999999999999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
+...
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 9866
No 118
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-19 Score=125.48 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
+.++++|||+|||+++|+++|+++|++||+|..+.|.. ++.++|||||+|.+.++|+.|++.|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46899999999999999999999999999999999965 367899999999999999999999999999999998876
Q ss_pred cC
Q 022688 80 AH 81 (293)
Q Consensus 80 ~~ 81 (293)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 119
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=124.17 Aligned_cols=78 Identities=26% Similarity=0.461 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
..+++|||+|||+++|+++|+++|++||.|. +.+.. +.++|||||+|.+.++|+.|++.|||..|+|+.|.|.++...
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3489999999999999999999999999996 55543 467899999999999999999999999999999999999865
No 120
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=125.38 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.++++|||+|||+++|+++|+++|++||.|. +....++.++|||||+|.+.++|++|+..||+..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 5789999999999999999999999999882 222345778999999999999999999999999999999999999876
No 121
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.2e-18 Score=122.62 Aligned_cols=75 Identities=29% Similarity=0.421 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhc--CCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.++++|||+|||+++|+++|+++|++| |.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999876 7899999999999999999999999999999999998
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 88 ~~ 89 (99)
T 2cpd_A 88 PV 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 66
No 122
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=8.4e-19 Score=126.17 Aligned_cols=76 Identities=26% Similarity=0.467 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
..+++|||+|||.++|+++|+++|++||.|..|.+. .++|||||+|.+.++|..|+..|||..|+|+.|.|.+++.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 457899999999999999999999999999999997 4589999999999999999999999999999999999874
No 123
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.4e-19 Score=128.92 Aligned_cols=77 Identities=26% Similarity=0.307 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
+.+++|||+|||+++|+++|+++|++||.|..|.|.. +++||||+|.+.++|+.|+..|||..|.|+.|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3568999999999999999999999999999998864 5889999999999999999999999999999999999864
No 124
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=3.1e-18 Score=127.93 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.++++|||+|||+++++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5678999999999999999999999999999999965 46789999999999999999999999999999999999998
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 65
No 125
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=2.3e-18 Score=125.56 Aligned_cols=79 Identities=13% Similarity=0.264 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+++|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|.+|+..+ +..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 57899999999999999999999999999999999653 778999999999999999999965 59999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 102 ~~~ 104 (109)
T 2rs2_A 102 FPR 104 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 866
No 126
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8e-19 Score=127.18 Aligned_cols=80 Identities=15% Similarity=0.282 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
..+.++|||+|||+++|+++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|+.. ++..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 378899999999999999999999999999999999653 57789999999999999999997 99999999999999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
+...
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 8866
No 127
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=134.96 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcC--CeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
..++|||+|||+++|+++|+++|+.|| .|..|.|.. ++.++|||||+|.+.++|++||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999964 477899999999999999999999999999999999999
Q ss_pred cCC
Q 022688 80 AHG 82 (293)
Q Consensus 80 ~~~ 82 (293)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 128
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=4e-19 Score=126.37 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.++++|++|++.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3568999999999999999999999999998777743 4677899999999999999999999999999999999987
Q ss_pred CC
Q 022688 81 HG 82 (293)
Q Consensus 81 ~~ 82 (293)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 129
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=126.00 Aligned_cols=80 Identities=31% Similarity=0.594 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3568999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 865
No 130
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.1e-19 Score=126.15 Aligned_cols=80 Identities=23% Similarity=0.270 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
...++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4568999999999999999999999999998766643 4678899999999999999999999999999999999998
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 131
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.6e-18 Score=122.35 Aligned_cols=81 Identities=59% Similarity=0.934 Sum_probs=71.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCC-cCCCceeEe
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN-PWARGRITV 198 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~-~~~g~~i~v 198 (293)
+....++|||+|||..+++++|+++|.+||.|..+.++.+ |||||+|.+.++|.+|++.||+..+.+ ...++.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 3456789999999999999999999999999999999987 799999999999999999999999981 222299999
Q ss_pred ecCCC
Q 022688 199 KRYDR 203 (293)
Q Consensus 199 ~~~~~ 203 (293)
..+..
T Consensus 88 ~~a~~ 92 (108)
T 1x4c_A 88 KVDGP 92 (108)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 99864
No 132
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=8.2e-19 Score=119.04 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
+|||+|||+++|+++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|++ |||..|+|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999854 46789999999999999999998 9999999999999875
No 133
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=8.3e-19 Score=124.97 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.+.++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|..|+..|||..|+|+.|.|.++...
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 567899999999999999999999999999877 567788999999999999999999999999999999999999865
No 134
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=131.76 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeE--EEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCC----ccCC
Q 022688 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGY----NFDG 72 (293)
Q Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~--v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~----~i~g 72 (293)
.+.++++|||+|||+++|+++|+++|++||.|.. |.|.. ++.++|||||+|.+. +|.+|+..|||. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3467899999999999999999999999999966 88854 567899999999999 999999999999 9999
Q ss_pred ceEEEEEcCCC
Q 022688 73 CRLRVELAHGG 83 (293)
Q Consensus 73 ~~l~v~~~~~~ 83 (293)
+.|.|.++...
T Consensus 98 r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 KTINVEFAKGS 108 (131)
T ss_dssp CCCCCEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999999865
No 135
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=133.23 Aligned_cols=82 Identities=26% Similarity=0.406 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeE--------EEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCce
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~--------v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~ 74 (293)
+.++++|||+|||+++|+++|+++|+.||.|.. +.+..++.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 368899999999999999999999999998876 555667889999999999999999999999999999999
Q ss_pred EEEEEcCCCC
Q 022688 75 LRVELAHGGS 84 (293)
Q Consensus 75 l~v~~~~~~~ 84 (293)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998653
No 136
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=120.15 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.+.++|||+|||+++|+++|+++|+.| .|..|.|..+ +.++|||||+|.+.++|++|+. |||..|+|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 678999999999999999999999999 9999999654 6678999999999999999999 99999999999999998
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 137
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=2.7e-18 Score=125.43 Aligned_cols=74 Identities=30% Similarity=0.625 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCC-CcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 5 FSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 5 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
++++|||+|||++ +|+++|+++|++||+|..|.+ +++||||+|.+.++|+.|++.|||..|+|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 999999999999999999999 3899999999999999999999999999999999999854
No 138
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=5.5e-18 Score=132.01 Aligned_cols=80 Identities=34% Similarity=0.508 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999999965 4788999999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 876
No 139
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8e-18 Score=121.43 Aligned_cols=79 Identities=18% Similarity=0.297 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
..+.++|||+|||.++|+++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|+. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 367899999999999999999999999999999999653 6788999999999999999999 47899999999999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
+...
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 9876
No 140
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=124.14 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.++++|||+|||+++|+++|+++|+.|+.|.-+.-..++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 67899999999999999999999998865443333346778899999999999999999999999999999999999876
No 141
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=1.6e-18 Score=131.30 Aligned_cols=80 Identities=34% Similarity=0.508 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999999999954 4678999999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 866
No 142
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=130.42 Aligned_cols=77 Identities=32% Similarity=0.556 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+++|+++|+++|++||+|..+.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5789999999999999999999999999999999965 3678999999999999999999999999999999999875
No 143
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-18 Score=126.24 Aligned_cols=78 Identities=26% Similarity=0.415 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
+.++|||+|||.++|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|+ .|||..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4579999999999999999999999999999999643 678999999999999999999 799999999999999987
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 144
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-18 Score=119.01 Aligned_cols=73 Identities=14% Similarity=0.316 Sum_probs=68.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
++|||+|||+++|+++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|+..++ ..++|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999965 36789999999999999999999998 9999999999986
No 145
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=125.41 Aligned_cols=78 Identities=26% Similarity=0.447 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec----CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
...++|||+|||.++|+++|+++|+.|| |..|.|.. ++.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5689999999999999999999999999 99999954 4678999999999999999999 7999999999999999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8764
No 146
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=7e-19 Score=123.79 Aligned_cols=76 Identities=32% Similarity=0.573 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
++|||+|||.++++++|+++|++||+|..|.+..+ +.++|||||+|.+.+ |.+|+..|||..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999653 678999999999999 99999999999999999999999865
No 147
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=2.1e-18 Score=120.76 Aligned_cols=77 Identities=32% Similarity=0.372 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
++.+++|||+|||+++|+++|+++|++| .|..+.+. .++|||||+|.+.++|++|++.|||..++|+.|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4678999999999999999999999999 99999885 5689999999999999999999999999999999999875
Q ss_pred C
Q 022688 83 G 83 (293)
Q Consensus 83 ~ 83 (293)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 148
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=3.2e-18 Score=134.31 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+.+|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4677899999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred CCCC
Q 022688 81 HGGS 84 (293)
Q Consensus 81 ~~~~ 84 (293)
....
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 8663
No 149
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=7.2e-18 Score=125.93 Aligned_cols=78 Identities=24% Similarity=0.414 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
+.++|||+|||.++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|+.|+ .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 358999999999999999999999999999999954 5788999999999999999999 699999999999999988
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 150
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=5.7e-18 Score=124.68 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCce-----EEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-----LRVE 78 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~-----l~v~ 78 (293)
...++|||+|||+++|+++|+++|++||+|..|.|..+ |||||+|.+.++|++||+.|||..|+|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 46789999999999999999999999999999999765 89999999999999999999999999998 6776
Q ss_pred EcCCC
Q 022688 79 LAHGG 83 (293)
Q Consensus 79 ~~~~~ 83 (293)
.+...
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 65543
No 151
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6e-18 Score=124.83 Aligned_cols=78 Identities=18% Similarity=0.344 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC---CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
+.++|||+|||.++|+++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|+.. ++..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4589999999999999999999999999999999654 67899999999999999999996 9999999999999998
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 152
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.7e-18 Score=124.57 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCcc--------CCc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNF--------DGC 73 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i--------~g~ 73 (293)
.+.++|||+|||+++|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 56799999999999999999999999999999999654 67789999999999999999999999999 578
Q ss_pred eEEEEEcCCC
Q 022688 74 RLRVELAHGG 83 (293)
Q Consensus 74 ~l~v~~~~~~ 83 (293)
+|.|.|+.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998854
No 153
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=6e-18 Score=130.64 Aligned_cols=78 Identities=42% Similarity=0.733 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.+.++|||+|||+++|+++|+++|++||.|..|.+..+ ++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46799999999999999999999999999999999765 6899999999999999999999999999999999998865
No 154
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.6e-18 Score=121.47 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeE-EEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~-v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+++|+++|+++|+.||.|.. |.|.. ++.++|||||+|.++++|++|+.. ++..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 56899999999999999999999999999987 77754 567899999999999999999996 999999999999998
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 754
No 155
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.1e-18 Score=116.40 Aligned_cols=73 Identities=26% Similarity=0.373 Sum_probs=66.7
Q ss_pred CCCCe-EEEcCCCCCCcHHH----HHHHHHhc-CCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEE
Q 022688 4 RFSRT-IYVGNLPSDIREYE----VEDLFYKY-GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (293)
Q Consensus 4 ~~~~~-l~V~nLp~~~t~~~----l~~~F~~~-G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 77 (293)
.|+.| |||+|||..+++++ |.++|++| |+|.+| + .|+|||+|.+.++|..|++.|||..|.|++|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 46777 99999999999998 55899999 599998 3 299999999999999999999999999999999
Q ss_pred EEcCCC
Q 022688 78 ELAHGG 83 (293)
Q Consensus 78 ~~~~~~ 83 (293)
.+++..
T Consensus 79 ~~A~~~ 84 (96)
T 2diu_A 79 SFTPKN 84 (96)
T ss_dssp ESSCCS
T ss_pred EecCCC
Confidence 999876
No 156
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=118.65 Aligned_cols=75 Identities=25% Similarity=0.482 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.++++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|++|+..|||..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 57899999996 89999999999999999999985 56899999999999999999999999999999999999866
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=119.21 Aligned_cols=79 Identities=16% Similarity=0.340 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEE-EecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~-i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
..+++|||+|||+++|+++|+++|++||.|..|. +..+ ...+.|||+|.+.++|+.|+..|||..|+|+.|.|.++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~-~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTD-SETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCS-SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 4578999999999999999999999999999995 6543 2345599999999999999999999999999999999986
Q ss_pred C
Q 022688 83 G 83 (293)
Q Consensus 83 ~ 83 (293)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 158
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-18 Score=125.45 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEE--ecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.+.++|||+|||+++|+++|+++|+.||.|..+.+ ..++.++|||||+|.+.++|++|++ |||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 47889999999999999999999999998877222 2346889999999999999999999 99999999999999998
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 159
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=118.08 Aligned_cols=77 Identities=17% Similarity=0.373 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
...++|||+|||+++|+++|+++|++||.|..| +......+ ||||+|.+.++|++|+. |||..|+|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 567899999999999999999999999999998 32221222 99999999999999999 9999999999999987654
No 160
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.4e-18 Score=125.73 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCe-eEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI-LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I-~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|.. ++.++|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 578999999999999999999999999999 7788854 567899999999999999999995 999999999999998
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 161
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.6e-18 Score=122.89 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.+.++|||+|||+++|+++|+++|+.||. +.|.|.. ++.++|||||+|.++++|++||+ +|+..|+|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 57789999999999999999999999995 4888854 46789999999999999999996 89999999999999887
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 162
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=2.8e-18 Score=126.88 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCC---eeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 78 (293)
.+.++|||+|||+++|+++|+++|+.||. |..|.|..+ +.++|||||+|.+.++|++|++ ||+..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 56789999999999999999999999998 889988653 6788999999999999999999 99999999999999
Q ss_pred EcCC
Q 022688 79 LAHG 82 (293)
Q Consensus 79 ~~~~ 82 (293)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 163
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=9.8e-18 Score=132.74 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.++++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4678999999999999999999999999999999965 46789999999999999999999999999999999999987
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 65
No 164
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=2.7e-18 Score=116.47 Aligned_cols=72 Identities=22% Similarity=0.503 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
+|||+|||+++|+++|+++|++||+|..+.+.. ++.++|||||+|.+.++|++|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999854 36789999999999999999999 6999999999999875
No 165
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=3.1e-17 Score=126.39 Aligned_cols=76 Identities=22% Similarity=0.329 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCC--ceEEEEEcCCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGG 83 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~~~~ 83 (293)
.+|||+||++.+|+++|+++|++||+|..|.|.. ..+++||||+|.+.++|+.|++.|||..|.| +.|+|+|++..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 4588999999999999999999999999999864 3357899999999999999999999999965 99999999876
No 166
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=4.1e-18 Score=128.61 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCC---eeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 78 (293)
.+.++|||+|||+++|+++|+++|+.||. |..|.|..+ +.++|||||+|.+.++|++|++ ||+..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 46789999999999999999999999999 888888654 6788999999999999999999 99999999999999
Q ss_pred EcCC
Q 022688 79 LAHG 82 (293)
Q Consensus 79 ~~~~ 82 (293)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 8764
No 167
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.7e-18 Score=125.74 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+++|+++|+++|+.||.|..+.+ ..++.++|||||+|.+.++|++||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 46789999999999999999999999999977333 2457789999999999999999999 9999999999999998
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 743
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=1.7e-17 Score=115.77 Aligned_cols=73 Identities=29% Similarity=0.549 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhc----C-------CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccC
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~ 71 (293)
+++.++|||+|||+++|+++|+++|++| | .|.++.+..+ +|||||+|.+.++|.+|+ .|||..|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 9999998754 899999999999999999 89999999
Q ss_pred CceEEEEE
Q 022688 72 GCRLRVEL 79 (293)
Q Consensus 72 g~~l~v~~ 79 (293)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 169
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=9.8e-18 Score=138.25 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcC--CeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
..++|||+|||+++|+++|+++|++|| +|+.|.|+. ++.++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999965 467899999999999999999999999999999999999
Q ss_pred cCC
Q 022688 80 AHG 82 (293)
Q Consensus 80 ~~~ 82 (293)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 863
No 170
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=3.1e-17 Score=121.88 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=67.7
Q ss_pred eEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcE-EEEEECCHHHHHHHHHhhCCCccCC--ceEEEEEcCCC
Q 022688 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGG 83 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~~~~~ 83 (293)
.|||+||++.+|+++|.++|++||+|..|.+... .+|+ |||+|.+.++|+.|++.|||..|.| +.|+|+|++..
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 4669999999999999999999999999988643 3677 9999999999999999999999988 89999999865
No 171
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=119.73 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=68.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
.++|||+|||+++|+++|+++|+.| .|..|.|.. +++++|||||+|.+.++|++||. ||+..|+|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999965 46789999999999999999995 999999999999988753
No 172
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=6.4e-18 Score=122.80 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCC---eeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 78 (293)
.+.++|||+|||+++|+++|+++|+.||. |..|.|..+ +.++|||||+|.+.++|++|+. ||+..|+|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 67889999999999999999999999998 889988543 6789999999999999999999 99999999999999
Q ss_pred EcCC
Q 022688 79 LAHG 82 (293)
Q Consensus 79 ~~~~ 82 (293)
++..
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 9864
No 173
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.6e-19 Score=130.42 Aligned_cols=80 Identities=28% Similarity=0.342 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeE--------EEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~--------v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g 72 (293)
.++++|||+|||.++|+++|+++|++||.|.. |.|.. ++.++|||||+|.+.++|++|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 57899999999999999999999999999998 77754 36789999999999999999999999999999
Q ss_pred ceEEEEEcCCC
Q 022688 73 CRLRVELAHGG 83 (293)
Q Consensus 73 ~~l~v~~~~~~ 83 (293)
+.|.|.++...
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999998865
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6.3e-17 Score=119.69 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=68.2
Q ss_pred CCCe--EEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcE-EEEEECCHHHHHHHHHhhCCCccCC--ceEEEEE
Q 022688 5 FSRT--IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (293)
Q Consensus 5 ~~~~--l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~ 79 (293)
++++ |||+||++.+|+++|+++|++||.|..|.|... .|| |||+|.+.++|..|++.|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4555 579999999999999999999999999999642 386 9999999999999999999999988 6899999
Q ss_pred cCCC
Q 022688 80 AHGG 83 (293)
Q Consensus 80 ~~~~ 83 (293)
++..
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 9866
No 175
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=123.92 Aligned_cols=79 Identities=19% Similarity=0.135 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCe----eEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEE
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I----~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 76 (293)
..+.++|||+|||+++|+++|+++|++||.| ..|.|.. +++++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3577999999999999999999999999975 5777754 577899999999999999999994 99999999999
Q ss_pred EEEcCC
Q 022688 77 VELAHG 82 (293)
Q Consensus 77 v~~~~~ 82 (293)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 176
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=7.8e-17 Score=116.21 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCC-----CCcHHHHHHHHHhcCCeeEEEEecC----CCCCcEEEEEECCHHHHHHHHHhhCCCccCC
Q 022688 2 SGRFSRTIYVGNLPS-----DIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (293)
Q Consensus 2 ~~~~~~~l~V~nLp~-----~~t~~~l~~~F~~~G~I~~v~i~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g 72 (293)
++.++++|+|.||.. +-++++|+++|++||+|.+|.|..+ +.++|+|||+|.++++|.+|++.|||..|+|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 357899999999963 2478999999999999999999754 4689999999999999999999999999999
Q ss_pred ceEEEEEcCC
Q 022688 73 CRLRVELAHG 82 (293)
Q Consensus 73 ~~l~v~~~~~ 82 (293)
+.|.|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999863
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=5.3e-17 Score=113.73 Aligned_cols=74 Identities=22% Similarity=0.483 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCc--cCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN--FDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--i~g~~l~v~~~~ 81 (293)
.+.++|||+|||+++|+++|+++|++||+|.+|.|..+ ++|||||+|.+.++|++ +++.. +.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 57899999999999999999999999999999999764 78999999999999983 45544 469999999987
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
+.
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 65
No 178
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=7.9e-18 Score=127.45 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.+.++|||+|||+++|+++|+++|++|| |+.|.|.. ++.++|||||+|.++++|++|| .+|+..|+|+.|.|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4678999999999999999999999999 77888854 3678999999999999999999 599999999999999887
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 179
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=115.92 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=66.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCC
Q 022688 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~ 82 (293)
+.++++|||+|||.++|+++|+++|++||+|..|.|..+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++..
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 568899999999999999999999999999999998754 689999999999999764331 3455899999999876
Q ss_pred C
Q 022688 83 G 83 (293)
Q Consensus 83 ~ 83 (293)
.
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 180
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=4.9e-17 Score=123.04 Aligned_cols=121 Identities=15% Similarity=0.093 Sum_probs=74.9
Q ss_pred cEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 022688 46 CYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125 (293)
Q Consensus 46 g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (293)
-++|++|.+...|..|+..++|....|+.- +. ....+....+..
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~-----------------------------------~~~~~~~~~~~~ 48 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MS-----------------------------------YGRPPPDVEGMT 48 (135)
T ss_dssp -------------------------------CC-----------------------------------SCCSCSSGGGCC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CC-----------------------------------cCCCCCCCCCCC
Confidence 367788888888888888887655444320 00 001123334567
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..||+..+. |+.|.|..+
T Consensus 49 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~----g~~l~V~~a 124 (135)
T 2lea_A 49 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRELRVQMA 124 (135)
T ss_dssp CEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS----SSCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEEC
Confidence 9999999999999999999999999999999877533 69999999999999999999999999 999999998
Q ss_pred CCCCC
Q 022688 202 DRSPS 206 (293)
Q Consensus 202 ~~~~~ 206 (293)
+..+.
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75443
No 181
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.70 E-value=8.4e-17 Score=119.31 Aligned_cols=75 Identities=25% Similarity=0.482 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.++++|||+|| ++|+++|+++|++||+|..|.+. .++|||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 57899999996 69999999999999999999986 56899999999999999999999999999999999999866
No 182
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=3.1e-17 Score=121.91 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCee--EEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--DIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~--~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
.+.++|||+|||+++|+++|+++|+.| .|+ .|.|.. ++.++|||||+|.++++|++|++ +++..|+|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 457899999999999999999999999 577 888854 36789999999999999999999 578999999999988
Q ss_pred cCC
Q 022688 80 AHG 82 (293)
Q Consensus 80 ~~~ 82 (293)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 183
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=2.7e-17 Score=118.43 Aligned_cols=78 Identities=24% Similarity=0.477 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
.++++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|+.|+. ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4578999999999999999999999999999999965 46678999999999999999999 9999999999999987
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 55
No 184
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.3e-16 Score=111.94 Aligned_cols=84 Identities=19% Similarity=0.334 Sum_probs=74.7
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC-CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
.....+..+|||+|||..+++++|+++|++||.|..+.+..+.. .+||||+|.+.++|..|++.||+..+. ++.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 91 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD----GYRL 91 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEE
Confidence 34455678999999999999999999999999999999977654 479999999999999999999999998 9999
Q ss_pred EeecCCCCC
Q 022688 197 TVKRYDRSP 205 (293)
Q Consensus 197 ~v~~~~~~~ 205 (293)
.|.++...+
T Consensus 92 ~V~~a~~~~ 100 (109)
T 1x4a_A 92 RVEFPRSGR 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEEcccCC
Confidence 999986544
No 185
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.68 E-value=7.8e-16 Score=113.23 Aligned_cols=85 Identities=22% Similarity=0.282 Sum_probs=75.6
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCC
Q 022688 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (293)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g 193 (293)
.....+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|+..||+..+. |
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g 94 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG----M 94 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----T
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 334456789999999999999999999999999999999988754 59999999999999999999999999 9
Q ss_pred ceeEeecCCCCCC
Q 022688 194 GRITVKRYDRSPS 206 (293)
Q Consensus 194 ~~i~v~~~~~~~~ 206 (293)
+.|.|.++.....
T Consensus 95 ~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 95 KRLKVQLKRSKND 107 (115)
T ss_dssp EECEEECCCCSCC
T ss_pred EEEEEEEcCCCCc
Confidence 9999999865443
No 186
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=112.91 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=70.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
.+.+|||+|||.++++++|+++|++||.|..+.++.++.+ |||||+|.+.++|.+|+..|||..+. |+.|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----gr~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ----SKTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC----CEEEEE
Confidence 4579999999999999999999999999999999988654 59999999999999999999999999 999999
Q ss_pred ecCC
Q 022688 199 KRYD 202 (293)
Q Consensus 199 ~~~~ 202 (293)
.+++
T Consensus 94 ~~Ak 97 (99)
T 4fxv_A 94 SYAR 97 (99)
T ss_dssp EECC
T ss_pred EEee
Confidence 9874
No 187
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=115.84 Aligned_cols=74 Identities=26% Similarity=0.414 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC------CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 77 (293)
.++++|||+|||+++|+++|+++|++||+|. +.+..+ +.++|||||+|.+.++|++|++.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 6789999999999999999999999999999 666442 5789999999999999999999883 255555555
Q ss_pred EEc
Q 022688 78 ELA 80 (293)
Q Consensus 78 ~~~ 80 (293)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 188
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=1.1e-16 Score=116.33 Aligned_cols=82 Identities=33% Similarity=0.604 Sum_probs=72.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
....++|||+|||+.+++++|+++|++|| .|..+.+......|||||+|.+.++|++|++.|||..+. |+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~----Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR----GSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET----TEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEE
Confidence 34567999999999999999999999999 899999876556689999999999999999999999999 9999999
Q ss_pred cCCCCCC
Q 022688 200 RYDRSPS 206 (293)
Q Consensus 200 ~~~~~~~ 206 (293)
.+..++.
T Consensus 101 ~a~~~p~ 107 (111)
T 2jvr_A 101 RDDNPPP 107 (111)
T ss_dssp ESCC---
T ss_pred ECCCCCC
Confidence 9876544
No 189
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=2e-16 Score=118.31 Aligned_cols=83 Identities=17% Similarity=0.277 Sum_probs=73.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
...+..+|||+|||..+++++|.++|++||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+. |..
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 93 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQP 93 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS----SSB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 3345789999999999999999999999999999999887533 69999999999999999999999998 999
Q ss_pred eEeecCCCCCC
Q 022688 196 ITVKRYDRSPS 206 (293)
Q Consensus 196 i~v~~~~~~~~ 206 (293)
|.|.++.....
T Consensus 94 l~v~~a~~~~~ 104 (126)
T 3ex7_B 94 ISVDWCFVRGP 104 (126)
T ss_dssp CEEEESEESSS
T ss_pred EEEEEecCCCC
Confidence 99999864443
No 190
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=8.3e-16 Score=113.19 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=72.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
...+|||+|||..+++++|+++|++||.|..+.+..+..+ |||||+|.+.++|..|+..|||..+. |+.|.|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~----g~~l~V~ 81 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH----GKAIKVE 81 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS----SSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEEE
Confidence 4579999999999999999999999999999999987632 79999999999999999999999999 9999999
Q ss_pred cCCCCC
Q 022688 200 RYDRSP 205 (293)
Q Consensus 200 ~~~~~~ 205 (293)
.+....
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 987544
No 191
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=1.7e-16 Score=129.70 Aligned_cols=79 Identities=25% Similarity=0.343 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC-CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
..++|||+|||+++|+++|+++|++||.|..|.|..+ +.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++...
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 4678999999999999999999999999999999653 457899999999999999999999999999999999999754
No 192
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.2e-16 Score=123.42 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.++++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 5678999999999999999999999999999999964 4678899999999999999999999999999999999998
Q ss_pred C
Q 022688 81 H 81 (293)
Q Consensus 81 ~ 81 (293)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
No 193
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.67 E-value=2e-16 Score=123.97 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=74.0
Q ss_pred EEECCHHHHHHHHHhhCCCccC--CceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceE
Q 022688 50 VEFENARDAEDAIRGRDGYNFD--GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRV 127 (293)
Q Consensus 50 V~f~~~~~A~~A~~~l~g~~i~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (293)
.+|.+.++|..|+..+++.... |+.+.+.+..... . ..+... ...........+....+.++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~--~-------~~~~~~------~~s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA--I-------HSYERV------RNEDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc--c-------cCcccc------ccCCCCCCCCCCCCCCCCCEE
Confidence 7899999999999999886554 5555554422110 0 000000 000000011112234567899
Q ss_pred EEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 128 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 128 ~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
||+|||..+++++|.++|.+||.|..|.++.+..+ |||||+|.+.++|..|+..|||..+. |..|.|.++..
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~~ 151 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQTIQVDWCFV 151 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEESEE
T ss_pred EEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEEEEecC
Confidence 99999999999999999999999999999988644 69999999999999999999999998 99999999865
Q ss_pred CCC
Q 022688 204 SPS 206 (293)
Q Consensus 204 ~~~ 206 (293)
.+.
T Consensus 152 ~~~ 154 (165)
T 1rk8_A 152 KGP 154 (165)
T ss_dssp CC-
T ss_pred CCC
Confidence 443
No 194
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=3.3e-16 Score=128.02 Aligned_cols=80 Identities=26% Similarity=0.474 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||.++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999965 3577899999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 876
No 195
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.4e-16 Score=116.23 Aligned_cols=77 Identities=23% Similarity=0.349 Sum_probs=68.3
Q ss_pred CeEEEcCC----CCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECC----HHH----HHHHHH--hhCCCc
Q 022688 7 RTIYVGNL----PSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFEN----ARD----AEDAIR--GRDGYN 69 (293)
Q Consensus 7 ~~l~V~nL----p~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~----~~~----A~~A~~--~l~g~~ 69 (293)
+.|||+|| |+.+++++|+++|+.||+|.+|.+.. ++.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 89999999 99999999999999999999999965 57889999999996 444 788888 789999
Q ss_pred cCCceEEEEEcCCC
Q 022688 70 FDGCRLRVELAHGG 83 (293)
Q Consensus 70 i~g~~l~v~~~~~~ 83 (293)
|+|+.|.|.+....
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987654
No 196
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=3.2e-16 Score=128.76 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCC---------cHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCcc----
Q 022688 4 RFSRTIYVGNLPSDI---------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---- 70 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~---------t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i---- 70 (293)
.++++|||+|||..+ ++++|+++|++||+|.+|.|.. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 568999999999998 8999999999999999999985 489999999999999999999999999
Q ss_pred --------CCceEEEEEcCCC
Q 022688 71 --------DGCRLRVELAHGG 83 (293)
Q Consensus 71 --------~g~~l~v~~~~~~ 83 (293)
.|+.|.|.|+...
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp STTGGGGGGSCCCEEEECC--
T ss_pred cccccccCCCCEEEEEEccCC
Confidence 8999999999865
No 197
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=3.6e-16 Score=123.11 Aligned_cols=77 Identities=22% Similarity=0.440 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
+.++|||+|||+++|+++|+++|++||+|..+.+.. ++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 468999999999999999999999999999999955 45678999999999999999999999999999999999873
No 198
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=5.4e-15 Score=108.68 Aligned_cols=84 Identities=23% Similarity=0.340 Sum_probs=75.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
...+..+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|..|+..|++..+. |+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GRQ 86 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET----TEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 3446789999999999999999999999999999999988643 69999999999999999999999999 999
Q ss_pred eEeecCCCCCCC
Q 022688 196 ITVKRYDRSPSR 207 (293)
Q Consensus 196 i~v~~~~~~~~r 207 (293)
|.|.++......
T Consensus 87 l~V~~a~~~~~~ 98 (115)
T 2dgo_A 87 IRTNWATRKPPA 98 (115)
T ss_dssp CEEEESSCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999999765544
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.65 E-value=6.1e-16 Score=124.66 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEc
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~ 80 (293)
.+.++|||+|||+.+|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5679999999999999999999999999999999965 4667899999999999999999999999999999999999
Q ss_pred CCC
Q 022688 81 HGG 83 (293)
Q Consensus 81 ~~~ 83 (293)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 200
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=3.1e-16 Score=123.94 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.+.++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 356899999999999999999999999999877 667889999999999999999999999999999999999999764
No 201
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.2e-16 Score=112.26 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCC-----------cHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCC
Q 022688 4 RFSRTIYVGNLPSDI-----------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~-----------t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g 72 (293)
.++++|+|.||.... ++++|+++|++||+|..|.| .+..++|||||+|.+.++|++|+..|||..|+|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 579999999994433 26899999999999999976 455689999999999999999999999999999
Q ss_pred ceEEEEEcCCC
Q 022688 73 CRLRVELAHGG 83 (293)
Q Consensus 73 ~~l~v~~~~~~ 83 (293)
+.|.|.++...
T Consensus 92 r~l~v~~a~~~ 102 (112)
T 2dit_A 92 RQITAQAWDGT 102 (112)
T ss_dssp EECEEEECCSC
T ss_pred cEEEEEEeCCC
Confidence 99999998765
No 202
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4e-15 Score=107.13 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=75.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC--cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
...+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|..|+..|++..+. |+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL----GKEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC----CCeEE
Confidence 3446689999999999999999999999999999999987554 79999999999999999999999999 99999
Q ss_pred eecCCCCCC
Q 022688 198 VKRYDRSPS 206 (293)
Q Consensus 198 v~~~~~~~~ 206 (293)
|.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999876444
No 203
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4.2e-15 Score=106.41 Aligned_cols=83 Identities=22% Similarity=0.363 Sum_probs=74.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
...+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|..|+..||+..+. |+.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 88 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK----ENII 88 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS----SCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 3345679999999999999999999999999999999988733 69999999999999999999999999 9999
Q ss_pred EeecCCCCCC
Q 022688 197 TVKRYDRSPS 206 (293)
Q Consensus 197 ~v~~~~~~~~ 206 (293)
.|..+...+.
T Consensus 89 ~v~~a~~~~~ 98 (100)
T 2do4_A 89 KVAISNSGPS 98 (100)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCCCCC
Confidence 9999865443
No 204
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-15 Score=108.31 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=74.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
..+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|.+|+..||+..+. |+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 87 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD----HLIL 87 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET----TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC----CcEE
Confidence 456789999999999999999999999999999999988643 59999999999999999999999999 9999
Q ss_pred EeecCCCCCCC
Q 022688 197 TVKRYDRSPSR 207 (293)
Q Consensus 197 ~v~~~~~~~~r 207 (293)
.|..+.....+
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99998755443
No 205
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=110.90 Aligned_cols=78 Identities=21% Similarity=0.120 Sum_probs=72.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|++.++|.+|+..|||..+. |+.|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~----gr~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM----GNIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEE
Confidence 4579999999999999999999999999999999998764 69999999999999999999999999 999999
Q ss_pred ecCCCC
Q 022688 199 KRYDRS 204 (293)
Q Consensus 199 ~~~~~~ 204 (293)
..+...
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 998643
No 206
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.9e-15 Score=106.65 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=72.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
......+|||+|||..+++++|+++|++||.|. +.++.+...|||||+|.+.++|..|+..|||..+. |+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG----TDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS----SSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 344567999999999999999999999999997 67777777789999999999999999999999999 9999999
Q ss_pred cCCCCC
Q 022688 200 RYDRSP 205 (293)
Q Consensus 200 ~~~~~~ 205 (293)
.+...+
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 986543
No 207
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7e-15 Score=107.87 Aligned_cols=82 Identities=23% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
..+..+|||+|||..+++++|+++|.+||.|..+.++.+..+ |||||+|.+.++|..|+..||+..+. |+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF----DRPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC----CCEEE
Confidence 345689999999999999999999999999999999988654 69999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 022688 198 VKRYDRSPS 206 (293)
Q Consensus 198 v~~~~~~~~ 206 (293)
|..+.....
T Consensus 88 v~~a~~~~~ 96 (114)
T 2do0_A 88 VKMDERALP 96 (114)
T ss_dssp EEECSCCCC
T ss_pred EEEcccCCC
Confidence 999865443
No 208
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.3e-15 Score=107.61 Aligned_cols=83 Identities=17% Similarity=0.269 Sum_probs=73.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeC--CCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD--SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~--~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
...+..+|||+|||..+++++|+++|++||.|..+.+..+ ...|||||+|.+.++|..|+..||+..+. |+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 86 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA----TKPLY 86 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 3446789999999999999999999999999999999987 22269999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 022688 198 VKRYDRSPS 206 (293)
Q Consensus 198 v~~~~~~~~ 206 (293)
|..+.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 999875443
No 209
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=4.1e-16 Score=122.18 Aligned_cols=78 Identities=22% Similarity=0.472 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
++++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++ ++|..|+|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467999999999999999999999999999999964 46789999999999999999999 99999999999999987
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
+.
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 210
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=1.2e-15 Score=119.54 Aligned_cols=77 Identities=30% Similarity=0.493 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCC--ceEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVE 78 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~ 78 (293)
.++++|||+|||.++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999965 45678999999999999999999999999988 999999
Q ss_pred Ec
Q 022688 79 LA 80 (293)
Q Consensus 79 ~~ 80 (293)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 211
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=1.9e-15 Score=103.35 Aligned_cols=72 Identities=13% Similarity=0.132 Sum_probs=67.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
..-|+|+||++.+++++|+++|.+||+|..+++... .|||||+|.+.++|.+|++.||+..+. |+.|+|+.+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~--kGfaFVey~~~~eA~~Ai~~Ln~~~l~----gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN--QGIALCKYTTREEANKAQMALNNCVLA----NTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTEEET----TEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC--CcEEEEEECCHHHHHHHHHHhcCCEEC----CcEEEEEEC
Confidence 358999999999999999999999999999999774 489999999999999999999999999 999999887
No 212
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.4e-15 Score=107.48 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=74.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
...+..+|||+|||..+++++|+++|++||.|..+.+..+..+ |||||+|.+.++|..|+..||+..+. |+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 84 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD----GRE 84 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT----TBC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC----CcE
Confidence 3445689999999999999999999999999999999987653 69999999999999999999999999 999
Q ss_pred eEeecCCCCCC
Q 022688 196 ITVKRYDRSPS 206 (293)
Q Consensus 196 i~v~~~~~~~~ 206 (293)
|.|..+.....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2dnm_A 85 LRVQVARYGRR 95 (103)
T ss_dssp CEEEECSSCCS
T ss_pred EEEEECCcCCC
Confidence 99999875443
No 213
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.63 E-value=1.4e-15 Score=111.83 Aligned_cols=77 Identities=22% Similarity=0.389 Sum_probs=70.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC--cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|..|+..|+|..+. |+.|.|..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~----g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEEC
Confidence 358999999999999999999999999999999988654 69999999999999999999999999 999999988
Q ss_pred CCC
Q 022688 202 DRS 204 (293)
Q Consensus 202 ~~~ 204 (293)
...
T Consensus 81 ~~~ 83 (115)
T 4f25_A 81 KSR 83 (115)
T ss_dssp SCC
T ss_pred CCc
Confidence 643
No 214
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=108.07 Aligned_cols=76 Identities=11% Similarity=0.104 Sum_probs=68.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC--ccCCCcCCCceeEeec
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRITVKR 200 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g--~~~~~~~~g~~i~v~~ 200 (293)
+..+|||+|||+.+++++|+++|++||.|..+.++.++ |||||+|++.++|..|+..|++ ..+. |+.|.|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k--GfaFVeF~~~~~A~~Ai~~l~~~~~~l~----Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK--NQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT--TEEEEEESSHHHHHHHHHHHTTSCCEET----TEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEEEE
Confidence 56799999999999999999999999999999999874 8999999999999999998864 6777 99999998
Q ss_pred CCCC
Q 022688 201 YDRS 204 (293)
Q Consensus 201 ~~~~ 204 (293)
+...
T Consensus 89 A~~~ 92 (105)
T 1sjq_A 89 SNHK 92 (105)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 8643
No 215
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=1.2e-15 Score=122.77 Aligned_cols=79 Identities=23% Similarity=0.402 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. +|..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 568999999999999999999999999999999965 467899999999999999999995 8999999999999998
Q ss_pred CCC
Q 022688 82 GGS 84 (293)
Q Consensus 82 ~~~ 84 (293)
...
T Consensus 182 ~k~ 184 (196)
T 1l3k_A 182 SKQ 184 (196)
T ss_dssp ---
T ss_pred Chh
Confidence 763
No 216
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=1.1e-15 Score=120.59 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccC---CceEEEEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRVEL 79 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~v~~ 79 (293)
+.++|||+|||+++|+++|+++|++||.|..+.+..+ +.++|||||+|.+.++|.+|++.|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 6789999999999999999999999999999999653 567899999999999999999999998776 49999998
Q ss_pred cC
Q 022688 80 AH 81 (293)
Q Consensus 80 ~~ 81 (293)
+.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 217
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-15 Score=106.00 Aligned_cols=78 Identities=18% Similarity=0.208 Sum_probs=71.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
..+..+|||+|||..+++++|+++|++||.|..+.+..+..+ |||||+|.+.++|..|+..||+..+. |+.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 88 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF----GRVI 88 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET----TEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC----CcEE
Confidence 346689999999999999999999999999999999987653 69999999999999999999999999 9999
Q ss_pred EeecCC
Q 022688 197 TVKRYD 202 (293)
Q Consensus 197 ~v~~~~ 202 (293)
.|..++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 998763
No 218
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.1e-15 Score=105.51 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=74.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC--CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~--~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
...+..+|||+|||..+++++|+++|++||.|..+.++.+.. .|||||+|.+.++|..|+..||+..+. |+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 86 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKIE 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEEE
Confidence 344568999999999999999999999999999999998754 379999999999999999999999999 99999
Q ss_pred eecCCCCCC
Q 022688 198 VKRYDRSPS 206 (293)
Q Consensus 198 v~~~~~~~~ 206 (293)
|..+.....
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cq3_A 87 VNNATARVM 95 (103)
T ss_dssp EEECCSSCC
T ss_pred EEEcccCCC
Confidence 999875443
No 219
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.62 E-value=7.6e-15 Score=106.03 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=73.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCC---ce
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR---GR 195 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g---~~ 195 (293)
.+..+|||+|||..+++++|+++|+.||.|..+.+..+..+ |||||+|.+.++|..|+..||+..+. + +.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----gg~~~~ 88 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM----PGASSS 88 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC----TTCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC----CCCCcc
Confidence 35689999999999999999999999999999999988643 69999999999999999999999988 5 89
Q ss_pred eEeecCCCCCCC
Q 022688 196 ITVKRYDRSPSR 207 (293)
Q Consensus 196 i~v~~~~~~~~r 207 (293)
|.|..+...+.+
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999998765543
No 220
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.1e-15 Score=106.87 Aligned_cols=80 Identities=25% Similarity=0.367 Sum_probs=72.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|..|+..||+..+. |+.|.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD----GRQIR 85 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT----SCCCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 35679999999999999999999999999999999987543 69999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 022688 198 VKRYDRSP 205 (293)
Q Consensus 198 v~~~~~~~ 205 (293)
|..+....
T Consensus 86 v~~a~~~~ 93 (102)
T 1x5s_A 86 VDQAGKSS 93 (102)
T ss_dssp EEEEECCC
T ss_pred EEECCCCC
Confidence 99986544
No 221
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.4e-15 Score=105.80 Aligned_cols=82 Identities=27% Similarity=0.367 Sum_probs=73.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
...+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|.+|+..||+..+. |+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY----GKP 86 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS----SCB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 3446789999999999999999999999999999999987643 69999999999999999999999999 999
Q ss_pred eEeecCCCCC
Q 022688 196 ITVKRYDRSP 205 (293)
Q Consensus 196 i~v~~~~~~~ 205 (293)
|.|..+....
T Consensus 87 l~v~~a~~~~ 96 (105)
T 1x5u_A 87 IRVNKASAHN 96 (105)
T ss_dssp CEEEETTTTS
T ss_pred EEEEECCCCC
Confidence 9999986543
No 222
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.8e-15 Score=104.61 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=72.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
...+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|.+|+..||+..+. |+.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 86 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GRR 86 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 3456789999999999999999999999999999999988654 69999999999999999999999999 999
Q ss_pred eEeecCCC
Q 022688 196 ITVKRYDR 203 (293)
Q Consensus 196 i~v~~~~~ 203 (293)
|.|..++.
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99998753
No 223
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=7.2e-15 Score=104.96 Aligned_cols=82 Identities=21% Similarity=0.219 Sum_probs=73.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..||+..+. |+.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ----GRMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS----SCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 35679999999999999999999999999999999887633 69999999999999999999999999 99999
Q ss_pred eecCCCCCCC
Q 022688 198 VKRYDRSPSR 207 (293)
Q Consensus 198 v~~~~~~~~r 207 (293)
|..+......
T Consensus 82 V~~a~~~~~~ 91 (99)
T 1whw_A 82 VLPSTIKKEA 91 (99)
T ss_dssp EEECCCCSTT
T ss_pred EEEcCCCccc
Confidence 9998765443
No 224
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.3e-15 Score=104.66 Aligned_cols=81 Identities=19% Similarity=0.366 Sum_probs=72.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
..+..+|||+|||..+++++|+++|++||.|..+.++.+.. .|||||+|.+.++|..|+. |++..+. |+.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~l 81 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM----GKKV 81 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS----SCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC----CeEE
Confidence 34567999999999999999999999999999999998754 3699999999999999999 9999998 9999
Q ss_pred EeecCCCCCC
Q 022688 197 TVKRYDRSPS 206 (293)
Q Consensus 197 ~v~~~~~~~~ 206 (293)
.|..+.....
T Consensus 82 ~V~~a~~~~~ 91 (99)
T 2dgs_A 82 EVKRAEPRDS 91 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9999875444
No 225
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=1.9e-15 Score=121.33 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcCCC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~~~ 83 (293)
.++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|..|+..+ +..|+|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 48999999999999999999999999999999965 3677899999999999999999855 56999999999998765
No 226
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.2e-15 Score=103.82 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=72.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
+..+|||+|||..+++++|+++|++||.|..+.+..+..+ |||||+|.+.++|..|+..||+..+. |+.|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA----GRPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS----SSCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Confidence 4579999999999999999999999999999999987643 69999999999999999999999999 999999
Q ss_pred ecCCCCCC
Q 022688 199 KRYDRSPS 206 (293)
Q Consensus 199 ~~~~~~~~ 206 (293)
..+.....
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 99865444
No 227
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=3.7e-15 Score=105.64 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=72.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
...+..+|||+|||..+++++|+++|++||.|..+.+..+..+ |||||+|.+.++|.+|+..||+..+. |+.|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 87 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY----GRPI 87 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC----CCEE
Confidence 3446789999999999999999999999999999999988653 69999999999999999999999999 9999
Q ss_pred EeecCCC
Q 022688 197 TVKRYDR 203 (293)
Q Consensus 197 ~v~~~~~ 203 (293)
.|..++.
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9988753
No 228
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=3.9e-15 Score=111.58 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=73.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
...+..+|||+|||..+++++|+++|++||.|..+.++.+.. .|||||+|.+.++|.+|+..|+|..+. |+.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~----g~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GRR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 345678999999999999999999999999999999998754 369999999999999999999999999 999
Q ss_pred eEeecCCCCC
Q 022688 196 ITVKRYDRSP 205 (293)
Q Consensus 196 i~v~~~~~~~ 205 (293)
|.|..+...+
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999987544
No 229
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1e-14 Score=106.42 Aligned_cols=83 Identities=11% Similarity=0.172 Sum_probs=74.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcC------CccCCC
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLD------DTEFRN 189 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~------g~~~~~ 189 (293)
...+..+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|..|+..|| +..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~- 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD- 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS-
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc-
Confidence 344678999999999999999999999999999999998754 3699999999999999999999 99998
Q ss_pred cCCCceeEeecCCCCCC
Q 022688 190 PWARGRITVKRYDRSPS 206 (293)
Q Consensus 190 ~~~g~~i~v~~~~~~~~ 206 (293)
|+.|.|..+.....
T Consensus 90 ---g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 ---GRQLKVDLAVTRDE 103 (111)
T ss_dssp ---SCEEEEECCCCCCC
T ss_pred ---CEEEEEEECCCCcc
Confidence 99999999875443
No 230
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1e-14 Score=105.67 Aligned_cols=84 Identities=18% Similarity=0.391 Sum_probs=74.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeC-CC----CcEEEEEeCChhhHHHHHHhc-CCccCCCcCC
Q 022688 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-SE----GTYGVVDYTNPEDMKYAIRKL-DDTEFRNPWA 192 (293)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~----~g~~fv~f~~~~~A~~a~~~l-~g~~~~~~~~ 192 (293)
....+..+|||+|||..+++++|+++|++||.|..+.++.+ .. .|||||+|.+.++|..|+..| |+..+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~---- 85 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY---- 85 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS----
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC----
Confidence 33456789999999999999999999999999999999887 22 379999999999999999999 999999
Q ss_pred CceeEeecCCCCCC
Q 022688 193 RGRITVKRYDRSPS 206 (293)
Q Consensus 193 g~~i~v~~~~~~~~ 206 (293)
|+.|.|.++.....
T Consensus 86 g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 GRRLVLEWADSEVT 99 (107)
T ss_dssp SCBCEEEECCCCCC
T ss_pred CCEEEEEeCCCCCC
Confidence 99999999876544
No 231
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=2.1e-15 Score=117.92 Aligned_cols=76 Identities=30% Similarity=0.576 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---CCCCCcEEEEEECCHHHHHHHHHhhCCCccCCce--EEEEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--LRVEL 79 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~--l~v~~ 79 (293)
+.++|||+|||+.+|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++.|||..|.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568999999999999999999999999999999965 4567899999999999999999999999999965 88887
Q ss_pred c
Q 022688 80 A 80 (293)
Q Consensus 80 ~ 80 (293)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 232
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.2e-15 Score=105.09 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=73.3
Q ss_pred CCcceEEEcCCCCCCCHHHHH----HHHhhcCCeEEEEEeeCCC-CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 122 HSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~-~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
....+|||+|||..+++++|+ ++|++||.|..+.++.+.. .+||||+|.+.++|.+|+..|||..+. |+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~----gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG----SKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC----CeEE
Confidence 356799999999999999999 9999999999999997754 379999999999999999999999999 9999
Q ss_pred EeecCCCCCC
Q 022688 197 TVKRYDRSPS 206 (293)
Q Consensus 197 ~v~~~~~~~~ 206 (293)
+|..+.....
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999865443
No 233
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=104.15 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=70.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+. |+.|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GRQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEEE
Confidence 35679999999999999999999999999999999988543 69999999999999999999999998 99999
Q ss_pred eecCCCC
Q 022688 198 VKRYDRS 204 (293)
Q Consensus 198 v~~~~~~ 204 (293)
|..+..+
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9988653
No 234
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=105.85 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=69.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcc--CCCcCCCceeEee
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITVK 199 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~--~~~~~~g~~i~v~ 199 (293)
.++.+|||+|||..+++++|.++|++||.|..+.+++.+ |+|||+|++.++|..|+..|++.. +. |+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k--g~AFVef~~~~~A~~Av~~ln~~~~~i~----Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK--RQALVEFEDVLGACNAVNYAADNQIYIA----GHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT--TEEEEEESSHHHHHHHHHHHHHSCEEET----TEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHhcCCCceeC----CcEEEEE
Confidence 467899999999999999999999999999999998654 799999999999999999999886 56 9999999
Q ss_pred cCCC
Q 022688 200 RYDR 203 (293)
Q Consensus 200 ~~~~ 203 (293)
+++.
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 8864
No 235
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=2.4e-15 Score=108.43 Aligned_cols=79 Identities=25% Similarity=0.386 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCC--CCCC--------cHHHHHHHHHhcCCeeEEEEecC-----CCCCcEEEEEECCHHHHHHHHHhhCC
Q 022688 3 GRFSRTIYVGNL--PSDI--------REYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDG 67 (293)
Q Consensus 3 ~~~~~~l~V~nL--p~~~--------t~~~l~~~F~~~G~I~~v~i~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g 67 (293)
+.|+++|.|.|+ |.++ .+++|+++|++||+|.+|.|..+ +.++|+|||+|.++++|.+|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 4444 34789999999999999999654 25789999999999999999999999
Q ss_pred CccCCceEEEEEcC
Q 022688 68 YNFDGCRLRVELAH 81 (293)
Q Consensus 68 ~~i~g~~l~v~~~~ 81 (293)
..|+|+.|.|.++.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999875
No 236
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.3e-15 Score=107.59 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=69.2
Q ss_pred CCcceEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcc--CCCcCCCceeEe
Q 022688 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITV 198 (293)
Q Consensus 122 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~--~~~~~~g~~i~v 198 (293)
.+..+|||+|||+ .+++++|+++|++||.|..+.++.++ +||||+|++.++|..|+..|++.. +. |+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVF----GKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEET----TEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceEC----CcEEEE
Confidence 3578999999999 99999999999999999999998765 799999999999999999998754 67 999999
Q ss_pred ecCCC
Q 022688 199 KRYDR 203 (293)
Q Consensus 199 ~~~~~ 203 (293)
.++..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99864
No 237
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=9.7e-15 Score=104.97 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=69.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCcc--CCCcCCCceeEe
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITV 198 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~--~~~~~~g~~i~v 198 (293)
..+..+|||+|||..+++++|+++|++||.|..+.++.+ .|||||+|++.++|..|+..|++.. +. |+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~----Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIA----GQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSS----SSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEE
Confidence 345689999999999999999999999999999998875 4899999999999999999987654 66 999999
Q ss_pred ecCCCCC
Q 022688 199 KRYDRSP 205 (293)
Q Consensus 199 ~~~~~~~ 205 (293)
.++....
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9986433
No 238
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.60 E-value=4.8e-15 Score=102.78 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=70.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |+|||+|.+.++|..|+..|||..+. |+.|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 35679999999999999999999999999999999887443 69999999999999999999999998 99999
Q ss_pred eecCC
Q 022688 198 VKRYD 202 (293)
Q Consensus 198 v~~~~ 202 (293)
|..++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98763
No 239
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-14 Score=101.66 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
.+..+|||+|||..+++++|+++|++||.|..+.+. .+||||+|.+.++|..|+..||+..+. |+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLH----GVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccC----CcEEEEEEC
Confidence 356799999999999999999999999999999998 379999999999999999999999998 999999998
Q ss_pred CCCCC
Q 022688 202 DRSPS 206 (293)
Q Consensus 202 ~~~~~ 206 (293)
.....
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 75444
No 240
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.8e-15 Score=106.51 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=73.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+..+|||+|||..+++++|+++|++||.|..+.++.+.. .|||||+|.+.++|..|+..||+..+. |+.|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 3567999999999999999999999999999999988744 369999999999999999999999999 99999
Q ss_pred eecCCCCCC
Q 022688 198 VKRYDRSPS 206 (293)
Q Consensus 198 v~~~~~~~~ 206 (293)
|..+.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999875443
No 241
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=1.3e-14 Score=104.37 Aligned_cols=82 Identities=15% Similarity=0.273 Sum_probs=72.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCc
Q 022688 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (293)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~ 194 (293)
.+..+..+|||+|||..+++++|+++|+.|| |..+.++.+..+ |||||+|.+.++|..|+ .||+..+. |+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG----DR 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET----TE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC----Ce
Confidence 3445678999999999999999999999997 999999988753 69999999999999999 89999999 99
Q ss_pred eeEeecCCCCCC
Q 022688 195 RITVKRYDRSPS 206 (293)
Q Consensus 195 ~i~v~~~~~~~~ 206 (293)
.|.|..+.....
T Consensus 84 ~l~V~~a~~~~~ 95 (103)
T 2dng_A 84 SLRVDIAEGRKQ 95 (103)
T ss_dssp ECEEEECCCCCC
T ss_pred EEEEEEecCCCC
Confidence 999999875443
No 242
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=3.6e-15 Score=127.02 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccC-CceEEEEEcC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~~~~ 81 (293)
++++|||+|||.++|+++|+++|++||.|..|.|..+. +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 67899999999999999999999999999999997542 589999999999999999999999999 9999999986
No 243
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9e-15 Score=105.48 Aligned_cols=83 Identities=16% Similarity=0.406 Sum_probs=73.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC-----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCC
Q 022688 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (293)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g 193 (293)
.+..+..+|||+|||..+++++|+++|+.|| |..+.++.+.. .|||||+|.+.++|.+|+ .|++..+. |
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----N 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET----T
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC----C
Confidence 3445678999999999999999999999999 99999998764 369999999999999999 99999998 9
Q ss_pred ceeEeecCCCCCCC
Q 022688 194 GRITVKRYDRSPSR 207 (293)
Q Consensus 194 ~~i~v~~~~~~~~r 207 (293)
+.|.|..+.....+
T Consensus 84 ~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 84 KRIRVDVADQAQDK 97 (104)
T ss_dssp EECEEEECCCCCCC
T ss_pred cEEEEEEccCCCCC
Confidence 99999998765443
No 244
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=4.3e-15 Score=103.71 Aligned_cols=78 Identities=14% Similarity=0.277 Sum_probs=71.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCC-----CCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-----~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
..+|||+|||..+++++|.++|++||.|..+.+..+. ..|+|||+|.+.++|..|+..|||..+. |+.|.|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID----GQEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC----CeEEEE
Confidence 4699999999999999999999999999999998876 3479999999999999999999999999 999999
Q ss_pred ecCCCCC
Q 022688 199 KRYDRSP 205 (293)
Q Consensus 199 ~~~~~~~ 205 (293)
..+....
T Consensus 80 ~~a~~~~ 86 (88)
T 4a8x_A 80 TAVLAPW 86 (88)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9886443
No 245
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.9e-15 Score=105.19 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=72.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEE-EEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
+.++|||+|||..+++++|.++|++||.|..+ .++.+..+ |||||+|.+.++|..|+..||+..+. |+.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC----NRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET----TEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 46799999999999999999999999999999 88887433 69999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 022688 198 VKRYDRSPS 206 (293)
Q Consensus 198 v~~~~~~~~ 206 (293)
|..+.....
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 999875544
No 246
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-14 Score=103.42 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhh-cCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCcc-CCCcCCCce
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRK-AGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTE-FRNPWARGR 195 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~-~~~~~~g~~ 195 (293)
..+..+|||+|||..+++++|+++|.. ||.|..+.++.+..+ |||||+|.+.++|..|+..|++.. +. |+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~----g~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG----SKP 81 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS----SSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC----CEe
Confidence 345689999999999999999999999 999999999988633 699999999999999999999999 88 899
Q ss_pred eEeecCCCCCC
Q 022688 196 ITVKRYDRSPS 206 (293)
Q Consensus 196 i~v~~~~~~~~ 206 (293)
|.|..+.....
T Consensus 82 l~v~~a~~~~~ 92 (104)
T 2dhg_A 82 VRLSVAIPKAS 92 (104)
T ss_dssp CCCCBCCCCCS
T ss_pred EEEEEccCCCc
Confidence 99999865443
No 247
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.59 E-value=1.3e-14 Score=104.97 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=72.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccC---CCcCCC
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEF---RNPWAR 193 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~---~~~~~g 193 (293)
..+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|..|+..||+..+ . +
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~----g 85 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM----N 85 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC----S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC----C
Confidence 345689999999999999999999999999999999987543 6999999999999999999999987 5 8
Q ss_pred ceeEeecCCCCCC
Q 022688 194 GRITVKRYDRSPS 206 (293)
Q Consensus 194 ~~i~v~~~~~~~~ 206 (293)
+.|.|..+.....
T Consensus 86 ~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 86 RPIQVKPADSESR 98 (106)
T ss_dssp SCCEEEECCCCSC
T ss_pred ceEEEEECCcccc
Confidence 9999999875443
No 248
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=6.3e-15 Score=105.71 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=70.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCC
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~ 204 (293)
++|||+|||..+++++|+++|++||.|..+.+..+ ..|||||+|.+.++|..|+..|++..+. |+.|.|..+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVIC----GSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSS----SCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeEC----CcEEEEEEccCC
Confidence 37999999999999999999999999999999988 5589999999999999999999999998 999999998765
Q ss_pred C
Q 022688 205 P 205 (293)
Q Consensus 205 ~ 205 (293)
+
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 249
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=2.9e-15 Score=120.80 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccC-CceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~~~~ 81 (293)
.++++|||+|||..+|+++|+++|+.|| .|..|.+..+ .+|+|||+|.+.++|.+|+..|||..|+ |+.|.|.|++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3589999999999999999999999999 9999999653 3799999999999999999999999999 9999999987
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 250
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.5e-15 Score=107.97 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=71.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC--ccCCCcCCCceeE
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRIT 197 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g--~~~~~~~~g~~i~ 197 (293)
...+..+|||+|||+.+++++|+++|++||.|..+.++.++ |||||+|++.++|..|+..|++ ..+. |+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k--G~AFVeF~~~e~A~~Ai~~l~~~~~~l~----Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK--NQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG--TEEEEECSCHHHHHHHHHHHHHHCCCBT----TBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC--CEEEEEECCHHHHHHHHHHhccCCceEC----CeEEE
Confidence 34567899999999999999999999999999999999874 8999999999999999999885 5677 99999
Q ss_pred eecCCCCC
Q 022688 198 VKRYDRSP 205 (293)
Q Consensus 198 v~~~~~~~ 205 (293)
|.++....
T Consensus 101 V~~a~~k~ 108 (119)
T 2ad9_A 101 IQFSNHKE 108 (119)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99986433
No 251
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.59 E-value=2e-14 Score=103.39 Aligned_cols=77 Identities=10% Similarity=0.211 Sum_probs=70.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
+..+|||+|||..+++++|+++|++||.|..+.+++ +||||+|.+.++|.+|+..||+..+. |+.|.|..+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLE----GENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEET----TEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccC----CCEEEEEEcC
Confidence 457999999999999999999999999999999885 59999999999999999999999999 9999999987
Q ss_pred CCCCC
Q 022688 203 RSPSR 207 (293)
Q Consensus 203 ~~~~r 207 (293)
.....
T Consensus 82 ~~~~~ 86 (103)
T 2dgu_A 82 PPDQK 86 (103)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 55443
No 252
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.8e-15 Score=105.63 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=73.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
..+..+|||+|||..+++++|.++|+.||.|..+.+..+..+ |||||+|.+.++|..|+..|||..+. |+.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC----CcEE
Confidence 345679999999999999999999999999999999988664 69999999999999999999999999 9999
Q ss_pred EeecCCCC
Q 022688 197 TVKRYDRS 204 (293)
Q Consensus 197 ~v~~~~~~ 204 (293)
.|..+...
T Consensus 96 ~V~~a~~~ 103 (106)
T 1p27_B 96 SVDWCFVR 103 (106)
T ss_dssp EEEESEES
T ss_pred EEEeecCC
Confidence 99988643
No 253
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.59 E-value=9.1e-15 Score=100.84 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=70.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
.+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+. |+.|.|..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC----CcEEEEEe
Confidence 58999999999999999999999999999999988553 69999999999999999999999998 99999998
Q ss_pred CCCC
Q 022688 201 YDRS 204 (293)
Q Consensus 201 ~~~~ 204 (293)
+...
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 8653
No 254
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-14 Score=104.06 Aligned_cols=79 Identities=10% Similarity=0.100 Sum_probs=69.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcC--CccCCCcCCCceeE
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARGRIT 197 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~--g~~~~~~~~g~~i~ 197 (293)
...+..+|||+|||..+++++|+++|++||.|..+.++.+ .|||||+|++.++|..|+..|+ +..+. |+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLR----NQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEET----TEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CcEEE
Confidence 3446789999999999999999999999999999998876 4899999999999999999874 56677 99999
Q ss_pred eecCCCC
Q 022688 198 VKRYDRS 204 (293)
Q Consensus 198 v~~~~~~ 204 (293)
|.++...
T Consensus 85 V~~a~~~ 91 (101)
T 2cq1_A 85 IQYSNHK 91 (101)
T ss_dssp EEECSCS
T ss_pred EEEcCcc
Confidence 9998643
No 255
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-14 Score=103.59 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=72.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEE--------EEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCcc
Q 022688 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTE 186 (293)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~ 186 (293)
.+..+..+|||+|||..+++++|+++|++||.|.. +.+..+..+ |||||+|.+.++|..|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456789999999999999999999999999999 999988653 699999999999999999999999
Q ss_pred CCCcCCCceeEeecCC
Q 022688 187 FRNPWARGRITVKRYD 202 (293)
Q Consensus 187 ~~~~~~g~~i~v~~~~ 202 (293)
+. |+.|+|..++
T Consensus 88 ~~----g~~l~V~~A~ 99 (99)
T 2la6_A 88 FS----GNPIKVSFAT 99 (99)
T ss_dssp SS----SSBCEEEECC
T ss_pred eC----CcEEEEEecC
Confidence 98 9999998763
No 256
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.59 E-value=1.5e-14 Score=101.78 Aligned_cols=80 Identities=25% Similarity=0.482 Sum_probs=71.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC--CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~--~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
.+..+|||+|||..+++++|+++|++||.|..+.+..+.. .|||||+|.+.++|..|+..||+..+. |+.|.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~ 81 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS----GREIDVR 81 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT----TBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 4567999999999999999999999999999999988532 269999999999999999999999999 9999999
Q ss_pred cCCCCC
Q 022688 200 RYDRSP 205 (293)
Q Consensus 200 ~~~~~~ 205 (293)
.+....
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 886543
No 257
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=6.6e-15 Score=121.58 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccC-CceEEEEEcC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~~~~ 81 (293)
.++++|||+|||+++|+++|+++|++|| .|..|.+... .+|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 3579999999999999999999999999 9999999543 3789999999999999999999999999 9999999987
Q ss_pred CC
Q 022688 82 GG 83 (293)
Q Consensus 82 ~~ 83 (293)
+.
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 258
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.58 E-value=2.1e-15 Score=106.03 Aligned_cols=77 Identities=16% Similarity=0.325 Sum_probs=68.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC-CeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcC-CccCCCcCCCceeEe
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLD-DTEFRNPWARGRITV 198 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~-g~~~~~~~~g~~i~v 198 (293)
.+|||+|||.++|+++|+++|++|| .|..+.++.++.+ |||||+|.+.++|.+|++.++ +..+. |+.|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~----gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL----GQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET----TEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC----CEEEEE
Confidence 4899999999999999999999999 8999999887543 699999999999999999874 55778 999999
Q ss_pred ecCCCCC
Q 022688 199 KRYDRSP 205 (293)
Q Consensus 199 ~~~~~~~ 205 (293)
.++...+
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9886443
No 259
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.7e-15 Score=107.06 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=69.0
Q ss_pred CCCCcceEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC--ccCCCcCCCcee
Q 022688 120 SRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRI 196 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g--~~~~~~~~g~~i 196 (293)
...+..+|||+|||.+ +++++|+++|++||.|..+.++..+ |||||+|++.++|..|+..|++ ..+. |+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~l~----Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK--SQAFIEMETREDAMAMVDHCLKKALWFQ----GRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT--TEEEEECSSHHHHHHHHHHHHHSCCCSS----SSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC--CEEEEEECCHHHHHHHHHHhccCCceEC----CEEE
Confidence 3456789999999998 9999999999999999999998654 8999999999999999998865 4577 9999
Q ss_pred EeecCCC
Q 022688 197 TVKRYDR 203 (293)
Q Consensus 197 ~v~~~~~ 203 (293)
.|.++..
T Consensus 95 ~V~~a~~ 101 (112)
T 1x4f_A 95 KVDLSEK 101 (112)
T ss_dssp EEEEECS
T ss_pred EEEECcc
Confidence 9998864
No 260
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=101.55 Aligned_cols=77 Identities=22% Similarity=0.399 Sum_probs=70.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
.+..+|||+|||..+++++|+++|++||.|..+.+.. +||||+|.+.++|..|+..|||..+. |+.|.|..+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVK----GKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 4567999999999999999999999999999999985 49999999999999999999999999 999999998
Q ss_pred CCCCC
Q 022688 202 DRSPS 206 (293)
Q Consensus 202 ~~~~~ 206 (293)
.....
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75543
No 261
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=103.88 Aligned_cols=79 Identities=20% Similarity=0.391 Sum_probs=71.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC-------CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-------~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
+..+|||+|||..+++++|+++|++||.|..+.+..+.. .|||||+|.+.++|..|+..||+..+. |+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD----GHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET----TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 457999999999999999999999999999999987654 269999999999999999999999999 999
Q ss_pred eEeecCCCCC
Q 022688 196 ITVKRYDRSP 205 (293)
Q Consensus 196 i~v~~~~~~~ 205 (293)
|.|..+....
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 9999986543
No 262
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.58 E-value=2.4e-14 Score=103.88 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=73.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCc
Q 022688 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (293)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~ 194 (293)
....+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|..|+..|+|..+. |+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~----g~ 96 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA----GR 96 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS----SS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 33456689999999999999999999999999999999988654 69999999999999999999999999 99
Q ss_pred eeEeecCCCC
Q 022688 195 RITVKRYDRS 204 (293)
Q Consensus 195 ~i~v~~~~~~ 204 (293)
.|.|..+...
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 9999988643
No 263
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.9e-14 Score=102.80 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=72.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
..+..+|||+|||..+++++|+++|++||.|..+.+..+. |||||+|.+.++|.+|+..||+..+. |+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k--g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK--GFGFIRLETRTLAEIAKVELDNMPLR----GKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT--TEEEEECSSSHHHHHHHHHHTTCCBT----TBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC--CEEEEEECCHHHHHHHHHHhCCCEeC----CceEEEEE
Confidence 3456799999999999999999999999999999998764 89999999999999999999999999 99999999
Q ss_pred CCCCC
Q 022688 201 YDRSP 205 (293)
Q Consensus 201 ~~~~~ 205 (293)
+....
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 86544
No 264
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=3.2e-14 Score=103.65 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=69.1
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 122 HSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 122 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
....+|||+|||.. +++++|+++|++||.|..+.+ ..|||||+|.+.++|..|+..|++..+. |+.|.|..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLA----GQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEET----TEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 34579999999999 999999999999999999998 2479999999999999999999999999 99999999
Q ss_pred CCCCC
Q 022688 201 YDRSP 205 (293)
Q Consensus 201 ~~~~~ 205 (293)
+....
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86433
No 265
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.58 E-value=3.7e-14 Score=107.75 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=74.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
......+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|+..||+..+. |+.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL----NKR 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS----SCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 3455689999999999999999999999999999999988654 69999999999999999999999999 999
Q ss_pred eEeecCCCCCC
Q 022688 196 ITVKRYDRSPS 206 (293)
Q Consensus 196 i~v~~~~~~~~ 206 (293)
|.|..+.....
T Consensus 114 l~v~~a~~~~~ 124 (139)
T 1u6f_A 114 LKVALAASGHQ 124 (139)
T ss_dssp EEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999875443
No 266
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=100.67 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=69.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhc-CCccCCCcCCCceeEee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL-DDTEFRNPWARGRITVK 199 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l-~g~~~~~~~~g~~i~v~ 199 (293)
..+..+|||+|||..+++++|+++|++||.|..+.+..+. |||||+|.+.++|..|+..| ++..+. |+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k--g~afV~f~~~~~A~~a~~~l~~~~~~~----g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ--QCAFIQFATRQAAEVAAEKSFNKLIVN----GRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHTTTTTCEET----TEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC--CEEEEEECCHHHHHHHHHHhcCCeeEC----CCEEEEE
Confidence 3456799999999999999999999999999999999864 79999999999999999999 999998 8999888
Q ss_pred cCC
Q 022688 200 RYD 202 (293)
Q Consensus 200 ~~~ 202 (293)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 763
No 267
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2e-14 Score=101.25 Aligned_cols=78 Identities=24% Similarity=0.374 Sum_probs=71.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
..+..+|||+|||..+++++|+++|++||.|..+.+.+ +||||+|.+.++|..|+..||+..+. |+.|.|..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQ----GKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEEEE
Confidence 34568999999999999999999999999999999985 49999999999999999999999999 99999999
Q ss_pred CCCCCC
Q 022688 201 YDRSPS 206 (293)
Q Consensus 201 ~~~~~~ 206 (293)
+.....
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 865443
No 268
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.6e-14 Score=100.94 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=71.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
.+..+|||+|||..+++++|+++|++||.|..+.+..+ .+||||+|.+.++|.+|+..||+..+.. .++.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~--~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGG--PDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSS--SSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCC--CCcEEEEEEC
Confidence 35679999999999999999999999999999999876 4799999999999999999999998861 2688899988
Q ss_pred CCCCC
Q 022688 202 DRSPS 206 (293)
Q Consensus 202 ~~~~~ 206 (293)
...+.
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75543
No 269
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-14 Score=104.41 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=72.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
...++|||+|||..+++++|+++|++||.|..+.+..+ .|||||+|.+.++|..|+..|+|..+. |+.|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIE----GHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEET----TEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEEC----CcEEEEEec
Confidence 45679999999999999999999999999999999987 489999999999999999999999999 999999998
Q ss_pred CCCCC
Q 022688 202 DRSPS 206 (293)
Q Consensus 202 ~~~~~ 206 (293)
...+.
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 76544
No 270
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.2e-14 Score=103.53 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=71.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
...+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|.+|+..|++ .+. |+.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~----g~~ 87 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID----GRK 87 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC----CEE
Confidence 3456789999999999999999999999999999999987643 6999999999999999999998 787 999
Q ss_pred eEeecCCC
Q 022688 196 ITVKRYDR 203 (293)
Q Consensus 196 i~v~~~~~ 203 (293)
|.|..+..
T Consensus 88 l~V~~a~~ 95 (116)
T 2cqd_A 88 ANVNLAYL 95 (116)
T ss_dssp CEEEESTT
T ss_pred EEEEEccc
Confidence 99999864
No 271
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=3.5e-15 Score=120.94 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCe--eEEEEecC-CCCCcEEEEEECCHHHHHHHHHhhCCCccCCc----eEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI--LDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC----RLR 76 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I--~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~----~l~ 76 (293)
.++++|||+|||+++|+++|+++|++||.| ..+.+..+ +..+|+|||+|.+.++|.+||..|||..|.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 367899999999999999999999999999 88888654 35569999999999999999999999999886 677
Q ss_pred EEEc
Q 022688 77 VELA 80 (293)
Q Consensus 77 v~~~ 80 (293)
|.++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7765
No 272
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.57 E-value=1e-14 Score=103.53 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=71.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
+..+|||+|||..+++++|.++|++||.|..+.+..+.. .|||||+|.+.++|..|+..|+|..+. |+.|.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG----SRFLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEE
Confidence 356999999999999999999999999999999998854 379999999999999999999999999 999999
Q ss_pred ecCCCC
Q 022688 199 KRYDRS 204 (293)
Q Consensus 199 ~~~~~~ 204 (293)
..+...
T Consensus 77 ~~a~~~ 82 (96)
T 2x1f_A 77 GYSSNS 82 (96)
T ss_dssp EECSCS
T ss_pred EEcCCC
Confidence 998654
No 273
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.8e-14 Score=102.21 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=72.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEE-EEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
....++|||+|||..+++++|+++|.+||.|..+ .++.+..++.|||+|.+.++|..|+..|||..+. |+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE----NFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 3456799999999999999999999999999999 5888887788999999999999999999999999 9999999
Q ss_pred cCCCC
Q 022688 200 RYDRS 204 (293)
Q Consensus 200 ~~~~~ 204 (293)
.+...
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 88643
No 274
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.57 E-value=2.6e-14 Score=105.45 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=71.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCc
Q 022688 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (293)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~ 194 (293)
....+.++|||+|||..+++++|+++|++||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. |+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 110 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG----TK 110 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET----TE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 3445678999999999999999999999999999999988754 369999999999999999999999998 99
Q ss_pred eeEeecC
Q 022688 195 RITVKRY 201 (293)
Q Consensus 195 ~i~v~~~ 201 (293)
.|+|.++
T Consensus 111 ~l~V~~a 117 (118)
T 2khc_A 111 RLKVQLK 117 (118)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 9998876
No 275
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-14 Score=103.12 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
..+..+|||+|||..+++++|+++|.+||.|..+.++.+..+ |||||+|.+.++|..|+.. ++..+. |+.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~----g~~l 87 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD----GRNI 87 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET----TEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC----CEEE
Confidence 446689999999999999999999999999999999998654 6999999999999999998 999999 9999
Q ss_pred EeecCCCCC
Q 022688 197 TVKRYDRSP 205 (293)
Q Consensus 197 ~v~~~~~~~ 205 (293)
.|..+....
T Consensus 88 ~V~~a~~~~ 96 (105)
T 2dh8_A 88 DPKPCTPRG 96 (105)
T ss_dssp BCCCSCCSS
T ss_pred EEEEccCCC
Confidence 999886443
No 276
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.4e-14 Score=100.83 Aligned_cols=77 Identities=23% Similarity=0.231 Sum_probs=69.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhc--CCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
..+..+|||+|||..+++++|+++|++| |.|..+.+.+ |||||+|.+.++|..|+..||+..+. |+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLD----GSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEET----TEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeC----CcEEEE
Confidence 3456899999999999999999999999 9999988764 69999999999999999999999999 999999
Q ss_pred ecCCCCC
Q 022688 199 KRYDRSP 205 (293)
Q Consensus 199 ~~~~~~~ 205 (293)
..+....
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9986533
No 277
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.1e-14 Score=102.53 Aligned_cols=79 Identities=9% Similarity=0.131 Sum_probs=71.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeE-EEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCce-
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVC-FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR- 195 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~- 195 (293)
.+..+|||+|||..+++++|+++|++||.|. .+.++.++.+ |||||+|.+.++|..|+..|||..+. |+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~~ 82 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP----GATP 82 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES----SCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC----CCCc
Confidence 3567999999999999999999999999999 9999988644 69999999999999999999999998 676
Q ss_pred ---eEeecCCCC
Q 022688 196 ---ITVKRYDRS 204 (293)
Q Consensus 196 ---i~v~~~~~~ 204 (293)
|+|.++...
T Consensus 83 ~~~l~v~~a~~~ 94 (99)
T 2div_A 83 AKRFKLNYATYS 94 (99)
T ss_dssp CEECCEEETTCC
T ss_pred ceeEEEeecCCC
Confidence 889888644
No 278
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2e-14 Score=105.29 Aligned_cols=82 Identities=24% Similarity=0.423 Sum_probs=73.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeE--------EEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--------FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
..+.++|||+|||..+++++|+++|+.||.|. .+.++.+..+ |||||+|.+.++|..|+..||+..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44678999999999999999999999999998 6888887543 69999999999999999999999999
Q ss_pred CcCCCceeEeecCCCCCC
Q 022688 189 NPWARGRITVKRYDRSPS 206 (293)
Q Consensus 189 ~~~~g~~i~v~~~~~~~~ 206 (293)
|+.|.|..+.....
T Consensus 92 ----g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 ----GSKLKVSLARKKPP 105 (113)
T ss_dssp ----TEECEEECSSCCCC
T ss_pred ----CCEEEEEECCCCCC
Confidence 99999999875544
No 279
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=1.2e-14 Score=105.46 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=71.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
..+..+|||+|||..+++++|+++|++||.|..+.+. .|||||+|.+.++|..|+..|||..+. |+.|.|..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA----NQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET----TEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 3466899999999999999999999999999999998 479999999999999999999999998 99999999
Q ss_pred CCCCCCC
Q 022688 201 YDRSPSR 207 (293)
Q Consensus 201 ~~~~~~r 207 (293)
+...+.+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 8765443
No 280
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=5e-15 Score=103.89 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=66.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC--CeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
.+|||+|||..+++++|+++|++|| .|..+.++.+..+ |||||+|.+.++|.+|++.|||..+. |+.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~----gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS----SCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC----CEEEEE
Confidence 4799999999999999999999999 9999999998654 59999999999999999999999999 999999
Q ss_pred ecCCCCC
Q 022688 199 KRYDRSP 205 (293)
Q Consensus 199 ~~~~~~~ 205 (293)
..+...+
T Consensus 78 ~~~~~~~ 84 (90)
T 3p5t_L 78 TPSNKLE 84 (90)
T ss_dssp CCC----
T ss_pred EECCCCc
Confidence 9887543
No 281
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.56 E-value=1.2e-14 Score=105.87 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=73.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
..+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+. |+.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CcEE
Confidence 346689999999999999999999999999999999887543 69999999999999999999999998 9999
Q ss_pred EeecCCCCC
Q 022688 197 TVKRYDRSP 205 (293)
Q Consensus 197 ~v~~~~~~~ 205 (293)
.|..+...+
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999886443
No 282
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.2e-14 Score=102.56 Aligned_cols=82 Identities=9% Similarity=0.069 Sum_probs=72.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCe----EEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDV----CFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+..+|||+|||..+++++|.++|..||.| ..+.+......|||||+|.+.++|..|+..||+..+. |+.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY----GKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS----SCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 456899999999999999999999999998 6777775566689999999999999999999999998 99999
Q ss_pred eecCCCCCCC
Q 022688 198 VKRYDRSPSR 207 (293)
Q Consensus 198 v~~~~~~~~r 207 (293)
|.++.....+
T Consensus 99 v~~a~~~~~~ 108 (115)
T 2cpx_A 99 IEFGKNKKQR 108 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEccCCCCC
Confidence 9998765443
No 283
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.56 E-value=6.3e-15 Score=104.15 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=68.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCC--eEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
.-.+|||+|||+.+|+++|+++|++||. +..|.++.++.+ |||||+|.+.++|.+|++.|||....-...|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3459999999999999999999999995 678888887654 6999999999999999999999852211229999
Q ss_pred EeecCCC
Q 022688 197 TVKRYDR 203 (293)
Q Consensus 197 ~v~~~~~ 203 (293)
.|.+++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9998863
No 284
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.1e-14 Score=104.83 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=73.0
Q ss_pred CCcceEEEcCCCCCCCHHHHH---HHHhhcCCeEEEEEeeCCCC-------cEEEEEeCChhhHHHHHHhcCCccCCCcC
Q 022688 122 HSEYRVIVRGLPSSASWQDLK---DHMRKAGDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~---~~f~~~G~i~~~~~~~~~~~-------g~~fv~f~~~~~A~~a~~~l~g~~~~~~~ 191 (293)
....+|||+|||..+++++|. ++|++||.|..+.++.+..+ |||||+|.+.++|.+|+..|||..+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~--- 89 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD--- 89 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET---
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC---
Confidence 456799999999999999999 99999999999999887642 69999999999999999999999999
Q ss_pred CCceeEeecCCCCC
Q 022688 192 ARGRITVKRYDRSP 205 (293)
Q Consensus 192 ~g~~i~v~~~~~~~ 205 (293)
|+.|.|..+...+
T Consensus 90 -gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 -GRTLKASLGTTKY 102 (111)
T ss_dssp -TEEEEEESCCCCS
T ss_pred -CEEEEEEeccccc
Confidence 9999999987554
No 285
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.56 E-value=1.9e-14 Score=104.29 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=71.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
...+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|.+|+..||+..+. |+.|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 100 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD----GRPM 100 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEE
Confidence 3456789999999999999999999999999999999988643 59999999999999999999999998 9999
Q ss_pred EeecCC
Q 022688 197 TVKRYD 202 (293)
Q Consensus 197 ~v~~~~ 202 (293)
.|..+.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 998764
No 286
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.55 E-value=9.4e-15 Score=110.15 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=71.7
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCC---eEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcC
Q 022688 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (293)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~ 191 (293)
.++.....+|||+|||+++|+++|+++|+.||. |..+.++.+..+ |||||+|.+.++|.+|+. ||+..+.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~--- 113 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG--- 113 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS---
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC---
Confidence 344556789999999999999999999999999 888999887654 699999999999999999 9999999
Q ss_pred CCceeEeecCC
Q 022688 192 ARGRITVKRYD 202 (293)
Q Consensus 192 ~g~~i~v~~~~ 202 (293)
|+.|.|..+.
T Consensus 114 -gr~i~V~~a~ 123 (136)
T 2hgl_A 114 -HRYIEVFKSH 123 (136)
T ss_dssp -SSEEEEEECC
T ss_pred -CEEEEEEECC
Confidence 9999998764
No 287
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.55 E-value=1.2e-14 Score=125.69 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=68.0
Q ss_pred CCCCCCeEEEcC--CCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccC---Cc--e
Q 022688 2 SGRFSRTIYVGN--LPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD---GC--R 74 (293)
Q Consensus 2 ~~~~~~~l~V~n--Lp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~---g~--~ 74 (293)
++.|+++|||+| |+..+|+++|+++|++||+|..|.+.. ++|||||+|.+.++|++|++.|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 568999999999 578999999999999999999987753 5899999999999999999999998873 45 6
Q ss_pred EEEEEcC
Q 022688 75 LRVELAH 81 (293)
Q Consensus 75 l~v~~~~ 81 (293)
|.|.|+.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7888774
No 288
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=7.4e-14 Score=99.34 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCC-------CCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEE
Q 022688 4 RFSRTIYVGNLP-------SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (293)
Q Consensus 4 ~~~~~l~V~nLp-------~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 76 (293)
...+.|.|.... .++|+++|+++|++||+|..|.|. +.++|||||+|.+.++|+.|++.+++ +.|++|.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 445677887765 458999999999999999999997 46799999999999999999997554 6799999
Q ss_pred EEEcCCCC
Q 022688 77 VELAHGGS 84 (293)
Q Consensus 77 v~~~~~~~ 84 (293)
|.|+....
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99988663
No 289
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=4.6e-15 Score=108.99 Aligned_cols=78 Identities=24% Similarity=0.274 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCC--CC---CcHHHHHHHHHhcCCeeEEEEecC-------CCCCcEEEEEECCHHHHHHHHHhhCCCccC
Q 022688 4 RFSRTIYVGNLP--SD---IREYEVEDLFYKYGRILDIELKIP-------PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (293)
Q Consensus 4 ~~~~~l~V~nLp--~~---~t~~~l~~~F~~~G~I~~v~i~~~-------~~~~g~afV~f~~~~~A~~A~~~l~g~~i~ 71 (293)
.|+++|+|.|+- .+ -.+++|++.|++||+|.+|.|..+ +.++|+|||+|.++++|.+|++.|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 489999999993 22 247899999999999999999543 235699999999999999999999999999
Q ss_pred CceEEEEEcC
Q 022688 72 GCRLRVELAH 81 (293)
Q Consensus 72 g~~l~v~~~~ 81 (293)
|+.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999975
No 290
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=104.80 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=72.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC--CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~--~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
.....+|||+|||..+++++|+++|++||.|..+.+..+.. .|||||+|.+.++|.+|+..|+|..+. |+.|.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V 101 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKIEV 101 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEE
Confidence 34567999999999999999999999999999999987754 379999999999999999999999999 999999
Q ss_pred ecCCC
Q 022688 199 KRYDR 203 (293)
Q Consensus 199 ~~~~~ 203 (293)
..+..
T Consensus 102 ~~a~~ 106 (109)
T 2err_A 102 NNATA 106 (109)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98764
No 291
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-13 Score=101.48 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=72.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcC----CC
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW----AR 193 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~----~g 193 (293)
..+..+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+.... .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345689999999999999999999999999999999998633 69999999999999999999999996332 47
Q ss_pred ceeEeecCC
Q 022688 194 GRITVKRYD 202 (293)
Q Consensus 194 ~~i~v~~~~ 202 (293)
+.|.|.++.
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 788888876
No 292
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.55 E-value=1.1e-14 Score=104.23 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=70.1
Q ss_pred CcceEEEcCCCC------CCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCC
Q 022688 123 SEYRVIVRGLPS------SASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (293)
Q Consensus 123 ~~~~l~v~nl~~------~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~ 192 (293)
..++|||+|||. .+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~---- 80 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD---- 80 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS----
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC----
Confidence 357999999999 9999999999999999999999988763 69999999999999999999999999
Q ss_pred C-ceeEeecCC
Q 022688 193 R-GRITVKRYD 202 (293)
Q Consensus 193 g-~~i~v~~~~ 202 (293)
| +.|.|..+.
T Consensus 81 g~r~l~V~~a~ 91 (100)
T 3ns6_A 81 LKHRLFLYTMK 91 (100)
T ss_dssp SSCBCEEEESH
T ss_pred CCeEEEEEECc
Confidence 8 999998764
No 293
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=7.5e-14 Score=106.11 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=70.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
...+..+|||+|||..+++++|+++|++||.|..+.++.++. .|||||+|.+.++|.+|++.|||..+. |+.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 134 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRT 134 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET----TEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 344678999999999999999999999999999999988744 379999999999999999999999999 999
Q ss_pred eEeecC
Q 022688 196 ITVKRY 201 (293)
Q Consensus 196 i~v~~~ 201 (293)
|.|..+
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 998764
No 294
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.7e-14 Score=102.55 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=68.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
....+|||+|||.++++++|.++|++||.|..+.++.+.. .|||||+|.+.++|..|+. +++..+. |+.|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~----gr~l~V 83 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK----ETDLLI 83 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT----TTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC----CEEEEE
Confidence 3467999999999999999999999999999999998764 3799999999999999999 8999998 899988
Q ss_pred ecC
Q 022688 199 KRY 201 (293)
Q Consensus 199 ~~~ 201 (293)
...
T Consensus 84 ~~~ 86 (103)
T 1s79_A 84 LFK 86 (103)
T ss_dssp EEH
T ss_pred EEc
Confidence 754
No 295
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.54 E-value=4.9e-14 Score=109.30 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=72.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+..+|||+|||..+++++|.++|++||.|..|.++.+..+ +||||+|.+.++|.+|+..||+..+. +..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD----DRIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 35679999999999999999999999999999999988754 59999999999999999999999998 99999
Q ss_pred eecCCCC
Q 022688 198 VKRYDRS 204 (293)
Q Consensus 198 v~~~~~~ 204 (293)
|.++...
T Consensus 113 V~~a~~~ 119 (156)
T 1h2v_Z 113 TDWDAGF 119 (156)
T ss_dssp EEEESCC
T ss_pred EEECCCC
Confidence 9999753
No 296
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=102.36 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=69.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
....+|||+|||..+++++|+++|.+||.|..+.++.+..+ |||||+|.+.++|.+|+..||+..+. |+.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 88 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKVK 88 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC----CeEEE
Confidence 34679999999999999999999999999987766665443 69999999999999999999999999 99999
Q ss_pred eecCCCC
Q 022688 198 VKRYDRS 204 (293)
Q Consensus 198 v~~~~~~ 204 (293)
|..+..+
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9988643
No 297
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.54 E-value=5.1e-14 Score=103.42 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=71.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC-cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
.+..+|||+|||..+++++|.++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+. |+.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS----NRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS----SCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 35679999999999999999999999999999999876543 79999999999999999999999998 99999998
Q ss_pred CCC
Q 022688 201 YDR 203 (293)
Q Consensus 201 ~~~ 203 (293)
+..
T Consensus 82 a~~ 84 (115)
T 3lqv_A 82 YNA 84 (115)
T ss_dssp CCH
T ss_pred ecC
Confidence 863
No 298
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=5.7e-14 Score=104.60 Aligned_cols=79 Identities=9% Similarity=0.162 Sum_probs=69.6
Q ss_pred CCcceEEEcCCCCCCCHHHHH----HHHhhcCCeEEEEEeeC-CCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 122 HSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~-~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
.+..+|||+|||..+++++|+ ++|++||.|..|.+... ...|||||+|.+.++|..|+..|||..+. |+.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~----gr~l 102 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ----GNPL 102 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT----TSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC----CCEE
Confidence 456799999999999999876 69999999999888653 33489999999999999999999999999 9999
Q ss_pred EeecCCCC
Q 022688 197 TVKRYDRS 204 (293)
Q Consensus 197 ~v~~~~~~ 204 (293)
.|.++...
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99998653
No 299
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=6.3e-14 Score=107.93 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=70.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
...|||+||++.+++++|+++|++||.|..+.+......|||||+|++.++|..|++.|||..+.+ .++.|+|.+++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g--~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLRIDFSKL 123 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS--SCSCEEEEECSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC--CCcEEEEEEecC
Confidence 457899999999999999999999999999999876666799999999999999999999999961 148999999864
Q ss_pred C
Q 022688 204 S 204 (293)
Q Consensus 204 ~ 204 (293)
.
T Consensus 124 ~ 124 (164)
T 1sjr_A 124 T 124 (164)
T ss_dssp S
T ss_pred C
Confidence 3
No 300
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.4e-14 Score=101.83 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=67.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeC---CCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD---SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~---~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
..+..+|||+|||..+++++|+++|.+||.| .++.+ ...|||||+|.+.++|.+|+..||+..+. |+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 84 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE----GRAIR 84 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET----TEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC----CeEEE
Confidence 3456899999999999999999999999988 34443 23379999999999999999999999999 99999
Q ss_pred eecCCCC
Q 022688 198 VKRYDRS 204 (293)
Q Consensus 198 v~~~~~~ 204 (293)
|..+...
T Consensus 85 v~~a~~~ 91 (101)
T 2fc9_A 85 LELQGPR 91 (101)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 9998654
No 301
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=105.14 Aligned_cols=75 Identities=15% Similarity=0.315 Sum_probs=69.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
..++|||+|||..+++++|+++|++||.|..+.+... .+||||+|.+.++|..|+..|||..+. |+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG--GITAIVEFLEPLEARKAFRHLAYSKFH----HVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS--SSCEEEEESCHHHHHHHHHHHTTCBSS----SSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCEEC----CeEEEEEECC
Confidence 4679999999999999999999999999999988764 479999999999999999999999999 9999999876
Q ss_pred C
Q 022688 203 R 203 (293)
Q Consensus 203 ~ 203 (293)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 302
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.6e-14 Score=101.49 Aligned_cols=75 Identities=16% Similarity=0.291 Sum_probs=68.5
Q ss_pred CCcceEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 122 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
.+..+|||+|||. .+++++|+++|++||.|..+.+. .|||||+|.+.++|..|+..|+|..+. |+.|.|..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNF----GKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCB----TTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeC----CcEEEEEE
Confidence 4577999999998 99999999999999999999986 379999999999999999999999999 89999998
Q ss_pred CCCC
Q 022688 201 YDRS 204 (293)
Q Consensus 201 ~~~~ 204 (293)
+...
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 8643
No 303
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=101.03 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=67.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
+..+|||+|||..+++++|+++|++||.|..+.++.+.. .|||||+|.+.++|..|+..|||..+. |+.|++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~~~~ 79 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ----AQMAKQ 79 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC----EESCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe----eEEEee
Confidence 467999999999999999999999999999999998754 369999999999999999999999998 777766
Q ss_pred ecC
Q 022688 199 KRY 201 (293)
Q Consensus 199 ~~~ 201 (293)
...
T Consensus 80 ~~~ 82 (85)
T 1x4e_A 80 SGP 82 (85)
T ss_dssp SCC
T ss_pred cCC
Confidence 543
No 304
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=5.1e-14 Score=100.09 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=69.2
Q ss_pred CCCCcceEEEcCCCC-CCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 120 SRHSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
...+..+|||+|||. .+++++|+++|+.||.|..+.+. .|||||+|.+.++|..|+..|||..+. |+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNF----GKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEET----TEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEE
Confidence 345678999999998 99999999999999999999985 479999999999999999999999998 999999
Q ss_pred ecCCC
Q 022688 199 KRYDR 203 (293)
Q Consensus 199 ~~~~~ 203 (293)
..+..
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 98754
No 305
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=6.3e-14 Score=100.97 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=68.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~---~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
.....+|||+|||+.+++++|+++|.+||.|.. +.++.+.. .|||||+|.+.++|.+|+.. ++..+. ++.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~----gr~i 86 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG----HRYI 86 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS----SSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC----CcEE
Confidence 345689999999999999999999999999987 88877633 27999999999999999997 999998 8999
Q ss_pred EeecCCC
Q 022688 197 TVKRYDR 203 (293)
Q Consensus 197 ~v~~~~~ 203 (293)
.|..+..
T Consensus 87 ~v~~~~~ 93 (104)
T 1wg5_A 87 EIFKSSR 93 (104)
T ss_dssp EEEEECT
T ss_pred EEEECCH
Confidence 9987753
No 306
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=2.2e-14 Score=105.83 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=71.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCC---eEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCC
Q 022688 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (293)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~ 192 (293)
.+....++|||+|||+++++++|+++|+.||. |..+.++.+..+ |||||+|.+.++|.+|+. +|+..+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---- 86 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG---- 86 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET----
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC----
Confidence 34456789999999999999999999999998 889999887664 699999999999999999 9999999
Q ss_pred CceeEeecCC
Q 022688 193 RGRITVKRYD 202 (293)
Q Consensus 193 g~~i~v~~~~ 202 (293)
|+.|.|..+.
T Consensus 87 gr~i~V~~a~ 96 (118)
T 2db1_A 87 HRYIEVFKSH 96 (118)
T ss_dssp TEEEEEEEEC
T ss_pred CeEEEEEECC
Confidence 9999998875
No 307
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.53 E-value=6.6e-15 Score=111.34 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=68.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.....+|||+|||+++++++|+++|++|| |+.|.++.+..+ |||||+|++.++|.+|+ .+|+..+. ++.|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~----gR~i~ 116 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ----HRYIE 116 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS----SCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC----CEEEE
Confidence 34567999999999999999999999999 679999887653 69999999999999999 79999998 89999
Q ss_pred eecCCCC
Q 022688 198 VKRYDRS 204 (293)
Q Consensus 198 v~~~~~~ 204 (293)
|..+...
T Consensus 117 V~~a~~~ 123 (139)
T 2hgn_A 117 LFLNSTT 123 (139)
T ss_dssp CEECCCS
T ss_pred EEECCCC
Confidence 8877643
No 308
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=7.2e-14 Score=98.10 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=70.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.....+|||+|||..+++++|+++|+.| .|..+.++.+..+ |+|||+|.+.++|.+|+. ||+..+. |+.|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~----gr~i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG----GRYIE 80 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET----TEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC----CcEEE
Confidence 3456799999999999999999999999 9999999988443 699999999999999999 9999999 99999
Q ss_pred eecCCCCC
Q 022688 198 VKRYDRSP 205 (293)
Q Consensus 198 v~~~~~~~ 205 (293)
|..+...+
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99886543
No 309
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.53 E-value=5.8e-14 Score=98.09 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=69.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
..+|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.++|..|+ .||+..+. |+.|.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~----g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR----GRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET----TEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC----CcEEEEE
Confidence 46999999999999999999999999999999998753 369999999999999999 99999999 9999999
Q ss_pred cCCC
Q 022688 200 RYDR 203 (293)
Q Consensus 200 ~~~~ 203 (293)
.++.
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 8864
No 310
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3e-14 Score=103.34 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=69.4
Q ss_pred CCcceEEE--cCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccC-CCcCCCceeEe
Q 022688 122 HSEYRVIV--RGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF-RNPWARGRITV 198 (293)
Q Consensus 122 ~~~~~l~v--~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~-~~~~~g~~i~v 198 (293)
.++.+||| +||+..+++++|+++|++||.|..+.++.+ .|||||+|++.++|.+|+..|||.++ ..-..+..+.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 45679999 779999999999999999999999988754 47999999999999999999999987 31122788888
Q ss_pred ecCCCCC
Q 022688 199 KRYDRSP 205 (293)
Q Consensus 199 ~~~~~~~ 205 (293)
.++..-+
T Consensus 101 ~~a~~~p 107 (114)
T 2cq2_A 101 NFVEKVQ 107 (114)
T ss_dssp EEESCCC
T ss_pred EecccCc
Confidence 8876443
No 311
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=5.3e-15 Score=106.45 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=59.2
Q ss_pred cCCCCCCcHHHHHHHH------------HhcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEE
Q 022688 12 GNLPSDIREYEVEDLF------------YKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (293)
Q Consensus 12 ~nLp~~~t~~~l~~~F------------~~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 77 (293)
.|||..+++++|++.| ++||+|..|.|..+ +.++|||||+|.++++|.+|+..|||..|+|+.|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 4445556777776666 99999999999654 568999999999999999999999999999999999
Q ss_pred EEc
Q 022688 78 ELA 80 (293)
Q Consensus 78 ~~~ 80 (293)
.++
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 312
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.6e-14 Score=99.82 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=67.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.....+|||+|||+.+++++|+++|++||.+ .+.++.+..+ |||||+|.+.++|.+|+. +|+..+. ++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ----HRYVE 85 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS----SSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC----CcEEE
Confidence 3456799999999999999999999999954 8999888743 699999999999999994 7999998 89999
Q ss_pred eecCCC
Q 022688 198 VKRYDR 203 (293)
Q Consensus 198 v~~~~~ 203 (293)
|..+..
T Consensus 86 V~~~~~ 91 (102)
T 1wez_A 86 LFLNST 91 (102)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 987753
No 313
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.6e-14 Score=102.62 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
...++|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|..|+.. ++..+. |+.|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID----GRVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC----CEEEE
Confidence 34579999999999999999999999999999999988653 6999999999999999998 999998 99999
Q ss_pred eecCCCCCC
Q 022688 198 VKRYDRSPS 206 (293)
Q Consensus 198 v~~~~~~~~ 206 (293)
|..+.....
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 999865443
No 314
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5e-14 Score=103.30 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
...++|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|+ .||+..+. |+.|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL----GVPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC----CeEEE
Confidence 34579999999999999999999999999999999987653 69999999999999999 99999998 99999
Q ss_pred eecCC
Q 022688 198 VKRYD 202 (293)
Q Consensus 198 v~~~~ 202 (293)
|..+.
T Consensus 98 V~~a~ 102 (114)
T 2cq4_A 98 VQASQ 102 (114)
T ss_dssp EEEHH
T ss_pred EEecC
Confidence 98875
No 315
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.4e-14 Score=102.37 Aligned_cols=79 Identities=28% Similarity=0.387 Sum_probs=72.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
+..+|||+|||..+++++|+++|+.||.|..+.+..+..+ |||||+|.+.++|..|+..|||..+. |+.|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS----GRALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS----SSCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Confidence 4579999999999999999999999999999999988643 69999999999999999999999998 999999
Q ss_pred ecCCCCC
Q 022688 199 KRYDRSP 205 (293)
Q Consensus 199 ~~~~~~~ 205 (293)
..+....
T Consensus 83 ~~a~~~~ 89 (104)
T 1p1t_A 83 DNAASEK 89 (104)
T ss_dssp EETTCTT
T ss_pred EeCCCcc
Confidence 9886543
No 316
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.9e-13 Score=97.26 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=69.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
...+..+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|..|+.. +..+. |+.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~----g~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMID----GRW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEET----TEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeC----CeE
Confidence 3345679999999999999999999999999999999998653 6999999999999999994 56677 999
Q ss_pred eEeecCCCCC
Q 022688 196 ITVKRYDRSP 205 (293)
Q Consensus 196 i~v~~~~~~~ 205 (293)
|.|..+....
T Consensus 85 l~v~~a~~~~ 94 (103)
T 2cqg_A 85 CDCKLPNSKQ 94 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEEecCCCC
Confidence 9999986543
No 317
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.52 E-value=6.9e-14 Score=105.16 Aligned_cols=78 Identities=12% Similarity=0.184 Sum_probs=70.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEE--EEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCc----cCCCcC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDT----EFRNPW 191 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~--~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~----~~~~~~ 191 (293)
.+..+|||+|||..+++++|+++|++||.|.. |.++.+..+ |||||+|.+. +|.+|+..|||. .+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~--- 96 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID--- 96 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC---
Confidence 45679999999999999999999999999976 899988743 6999999999 999999999999 888
Q ss_pred CCceeEeecCCCC
Q 022688 192 ARGRITVKRYDRS 204 (293)
Q Consensus 192 ~g~~i~v~~~~~~ 204 (293)
|+.|.|..+...
T Consensus 97 -gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 -GKTINVEFAKGS 108 (131)
T ss_dssp -GCCCCCEECCCS
T ss_pred -CEEEEEEECCCC
Confidence 999999988653
No 318
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.52 E-value=6e-14 Score=108.54 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=69.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcC--CeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
...+|||+|||..+++++|+++|+.|| .|..+.++.+..+ |||||+|.+.++|..|+..|||..+. |+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~----Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN----GEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEe
Confidence 457999999999999999999999999 9999999988654 59999999999999999999999999 9999
Q ss_pred EeecCC
Q 022688 197 TVKRYD 202 (293)
Q Consensus 197 ~v~~~~ 202 (293)
.|..+.
T Consensus 130 ~V~~a~ 135 (156)
T 3n9u_C 130 DVRPAT 135 (156)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999875
No 319
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.3e-14 Score=105.86 Aligned_cols=78 Identities=21% Similarity=0.208 Sum_probs=66.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeC-CC---CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-SE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~---~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
+.....+|||+|||..+++++|.++|..||.|..+.++.+ .. .|||||+|.+.++|.+|+. ||+..+. |+.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~----gr~ 95 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG----NRF 95 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST----TSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC----CcE
Confidence 3445689999999999999999999999999877444333 22 2699999999999999999 9999999 999
Q ss_pred eEeecCC
Q 022688 196 ITVKRYD 202 (293)
Q Consensus 196 i~v~~~~ 202 (293)
|.|..+.
T Consensus 96 i~V~~a~ 102 (124)
T 1wel_A 96 IQVHPIT 102 (124)
T ss_dssp BEEEEEC
T ss_pred EEEEECC
Confidence 9998875
No 320
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.52 E-value=9e-14 Score=96.73 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|..|+. +++..+. |+.|.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i~ 83 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD----GRVID 83 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC----CEEEE
Confidence 45679999999999999999999999999999999988653 699999999999999996 5777888 99998
Q ss_pred eecC
Q 022688 198 VKRY 201 (293)
Q Consensus 198 v~~~ 201 (293)
|+.+
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8764
No 321
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.52 E-value=6.6e-14 Score=104.21 Aligned_cols=77 Identities=21% Similarity=0.329 Sum_probs=70.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
...+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|..|+ .|+|..+. |+.|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR----GRTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC----CeEEEE
Confidence 4579999999999999999999999999999999887533 69999999999999999 89999999 999999
Q ss_pred ecCCCC
Q 022688 199 KRYDRS 204 (293)
Q Consensus 199 ~~~~~~ 204 (293)
..++..
T Consensus 110 ~~a~~~ 115 (124)
T 2jwn_A 110 LPKRTN 115 (124)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998643
No 322
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.51 E-value=4.5e-13 Score=99.68 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=72.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
...+.++|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.++|..|+..|+|..+. |+.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS----SCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC----CcEE
Confidence 345678999999999999999999999999999999998763 379999999999999999999999998 9999
Q ss_pred EeecCCC
Q 022688 197 TVKRYDR 203 (293)
Q Consensus 197 ~v~~~~~ 203 (293)
.|..+..
T Consensus 107 ~V~~a~~ 113 (124)
T 2kt5_A 107 DIQLVAS 113 (124)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9998764
No 323
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.6e-13 Score=96.39 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=68.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
.+..+|||+|+ .+++++|+++|++||.|..+.+.. ..|||||+|.+.++|.+|+..|++..+. |+.|.|..+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEET----TEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEEC
Confidence 45679999996 899999999999999999999853 4489999999999999999999999998 999999998
Q ss_pred CCCCC
Q 022688 202 DRSPS 206 (293)
Q Consensus 202 ~~~~~ 206 (293)
...+.
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 65444
No 324
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=6.1e-14 Score=100.50 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
...++|||+|||..+++++|+++|+.||.|..+.+... .|||||+|.+.++|..|+..|||..+. |+.|.|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE--KGCCFIKYDTHEQAAVCIVALANFPFQ----GRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHTTCEET----TEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEec
Confidence 34679999999999999999999999999999999843 489999999999999999999999999 999999887
Q ss_pred C
Q 022688 202 D 202 (293)
Q Consensus 202 ~ 202 (293)
+
T Consensus 99 ~ 99 (101)
T 2la4_A 99 K 99 (101)
T ss_dssp C
T ss_pred c
Confidence 5
No 325
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.6e-14 Score=98.39 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=67.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCC-eEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC-ccCCCcCCCceeEeec
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD-TEFRNPWARGRITVKR 200 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g-~~~~~~~~g~~i~v~~ 200 (293)
+..+|||+|||..+++++|+++|++||. |..+.+.. .|||||+|.+.++|..|+..||| ..+. |+.|.|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~----g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK---SGYAFVDYPDQNWAIRAIETLSGKVELH----GKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE---TTEEEECCSCHHHHHHHHHHHTTTCEET----TEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC---CCEEEEEECCHHHHHHHHHHccCCeeEC----CEEEEEEE
Confidence 4579999999999999999999999999 65555532 37999999999999999999999 8988 99999999
Q ss_pred CCCCCCC
Q 022688 201 YDRSPSR 207 (293)
Q Consensus 201 ~~~~~~r 207 (293)
+.....+
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 8755443
No 326
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.6e-14 Score=101.82 Aligned_cols=75 Identities=24% Similarity=0.317 Sum_probs=67.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
....+|||+|||+++++++|+++|+.| .|..|.++.+..+ |||||+|.+.++|.+|+ .+|+..+. |+.|.|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~----gr~i~V 87 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI----QRYVEV 87 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET----TEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC----CeEEEE
Confidence 345799999999999999999999999 8999999887653 79999999999999999 69999999 999999
Q ss_pred ecCC
Q 022688 199 KRYD 202 (293)
Q Consensus 199 ~~~~ 202 (293)
..+.
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 8775
No 327
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=5.2e-13 Score=98.62 Aligned_cols=76 Identities=8% Similarity=0.035 Sum_probs=66.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcE-EEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCC
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY-GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~-~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (293)
..|||+||++.+++++|+++|++||.|..+.+... .|| |||+|.+.++|..|+..|||..+.+ ..+.|+|.+++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g--~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYA--GCCTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBT--TBSEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecC--CCeEEEEEEecC
Confidence 35679999999999999999999999999998764 375 9999999999999999999999981 026899998864
Q ss_pred C
Q 022688 204 S 204 (293)
Q Consensus 204 ~ 204 (293)
.
T Consensus 102 ~ 102 (124)
T 2e5i_A 102 T 102 (124)
T ss_dssp S
T ss_pred C
Confidence 3
No 328
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=4e-14 Score=97.16 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=61.9
Q ss_pred ceEEEcCCCCCC------CHHHHHHHHhhcCCeEEEEEeeCC--CCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCc-e
Q 022688 125 YRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG-R 195 (293)
Q Consensus 125 ~~l~v~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~--~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~-~ 195 (293)
++|||+|||..+ ++++|+++|++||.|..+.++... ..|||||+|.+.++|..|+..|||..+. |+ .
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~----g~~~ 77 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----KQHT 77 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS----SSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC----Ccee
Confidence 589999999999 679999999999999999988432 2379999999999999999999999998 77 6
Q ss_pred eEe
Q 022688 196 ITV 198 (293)
Q Consensus 196 i~v 198 (293)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 655
No 329
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=95.10 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=63.9
Q ss_pred cce-EEEcCCCCCCCHHH----HHHHHhhcC-CeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 124 EYR-VIVRGLPSSASWQD----LKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 124 ~~~-l~v~nl~~~~~~~~----l~~~f~~~G-~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
..+ |||.|||..+++++ |.++|++|| +|..| .+|+|||.|.+.++|..|++.|+|..+. |+.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~----gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVF----GNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSS----SSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccC----CceEE
Confidence 445 99999999999987 568999994 99888 2389999999999999999999999999 99999
Q ss_pred eecCCCCC
Q 022688 198 VKRYDRSP 205 (293)
Q Consensus 198 v~~~~~~~ 205 (293)
|.+++..+
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99997544
No 330
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.50 E-value=2.4e-14 Score=101.38 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=68.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
+..+|||+|||..+++++|+++|.+||.|..+.++.+..+ |||||+|.+.++|.+|+..||+..+. |+.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~l~v 89 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKVKL 89 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEE
Confidence 4579999999999999999999999999987777776544 69999999999999999999999999 999999
Q ss_pred ecCC
Q 022688 199 KRYD 202 (293)
Q Consensus 199 ~~~~ 202 (293)
..+.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 8764
No 331
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.50 E-value=4.7e-14 Score=95.29 Aligned_cols=71 Identities=18% Similarity=0.285 Sum_probs=64.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
+|||+|||..+++++|+++|++||.|..+.++.++.+ |||||+|.+.++|..|+. |++..+. |+.|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~----g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN----NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS----SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC----CEEEEEEeC
Confidence 4899999999999999999999999999999887643 699999999999999998 9999998 899888764
No 332
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=99.79 Aligned_cols=76 Identities=13% Similarity=0.256 Sum_probs=68.0
Q ss_pred CcceEEEcCCCCCC------CHHHHHHHHhhcCCeEEEEEeeCC--CCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCc
Q 022688 123 SEYRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (293)
Q Consensus 123 ~~~~l~v~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~--~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~ 194 (293)
..++|||+|||..+ ++++|+++|++||.|..+.++... ..|||||+|.+.++|..|+..|||..+. |+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----KQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS----TT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC----CC
Confidence 45799999999999 789999999999999999988432 2379999999999999999999999999 88
Q ss_pred -eeEeecCC
Q 022688 195 -RITVKRYD 202 (293)
Q Consensus 195 -~i~v~~~~ 202 (293)
.|.|..+.
T Consensus 90 ~~l~V~~a~ 98 (105)
T 2nlw_A 90 HTFRVNLFT 98 (105)
T ss_dssp CEEEEECSC
T ss_pred ceEEEEEcc
Confidence 99998875
No 333
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=100.88 Aligned_cols=78 Identities=17% Similarity=0.403 Sum_probs=67.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC-----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCc
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~ 194 (293)
.....++|||+|||..+++++|+++|+.|| |..+.+..+.. .|||||+|.+.++|..|+ .|+|..+. |+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~----g~ 88 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----NR 88 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT----TB
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC----Ce
Confidence 345678999999999999999999999999 99999988762 379999999999999999 89999999 99
Q ss_pred eeEeecCCC
Q 022688 195 RITVKRYDR 203 (293)
Q Consensus 195 ~i~v~~~~~ 203 (293)
.|.|..+..
T Consensus 89 ~l~V~~a~~ 97 (100)
T 2j76_E 89 RIRVDVADQ 97 (100)
T ss_dssp CCCCEECCC
T ss_pred EEEEEeccC
Confidence 999988764
No 334
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.49 E-value=1.4e-13 Score=100.00 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=69.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+.++|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..++ ..+. |+.|.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~----g~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD----SKTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCC----CEEEE
Confidence 45679999999999999999999999999999999987643 699999999999999999874 7777 99999
Q ss_pred eecCCCCCC
Q 022688 198 VKRYDRSPS 206 (293)
Q Consensus 198 v~~~~~~~~ 206 (293)
|..+...+.
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 998875443
No 335
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.6e-13 Score=97.81 Aligned_cols=79 Identities=18% Similarity=0.289 Sum_probs=69.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCC-eEEEEEe-eCCC----CcEEEEEeCChhhHHHHHHhcC--CccCCCcCCCc
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVS-RDSE----GTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARG 194 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~----~g~~fv~f~~~~~A~~a~~~l~--g~~~~~~~~g~ 194 (293)
+.++|||+|||..+++++|+++|..||. |..+.++ .+.. .|||||+|.+.++|..|+..|+ +..+. |+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~----g~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW----GH 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT----TB
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec----CC
Confidence 4679999999999999999999999998 9999988 4443 3799999999999999999996 58888 89
Q ss_pred eeEeecCCCCC
Q 022688 195 RITVKRYDRSP 205 (293)
Q Consensus 195 ~i~v~~~~~~~ 205 (293)
.|.|.++....
T Consensus 83 ~l~V~~a~~~~ 93 (109)
T 2dis_A 83 QIAVDWAEPEI 93 (109)
T ss_dssp CCEEEESCSSC
T ss_pred eEEEEEcCCCC
Confidence 99999987544
No 336
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.9e-13 Score=95.57 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=64.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCc-EEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT-YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g-~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
...+|||+|||..+++++|+++|.+||.|..| +.+..++ ||||+|.+.++|..|+. |++..+. |+.|.|..+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~----g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG----GHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEET----TEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC----CEEEEEEEC
Confidence 34699999999999999999999999999987 3333333 99999999999999999 9999999 999999877
Q ss_pred CC
Q 022688 202 DR 203 (293)
Q Consensus 202 ~~ 203 (293)
..
T Consensus 80 ~~ 81 (94)
T 2e5g_A 80 EQ 81 (94)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 337
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.49 E-value=1.3e-13 Score=100.53 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCC--CCC--------cHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCc
Q 022688 4 RFSRTIYVGNLP--SDI--------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (293)
Q Consensus 4 ~~~~~l~V~nLp--~~~--------t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~ 73 (293)
-++++|.|.|+= .+. .+++|++.|++||.|.+|.|..+ .++|+|||+|.+.++|.+|++.|||..|+|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 478999999993 221 34578999999999999998654 3589999999999999999999999999999
Q ss_pred eEEEEEcC
Q 022688 74 RLRVELAH 81 (293)
Q Consensus 74 ~l~v~~~~ 81 (293)
.|.|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999985
No 338
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=1.2e-13 Score=116.30 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec--CCCCCcEEEEEECCHHHHHHHHHhhC-CCccC---CceEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRD-GYNFD---GCRLRV 77 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~-g~~i~---g~~l~v 77 (293)
.++++|||+|||+.+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|| +..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999954 46778999999999999999999995 44544 999999
Q ss_pred EEcCCC
Q 022688 78 ELAHGG 83 (293)
Q Consensus 78 ~~~~~~ 83 (293)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998865
No 339
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=7.9e-14 Score=94.63 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=65.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
++|||+|||..+++++|+++|++||.|..+.+..++.+ |+|||+|.+.++|..|+..++ ..+. |+.|.|..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~----g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD----SKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS----SCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC----CEEEEEEe
Confidence 37999999999999999999999999999999887643 699999999999999999999 8888 88888876
Q ss_pred C
Q 022688 201 Y 201 (293)
Q Consensus 201 ~ 201 (293)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 4
No 340
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.4e-14 Score=102.08 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=69.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCe-EEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDV-CFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+..+|||+|||..+++++|+++|+.||.| ..+.++.+..+ |||||+|.+.++|.+|+.. |+..+. |+.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~----gr~i~ 87 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN----GREAF 87 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET----TEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC----CeEEE
Confidence 456799999999999999999999999999 88888887632 7999999999999999997 999998 99999
Q ss_pred eecCCC
Q 022688 198 VKRYDR 203 (293)
Q Consensus 198 v~~~~~ 203 (293)
|..+..
T Consensus 88 v~~a~~ 93 (114)
T 2cpy_A 88 VHVVTL 93 (114)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998763
No 341
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=6e-14 Score=99.70 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=70.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhhcCCeEEEEEeeC-CCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 121 RHSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~-~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
..+..+|||+|||..+++++|+ ++|++||.|..+.+... ...|||||+|.+.++|..|+..|||..+. |+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY----DKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC----CcE
Confidence 3466799999999999999999 99999999999988742 12379999999999999999999999998 999
Q ss_pred eEeecCCCCC
Q 022688 196 ITVKRYDRSP 205 (293)
Q Consensus 196 i~v~~~~~~~ 205 (293)
|.|.++...+
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999886543
No 342
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.9e-13 Score=97.12 Aligned_cols=79 Identities=23% Similarity=0.369 Sum_probs=67.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
..+..+|||+|||..+++++|+++|+.|+ .+.++.+..+ |||||+|.+.++|.+|+..||+..+. |+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 84 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID----GNKV 84 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC----CeEE
Confidence 34668999999999999999999999875 4555555433 69999999999999999999999999 9999
Q ss_pred EeecCCCCCC
Q 022688 197 TVKRYDRSPS 206 (293)
Q Consensus 197 ~v~~~~~~~~ 206 (293)
.|..+.....
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2fc8_A 85 TLDWAKPKGE 94 (102)
T ss_dssp EEEECCCCCS
T ss_pred EEEEecCCCC
Confidence 9999875444
No 343
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=8.3e-14 Score=100.90 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=69.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCC---eEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCc
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~ 194 (293)
....++|||+|||+.+++++|+++|..||. |..+.++.+..+ |||||+|.+.++|.+|+. +++..+. |+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG----QR 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS----SS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC----Ce
Confidence 345679999999999999999999999988 889999887653 699999999999999999 9999998 89
Q ss_pred eeEeecCC
Q 022688 195 RITVKRYD 202 (293)
Q Consensus 195 ~i~v~~~~ 202 (293)
.|.|..+.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 99988775
No 344
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=5.9e-14 Score=100.55 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=66.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeC----CCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD----SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~----~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
.+..+|||+|||..+++++|+++|..||.|.. .++.+ ...|||||+|.+.++|.+|++ ||+..+. |+.|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~----g~~l~ 88 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF----GNEIK 88 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT----TBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC----CcEEE
Confidence 35679999999999999999999999998765 33332 334799999999999999999 9999999 99999
Q ss_pred eecCCCCC
Q 022688 198 VKRYDRSP 205 (293)
Q Consensus 198 v~~~~~~~ 205 (293)
|..+....
T Consensus 89 V~~a~~~~ 96 (101)
T 1fj7_A 89 LEKPKGRD 96 (101)
T ss_dssp EECCSCCC
T ss_pred EEEcCCCC
Confidence 99986543
No 345
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=2e-13 Score=101.34 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=67.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcE-EEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY-GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~-~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
-..|||+||++.+++++|.++|++||.|..|.+.... .|+ |||+|.+.++|..|++.|||..+.+ ..+.|+|.+++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g--~~~~LrI~~ak 104 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLRIDFSK 104 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEET--TEEEEEEEECS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecC--CCcEEEEEecC
Confidence 3477899999999999999999999999999888755 356 9999999999999999999999981 12889999886
Q ss_pred CC
Q 022688 203 RS 204 (293)
Q Consensus 203 ~~ 204 (293)
..
T Consensus 105 ~~ 106 (130)
T 3zzy_A 105 LT 106 (130)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 346
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=98.22 Aligned_cols=78 Identities=8% Similarity=0.170 Sum_probs=67.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
..+..+|||+|||..+++++|+++|+.||.|..+ .......|||||+|.+.++|..|+..|+|..+. |+.|.|..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEE
Confidence 3456899999999999999999999999988777 222223379999999999999999999999998 99999998
Q ss_pred CCC
Q 022688 201 YDR 203 (293)
Q Consensus 201 ~~~ 203 (293)
+..
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 854
No 347
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.45 E-value=6.3e-14 Score=98.19 Aligned_cols=75 Identities=27% Similarity=0.358 Sum_probs=67.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeec
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (293)
++|||+|||..+++++|+++|++||.|..+.+..+.. .|||||+|.+.+ |..|+..|||..+. |+.|.|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~----g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM----GRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS----SSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC----CeEEEEEE
Confidence 4799999999999999999999999999999998754 369999999999 99999999999999 99999998
Q ss_pred CCCC
Q 022688 201 YDRS 204 (293)
Q Consensus 201 ~~~~ 204 (293)
+...
T Consensus 77 a~~~ 80 (90)
T 2ki2_A 77 ANPK 80 (90)
T ss_dssp C---
T ss_pred cCCC
Confidence 8643
No 348
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.45 E-value=2.1e-13 Score=101.19 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=65.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeE--EEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCce
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--FAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~--~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~ 195 (293)
.....+|||+|||+++++++|+++|+.| .|. .|.++.+..+ |||||+|.+.++|.+|+.. ++..+. |+.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~----gR~ 112 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIG----HRY 112 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBT----TBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEEC----CEE
Confidence 3456789999999999999999999999 676 8998887653 7999999999999999985 778888 888
Q ss_pred eEeecCC
Q 022688 196 ITVKRYD 202 (293)
Q Consensus 196 i~v~~~~ 202 (293)
|.|..+.
T Consensus 113 I~V~~a~ 119 (126)
T 2hgm_A 113 IEVFKSS 119 (126)
T ss_dssp CCCEEEC
T ss_pred EEEEECC
Confidence 8887653
No 349
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.45 E-value=2.4e-13 Score=111.90 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=69.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcC--CeEEEEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCCcCCCcee
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i 196 (293)
..++|||+||+..+++++|+++|++|| .|..|.|+.+..+ |||||+|.+.++|.+||..||+..|. |+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~----Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT----TBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC----CEEe
Confidence 456899999999999999999999999 9999999998654 59999999999999999999999999 9999
Q ss_pred EeecCC
Q 022688 197 TVKRYD 202 (293)
Q Consensus 197 ~v~~~~ 202 (293)
.|..+.
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999875
No 350
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=4.5e-14 Score=104.52 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=67.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCe----EEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCC
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV----CFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g 193 (293)
.....+|||+|||+++++++|+++|++||.| ..|.++.+..+ |||||+|.+.++|.+|+.. |+..+. +
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~----g 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG----K 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS----S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC----C
Confidence 3456899999999999999999999999975 67888877543 6999999999999999996 999988 8
Q ss_pred ceeEeecCC
Q 022688 194 GRITVKRYD 202 (293)
Q Consensus 194 ~~i~v~~~~ 202 (293)
+.|.|..+.
T Consensus 95 R~i~V~~a~ 103 (123)
T 2dha_A 95 RYIELFRST 103 (123)
T ss_dssp CEECCEEEC
T ss_pred eEEEEEECC
Confidence 899887764
No 351
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.44 E-value=3.6e-13 Score=93.59 Aligned_cols=70 Identities=16% Similarity=0.379 Sum_probs=64.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhc----C-------CeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKA----G-------DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~ 191 (293)
+..+|||+|||..+++++|+++|++| | .|..+.+..+ .|||||+|.+.++|..|+ .|||..+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~--- 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQ--- 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEET---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEEC---
Confidence 56799999999999999999999999 8 8999998876 489999999999999999 99999998
Q ss_pred CCceeEee
Q 022688 192 ARGRITVK 199 (293)
Q Consensus 192 ~g~~i~v~ 199 (293)
|+.|.|.
T Consensus 79 -g~~l~V~ 85 (87)
T 2hzc_A 79 -GQSLKIR 85 (87)
T ss_dssp -TEECEEE
T ss_pred -CeEEEEe
Confidence 8888876
No 352
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.44 E-value=4.7e-13 Score=105.72 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=71.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
..+.++|||+|||..+++++|+++|++||.|..|.+..+.. .|||||+|.+.++|..|+..|++..+. |+.|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~----Gr~l~ 160 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPMD 160 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS----SSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEE
Confidence 34568999999999999999999999999999999998763 279999999999999999999999998 89999
Q ss_pred eecCC
Q 022688 198 VKRYD 202 (293)
Q Consensus 198 v~~~~ 202 (293)
|..+.
T Consensus 161 V~~a~ 165 (177)
T 2f3j_A 161 IQLVA 165 (177)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 98875
No 353
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.43 E-value=1.8e-13 Score=95.37 Aligned_cols=75 Identities=20% Similarity=0.334 Sum_probs=68.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
...+|||+|||..+++++|+++|++| .|..+.+. ...|||||+|.+.++|..|+..|||..+. |+.|.|..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFR----GKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEET----TEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEEEEcC
Confidence 34699999999999999999999999 99999885 44489999999999999999999999999 9999999886
Q ss_pred CC
Q 022688 203 RS 204 (293)
Q Consensus 203 ~~ 204 (293)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 354
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.43 E-value=2.1e-13 Score=92.04 Aligned_cols=71 Identities=15% Similarity=0.284 Sum_probs=63.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC----CcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
+|||+|||..+++++|+++|++||.|..+.++.+.. .|||||+|.+.++|..|+.. ++..+. |+.|.|+.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG----LSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT----TBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC----CEEEEEEEC
Confidence 589999999999999999999999999999988754 37999999999999999995 888888 888877653
No 355
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.42 E-value=4.5e-13 Score=102.27 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=68.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEE--------EEEee-CCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSR-DSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~-~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~ 192 (293)
.+..+|||+|||..+++++|.++|+.||.|.. +.+.. ....|||||+|.+.++|..|+..|||..+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~---- 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF---- 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC----
Confidence 45679999999999999999999999998765 33333 333479999999999999999999999999
Q ss_pred CceeEeecCCCCCC
Q 022688 193 RGRITVKRYDRSPS 206 (293)
Q Consensus 193 g~~i~v~~~~~~~~ 206 (293)
|+.|.|..+.....
T Consensus 119 g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 GKPMVVQFARSARP 132 (143)
T ss_dssp TEECEEEECCCSCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999865443
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.42 E-value=7.5e-13 Score=97.91 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=68.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
.+..+|||+|+ .+++++|+++|++||.|..+.+.. ..|||||+|.+.++|..|+..|+|..+. |+.|.|..+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~~----g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBCS----SCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEEe
Confidence 45689999996 699999999999999999999873 4489999999999999999999999998 999999998
Q ss_pred CCCCC
Q 022688 202 DRSPS 206 (293)
Q Consensus 202 ~~~~~ 206 (293)
...+.
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 75443
No 357
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=8.9e-13 Score=92.03 Aligned_cols=77 Identities=10% Similarity=0.167 Sum_probs=61.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
...+..+|||+|||.++++++|+++|++||.|..+.++.+ ..|||||+|++.++|.+ +++..+. ..|+.|.+.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~--~~g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLI--IKGISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEE--ETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcc--cCCEEEEEE
Confidence 3456789999999999999999999999999999999886 45899999999999883 5555433 237888888
Q ss_pred cCCC
Q 022688 200 RYDR 203 (293)
Q Consensus 200 ~~~~ 203 (293)
.+..
T Consensus 80 ~a~~ 83 (89)
T 3d2w_A 80 NAEP 83 (89)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 8754
No 358
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.10 E-value=2.8e-14 Score=104.99 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=72.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEE--------EEEeeCCCC----cEEEEEeCChhhHHHHHHhcCCccCCC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~----g~~fv~f~~~~~A~~a~~~l~g~~~~~ 189 (293)
.+..+|||+|||..+++++|+++|++||.|.. +.++.+..+ |||||+|.+.++|..|+..||+..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS- 83 (116)
Confidence 35679999999999999999999999999988 888877442 69999999999999999999999999
Q ss_pred cCCCceeEeecCCCCCCC
Q 022688 190 PWARGRITVKRYDRSPSR 207 (293)
Q Consensus 190 ~~~g~~i~v~~~~~~~~r 207 (293)
|+.|.|..+...+.+
T Consensus 84 ---g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 ---GNPIKVSFATRRADF 98 (116)
Confidence 999999998755443
No 359
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.38 E-value=8e-13 Score=94.75 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=66.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEe
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v 198 (293)
...++|||+|||..+++++|.++|+.||.|..+.++.+..+ |||||+|.+.++|..|+. ++..+. |..|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~----g~~l~v 80 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH----GKKLKL 80 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET----TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC----CEEEEE
Confidence 35679999999999999999999999999999999998733 699999999999999999 777777 788877
Q ss_pred ecCC
Q 022688 199 KRYD 202 (293)
Q Consensus 199 ~~~~ 202 (293)
..+.
T Consensus 81 ~~a~ 84 (102)
T 2xs2_A 81 GPAI 84 (102)
T ss_dssp EEEE
T ss_pred EECC
Confidence 7664
No 360
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=9.8e-13 Score=91.64 Aligned_cols=76 Identities=11% Similarity=0.147 Sum_probs=62.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
+.++|||+|||..+++++|+++|++||.|..+.++.+ ..|||||+|.+.++|++ +++..+. ..+..|.+..+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~--~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLI--IKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEE--ETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCce--eCCEEEEEEecC
Confidence 4579999999999999999999999999999999876 45799999999999975 3444432 228888888876
Q ss_pred CCC
Q 022688 203 RSP 205 (293)
Q Consensus 203 ~~~ 205 (293)
...
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.35 E-value=9.4e-12 Score=99.67 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=66.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC---cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
..++|||+|||..+++++|+++|++||.|..+.+..+..+ |||||+|++.++|..|+..++ ..+. |+.|.|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~----Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYK----ETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEET----TEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeEC----CEEEEEE
Confidence 3579999999999999999999999999999999987654 799999999999999998665 4777 8999988
Q ss_pred cCC
Q 022688 200 RYD 202 (293)
Q Consensus 200 ~~~ 202 (293)
...
T Consensus 183 ~~~ 185 (193)
T 2voo_A 183 FKD 185 (193)
T ss_dssp ETT
T ss_pred EhH
Confidence 764
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.35 E-value=1.9e-12 Score=106.31 Aligned_cols=83 Identities=12% Similarity=0.217 Sum_probs=69.9
Q ss_pred CCcceEEEcCCCCCC---------CHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCC----
Q 022688 122 HSEYRVIVRGLPSSA---------SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR---- 188 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~---------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~---- 188 (293)
....+|||+||+..+ ++++|+++|++||.|..|.++..+ |||||+|.+.++|+.|+..|+|..+.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k--G~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK--NCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC--CEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 456799999999998 799999999999999999998764 89999999999999999999999991
Q ss_pred ----CcCCCceeEeecCCCCCC
Q 022688 189 ----NPWARGRITVKRYDRSPS 206 (293)
Q Consensus 189 ----~~~~g~~i~v~~~~~~~~ 206 (293)
+...|+.|.|.++...+.
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTGGGGGGSCCCEEEECC----
T ss_pred ccccccCCCCEEEEEEccCCCC
Confidence 011389999999975543
No 363
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.34 E-value=2.9e-12 Score=93.52 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=66.9
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhhcCCeEEEEEeeCCCC----cEEEEEeCC----hhh----HHHHHH--hcCCcc
Q 022688 125 YRVIVRGL----PSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTN----PED----MKYAIR--KLDDTE 186 (293)
Q Consensus 125 ~~l~v~nl----~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~----g~~fv~f~~----~~~----A~~a~~--~l~g~~ 186 (293)
..|||+|| |+.+++++|+++|+.||+|..+.++.|+.+ |||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 48999999 999999999999999999999999999988 599999996 444 788988 789999
Q ss_pred CCCcCCCceeEeecCCC
Q 022688 187 FRNPWARGRITVKRYDR 203 (293)
Q Consensus 187 ~~~~~~g~~i~v~~~~~ 203 (293)
+. |+.|+|...+.
T Consensus 83 I~----Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IM----GFKFEVILNKH 95 (136)
T ss_dssp ET----TEEEEEEECCT
T ss_pred ec----CcEEEEEECcc
Confidence 99 99999988753
No 364
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=5.8e-12 Score=91.88 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=67.4
Q ss_pred CCCCeEEEcCCCCC-CcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECC-HHHHHHHHHhhC--CCccCCceEEEEE
Q 022688 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN-ARDAEDAIRGRD--GYNFDGCRLRVEL 79 (293)
Q Consensus 4 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~-~~~A~~A~~~l~--g~~i~g~~l~v~~ 79 (293)
.+.+.|||+||+.+ ++.++|+++|++||+|.+|.+..+. ..|||.|.+ +++|..|+..|| +..|.|..++++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~---~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA---KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC---SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 47899999999999 9999999999999999999997653 379999999 899999999994 7899999999987
Q ss_pred cC
Q 022688 80 AH 81 (293)
Q Consensus 80 ~~ 81 (293)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 365
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2e-11 Score=88.96 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCCCCC-----------HHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCc
Q 022688 122 HSEYRVIVRGLPSSAS-----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~-----------~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~ 190 (293)
.+..+|+|.||..... +++|+++|++||.|..+.+......|||||+|.+.++|..|+..|||..+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG-- 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET--
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence 4577999999954332 579999999999999997754444589999999999999999999999998
Q ss_pred CCCceeEeecCCCC
Q 022688 191 WARGRITVKRYDRS 204 (293)
Q Consensus 191 ~~g~~i~v~~~~~~ 204 (293)
|+.|.|..+...
T Consensus 91 --gr~l~v~~a~~~ 102 (112)
T 2dit_A 91 --GRQITAQAWDGT 102 (112)
T ss_dssp --TEECEEEECCSC
T ss_pred --CcEEEEEEeCCC
Confidence 999999998643
No 366
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.32 E-value=9.7e-12 Score=89.36 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCC-----CCCHHHHHHHHhhcCCeEEEEEeeCCC-----CcEEEEEeCChhhHHHHHHhcCCccCCCcC
Q 022688 122 HSEYRVIVRGLPS-----SASWQDLKDHMRKAGDVCFAEVSRDSE-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (293)
Q Consensus 122 ~~~~~l~v~nl~~-----~~~~~~l~~~f~~~G~i~~~~~~~~~~-----~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~ 191 (293)
.++.+|+|.|+.. +.++++|+++|++||.|..+.++.++. .|+|||+|.+.++|.+|+..|||..+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~--- 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG--- 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC---
Confidence 4567999999963 237899999999999999999998642 379999999999999999999999999
Q ss_pred CCceeEeecCC
Q 022688 192 ARGRITVKRYD 202 (293)
Q Consensus 192 ~g~~i~v~~~~ 202 (293)
|+.|.+..+.
T Consensus 83 -Gr~i~v~~a~ 92 (105)
T 2pe8_A 83 -GRVVKACFYN 92 (105)
T ss_dssp -TEECEEEECC
T ss_pred -CcEEEEEEcC
Confidence 9999998875
No 367
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-11 Score=90.27 Aligned_cols=64 Identities=17% Similarity=0.358 Sum_probs=55.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCC-------CcEEEEEeCChhhHHHHHHhc---CCccC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKL---DDTEF 187 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-------~g~~fv~f~~~~~A~~a~~~l---~g~~~ 187 (293)
..++|||+|||..+++++|+++|++||.|. +.++.+.. .|||||+|.+.++|.+|++.| +|..+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 457999999999999999999999999999 77766532 379999999999999999988 55533
No 368
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=2.9e-11 Score=82.64 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=62.1
Q ss_pred CCCCeEEEcCCC----CCCcH----HHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceE
Q 022688 4 RFSRTIYVGNLP----SDIRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (293)
Q Consensus 4 ~~~~~l~V~nLp----~~~t~----~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l 75 (293)
=|.-||+|.-++ .+.-+ .+|.+.|++||+|..+++..+ .+||+|.+.++|.+|++ |||..++|+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----KMWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----SEEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----CEEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 356688887666 23333 578999999999999999854 49999999999999999 99999999999
Q ss_pred EEEEcCCC
Q 022688 76 RVELAHGG 83 (293)
Q Consensus 76 ~v~~~~~~ 83 (293)
+|+++.+.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998754
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.21 E-value=3.1e-11 Score=86.75 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=65.2
Q ss_pred CcceEEEcCC--CCCCC--------HHHHHHHHhhcCCeEEEEEeeCCC------CcEEEEEeCChhhHHHHHHhcCCcc
Q 022688 123 SEYRVIVRGL--PSSAS--------WQDLKDHMRKAGDVCFAEVSRDSE------GTYGVVDYTNPEDMKYAIRKLDDTE 186 (293)
Q Consensus 123 ~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~------~g~~fv~f~~~~~A~~a~~~l~g~~ 186 (293)
++..|.+.|+ |..+. +++|+++|++||.|..+.++.+.. .|++||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678999997 33333 368999999999999999988753 3799999999999999999999999
Q ss_pred CCCcCCCceeEeecCC
Q 022688 187 FRNPWARGRITVKRYD 202 (293)
Q Consensus 187 ~~~~~~g~~i~v~~~~ 202 (293)
+. |+.|.+....
T Consensus 84 f~----GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FA----NRVVVTKYCD 95 (105)
T ss_dssp ET----TEECEEEEEC
T ss_pred eC----CCEEEEEEeC
Confidence 99 9999998764
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.15 E-value=8.3e-11 Score=86.16 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=65.8
Q ss_pred CcceEEEcCCC--CCC---CHHHHHHHHhhcCCeEEEEEeeCCCC--------cEEEEEeCChhhHHHHHHhcCCccCCC
Q 022688 123 SEYRVIVRGLP--SSA---SWQDLKDHMRKAGDVCFAEVSRDSEG--------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (293)
Q Consensus 123 ~~~~l~v~nl~--~~~---~~~~l~~~f~~~G~i~~~~~~~~~~~--------g~~fv~f~~~~~A~~a~~~l~g~~~~~ 189 (293)
++.+|++.|+- .++ -+++|++.|++||.|..+.++.+..+ |++||+|.+.++|.+|+..|||..+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 67799999983 222 36899999999999999999987542 79999999999999999999999999
Q ss_pred cCCCceeEeecCC
Q 022688 190 PWARGRITVKRYD 202 (293)
Q Consensus 190 ~~~g~~i~v~~~~ 202 (293)
|+.|.+.+..
T Consensus 98 ---GR~i~v~~~~ 107 (118)
T 3ue2_A 98 ---GRKVVAEVYD 107 (118)
T ss_dssp ---TEECEEEEEC
T ss_pred ---CcEEEEEEcC
Confidence 9999998764
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.15 E-value=1.2e-10 Score=84.80 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=65.7
Q ss_pred CCcceEEEcCCCC--CC--------CHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcC
Q 022688 122 HSEYRVIVRGLPS--SA--------SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (293)
Q Consensus 122 ~~~~~l~v~nl~~--~~--------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~ 191 (293)
.++.+|.+.|+=. +. -+++|++.|++||.|..+.+..+...|++||+|.+.++|.+|+..|||..+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~--- 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA--- 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET---
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 4567899998732 21 1347899999999999999988776799999999999999999999999999
Q ss_pred CCceeEeecCC
Q 022688 192 ARGRITVKRYD 202 (293)
Q Consensus 192 ~g~~i~v~~~~ 202 (293)
|+.|.+.+..
T Consensus 82 -GR~i~v~~~~ 91 (114)
T 3s6e_A 82 -GKMITAAYVP 91 (114)
T ss_dssp -TEECEEEEEC
T ss_pred -CEEEEEEEEc
Confidence 9999998865
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.12 E-value=1.1e-10 Score=100.87 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=65.4
Q ss_pred CCCCCcceEEEcC--CCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCc--
Q 022688 119 ISRHSEYRVIVRG--LPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG-- 194 (293)
Q Consensus 119 ~~~~~~~~l~v~n--l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~-- 194 (293)
....++.+|||+| |+..+++++|+++|++||+|..+.+.. ..|||||+|.+.++|.+|++.|||.++.. ..|+
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~-~~g~~~ 89 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVD-DLGQKI 89 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEEC-TTSCEE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCcccc-ccCCce
Confidence 3455778999999 578999999999999999999987765 34899999999999999999999998841 1133
Q ss_pred eeEeecCC
Q 022688 195 RITVKRYD 202 (293)
Q Consensus 195 ~i~v~~~~ 202 (293)
.+.+.+..
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 45555553
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.9e-09 Score=76.41 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCCCCC
Q 022688 134 SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (293)
Q Consensus 134 ~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~ 205 (293)
..+++++|+++|++||.|..+.++. ...|||||+|++.++|..|+..+++ +. ++.|.|.++...+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~----g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LV----DNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CS----SSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CC----CCeEEEEEccCCC
Confidence 5689999999999999999999984 4458999999999999999998665 33 8889999886544
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.10 E-value=3.3e-11 Score=86.44 Aligned_cols=69 Identities=23% Similarity=0.252 Sum_probs=57.9
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeEEEEEeeCCC---CcEEEEEeCChhhHHHHHHhcCCccCCCcCCC
Q 022688 129 VRGLPSSASWQDLKDHM------------RKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (293)
Q Consensus 129 v~nl~~~~~~~~l~~~f------------~~~G~i~~~~~~~~~~---~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g 193 (293)
+.||+..+++++|++.| ++||.|..+.++.+.. .|||||+|.+.++|.+|+..|||..+. |
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~----G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN----G 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET----T
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC----C
Confidence 45566667777666655 9999999999998764 379999999999999999999999999 9
Q ss_pred ceeEeecC
Q 022688 194 GRITVKRY 201 (293)
Q Consensus 194 ~~i~v~~~ 201 (293)
+.|.|..+
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99988765
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=1.8e-10 Score=79.03 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=60.6
Q ss_pred CCCCeEEEcCCCCC-----CcH----HHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCce
Q 022688 4 RFSRTIYVGNLPSD-----IRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (293)
Q Consensus 4 ~~~~~l~V~nLp~~-----~t~----~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~ 74 (293)
=|.-||+|.-++.. +-+ .+|.+.|++||+|..+++..+ -+||+|.+.++|.+|++ |||..++|+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 36678999777643 222 468899999999999999855 39999999999999999 9999999999
Q ss_pred EEEEEcC
Q 022688 75 LRVELAH 81 (293)
Q Consensus 75 l~v~~~~ 81 (293)
|+|.+..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9998754
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=2.9e-09 Score=77.57 Aligned_cols=76 Identities=11% Similarity=0.223 Sum_probs=64.7
Q ss_pred CCCCCcceEEEcCCCCC-CCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCC-hhhHHHHHHhcC--CccCCCcCCCc
Q 022688 119 ISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTN-PEDMKYAIRKLD--DTEFRNPWARG 194 (293)
Q Consensus 119 ~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~-~~~A~~a~~~l~--g~~~~~~~~g~ 194 (293)
....+++.|+|+||+.. ++.++|+++|+.||+|.+|.+..+.. .|||.|.+ .++|..|+..|+ +..+. +.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~----g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLR----NK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTT----SS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEe----Cc
Confidence 34567889999999999 99999999999999999999988774 79999999 799999999995 55565 55
Q ss_pred eeEeec
Q 022688 195 RITVKR 200 (293)
Q Consensus 195 ~i~v~~ 200 (293)
.+.+..
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 566554
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.92 E-value=2.8e-09 Score=87.17 Aligned_cols=77 Identities=25% Similarity=0.272 Sum_probs=63.6
Q ss_pred CCCeEEEcCCC-----CCCcHHHHHHHHHhcCCeeEEEEec-------CCCCCcEEEEEECCHHHHHHHHHhhCCCccCC
Q 022688 5 FSRTIYVGNLP-----SDIREYEVEDLFYKYGRILDIELKI-------PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (293)
Q Consensus 5 ~~~~l~V~nLp-----~~~t~~~l~~~F~~~G~I~~v~i~~-------~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g 72 (293)
.+..+.+.|+- .+-.+++|.+.|++||+|..+.|.. ++.++|++||+|.+.++|.+|+..|||..|+|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 34455555552 2246788999999999999999953 23678999999999999999999999999999
Q ss_pred ceEEEEEcC
Q 022688 73 CRLRVELAH 81 (293)
Q Consensus 73 ~~l~v~~~~ 81 (293)
+.|.|.+..
T Consensus 203 r~i~~~~~~ 211 (222)
T 3dxb_A 203 RKVVAEVYD 211 (222)
T ss_dssp SBCEEEECC
T ss_pred eEEEEEEcC
Confidence 999999975
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=9.7e-09 Score=70.15 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=60.2
Q ss_pred CcceEEEcCCC----CCCCH----HHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCc
Q 022688 123 SEYRVIVRGLP----SSASW----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (293)
Q Consensus 123 ~~~~l~v~nl~----~~~~~----~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~ 194 (293)
+..+|+|.-.+ .+... .+|.+.|.+||.|..+++..+. +||+|.+.++|.+|+. |||..+. |+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~----Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELL----NR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEET----TE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeC----Ce
Confidence 44577777665 23334 5799999999999999999975 8999999999999998 9999999 99
Q ss_pred eeEeecCC
Q 022688 195 RITVKRYD 202 (293)
Q Consensus 195 ~i~v~~~~ 202 (293)
.|+|..+.
T Consensus 77 ~LkV~lkt 84 (91)
T 2dnr_A 77 TITIALKS 84 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998875
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.80 E-value=3.4e-08 Score=69.10 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhc-----CCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKY-----GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~-----G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
..++|-|-|||..+++..|+.+++.+ |.|+.|.+..+ -+-|+|+|.+...|.+|.-.|+|..|.|+.|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 47899999999999999999999999 99999999766 56799999999999999888999999999999974
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=2.4e-08 Score=68.51 Aligned_cols=70 Identities=9% Similarity=0.188 Sum_probs=59.7
Q ss_pred CcceEEEcCCCCC-----CCH----HHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCC
Q 022688 123 SEYRVIVRGLPSS-----ASW----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (293)
Q Consensus 123 ~~~~l~v~nl~~~-----~~~----~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g 193 (293)
+..+|+|.-++.. ... .+|.+.|.+||.|..+++..+. +||+|.+.++|.+|+. |+|.++. |
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~----G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVK----G 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEET----T
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeC----C
Confidence 4568888877633 222 4699999999999999999975 9999999999999998 9999999 9
Q ss_pred ceeEeecC
Q 022688 194 GRITVKRY 201 (293)
Q Consensus 194 ~~i~v~~~ 201 (293)
+.|+|..-
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99998764
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1.4e-06 Score=60.54 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=63.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHh-----cCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYK-----YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~-----~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 78 (293)
.-..+|.|.|||+.+.++.|.-+|+. -|+|..+.... +-|+|+|.+.+.|+..++ -....|.+..|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 45789999999999999999999986 25899998863 689999999999999998 45688899999998
Q ss_pred EcCCC
Q 022688 79 LAHGG 83 (293)
Q Consensus 79 ~~~~~ 83 (293)
.....
T Consensus 80 P~~~~ 84 (104)
T 2dhx_A 80 PAPPR 84 (104)
T ss_dssp ECCCC
T ss_pred cCCCC
Confidence 75543
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.41 E-value=2.2e-06 Score=59.83 Aligned_cols=78 Identities=18% Similarity=0.130 Sum_probs=65.6
Q ss_pred CCCCCeEEEcCCCCCC-c----HHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEE
Q 022688 3 GRFSRTIYVGNLPSDI-R----EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (293)
Q Consensus 3 ~~~~~~l~V~nLp~~~-t----~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 77 (293)
+.-.++|+|.||+.++ . .+.++++|..|+++..+..... -.=..|.|.++++|.+|-..|++..|.|+.|+|
T Consensus 2 s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CSCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3456889999998875 2 3577999999999988877644 235789999999999999999999999999999
Q ss_pred EEcCCC
Q 022688 78 ELAHGG 83 (293)
Q Consensus 78 ~~~~~~ 83 (293)
.++...
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999844
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.38 E-value=7.4e-07 Score=72.67 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=55.7
Q ss_pred CCHHHHHHHHhhcCCeEEEEEeeCCCC--------cEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecCC
Q 022688 136 ASWQDLKDHMRKAGDVCFAEVSRDSEG--------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (293)
Q Consensus 136 ~~~~~l~~~f~~~G~i~~~~~~~~~~~--------g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (293)
-.+++|.+.|++||.|..+.+..+..+ |++||+|.+.++|.+|+..|||..+. |+.|.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~----gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA----GRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC----CeEEEEEEcC
Confidence 356789999999999999999865432 69999999999999999999999999 9999988764
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.30 E-value=3.9e-06 Score=58.74 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=65.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhc-----CCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKA-----GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
...+|-+-|||..++...|+.+.+++ |.+..+.+..+. +-|+|+|.+...|.+|.-.|+|.+|. |+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~ef~----gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQFQ----GKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEEET----TEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCeeec----CeEEE
Confidence 35689999999999999999999999 999888888776 67999999999999999999999999 99998
Q ss_pred eec
Q 022688 198 VKR 200 (293)
Q Consensus 198 v~~ 200 (293)
+..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 753
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.95 E-value=4.4e-05 Score=54.77 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=60.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCC-ceEEEEEcC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-CRLRVELAH 81 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g-~~l~v~~~~ 81 (293)
.+.|.|-++|+.. ...|...|++||.|.+.... ....+..|.|.+..+|++||. .||..|+| -.|-|.+..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 6789999999985 67788999999999988762 336799999999999999999 79999985 667777754
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.94 E-value=3.1e-05 Score=53.12 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=54.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecC-----CCCCcEEEEEECCHHHHHHHHHhhCCCccCC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g 72 (293)
+.|.|++||+.+|++++.+.++.+..+........ .....-|||.|.+.+++....+.++|..|-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 57899999999999999999999988776666321 1234679999999999999999999988843
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.91 E-value=3.5e-05 Score=52.83 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=44.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhh
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (293)
.+.++| ++|+++...||.++|+.||.|.--.|.. .-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidD-----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEET-----TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcC-----CeEEEEecCHHHHHHHHHhc
Confidence 466777 9999999999999999999654334442 47999999999999999965
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.72 E-value=4.4e-05 Score=52.49 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=43.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhC
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (293)
+.++| ++|+++...||.++|+.||.|. |....+ .-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidD----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEET----TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 45667 9999999999999999999443 333322 479999999999999999664
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=0.0004 Score=48.39 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=61.5
Q ss_pred ceEEEcCCCCCCC-----HHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEee
Q 022688 125 YRVIVRGLPSSAS-----WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (293)
Q Consensus 125 ~~l~v~nl~~~~~-----~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~ 199 (293)
.+|+|.||+.++- .+.++++|..|+++......+.- .-..|.|.+.++|.+|...||+..+. |..+++.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF--RRirv~F~~~~~A~~AR~~Lh~~~f~----g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF--KRVRINFSNPLSAADARLRLHKTEFL----GKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT--TEEEEECSSTTHHHHHHHTSTTSEET----TEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc--eEEEEEeCChHHHHHHHHHhccceec----CceeEEE
Confidence 4899999987662 25789999999998887776654 36889999999999999999999999 8899999
Q ss_pred cCC
Q 022688 200 RYD 202 (293)
Q Consensus 200 ~~~ 202 (293)
.+.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 886
No 390
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.29 E-value=0.00057 Score=49.70 Aligned_cols=76 Identities=24% Similarity=0.302 Sum_probs=56.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEE-Eec---------------CC-CCCcEEEEEECCHHHHHHHHHhhC
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKI---------------PP-RPPCYCFVEFENARDAEDAIRGRD 66 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~-i~~---------------~~-~~~g~afV~f~~~~~A~~A~~~l~ 66 (293)
.....|.|-+.|+.. ...|.+.|++||.|.+-. +.. +. ...++..|+|.+..+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 456778888996655 456778899999987721 110 10 135788999999999999999 89
Q ss_pred CCccCCceEEEEEcC
Q 022688 67 GYNFDGCRLRVELAH 81 (293)
Q Consensus 67 g~~i~g~~l~v~~~~ 81 (293)
|..|+|..|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999999998875
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.23 E-value=0.00027 Score=48.73 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=51.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEec---C--CCCCcEEEEEECCHHHHHHHHHhhCCCccC
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---P--PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~---~--~~~~g~afV~f~~~~~A~~A~~~l~g~~i~ 71 (293)
-+-.|.|+.||+.+|++++.+.++.+-++....... + .....-|||.|.+.+++....+.++|..|-
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 456899999999999999998888765553333211 1 112356899999999999999999998874
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.07 E-value=0.0032 Score=42.99 Aligned_cols=64 Identities=19% Similarity=0.382 Sum_probs=56.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC------cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~------g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
..|.|.+||+.+|++++.+.++.+..+....+...... .-|||.|.+.+++..-.+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 37899999999999999999999998877777665432 38999999999999999999999886
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.0042 Score=43.08 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=53.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhc-----CCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeE
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKA-----GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~ 197 (293)
...+|.|.|||+.+.++.|.-+|++- |.|..+.... +-|+|+|.+.+.|+..+++ ....+. +..+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~----~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELH----GAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSS----SSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-Ccceec----CeEEE
Confidence 34699999999999999999999982 4888888766 4799999999999999875 122333 45555
Q ss_pred eecC
Q 022688 198 VKRY 201 (293)
Q Consensus 198 v~~~ 201 (293)
|...
T Consensus 78 V~P~ 81 (104)
T 2dhx_A 78 LRPA 81 (104)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 5543
No 394
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.89 E-value=0.00053 Score=61.26 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=43.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 022688 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (293)
Q Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 63 (293)
..++|+|. .|..+++.+|.+.|++||+|.++.+..+. ..||.|||.+.++|+.++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 35789996 89999999999999999999999887542 4799999999999998776
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.84 E-value=0.0068 Score=41.51 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=44.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcC
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~ 183 (293)
..++| ++|.++...||.++|+.||.|. |.-+.|. .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 35555 9999999999999999999554 4444454 89999999999999998663
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.81 E-value=0.006 Score=43.67 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=57.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCCccCCCcCCCceeEeecC
Q 022688 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (293)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (293)
....-|.|.+.|+.. ...+...|++||+|..... ...++.-.|.|.+..+|++||. .||..+.+ +..|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g---~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGE---SIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETT---TEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecC---CEEEEEEEC
Confidence 345688999999885 6778889999999988776 3344699999999999999999 58888862 345566653
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.58 E-value=0.0049 Score=42.38 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=43.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcC
Q 022688 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~ 183 (293)
.++| ++|.++...||.++|+.||.| .|.-+.|. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999944 34445554 89999999999999999764
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.77 E-value=0.012 Score=40.48 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=51.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCC------cEEEEEeCChhhHHHHHHhcCCccCC
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~------g~~fv~f~~~~~A~~a~~~l~g~~~~ 188 (293)
-.|.|..||+.+|++++.+.++.+-.+....+...... ..|||.|.+.++...-.+.++|..+.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 48999999999999999988888766544443333221 37999999999999999999999886
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.91 E-value=0.019 Score=51.31 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=42.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHh
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~ 181 (293)
...|+|. .|..+++.+|.+.|++||+|..+.+..+. +.|+.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHhc
Confidence 4589997 79999999999999999999999888755 34999999999998877653
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.89 E-value=0.03 Score=40.69 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=52.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCCeEE-EEEee--------------CC---CCcEEEEEeCChhhHHHHHHhcCCc
Q 022688 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSR--------------DS---EGTYGVVDYTNPEDMKYAIRKLDDT 185 (293)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~--------------~~---~~g~~fv~f~~~~~A~~a~~~l~g~ 185 (293)
...|.|.+.|+... ..+.+.|++||.|.. +.... -+ ..+...|+|++..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34788888866654 567778999999865 21111 01 23478999999999999998 7888
Q ss_pred cCCCcCCCceeEeecCC
Q 022688 186 EFRNPWARGRITVKRYD 202 (293)
Q Consensus 186 ~~~~~~~g~~i~v~~~~ 202 (293)
.+. |.-|-|.+..
T Consensus 85 ii~----G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFN----GVLLGVIPYT 97 (132)
T ss_dssp EET----TEECEEEECC
T ss_pred EeC----cEEEEEEECC
Confidence 888 6666666654
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.35 E-value=0.26 Score=44.79 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhC
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (293)
...++|+ +|+.+...+|.++|+.||.| +|...- ...|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS----SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc----CCeEEEEECCHHHHHHHHHHHH
Confidence 3567776 99999999999999999954 443332 3479999999999999999875
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=89.36 E-value=1.7 Score=28.03 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=45.3
Q ss_pred eEEEcCCC-CCCcHHHHHHHHHhcC-----CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEEcC
Q 022688 8 TIYVGNLP-SDIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (293)
Q Consensus 8 ~l~V~nLp-~~~t~~~l~~~F~~~G-----~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~~~ 81 (293)
+|||..=- ..+.+.+|..++..-+ .|-.|.+. ..|.||+-.. +.|..+++.|++..+.|+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 56773322 3378888888887544 45566665 3589999887 47888999999999999999998754
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=85.03 E-value=6.5 Score=26.12 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=52.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCceEEEEE
Q 022688 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (293)
Q Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 79 (293)
..++-|.|-|+|..+-..++.-.....|---.|... -|-|+|.|.+.++-..|+..|-. -....|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqklln--hnnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLN--HNNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEE--TTTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHh--cCCCEEEEEE
Confidence 567889999999999999988888888865566655 46799999999999999986621 1234555553
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=74.75 E-value=8.1 Score=34.95 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=43.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC
Q 022688 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (293)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g 184 (293)
..++|+ +|..+...+|.++|+.||.+ .|.-+.+. .|||.|.+.+.|..+++.+..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHh
Confidence 355555 88899999999999999954 34444443 899999999999999998753
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=73.69 E-value=17 Score=24.12 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=49.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEeCChhhHHHHHHhcCC
Q 022688 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (293)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~fv~f~~~~~A~~a~~~l~g 184 (293)
..+.+.|-|+|..+-..++--...-.|-.-+|.+.. |.|.|.|.+.++..-|+.+|-+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid----gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHHEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHHHh
Confidence 457889999999999999888888889888888776 5799999999999999887643
No 406
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.60 E-value=15 Score=24.31 Aligned_cols=58 Identities=9% Similarity=0.143 Sum_probs=42.1
Q ss_pred eEEEcCCCCCCcHHHHHHHHHh-cC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhh
Q 022688 8 TIYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~-~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (293)
+.|+-.+...++..+|++.++. || +|..|.........--|||.+....+|......+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 3455567889999999999986 66 6777777544333457999999888887755433
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=69.90 E-value=6.7 Score=29.78 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=38.1
Q ss_pred eEEEcCCCCC---------CcHHHHHHHH--HhcCCeeEEEEecCCCCCcEEEEEECCHH-HHHHHHH
Q 022688 8 TIYVGNLPSD---------IREYEVEDLF--YKYGRILDIELKIPPRPPCYCFVEFENAR-DAEDAIR 63 (293)
Q Consensus 8 ~l~V~nLp~~---------~t~~~l~~~F--~~~G~I~~v~i~~~~~~~g~afV~f~~~~-~A~~A~~ 63 (293)
++.|-|+|.. .+..+|.+.| ..|.++.-..+.......|+|.|+|.+.- --..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 4567798872 4567899977 89988765555544556899999997543 3333444
No 408
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=66.52 E-value=18 Score=23.96 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=40.1
Q ss_pred EEEcCCCCCCcHHHHHHHHHh-cC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 022688 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (293)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~-~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 63 (293)
-|+-.++..++..+|++.++. || +|..|.........--|||.+....+|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 445567889999999999886 66 67777775543334579999988777665443
No 409
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=53.29 E-value=41 Score=24.75 Aligned_cols=57 Identities=9% Similarity=0.086 Sum_probs=40.0
Q ss_pred EEEcCCCCCCcHHHHHHHHHh-cC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhh
Q 022688 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (293)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~-~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (293)
.|+-.+...++..+|.+.++. || .|..|.........--|||.+....+|......+
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhh
Confidence 344467788999999988886 56 6777777543333456999998877777654433
No 410
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=52.52 E-value=48 Score=22.01 Aligned_cols=43 Identities=23% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHHHhcC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCC
Q 022688 23 VEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (293)
Q Consensus 23 l~~~F~~~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 67 (293)
|.+.+...| .|..+.+.. .-+||.||++...++...++....|
T Consensus 29 L~~~~~~~~l~i~~v~vP~--~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 29 MASRAEKEQLDVYSILASE--SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp HHHHHHHTTCCEEEEEECT--TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred HHHHHHhcCCcEEEEEEec--ccCCEEEEEEecchhHHHHHHCCCC
Confidence 333333333 355555542 4689999999999999888886655
No 411
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=50.92 E-value=47 Score=24.22 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=39.9
Q ss_pred EEEcCCCCCCcHHHHHHHHHh-cC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhh
Q 022688 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (293)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~-~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (293)
.|+-.+...++..+|.+.++. || +|..|.........--|||.+....+|......+
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhh
Confidence 344467788999999988876 56 6777777543333456999998877777654433
No 412
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=49.31 E-value=50 Score=24.51 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=40.1
Q ss_pred EEEcCCCCCCcHHHHHHHHHh-cC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHh
Q 022688 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRG 64 (293)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~-~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 64 (293)
.|+-.+...++..||.+.++. || +|..|.........--|||.+....+|......
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHh
Confidence 345567889999999998886 56 677777754322345699999888777665553
No 413
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=45.10 E-value=41 Score=24.81 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=39.2
Q ss_pred EEEcCCCCCCcHHHHHHHHHh-cC-CeeEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 022688 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (293)
Q Consensus 9 l~V~nLp~~~t~~~l~~~F~~-~G-~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 63 (293)
.|+-.+...++..+|.+.++. || .|..|.........--|||.+....+|.....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 344457788999999988875 56 67777775443335579999998877776544
No 414
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.58 E-value=10 Score=23.55 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=13.4
Q ss_pred CCeeEEEEecCCCCCcEEEEEECCH
Q 022688 31 GRILDIELKIPPRPPCYCFVEFENA 55 (293)
Q Consensus 31 G~I~~v~i~~~~~~~g~afV~f~~~ 55 (293)
|+|+.|.. .+..|||.|++.
T Consensus 28 GtV~kV~~-----~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDS-----AREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEET-----TTTEEEEEETTT
T ss_pred eEEEEEec-----CCcEEEEEEccC
Confidence 45555432 267899999884
No 415
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=41.59 E-value=58 Score=19.80 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=43.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhh
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (293)
..++.|.++...--...|.+.+.. ..|..+.+... .+.+.|+|.+.++...+++.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN---EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS---EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc---CCEEEEEECCHHHHHHHHHHc
Confidence 357889999988888999999999 88888888533 457788888666667777743
No 416
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=41.45 E-value=3.4 Score=30.64 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECC
Q 022688 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN 54 (293)
Q Consensus 21 ~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~ 54 (293)
+|+.++|...|.|+-+... +||+||+-.+
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~~ 30 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMTA 30 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeCc
Confidence 4666777778877665443 8999999763
No 417
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.34 E-value=84 Score=20.69 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=42.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeEEEEEeeCCCC-cEEEEEeCChhhHHHHHHhc
Q 022688 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~-g~~fv~f~~~~~A~~a~~~l 182 (293)
+.++.-+...++..+|++.++. |+ +|..+..+..+.+ ..|+|.+..-.+|.....++
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 4566667889999999999988 56 6677766655443 48999999888888766543
No 418
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=34.17 E-value=17 Score=23.32 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=13.7
Q ss_pred CCeeEEEEecCCCCCcEEEEEECCHH
Q 022688 31 GRILDIELKIPPRPPCYCFVEFENAR 56 (293)
Q Consensus 31 G~I~~v~i~~~~~~~g~afV~f~~~~ 56 (293)
|+|+.|.. .+..|||.|.+..
T Consensus 45 GTI~kV~~-----~~e~ClV~F~D~S 65 (79)
T 2m0o_A 45 GTIKKVDS-----AREVCLVQFEDDS 65 (79)
T ss_dssp EEEEEEET-----TTTEEEEEETTSC
T ss_pred EEEEEecc-----CCCEEEEEEcCCC
Confidence 55555433 2678999998753
No 419
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=33.96 E-value=18 Score=22.59 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=9.8
Q ss_pred CCcEEEEEECCH
Q 022688 44 PPCYCFVEFENA 55 (293)
Q Consensus 44 ~~g~afV~f~~~ 55 (293)
..+.|+|.|.+.
T Consensus 40 ~~gtC~V~F~D~ 51 (66)
T 2eqj_A 40 LKQSCFIIFEDS 51 (66)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 378999999874
No 420
>2vog_B BCL-2-modifying factor; protein-protein complex, BH3, apoptosis, Pro-surviVal; 1.9A {Mus musculus}
Probab=33.24 E-value=19 Score=17.58 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=13.1
Q ss_pred eehhhhhHHHhhhh-hhc
Q 022688 274 LITDVQTFHSLVCL-DEF 290 (293)
Q Consensus 274 ~~~~~~~~~~~~~~-~~~ 290 (293)
+.+.++--+-|||+ |.|
T Consensus 3 ~~~E~~Ia~KLQcI~DQF 20 (27)
T 2vog_B 3 HRAEVQIARKLQCIADQF 20 (27)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 45778888999999 766
No 421
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=32.33 E-value=41 Score=27.45 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=25.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEE
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i 38 (293)
..+.|+|||+.++..-|..++.. +.+..+.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 46789999999999999999988 66655444
No 422
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=31.81 E-value=1.5e+02 Score=21.58 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=41.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeEEEEEeeCCCC-cEEEEEeCChhhHHHHHHh
Q 022688 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~-g~~fv~f~~~~~A~~a~~~ 181 (293)
+.++.-+...++..+|++.++. |+ +|..|..+..+.+ .-|||.+..-.+|......
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 4566667889999999999987 56 6777766655543 3799999888777766544
No 423
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=31.43 E-value=1.5e+02 Score=21.69 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=41.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeEEEEEeeCCCC-cEEEEEeCChhhHHHHHHh
Q 022688 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~-g~~fv~f~~~~~A~~a~~~ 181 (293)
+.++.-+...++..+|++.++. |+ +|..|..+..+.+ .-|||.+..-.+|......
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHh
Confidence 4556667889999999999987 56 6777766655543 3799999888777766554
No 424
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=30.30 E-value=26 Score=28.82 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=26.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEE
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i 38 (293)
...+.|+|||+.++..-|..++.....+..+.+
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 346789999999999999999986555655544
No 425
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.24 E-value=8.8 Score=23.50 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=10.2
Q ss_pred CCcEEEEEECCHH
Q 022688 44 PPCYCFVEFENAR 56 (293)
Q Consensus 44 ~~g~afV~f~~~~ 56 (293)
.+..|||.|++..
T Consensus 34 ~~~~ClV~FeD~s 46 (63)
T 2e5q_A 34 SKQSCLVTFEDNS 46 (63)
T ss_dssp TTSEEEEEETTSC
T ss_pred CCCEEEEEEccCc
Confidence 4678999998753
No 426
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=29.66 E-value=1.6e+02 Score=21.66 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=41.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-CeEEEEEeeCCCC-cEEEEEeCChhhHHHHHHh
Q 022688 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (293)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~-~G-~i~~~~~~~~~~~-g~~fv~f~~~~~A~~a~~~ 181 (293)
+.++.-+....+..+|++.++. |+ +|..|..+..+.+ .-|||.+..-.+|.+....
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 4566667888999999998887 56 6677766655543 3899999988777766543
No 427
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=28.22 E-value=99 Score=23.60 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=28.7
Q ss_pred EEcCCCCCCcHHHHH--------HHHHhcCCeeEEEEecCCCCCcEEEEEECC
Q 022688 10 YVGNLPSDIREYEVE--------DLFYKYGRILDIELKIPPRPPCYCFVEFEN 54 (293)
Q Consensus 10 ~V~nLp~~~t~~~l~--------~~F~~~G~I~~v~i~~~~~~~g~afV~f~~ 54 (293)
|+-.||.+++.++-. ++|..+|-|.++.|+.++.....|-|-|.+
T Consensus 74 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~ 126 (185)
T 2ns6_A 74 VEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISE 126 (185)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECC
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEee
Confidence 344899999988743 455667888888887533223355555544
No 428
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=26.77 E-value=1e+02 Score=18.10 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=40.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEEC---CHHHHHHHHH
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE---NARDAEDAIR 63 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~---~~~~A~~A~~ 63 (293)
.++.|.++....-...|.+.+.....|..+.+... .+-+.|.|. +.++...++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA---LEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec---CCEEEEEECCCCCHHHHHHHHH
Confidence 46788888888888899999999888988888643 456788884 3344555555
No 429
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=26.05 E-value=1e+02 Score=17.85 Aligned_cols=57 Identities=9% Similarity=0.107 Sum_probs=39.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECC---HHHHHHHHHhh
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN---ARDAEDAIRGR 65 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~---~~~A~~A~~~l 65 (293)
..++.|.++....-...|...+.....|..+.+... .+.+.|.|.. .+....++..+
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 4 TINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA---LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc---CCEEEEEECCCCCHHHHHHHHHHc
Confidence 346788888877677889999999888888888643 4678888864 33444555533
No 430
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=25.13 E-value=72 Score=21.60 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=18.7
Q ss_pred CcHHHHHHHHHhcCCeeEEEEe
Q 022688 18 IREYEVEDLFYKYGRILDIELK 39 (293)
Q Consensus 18 ~t~~~l~~~F~~~G~I~~v~i~ 39 (293)
.+++.|.++|+.+|.|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4678899999999999887775
No 431
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=24.35 E-value=30 Score=27.96 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=24.9
Q ss_pred eEEEcCCCCCCcHHHHHHHHHhcCCeeEEEE
Q 022688 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i 38 (293)
-..|+|||+.++...|..++...+.+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 4488999999999999999987666655544
No 432
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=23.94 E-value=1.1e+02 Score=26.60 Aligned_cols=60 Identities=23% Similarity=0.280 Sum_probs=41.1
Q ss_pred eEEEcCCCCCC----cHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCCccCCce
Q 022688 8 TIYVGNLPSDI----REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (293)
Q Consensus 8 ~l~V~nLp~~~----t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~ 74 (293)
--+||||..-. ....+.++..+||+|..+.+- +.-+|...+++.|+.++. -++..+.+++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 34788876432 246678888899999888773 245677789999998886 3444454443
No 433
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=23.77 E-value=1.2e+02 Score=18.05 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=42.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEEC----CHHHHHHHHHhh
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE----NARDAEDAIRGR 65 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~----~~~~A~~A~~~l 65 (293)
.++.|.++...--...|.+.+.....|..+.+... .+.+.|+|. +.++...+++.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL---QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG---GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec---CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46888899888888899999999888988888543 457889985 456666777643
No 434
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=23.58 E-value=35 Score=20.62 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=9.4
Q ss_pred CcEEEEEECCHH
Q 022688 45 PCYCFVEFENAR 56 (293)
Q Consensus 45 ~g~afV~f~~~~ 56 (293)
...|+|.|.+..
T Consensus 31 ~~~clV~F~D~s 42 (58)
T 4hcz_A 31 REVCLVQFEDDS 42 (58)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 568999998753
No 435
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.30 E-value=70 Score=29.82 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=39.5
Q ss_pred CCCCCCcHHHHHHHHH----hcCCeeEEEEecC--CCCCcEEEEEECCHHHHHHHHHhh
Q 022688 13 NLPSDIREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGR 65 (293)
Q Consensus 13 nLp~~~t~~~l~~~F~----~~G~I~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l 65 (293)
..+++.+--||..+|- .+|-|+.+.|..- .....+++|.|.+.++|..|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3455555557888884 6899999988442 334567889999999999998765
No 436
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=23.24 E-value=67 Score=25.78 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=23.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEE
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIE 37 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~ 37 (293)
..+.|+|||+.++...|..++.....+..+.
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~ 121 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMH 121 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEE
Confidence 3578999999999999999887643444443
No 437
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=22.23 E-value=60 Score=25.97 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=24.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHHHhcCCeeEEE
Q 022688 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIE 37 (293)
Q Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~ 37 (293)
..+.|+|||+.++..-|..++.....+..+.
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~ 126 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAV 126 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEE
Confidence 3578999999999999999998654444443
No 438
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=21.88 E-value=1.9e+02 Score=19.64 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCeeEEEEecCCC-CCcEEEEEECC
Q 022688 21 YEVEDLFYKYGRILDIELKIPPR-PPCYCFVEFEN 54 (293)
Q Consensus 21 ~~l~~~F~~~G~I~~v~i~~~~~-~~g~afV~f~~ 54 (293)
.+|.+.+...| |.+..|...+. ..-|+++++.+
T Consensus 27 PEv~~~L~~aG-i~~ysIfl~~~~~~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLKSHG-AHNYAIYLDKARNLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETTTTEEEEEEEESC
T ss_pred HHHHHHHHHcC-CeEEEEEEECCCCeEEEEEEEcC
Confidence 36778888887 77777765543 45799999988
No 439
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=21.86 E-value=74 Score=24.54 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCC
Q 022688 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (293)
Q Consensus 18 ~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 68 (293)
+.+++|......|.+. |+..+.-+-.-||+|.++++....+..|.|.
T Consensus 65 ~~~~~I~~Ei~aYnpL----iP~~~~l~ATl~IE~~d~~er~~~L~~L~Gi 111 (194)
T 3fjv_A 65 FDEDGIQAELDAYLPL----VPDGSNLKATLQIEYENETQRRAALARLVGI 111 (194)
T ss_dssp CSHHHHHHHHHHHGGG----CCCSSEEEEEEEECCSSHHHHHHHHHHTTTG
T ss_pred CCHHHHHHHHHHhccc----CCCCCcEEEEEEEEcCCHHHHHHHHHHhcCc
Confidence 3566777777777653 1222233457899999999999999999884
No 440
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=21.50 E-value=64 Score=17.42 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHhc
Q 022688 16 SDIREYEVEDLFYKY 30 (293)
Q Consensus 16 ~~~t~~~l~~~F~~~ 30 (293)
.++|.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 458999999999875
No 441
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=21.19 E-value=68 Score=27.82 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=32.0
Q ss_pred EEcCCCC---CCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 022688 10 YVGNLPS---DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (293)
Q Consensus 10 ~V~nLp~---~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 63 (293)
+|||+.. .-....+.++..+||+|..+.+- +.=+|...+++.++.++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH
Confidence 4666532 23455678889999999888763 123455667888877775
No 442
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.66 E-value=1.1e+02 Score=20.96 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=26.4
Q ss_pred CeeEEEEecCCCCCcEEEEEECCHHHHHHHHHhhCCC
Q 022688 32 RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (293)
Q Consensus 32 ~I~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 68 (293)
.|.++.. .+..+||-|||=.++.++..|+..+.+.
T Consensus 40 ~I~Si~~--~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVA--PEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEE--CTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEe--cCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 3556544 3456999999999999999999866543
No 443
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=20.64 E-value=1.7e+02 Score=18.49 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=40.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHHhcCCeeEEEEecCCCCCcEEEEEECC----HHHHHHHHHhh
Q 022688 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN----ARDAEDAIRGR 65 (293)
Q Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~G~I~~v~i~~~~~~~g~afV~f~~----~~~A~~A~~~l 65 (293)
..++.|.++....-...|...+.....|..+.+... .+.+.|.|.. .++...++..+
T Consensus 4 ~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~---~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 4 TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE---NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT---TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc---CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 346778888777667789999998888888888644 4678888853 34556666644
No 444
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=20.64 E-value=72 Score=21.48 Aligned_cols=22 Identities=23% Similarity=0.095 Sum_probs=15.3
Q ss_pred EcCCCCCCcHHHHHHHH-HhcCC
Q 022688 11 VGNLPSDIREYEVEDLF-YKYGR 32 (293)
Q Consensus 11 V~nLp~~~t~~~l~~~F-~~~G~ 32 (293)
|.+|.+.+|..||...+ ...|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 34677889999988854 44454
No 445
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.47 E-value=87 Score=26.67 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=19.7
Q ss_pred eEEEcCCCCCCcHHHHHHHHHh
Q 022688 8 TIYVGNLPSDIREYEVEDLFYK 29 (293)
Q Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~ 29 (293)
...|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999998875
No 446
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=20.04 E-value=1.3e+02 Score=21.50 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=30.8
Q ss_pred EcCCCCCCcHHHHHHHHH-hcC--CeeEEEE-ec-----------C-CCCCcEEEEEECC
Q 022688 11 VGNLPSDIREYEVEDLFY-KYG--RILDIEL-KI-----------P-PRPPCYCFVEFEN 54 (293)
Q Consensus 11 V~nLp~~~t~~~l~~~F~-~~G--~I~~v~i-~~-----------~-~~~~g~afV~f~~ 54 (293)
|-++...++++++.+++. .++ +|..+.+ .. + ....+|.|+.|.+
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 566777799999999995 444 6777766 11 2 3345788888876
Done!