Query 022689
Match_columns 293
No_of_seqs 243 out of 1045
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2606 OTU (ovarian tumor)-li 100.0 7.9E-73 1.7E-77 512.1 22.2 277 1-293 17-298 (302)
2 COG5539 Predicted cysteine pro 100.0 3.6E-33 7.9E-38 252.7 6.4 270 1-291 17-305 (306)
3 PF02338 OTU: OTU-like cystein 99.9 2.6E-27 5.7E-32 192.2 6.7 116 148-287 1-121 (121)
4 KOG3288 OTU-like cysteine prot 99.7 2.9E-18 6.2E-23 153.4 5.9 121 142-291 110-231 (307)
5 PF10275 Peptidase_C65: Peptid 99.7 5.4E-17 1.2E-21 147.7 7.1 102 173-292 138-244 (244)
6 KOG3991 Uncharacterized conser 99.6 4.6E-16 1E-20 137.4 8.4 143 128-293 51-256 (256)
7 KOG2605 OTU (ovarian tumor)-li 99.4 2.1E-13 4.5E-18 130.4 5.5 133 131-292 207-343 (371)
8 COG5539 Predicted cysteine pro 99.0 2.3E-10 5E-15 104.7 1.9 112 147-291 117-230 (306)
9 PF05415 Peptidase_C36: Beet n 89.7 0.65 1.4E-05 36.0 4.4 65 147-248 3-69 (104)
10 PF14282 FlxA: FlxA-like prote 77.1 12 0.00026 29.7 6.9 54 6-60 25-78 (106)
11 PF04645 DUF603: Protein of un 76.8 5.8 0.00013 34.4 5.3 45 2-53 107-151 (181)
12 PF05412 Peptidase_C33: Equine 69.6 3.5 7.6E-05 33.0 2.1 19 146-164 3-21 (108)
13 PF08232 Striatin: Striatin fa 65.3 13 0.00027 31.0 4.7 43 8-55 26-68 (134)
14 PF06657 Cep57_MT_bd: Centroso 62.9 22 0.00048 26.8 5.3 44 4-54 28-71 (79)
15 COG5007 Predicted transcriptio 62.5 6.1 0.00013 30.0 2.1 58 130-190 3-62 (80)
16 PRK09784 hypothetical protein; 58.9 5.1 0.00011 36.9 1.3 25 136-160 194-218 (417)
17 PF07851 TMPIT: TMPIT-like pro 58.0 18 0.00038 34.8 4.8 41 2-53 41-81 (330)
18 PF05529 Bap31: B-cell recepto 55.3 36 0.00079 29.6 6.1 54 7-61 125-181 (192)
19 PF06858 NOG1: Nucleolar GTP-b 50.4 40 0.00086 24.1 4.5 36 128-164 2-37 (58)
20 KOG4100 Uncharacterized conser 46.2 12 0.00026 30.4 1.4 54 154-230 15-80 (125)
21 KOG2605 OTU (ovarian tumor)-li 44.9 4.8 0.0001 39.2 -1.2 130 140-292 53-185 (371)
22 PF04420 CHD5: CHD5-like prote 44.2 94 0.002 26.5 6.8 54 5-58 38-91 (161)
23 PRK11913 phhA phenylalanine 4- 43.4 39 0.00085 31.6 4.6 108 119-244 60-174 (275)
24 cd00361 arom_aa_hydroxylase Bi 43.3 31 0.00068 31.3 3.8 109 119-245 38-153 (221)
25 PF02403 Seryl_tRNA_N: Seryl-t 43.0 91 0.002 24.3 6.1 45 6-52 49-93 (108)
26 KOG4364 Chromatin assembly fac 41.3 1.4E+02 0.003 31.6 8.4 14 173-186 418-431 (811)
27 PF05159 Capsule_synth: Capsul 41.0 49 0.0011 30.0 4.9 55 226-292 5-64 (269)
28 PF10779 XhlA: Haemolysin XhlA 40.5 57 0.0012 23.8 4.3 43 2-49 8-50 (71)
29 TIGR00513 accA acetyl-CoA carb 40.1 57 0.0012 31.2 5.3 42 5-54 8-49 (316)
30 PRK05724 acetyl-CoA carboxylas 38.4 58 0.0013 31.2 5.0 41 6-54 9-49 (319)
31 PF06810 Phage_GP20: Phage min 37.2 95 0.0021 26.4 5.7 45 8-61 35-82 (155)
32 cd03346 eu_TrpOH Eukaryotic tr 36.4 56 0.0012 30.8 4.5 106 122-245 101-212 (287)
33 cd03345 eu_TyrOH Eukaryotic ty 35.9 1.7E+02 0.0036 27.9 7.5 105 121-243 99-209 (298)
34 PLN03230 acetyl-coenzyme A car 35.6 72 0.0016 31.7 5.3 41 6-54 79-119 (431)
35 KOG0642 Cell-cycle nuclear pro 34.6 44 0.00095 34.2 3.7 44 7-55 41-84 (577)
36 CHL00198 accA acetyl-CoA carbo 34.1 79 0.0017 30.3 5.2 42 6-55 12-53 (322)
37 PF08581 Tup_N: Tup N-terminal 32.9 1.2E+02 0.0026 22.9 5.0 20 33-52 57-76 (79)
38 cd03348 pro_PheOH Prokaryotic 31.7 68 0.0015 29.2 4.1 108 119-244 44-158 (228)
39 PF02388 FemAB: FemAB family; 31.3 1.1E+02 0.0023 30.1 5.8 44 6-51 248-291 (406)
40 COG0825 AccA Acetyl-CoA carbox 31.1 73 0.0016 30.2 4.3 46 5-58 7-52 (317)
41 TIGR01267 Phe4hydrox_mono phen 30.8 1E+02 0.0023 28.4 5.2 46 119-164 44-92 (248)
42 PF05381 Peptidase_C21: Tymovi 30.2 1.4E+02 0.003 23.9 5.2 47 232-289 48-94 (104)
43 COG5481 Uncharacterized conser 29.8 1.9E+02 0.0041 20.9 5.2 46 2-49 13-61 (67)
44 TIGR01270 Trp_5_monoox tryptop 29.6 79 0.0017 31.8 4.5 106 122-245 230-341 (464)
45 KOG4809 Rab6 GTPase-interactin 29.2 1.2E+02 0.0027 31.1 5.8 49 10-61 362-415 (654)
46 PRK10780 periplasmic chaperone 28.5 2.9E+02 0.0062 23.3 7.3 17 44-60 105-121 (165)
47 PF10224 DUF2205: Predicted co 27.0 1.4E+02 0.0031 22.6 4.5 30 7-48 23-52 (80)
48 smart00718 DM4_12 DM4/DM12 fam 27.0 47 0.001 25.8 2.0 31 126-163 6-37 (95)
49 cd03347 eu_PheOH Eukaryotic ph 26.9 97 0.0021 29.5 4.4 108 120-245 99-212 (306)
50 PF03255 ACCA: Acetyl co-enzym 26.2 7.5 0.00016 32.9 -2.8 39 5-51 5-43 (145)
51 PF07543 PGA2: Protein traffic 25.8 3.5E+02 0.0076 22.7 7.1 105 19-138 34-139 (140)
52 PRK10963 hypothetical protein; 25.8 55 0.0012 29.4 2.5 16 179-194 6-21 (223)
53 PF01381 HTH_3: Helix-turn-hel 24.3 1E+02 0.0023 20.4 3.1 29 216-244 24-52 (55)
54 PF02671 PAH: Paired amphipath 23.5 69 0.0015 21.1 2.1 36 155-192 4-39 (47)
55 PF04874 Mak16: Mak16 protein 22.8 1.5E+02 0.0033 23.5 4.1 32 95-135 2-33 (101)
56 TIGR01269 Tyr_3_monoox tyrosin 22.6 1.3E+02 0.0028 30.2 4.5 105 122-244 224-334 (457)
57 TIGR01268 Phe4hydrox_tetr phen 22.6 1.1E+02 0.0025 30.5 4.1 106 122-245 203-314 (436)
58 PF09032 Siah-Interact_N: Siah 22.0 1.9E+02 0.0042 21.9 4.4 47 9-58 5-51 (79)
59 KOG2223 Uncharacterized conser 21.9 90 0.0019 31.4 3.2 33 3-42 232-264 (586)
60 PF09304 Cortex-I_coil: Cortex 21.4 3.3E+02 0.0072 21.9 5.8 39 5-51 38-76 (107)
61 KOG0256 1-aminocyclopropane-1- 20.5 1E+02 0.0022 30.8 3.3 56 131-194 88-146 (471)
No 1
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-73 Score=512.11 Aligned_cols=277 Identities=44% Similarity=0.751 Sum_probs=240.4
Q ss_pred CcchhHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CCCCCcchhhhh
Q 022689 1 MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSN--GNEKSNLDNLVK 78 (293)
Q Consensus 1 l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~~El~~~~~~~~~--~~~~~~~~~~~~ 78 (293)
||+|||+|+|+||++||+|||+++||+| ++||+++.+|++||.+|++||.+||..+...... ...+...++++.
T Consensus 17 iLaRHr~E~keLq~ki~~mKk~a~k~~k----~~rK~~~~~~~~le~el~qkH~kEL~~~~~~~~~e~~~~e~~~~s~l~ 92 (302)
T KOG2606|consen 17 ILARHRRERKELQAKITSMKKAAPKGNK----KKRKELTEDIAKLEKELSQKHKKELEKLKLINESEVTPKENLIESVLS 92 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCccccCccccchhhhhc
Confidence 5899999999999999999999999996 8999999999999999999999999999753311 112223445555
Q ss_pred hhcccccccccCCCCCccchhhHHHHHHHHHHHH-HHHHHHH--hcccCCCchHHHHHHhHhccCCCeeeecCCCCCchH
Q 022689 79 AVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE-QRIQEEQ--SNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLY 155 (293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~k~~~r~~~r~~~~~~~~-~~i~~e~--~~~~~~r~~E~~~l~~~L~~~gL~i~~I~~DGnCLF 155 (293)
.++.++....++.|..||++|||.+++..++.++ ++|.+++ ++.++.+.+|.+.|.+.|...||.+++||+||||||
T Consensus 93 ~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY 172 (302)
T KOG2606|consen 93 PIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMFDIPADGHCLY 172 (302)
T ss_pred ccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccccCCCCchhhH
Confidence 5666666655555667888888776665555555 8887654 378999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHHHhhcCCCcCcHHHHHH
Q 022689 156 RAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRA 235 (293)
Q Consensus 156 rAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~A 235 (293)
+||+|||..+++ ...+++.||..+|+||+.|.++|.||+.++.+|+.. ..++|+.||+.|++|+.|||++||.|
T Consensus 173 ~aI~hQL~~~~~--~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~----~~~~f~~Yc~eI~~t~~WGgelEL~A 246 (302)
T KOG2606|consen 173 AAISHQLKLRSG--KLLSVQKLREETADYMREHVEDFLPFLLDEETGDSL----GPEDFDKYCREIRNTAAWGGELELKA 246 (302)
T ss_pred HHHHHHHHhccC--CCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccC----CHHHHHHHHHHhhhhccccchHHHHH
Confidence 999999998875 458999999999999999999999999999887643 26789999999999999999999999
Q ss_pred HHHhhcCcEEEEECCCCceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 022689 236 LTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 293 (293)
Q Consensus 236 lA~~l~~~I~V~~~~~~~~~~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~p~ 293 (293)
||++|++||.||+.++|+++||++|.. .+||.|+||+|+|+||+|||||.|.
T Consensus 247 lShvL~~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYNS~~~~ 298 (302)
T KOG2606|consen 247 LSHVLQVPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYNSVTPL 298 (302)
T ss_pred HHHhhccCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhcccccc
Confidence 999999999999999999999999853 6899999999999999999999884
No 2
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.6e-33 Score=252.75 Aligned_cols=270 Identities=18% Similarity=0.150 Sum_probs=213.9
Q ss_pred CcchhHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCcch--hhhh
Q 022689 1 MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLD--NLVK 78 (293)
Q Consensus 1 l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~~El~~~~~~~~~~~~~~~~~--~~~~ 78 (293)
++.+||.|.++||.+||.++|+++.|.+ +.| |+..|..|+..|..+|+-|+..+.....+.++-++.+ ++..
T Consensus 17 lt~kq~~e~~dlq~kI~~~~kql~~g~~----~qr--l~~k~~~ls~~ls~~~e~~i~k~~~~~~et~ea~q~~~l~~~q 90 (306)
T COG5539 17 LTEKQRFELKDLQTKITRIMKQLTFGRP----PQR--LNGKCLDLSYALSQKDEVEIEKAPKLRAETNEADQEDSLTPLQ 90 (306)
T ss_pred HHhhhhcccHHHHHHHHHHHHHHHccCc----hhh--hccccchHHHHhhhhHHHHhhhhhhhcchhhccCCCccCCCcc
Confidence 4689999999999999999999998875 333 9999999999999999999998864322111111111 1111
Q ss_pred hhccc------------cccccc-CCCCCccchhhHHHHHHHHHHHHHHHHHHHhcc----cCCCchHHHHHHhHhccCC
Q 022689 79 AVAGV------------TVISQH-DQAKPSKGTKRREKRAQQEAAREQRIQEEQSNI----VSDRTVEDEKLEKKLGPLG 141 (293)
Q Consensus 79 ~~~~~------------~~~~~~-~~~~~~k~~~r~~~r~~~~~~~~~~i~~e~~~~----~~~r~~E~~~l~~~L~~~g 141 (293)
..+.. +..... .+....++++||+.+..++.+....+++.++++ ++-...+...+...+...+
T Consensus 91 ~~~~~~iss~e~s~~qq~~nv~ed~p~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~ 170 (306)
T COG5539 91 NIPELGISSFEKSVSQQSINVLEDMPGQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATW 170 (306)
T ss_pred cCCccccccCcccccccccchhccCCCCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHh
Confidence 11111 111111 233456899999999999999888888766554 4447888889999999999
Q ss_pred CeeeecCCCCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHHHh
Q 022689 142 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEV 221 (293)
Q Consensus 142 L~i~~I~~DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m 221 (293)
+.-.+++|||+|+|.+|++||..+.....-...+.+|-.-+.|...|.+.|.+|.+++.++. ...|++||+.|
T Consensus 171 i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~-------m~~~dt~~ne~ 243 (306)
T COG5539 171 IVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLA-------MVLWDTYVNEV 243 (306)
T ss_pred hhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhh-------cchHHHHHhhh
Confidence 99999999999999999999997643212233588999999999999999999999988755 46899999999
Q ss_pred hcCCCcCcHHHHHHHHHhhcCcEEEEECCCCceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 022689 222 ESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 291 (293)
Q Consensus 222 ~~~~~WGG~lEL~AlA~~l~~~I~V~~~~~~~~~~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~ 291 (293)
..++.||+.+|+++||+.|++|++++...+|.+++++- +.+..+.+.|++|+|++| |||++.
T Consensus 244 ~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c-------~~~~~~e~~~~~Ha~a~G-H~n~~~ 305 (306)
T COG5539 244 LFDASDGITIEIQQLASLLKNPHYYTNTASPSIKCNIC-------GTGFVGEKDYYAHALATG-HYNFGE 305 (306)
T ss_pred cccccccchHHHHHHHHHhcCceEEeecCCceEEeecc-------ccccchhhHHHHHHHhhc-CccccC
Confidence 99999999999999999999999999999999987541 124557789999999999 999974
No 3
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.94 E-value=2.6e-27 Score=192.20 Aligned_cols=116 Identities=40% Similarity=0.676 Sum_probs=95.0
Q ss_pred CCCCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHh-cCcccccccccCccccchhhhhhhhhhHHHHHHHhhcCCC
Q 022689 148 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMR-DHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAA 226 (293)
Q Consensus 148 ~~DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~-~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~ 226 (293)
|||||||||||++||+..+.+ .+.+|..||+.+++||+ .|++.|.+|+.+ . .|.++++
T Consensus 1 pgDGnClF~Avs~~l~~~~~~-~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~--------------~------~~~~~~~ 59 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGGG-SEDNHQELRKAVVDYLRDKNRDKFEEFLEG--------------D------KMSKPGT 59 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-SS-STTTHHHHHHHHHHHHHTHTTTHHHHHHHH--------------H------HHTSTTS
T ss_pred CCCccHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhccchhhhhhhh--------------h------hhccccc
Confidence 799999999999999943210 57899999999999999 999999999854 1 8999999
Q ss_pred cCcHHHHHHHHHhhcCcEEEEECCCCceE----eCCCCCCCCCCCCCCeEEEEeccCCCCCCCcc
Q 022689 227 WGGELELRALTHCLRKHIMIYSGSFPDVE----MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHY 287 (293)
Q Consensus 227 WGG~lEL~AlA~~l~~~I~V~~~~~~~~~----~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHY 287 (293)
|||++||.|||++|+++|.||+...+... ++..+. +....++|+|+|+.+.|..|+||
T Consensus 60 Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 60 WGGEIELQALANVLNRPIIVYSSSDGDNVVFIKFTGKYP---PLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp HEEHHHHHHHHHHHTSEEEEECETTTBEEEEEEESCEES---TTTTTTSEEEEEETEEEEETTEE
T ss_pred cCcHHHHHHHHHHhCCeEEEEEcCCCCccceeeecCccc---cCCCCCeEEEEEcCCccCCCCCC
Confidence 99999999999999999999987655432 222111 22347899999999999999999
No 4
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.9e-18 Score=153.38 Aligned_cols=121 Identities=20% Similarity=0.405 Sum_probs=100.6
Q ss_pred CeeeecCCCCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHHHh
Q 022689 142 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEV 221 (293)
Q Consensus 142 L~i~~I~~DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m 221 (293)
|.++.||.|.+|||+||++-+.+... ....+||+.+|..+..||+.|..-+.+ .+-.+||.+|
T Consensus 110 l~~~vvp~DNSCLF~ai~yv~~k~~~----~~~~elR~iiA~~Vasnp~~yn~AiLg-------------K~n~eYc~WI 172 (307)
T KOG3288|consen 110 LSRRVVPDDNSCLFTAIAYVIFKQVS----NRPYELREIIAQEVASNPDKYNDAILG-------------KPNKEYCAWI 172 (307)
T ss_pred eEEEeccCCcchhhhhhhhhhcCccC----CCcHHHHHHHHHHHhcChhhhhHHHhC-------------CCcHHHHHHH
Confidence 67788999999999999999987532 334799999999999999999755543 3568999999
Q ss_pred hcCCCcCcHHHHHHHHHhhcCcEEEEECCCCce-EeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 022689 222 ESTAAWGGELELRALTHCLRKHIMIYSGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 291 (293)
Q Consensus 222 ~~~~~WGG~lEL~AlA~~l~~~I~V~~~~~~~~-~~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~ 291 (293)
.+..+|||-|||..||+.|+|.|.|++.....+ .||++- .....+.|.|. |.|||++.
T Consensus 173 ~k~dsWGGaIElsILS~~ygveI~vvDiqt~rid~fged~------~~~~rv~llyd------GIHYD~l~ 231 (307)
T KOG3288|consen 173 LKMDSWGGAIELSILSDYYGVEICVVDIQTVRIDRFGEDK------NFDNRVLLLYD------GIHYDPLA 231 (307)
T ss_pred ccccccCceEEeeeehhhhceeEEEEecceeeehhcCCCC------CCCceEEEEec------ccccChhh
Confidence 999999999999999999999999998876544 466532 23567999998 89999873
No 5
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.68 E-value=5.4e-17 Score=147.72 Aligned_cols=102 Identities=24% Similarity=0.399 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHHH-hhcCCCcCcHHHHHHHHHhhcCcEEEEECCC
Q 022689 173 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSF 251 (293)
Q Consensus 173 ~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~-m~~~~~WGG~lEL~AlA~~l~~~I~V~~~~~ 251 (293)
....||..++.||+.|++.|.||+.+.+ ..+|++||.. |...+.-++++.|.|||.+|+++|.|+..++
T Consensus 138 iV~flRLlts~~l~~~~d~y~~fi~~~~----------~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~ 207 (244)
T PF10275_consen 138 IVIFLRLLTSAYLKSNSDEYEPFIDGLE----------YLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDR 207 (244)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSTT------------S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSS
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhhcccc----------cCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecC
Confidence 3568999999999999999999998643 2479999975 8888999999999999999999999999875
Q ss_pred C----ceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 022689 252 P----DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 292 (293)
Q Consensus 252 ~----~~~~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~p 292 (293)
. .+.. ..|.+ +.....+.|+|.|.. .|||.++|
T Consensus 208 ~~~~~~~~~-~~~~~-~~~~~~~~i~LLyrp------gHYdIly~ 244 (244)
T PF10275_consen 208 SVEGDEVNR-HEFPP-DNESQEPQITLLYRP------GHYDILYP 244 (244)
T ss_dssp SGCSTTSEE-EEES--SSTTSS-SEEEEEET------BEEEEEEE
T ss_pred CCCCCcccc-ccCCC-ccCCCCCEEEEEEcC------CccccccC
Confidence 4 1111 11211 012347889999985 69999987
No 6
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=4.6e-16 Score=137.42 Aligned_cols=143 Identities=20% Similarity=0.358 Sum_probs=105.6
Q ss_pred hHHHHHHhHhccCCCeeeecCCCCCchHHHHHHHHhhccC----------------------------------------
Q 022689 128 VEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSG---------------------------------------- 167 (293)
Q Consensus 128 ~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~qL~~~~~---------------------------------------- 167 (293)
+=..+|..+-+.. -.++.+.|||||||||++..+-..-.
T Consensus 51 iy~~KIq~Lsk~Y-~~iR~trgDGNCfyra~~~s~lE~ll~d~~~l~~fka~~~kt~~~L~~~gf~e~t~~dFh~~Fiev 129 (256)
T KOG3991|consen 51 IYTTKIQELSKKY-TVIRKTRGDGNCFYRAFAYSYLELLLLDRAELQKFKAAVEKTKETLVLLGFPEFTFEDFHDTFIEV 129 (256)
T ss_pred HHHHHHHHHHHHh-hhhheecCCCceehHHHHHHHHHHHHhchHHHHHHHHHHHhhhHHHHHcCCCccchhhHHHHHHHH
Confidence 4444555544444 35889999999999999987654210
Q ss_pred ------C--------------CCcchHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHHH-hhcCCC
Q 022689 168 ------G--------------ASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAA 226 (293)
Q Consensus 168 ------~--------------~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~-m~~~~~ 226 (293)
+ ....-+..||..++.+|+.|+|.|.|||..+ .++.+||.. ++.-..
T Consensus 130 le~v~~g~sv~~l~~~~ndq~ssdyiV~ylRLvtS~~ik~~adfy~pFI~e~------------~tV~~fC~~eVEPm~k 197 (256)
T KOG3991|consen 130 LEDVEGGTSVDELLKIFNDQSSSDYIVMYLRLVTSGFIKSNADFYQPFIDEG------------MTVKAFCTQEVEPMYK 197 (256)
T ss_pred HHHHcCCccHHHHHHHHhccchhHHHHHHHHHHHHHHHhhChhhhhccCCCC------------CcHHHHHHhhcchhhh
Confidence 0 0112357899999999999999999999763 479999997 665566
Q ss_pred cCcHHHHHHHHHhhcCcEEEEECCCCce-EeC-CCCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 022689 227 WGGELELRALTHCLRKHIMIYSGSFPDV-EMG-KEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 293 (293)
Q Consensus 227 WGG~lEL~AlA~~l~~~I~V~~~~~~~~-~~g-~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~p~ 293 (293)
-.|+++|.|||+++++.|.|...+...- ..+ ..|. ....|.|+|.|.. .|||.++|.
T Consensus 198 esdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp----e~s~P~I~LLYrp------GHYdilY~~ 256 (256)
T KOG3991|consen 198 ESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP----EASAPEIYLLYRP------GHYDILYKK 256 (256)
T ss_pred ccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc----cccCceEEEEecC------CccccccCC
Confidence 6999999999999999999988764322 122 2342 2357889999974 899999984
No 7
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.1e-13 Score=130.44 Aligned_cols=133 Identities=20% Similarity=0.245 Sum_probs=102.0
Q ss_pred HHHHhHhccCCCeeeecCCCCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccCccccchhhhhhh
Q 022689 131 EKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQ 210 (293)
Q Consensus 131 ~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~ 210 (293)
......+...|+.+..|..||+|+|||+++||++ ....|..+|+.+++++..+++.|..|++.
T Consensus 207 ~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~-----d~e~~~~~~~~~~dq~~~e~~~~~~~vt~------------ 269 (371)
T KOG2605|consen 207 ERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYG-----DDEQHDHNRRECVDQLKKERDFYEDYVTE------------ 269 (371)
T ss_pred HHHHHHHHHhhhhhhhcccCCchhhhccHHHhhc-----CHHHHHHHHHHHHHHHhhccccccccccc------------
Confidence 3444455778999999999999999999999999 36789999999999999999999988864
Q ss_pred hhhHHHHHHHhhcCCCcCcHHHHHHHHH---hhcCcEEEEECCCCceEe-CCCCCCCCCCCCCCeEEEEeccCCCCCCCc
Q 022689 211 VERFENYCKEVESTAAWGGELELRALTH---CLRKHIMIYSGSFPDVEM-GKEYSNGGSDSSGSSIILSYHRHAFGLGEH 286 (293)
Q Consensus 211 ~~~~~~Y~~~m~~~~~WGG~lEL~AlA~---~l~~~I~V~~~~~~~~~~-g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeH 286 (293)
+|.+|+..++..+.||.++|++|+|. ....|+.|.+...+.|+- .+.+. .....+++. |..-.|
T Consensus 270 --~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~n-----~~~~~h 337 (371)
T KOG2605|consen 270 --DFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIE-----ESVKMEKYN-----FWVEVH 337 (371)
T ss_pred --chhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccc-----cchhhhhhc-----ccchhh
Confidence 68999999999999999999999995 555666666666665542 22111 112223333 334689
Q ss_pred cccccc
Q 022689 287 YNSVIP 292 (293)
Q Consensus 287 YnSl~p 292 (293)
|+.+++
T Consensus 338 ~~~~~~ 343 (371)
T KOG2605|consen 338 YNTARH 343 (371)
T ss_pred hhhccc
Confidence 998875
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.3e-10 Score=104.72 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=92.0
Q ss_pred cCCCCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHHHhhcCCC
Q 022689 147 IKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAA 226 (293)
Q Consensus 147 I~~DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~ 226 (293)
..+|..|+|++++..++- ..+..||..++..+..|||.|.+.+.+- +.-.||.++..+..
T Consensus 117 ~~~d~srl~q~~~~~l~~-------asv~~lrE~vs~Ev~snPDl~n~~i~~~-------------~~i~y~~~i~k~d~ 176 (306)
T COG5539 117 GQDDNSRLFQAERYSLRD-------ASVAKLREVVSLEVLSNPDLYNPAILEI-------------DVIAYATWIVKPDS 176 (306)
T ss_pred CCCchHHHHHHHHhhhhh-------hhHHHHHHHHHHHHhhCccccchhhcCc-------------chHHHHHhhhcccc
Confidence 336889999999999975 2689999999999999999999998763 56799999999999
Q ss_pred cC-cHHHHHHHHHhhcCcEEEEECCCC-ceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 022689 227 WG-GELELRALTHCLRKHIMIYSGSFP-DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 291 (293)
Q Consensus 227 WG-G~lEL~AlA~~l~~~I~V~~~~~~-~~~~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~ 291 (293)
|| |.+|+.+||+.|++.|+|+..+.. ...+++. .....+.+.|. |.|||+..
T Consensus 177 ~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~-------~~~q~~~i~f~------g~hfD~~t 230 (306)
T COG5539 177 QGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSH-------PYVQRISILFT------GIHFDEET 230 (306)
T ss_pred CCCceEEEeEeccccceeeeeeecchhHHhhccCC-------hhhhhhhhhhc------ccccchhh
Confidence 99 999999999999999999998843 3334431 11345777887 78999763
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=89.66 E-value=0.65 Score=36.02 Aligned_cols=65 Identities=17% Similarity=0.406 Sum_probs=46.4
Q ss_pred cCCCCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHHHhh--cC
Q 022689 147 IKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVE--ST 224 (293)
Q Consensus 147 I~~DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~--~~ 224 (293)
|..|+|||.-||+.+|.. +...|... |..| ...+..||.+++ .+
T Consensus 3 ~sR~NNCLVVAis~~L~~--------T~e~l~~~----M~An----------------------~~~i~~y~~W~r~~~~ 48 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGV--------TLEKLDNL----MQAN----------------------VSTIKKYHTWLRKKRP 48 (104)
T ss_pred ccCCCCeEeehHHHHhcc--------hHHHHHHH----HHhh----------------------HHHHHHHHHHHhcCCC
Confidence 467999999999999975 23333332 2222 236889999875 56
Q ss_pred CCcCcHHHHHHHHHhhcCcEEEEE
Q 022689 225 AAWGGELELRALTHCLRKHIMIYS 248 (293)
Q Consensus 225 ~~WGG~lEL~AlA~~l~~~I~V~~ 248 (293)
.+|-+ ...+|+.|++.|.|--
T Consensus 49 STW~D---C~mFA~~LkVsm~vkV 69 (104)
T PF05415_consen 49 STWDD---CRMFADALKVSMQVKV 69 (104)
T ss_pred CcHHH---HHHHHHhheeEEEEEE
Confidence 78976 4579999999998844
No 10
>PF14282 FlxA: FlxA-like protein
Probab=77.09 E-value=12 Score=29.75 Aligned_cols=54 Identities=19% Similarity=0.339 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 022689 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60 (293)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~~El~~~ 60 (293)
.+.++.|+.+|..+.-...- +-..++.+.+.+..+|..|++.|...+.+.-..-
T Consensus 25 ~~Qi~~Lq~ql~~l~~~~~~-~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 25 QKQIKQLQEQLQELSQDSDL-DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHcccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788877777653111 2223356779999999999999998887766554
No 11
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=76.84 E-value=5.8 Score=34.43 Aligned_cols=45 Identities=38% Similarity=0.462 Sum_probs=38.2
Q ss_pred cchhHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHH
Q 022689 2 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 53 (293)
Q Consensus 2 ~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh 53 (293)
|+-+++|...|..+|..|.+... ++.++.++.++..|+.||.+.-
T Consensus 107 L~s~~~ei~~L~~kI~~L~~~in-------~~~k~~~n~~i~slk~EL~d~i 151 (181)
T PF04645_consen 107 LKSIKKEIEILRLKISSLQKEIN-------KNKKKDLNEEIESLKSELNDLI 151 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------hhhhhhhhhhHHHHHHHHHHHH
Confidence 45688999999999999998776 3667889999999999998764
No 12
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=69.56 E-value=3.5 Score=33.00 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=16.3
Q ss_pred ecCCCCCchHHHHHHHHhh
Q 022689 146 DIKPDGHCLYRAVEDQLAH 164 (293)
Q Consensus 146 ~I~~DGnCLFrAIa~qL~~ 164 (293)
.-|+||+|-+|+|+.-++.
T Consensus 3 sPP~DG~CG~H~i~aI~n~ 21 (108)
T PF05412_consen 3 SPPGDGSCGWHCIAAIMNH 21 (108)
T ss_pred CCCCCCchHHHHHHHHHHH
Confidence 3578999999999998875
No 13
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=65.29 E-value=13 Score=30.98 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 022689 8 EISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 55 (293)
Q Consensus 8 E~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~~ 55 (293)
|+-+|+++|..|--.. +.++..++.+...|..||..|++--..
T Consensus 26 ERaEmkarIa~LEGE~-----r~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 26 ERAEMKARIAFLEGER-----RGQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999996433 355688899999999999999865543
No 14
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=62.89 E-value=22 Score=26.83 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 022689 4 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 54 (293)
Q Consensus 4 rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~ 54 (293)
..+-|..+|++....|..+.. +.+|+.+..++..|-..|+.+..
T Consensus 28 hm~~e~~~L~~~~~~~d~s~~-------~~~R~~L~~~l~~lv~~mE~K~d 71 (79)
T PF06657_consen 28 HMKMEHQELQDEYKQMDPSLG-------RRKRRDLEQELEELVKRMEAKAD 71 (79)
T ss_pred HHHHHHHHHHHHHHhcccccC-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888877776655 58899999999999999988764
No 15
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=62.54 E-value=6.1 Score=29.97 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=42.0
Q ss_pred HHHHHhHhc-cCCCeeeecCCCCCchHH-HHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcc
Q 022689 130 DEKLEKKLG-PLGLTVNDIKPDGHCLYR-AVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSS 190 (293)
Q Consensus 130 ~~~l~~~L~-~~gL~i~~I~~DGnCLFr-AIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d 190 (293)
.+.|+.+|. .+.+...+|.|||+-+|- +|++.+.+.+. -..++.+-.-..+||.+|.-
T Consensus 3 ~e~Ik~ll~~~L~~e~v~V~Gdg~Hf~vi~Vs~~F~g~sr---vkrqq~vYApL~~~i~~~~I 62 (80)
T COG5007 3 NEEIKSLLENALPLEEVEVEGDGSHFQVIAVSEEFAGKSR---VKRQQLVYAPLMAYIADNEI 62 (80)
T ss_pred HHHHHHHHHhcCCccEEEEecCCceEEEEEehHhhcCccH---HHHHHHHHHHHHHHhhcCce
Confidence 345556554 567888999999998887 78888877532 34567777778888887644
No 16
>PRK09784 hypothetical protein; Provisional
Probab=58.90 E-value=5.1 Score=36.93 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.3
Q ss_pred HhccCCCeeeecCCCCCchHHHHHH
Q 022689 136 KLGPLGLTVNDIKPDGHCLYRAVED 160 (293)
Q Consensus 136 ~L~~~gL~i~~I~~DGnCLFrAIa~ 160 (293)
.-+..||.--+|.|||-||.|||.-
T Consensus 194 ~n~~~glkyapvdgdgycllrailv 218 (417)
T PRK09784 194 INKTYGLKYAPVDGDGYCLLRAILV 218 (417)
T ss_pred hhhhhCceecccCCCchhHHHHHHH
Confidence 3456799999999999999999954
No 17
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=57.97 E-value=18 Score=34.81 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=31.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHH
Q 022689 2 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 53 (293)
Q Consensus 2 ~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh 53 (293)
+.+||+..++|...++..+++++ .+-.+.+++|+.++++|.
T Consensus 41 I~~QkkrLk~L~~sLk~~~~~~~-----------~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 41 ISHQKKRLKELKKSLKRCKKSLS-----------AEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC-----------hhHHHHHHHHHHHHHHHH
Confidence 46889999999998888876644 255677788888888876
No 18
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.32 E-value=36 Score=29.55 Aligned_cols=54 Identities=37% Similarity=0.521 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhhccCChhH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 022689 7 KEISQLQNKETELKKAAAKGSKAE---QKAKKKQVEEEISRLSAKLREKHAKELASLG 61 (293)
Q Consensus 7 kE~k~Lq~~i~~~kk~~~k~~k~~---~Kk~~k~v~~e~~~le~el~~rh~~El~~~~ 61 (293)
+++-.+++++..++|++....++. .+...+...+|+++|..+|+. .+.|+..|.
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~-~~~~~~~Lk 181 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK-KEKEIEALK 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHH
Confidence 567778888888888875433311 123446778899999999988 566676665
No 19
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=50.39 E-value=40 Score=24.13 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=24.9
Q ss_pred hHHHHHHhHhccCCCeeeecCCCCCchHHHHHHHHhh
Q 022689 128 VEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH 164 (293)
Q Consensus 128 ~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~qL~~ 164 (293)
+|.++|..+---.+..++-+-+-|.|-| +|..|+..
T Consensus 2 IE~qai~AL~hL~~~ilfi~D~Se~CGy-sie~Q~~L 37 (58)
T PF06858_consen 2 IEMQAITALAHLADAILFIIDPSEQCGY-SIEEQLSL 37 (58)
T ss_dssp HHHHHHHGGGGT-SEEEEEE-TT-TTSS--HHHHHHH
T ss_pred hhHHHHHHHHhhcceEEEEEcCCCCCCC-CHHHHHHH
Confidence 5777777655556667788889999999 89999965
No 20
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.24 E-value=12 Score=30.40 Aligned_cols=54 Identities=22% Similarity=0.440 Sum_probs=32.9
Q ss_pred hHHHHHHHHhhccCCCCcchHHHHHHHHHHHHh--------cCcccccccccCccccchhhhhhhhhhHHHHHHHhhc--
Q 022689 154 LYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMR--------DHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVES-- 223 (293)
Q Consensus 154 LFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~--------~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~-- 223 (293)
||+.|..+-.+. ..++|.+-=.|++ -||+...+|| .+|+.||..+.+
T Consensus 15 LYkriLrlHr~l--------p~~~R~lGD~YVkdEFrrHk~vnp~~~~~Fl---------------teW~~Ya~~l~qql 71 (125)
T KOG4100|consen 15 LYKRILRLHRGL--------PAELRALGDQYVKDEFRRHKTVNPLEAQGFL---------------TEWERYAVALSQQL 71 (125)
T ss_pred HHHHHHHHHccC--------ChHHHHHHHHHHHHHHHHhccCChHHHHHHH---------------HHHHHHHHHHHHHh
Confidence 777776655543 2355555444443 2455555665 369999998765
Q ss_pred --CCCcCcH
Q 022689 224 --TAAWGGE 230 (293)
Q Consensus 224 --~~~WGG~ 230 (293)
.|.|-|.
T Consensus 72 ~~~g~~K~~ 80 (125)
T KOG4100|consen 72 SSAGKWKGE 80 (125)
T ss_pred hhcCccccc
Confidence 5777553
No 21
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=44.90 E-value=4.8 Score=39.24 Aligned_cols=130 Identities=11% Similarity=-0.003 Sum_probs=86.3
Q ss_pred CCCeeeecCCCCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHH
Q 022689 140 LGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK 219 (293)
Q Consensus 140 ~gL~i~~I~~DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~ 219 (293)
.+..++...-|+.|.++.+.+++... +.-...=+..++-|...+.+.|.+ ..+ ..+.-|+-
T Consensus 53 ~~~~r~~~v~~~~~~~~~~~d~~~~~-----e~~e~~~~~~~v~~~~~~~~~~~~---~~~-----------~~~~~~~~ 113 (371)
T KOG2605|consen 53 YNNKRYGEVDRDFMIARGHQDEVLTV-----EDAEMAAICQSVLFKVLYQERFKL---PSD-----------TPCNGENS 113 (371)
T ss_pred ccCccccchhhhhhhhcccccccccc-----cHHHHhhHHhhhhhhhhhhhcccC---CCC-----------CcccccCC
Confidence 34556666779999999999999874 445666777888888888888875 211 25677888
Q ss_pred HhhcCCCcCcHHHHHHHHHhhcCcEEEEECCCCceEeCCCCCCCCCCCCCCeEEEEec---cCCCCCCCccccccc
Q 022689 220 EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYH---RHAFGLGEHYNSVIP 292 (293)
Q Consensus 220 ~m~~~~~WGG~lEL~AlA~~l~~~I~V~~~~~~~~~~g~e~~~~~~~~~~~~i~L~Y~---~~~y~lGeHYnSl~p 292 (293)
.|...++|-|...+.|.+.-....+...-.-++.|. |..+.. .....+.+.+|+ .-.+..|+++|...|
T Consensus 114 ~~~~~~~~~g~~~~~a~s~~~~~~~~~~~~~~~~~~-~~~~sd---~~~~~~~~~~~~~~~~~~~~~g~~in~y~~ 185 (371)
T KOG2605|consen 114 PMCSFHSRRGNESFQAASFGGLEIDLEVERNSPEWL-GQSPSD---PLRSVPSMEAIHARHPEAKEVGVRINDYNP 185 (371)
T ss_pred CCCcccccccccccccccccccccchhhhccCchhc-cccccc---cccccccccchhhccccchhhcccccCCCc
Confidence 888999999999988887766555544444444442 222221 112345666666 344556777766544
No 22
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=44.19 E-value=94 Score=26.47 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022689 5 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 58 (293)
Q Consensus 5 HrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~~El~ 58 (293)
-.++.++|+.+|.++|+....-+-++.=.|=-.++.++.+|+.||++..+.-..
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999987753332222222233677788888888876654444
No 23
>PRK11913 phhA phenylalanine 4-monooxygenase; Reviewed
Probab=43.36 E-value=39 Score=31.63 Aligned_cols=108 Identities=9% Similarity=0.094 Sum_probs=63.3
Q ss_pred HhcccCCCchHHHHHHhHhcc-CCCeeeecCC--CCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccc
Q 022689 119 QSNIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPF 195 (293)
Q Consensus 119 ~~~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pf 195 (293)
.-+.+.++.-..+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+. ++.|||.+.+.+ |
T Consensus 60 ~L~l~~d~IPql~~in~~L~~~TGw~~~pV~Glip~~~Ff~~LA~r~Fp----------------~t~~IR~~~~~~--Y 121 (275)
T PRK11913 60 ALGLPKDRIPQLDEINRVLQAATGWQVVPVPGLIPFDVFFELLANRRFP----------------VATFIRRPEELD--Y 121 (275)
T ss_pred HcCCCCCCCCCHHHHHHHHHhhcCCEEEecCccCCHHHHHHHHhcCccc----------------eeeeecCccccC--C
Confidence 345566677777889999997 8999999998 777888888776654 345666654411 1
Q ss_pred ccCccc-cch--hhhhhhhhhHHHHHHHhhcCCCcCcHHHHH-HHHHhhcCcE
Q 022689 196 YLSENM-IGE--ESAQSQVERFENYCKEVESTAAWGGELELR-ALTHCLRKHI 244 (293)
Q Consensus 196 l~~~~~-~~~--~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~-AlA~~l~~~I 244 (293)
+..+|. -+. ..-......|.+|...+-.-+.=+...... .||++|=-.|
T Consensus 122 tpEPDifHevfGHvPmL~~p~FAdf~q~~G~~~l~a~~~~~~~~LarlyWfTV 174 (275)
T PRK11913 122 LQEPDIFHDVFGHVPLLTNPVFADFMQAYGKLGLRASKEGRLEFLARLYWFTV 174 (275)
T ss_pred CCCCchHHHHhccchhhcCHHHHHHHHHHHHHHhCcChhhHHHHHhhheeeee
Confidence 111110 000 000011346888888765443333334444 7888774444
No 24
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=43.29 E-value=31 Score=31.25 Aligned_cols=109 Identities=12% Similarity=0.123 Sum_probs=63.6
Q ss_pred HhcccCCCchHHHHHHhHhcc-CCCeeeecCC--CCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccc
Q 022689 119 QSNIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPF 195 (293)
Q Consensus 119 ~~~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pf 195 (293)
.-+.+.++.-..+.|.+.|.+ -|+.++.|+| ...=+|..+|+..+- ++.|||.+.+.. |
T Consensus 38 ~l~l~~d~IPql~~in~~L~~~TGw~~~pV~gli~~~~Ff~~LA~r~Fp----------------~t~~iR~~~~~~--Y 99 (221)
T cd00361 38 LLGLPEDRIPQLEDVSEFLKALTGWTLVPVAGLISPRDFFALLAFRVFP----------------VTQYIRHPEEPD--Y 99 (221)
T ss_pred HcCCCCCCCCCHHHHHHHHHhhcCCEEEecCCcCCHHHHHHHHhcCCCc----------------eeeeecCcCCCC--C
Confidence 334566677777789999998 8999999998 777788887775543 344566543321 1
Q ss_pred ccCccc-cch--hhhhhhhhhHHHHHHHhhcCCCcCcH-HHHHHHHHhhcCcEE
Q 022689 196 YLSENM-IGE--ESAQSQVERFENYCKEVESTAAWGGE-LELRALTHCLRKHIM 245 (293)
Q Consensus 196 l~~~~~-~~~--~~~~~~~~~~~~Y~~~m~~~~~WGG~-lEL~AlA~~l~~~I~ 245 (293)
+..+|. -+. ..-......|.+|...+-.-+.=... -++..||++|=-.|+
T Consensus 100 tpEPDifHe~~GH~P~L~~p~fAdf~q~~G~~~l~a~~~~~~~~LarlyWfTVE 153 (221)
T cd00361 100 TPEPDIFHELFGHVPLLADPSFADFSQEYGLASLGASDLEEIEKLARLYWFTVE 153 (221)
T ss_pred CCCChhHHHHhccchhhcCHHHHHHHHHHHHHHhCcCCHHHHHHHHHhhhhhcc
Confidence 111110 000 00001134688888876543333344 567788888754443
No 25
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=42.97 E-value=91 Score=24.27 Aligned_cols=45 Identities=38% Similarity=0.482 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHH
Q 022689 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 52 (293)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~r 52 (293)
+.+++.+...|..++++. .+..+-+..-+++.+++..+|.++.+-
T Consensus 49 r~~rN~~sk~I~~~~~~~--~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 49 RAERNELSKEIGKLKKAG--EDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHCHTT--CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555432 233334455577888888888776653
No 26
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=41.27 E-value=1.4e+02 Score=31.55 Aligned_cols=14 Identities=7% Similarity=0.161 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHh
Q 022689 173 NFQQLRQMVAAYMR 186 (293)
Q Consensus 173 ~~~~LR~~~a~yi~ 186 (293)
.|..+|...-..+.
T Consensus 418 ~~~~~rsqld~Lf~ 431 (811)
T KOG4364|consen 418 HWGMRRSQLDELFP 431 (811)
T ss_pred cchhhhhhhhhhcc
Confidence 45666666555544
No 27
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=40.98 E-value=49 Score=30.00 Aligned_cols=55 Identities=16% Similarity=0.378 Sum_probs=38.1
Q ss_pred CcCcHH----HHHHHHHhhcCcEEEEECCCCc-eEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 022689 226 AWGGEL----ELRALTHCLRKHIMIYSGSFPD-VEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 292 (293)
Q Consensus 226 ~WGG~l----EL~AlA~~l~~~I~V~~~~~~~-~~~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~p 292 (293)
.||+.- .+..+|+.+++|+.++..+--. +..|.+ ..+|.++.+... |.+|+|..|
T Consensus 5 ~wg~~~~~~~~~~~~a~~~~i~~~~~E~G~lR~~~~~~~--------~~~P~s~~~D~~----Gv~~~s~~~ 64 (269)
T PF05159_consen 5 VWGDKRPYHRAAIEVAKELGIPVIFFEDGFLRSIGLGSD--------GYPPDSLTIDPQ----GVNADSSLP 64 (269)
T ss_pred EECCCccHHHHHHHHHHHhCCCEEEEecCcccccccccc--------CCCCeEEEECCC----CccCCCCCc
Confidence 588763 3456789999999999877422 223221 256788888775 899998766
No 28
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=40.54 E-value=57 Score=23.82 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=30.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHH
Q 022689 2 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 49 (293)
Q Consensus 2 ~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el 49 (293)
+.||...++++..++..+.+.-+..+ +.-+.++.++.+++..+
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~~~~~e-----~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKRDAANE-----KDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 46888889999888888887766322 23467777777777654
No 29
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=40.12 E-value=57 Score=31.15 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 022689 5 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 54 (293)
Q Consensus 5 HrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~ 54 (293)
.-|.+.+|+.+|..|++.... ..-.+.+||.+||..+.+...
T Consensus 8 fe~~i~~l~~~~~~l~~~~~~--------~~~~~~~~~~~l~~~~~~~~~ 49 (316)
T TIGR00513 8 FEKPIAELEAKIESLRARSRD--------EDVDLSEEIERLEKRSVELTK 49 (316)
T ss_pred hhHHHHHHHHHHHHHHhhhhc--------ccccHHHHHHHHHHHHHHHHH
Confidence 347789999999999986552 234788999999998776544
No 30
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=38.38 E-value=58 Score=31.15 Aligned_cols=41 Identities=37% Similarity=0.478 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 022689 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 54 (293)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~ 54 (293)
-|.+.+|+.+|..|++.+.. ..-.+.+||.+||..+++-.+
T Consensus 9 e~~i~~l~~~i~~l~~~~~~--------~~~~~~~~~~~l~~~~~~~~~ 49 (319)
T PRK05724 9 EKPIAELEAKIEELRAVAED--------SDVDLSEEIERLEKKLEELTK 49 (319)
T ss_pred hhHHHHHHHHHHHHHhhhcc--------ccccHHHHHHHHHHHHHHHHH
Confidence 46789999999999986552 224789999999998776543
No 31
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=37.21 E-value=95 Score=26.39 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHcc
Q 022689 8 EISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR---EKHAKELASLG 61 (293)
Q Consensus 8 E~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~---~rh~~El~~~~ 61 (293)
++++...+|..||+++. -=-++..+|+.|+.+.+ +.|+.+|+.+.
T Consensus 35 ql~~~d~~i~~Lk~~~~---------d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 35 QLKEADKQIKDLKKSAK---------DNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHhccC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666665332 12478888888887665 57777777654
No 32
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=36.44 E-value=56 Score=30.80 Aligned_cols=106 Identities=13% Similarity=0.210 Sum_probs=63.4
Q ss_pred ccCCCchHHHHHHhHhcc-CCCeeeecCC--CCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccC
Q 022689 122 IVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLS 198 (293)
Q Consensus 122 ~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~ 198 (293)
...++.-..+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+. ++.|||.+.+-+ |+..
T Consensus 101 l~~d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~r~Fp----------------~t~~IR~~~~~~--YtpE 162 (287)
T cd03346 101 YREDNIPQLEDVSRFLKERTGFTIRPVAGYLSPRDFLAGLAFRVFH----------------CTQYVRHSSDPF--YTPE 162 (287)
T ss_pred CCcCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCccc----------------ceeeecCccccC--CCCC
Confidence 455677777789999987 5999999998 777788888876664 245666654321 1111
Q ss_pred ccc-cch--hhhhhhhhhHHHHHHHhhcCCCcCcHHHHHHHHHhhcCcEE
Q 022689 199 ENM-IGE--ESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIM 245 (293)
Q Consensus 199 ~~~-~~~--~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~AlA~~l~~~I~ 245 (293)
++. -+. ..-......|.+|...+-.-+.=+..-++.-||++|=-.|+
T Consensus 163 PDifHEl~GHvPlLadp~FA~f~q~~G~~~l~a~~~~i~~LarlYWfTVE 212 (287)
T cd03346 163 PDTCHELLGHVPLLADPSFAQFSQEIGLASLGASDEDIQKLATCYFFTVE 212 (287)
T ss_pred CchHHHHhccchhhcCHHHHHHHHHHHHHhcCCCHHHHHHHhHhhhhhcc
Confidence 110 000 00001134688888875432222355677778888755554
No 33
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=35.89 E-value=1.7e+02 Score=27.85 Aligned_cols=105 Identities=11% Similarity=0.141 Sum_probs=61.7
Q ss_pred cccCCCchHHHHHHhHhcc-CCCeeeecCC--CCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccc
Q 022689 121 NIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL 197 (293)
Q Consensus 121 ~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~ 197 (293)
+...++.-..+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+. ++.|||.+.+.+ |+.
T Consensus 99 gl~~d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~R~Fp----------------~t~yIR~~~~~~--Ytp 160 (298)
T cd03345 99 GYSEDRIPQLEDVSEFLKERTGFQLRPVAGLLSARDFLASLAFRVFQ----------------CTQYIRHASSPM--HSP 160 (298)
T ss_pred CCCCCCCCCHHHHHHHHHhccCCEEEecCccCCHHHHHHHHhcCccc----------------ccceecCCcccC--CCC
Confidence 4455676677789999997 8999999998 777788888776654 235666654421 111
Q ss_pred Cccc-cch--hhhhhhhhhHHHHHHHhhcCCCcCcHHHHHHHHHhhcCc
Q 022689 198 SENM-IGE--ESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKH 243 (293)
Q Consensus 198 ~~~~-~~~--~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~AlA~~l~~~ 243 (293)
.++. -+. ..-......|.+|...+-.-+-=+..-+|.-||++|=-.
T Consensus 161 EPDi~HEl~GHvPlLadp~FA~f~q~~G~~~l~a~~~~i~~LarlYWfT 209 (298)
T cd03345 161 EPDCCHELLGHVPMLADPTFAQFSQDIGLASLGASDEEIEKLSTLYWFT 209 (298)
T ss_pred CCchHHHHhccchhhCCHHHHHHHHHHHHHhcCCCHHHHHHHhHhhhhh
Confidence 1110 000 000011346888888754333223555667788877433
No 34
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=35.57 E-value=72 Score=31.75 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHH
Q 022689 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 54 (293)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~ 54 (293)
-|.+.+|+.+|..|++.+.. ..-.+.+||.+||..+.+-.+
T Consensus 79 e~pi~ele~ki~el~~~~~~--------~~~~~~~ei~~l~~~~~~~~~ 119 (431)
T PLN03230 79 EKPIVDLENRIDEVRELANK--------TGVDFSAQIAELEERYDQVRR 119 (431)
T ss_pred hhHHHHHHHHHHHHHhhhhc--------ccccHHHHHHHHHHHHHHHHH
Confidence 46789999999999986652 235789999999998766544
No 35
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=34.58 E-value=44 Score=34.17 Aligned_cols=44 Identities=30% Similarity=0.345 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 022689 7 KEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 55 (293)
Q Consensus 7 kE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~~ 55 (293)
-|+-+||++|..|. |+.+.++--|+.+..++..||-.|++.|+.
T Consensus 41 lERaElqariAfLq-----gErk~qenlk~dl~rR~kmlE~~lkeerak 84 (577)
T KOG0642|consen 41 LERAELQARIAFLQ-----GERKGQENLKMDLVRRIKMLEFALKEERAK 84 (577)
T ss_pred hhhhhHHHHHHHHh-----cchhhhHHHHHHHHHHHhcccchhHHhhhh
Confidence 47889999999995 444455677889999999999999998864
No 36
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=34.13 E-value=79 Score=30.33 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 022689 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 55 (293)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~~ 55 (293)
-|.+.+|+.+|..|++.... ..-.+.+||.+||..+.+...+
T Consensus 12 e~~i~el~~~i~~l~~~~~~--------~~~~~~~~i~~l~~~~~~~~~~ 53 (322)
T CHL00198 12 MKPLAELESQVEELSKLAPK--------NDKVINNKLKSFQRKLRILKKE 53 (322)
T ss_pred hhhHHHHHHHHHHHHhhhcc--------cccCHHHHHHHHHHHHHHHHHH
Confidence 47789999999999986542 1247899999999988776544
No 37
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=32.93 E-value=1.2e+02 Score=22.94 Aligned_cols=20 Identities=45% Similarity=0.639 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 022689 33 AKKKQVEEEISRLSAKLREK 52 (293)
Q Consensus 33 k~~k~v~~e~~~le~el~~r 52 (293)
|-|..-.+||++|-.+|+.|
T Consensus 57 kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 57 KMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44455566666666665544
No 38
>cd03348 pro_PheOH Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH). PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor.
Probab=31.71 E-value=68 Score=29.23 Aligned_cols=108 Identities=9% Similarity=0.113 Sum_probs=60.5
Q ss_pred HhcccCCCchHHHHHHhHhcc-CCCeeeecCC--CCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccc
Q 022689 119 QSNIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPF 195 (293)
Q Consensus 119 ~~~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pf 195 (293)
.-+.+.++.-..+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+. ++.|||.+.+.+ |
T Consensus 44 ~L~l~~d~IPql~~vn~~L~~~TGw~~~pV~Glip~~~Ff~~LA~r~Fp----------------~t~~iR~~~~~~--Y 105 (228)
T cd03348 44 KLGLPTDRIPDFADVSERLKAATGWTVVAVPGLIPDDEFFEHLANRRFP----------------VTNFIRRPEELD--Y 105 (228)
T ss_pred HcCCCCCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCCCc----------------eeeeecCccccC--C
Confidence 334566666677789999988 8999999997 677777777765543 344566654311 1
Q ss_pred ccCccc-cch--hhhhhhhhhHHHHHHHhhcCCCcCcH-HHHHHHHHhhcCcE
Q 022689 196 YLSENM-IGE--ESAQSQVERFENYCKEVESTAAWGGE-LELRALTHCLRKHI 244 (293)
Q Consensus 196 l~~~~~-~~~--~~~~~~~~~~~~Y~~~m~~~~~WGG~-lEL~AlA~~l~~~I 244 (293)
+..+|. -+. ..-......|.+|...+-.-+.=... -++.-||++|=-.|
T Consensus 106 tpEPDifHe~fGHvPmL~~p~fAdf~q~~G~~~l~a~~~~~~~~LarlyWfTV 158 (228)
T cd03348 106 LQEPDIFHDIFGHVPMLTNPVFADFMQAYGKGGLKATGLEDRALLARLYWYTV 158 (228)
T ss_pred CCCcHHHHHHhcccHhhcCHHHHHHHHHHHHHHhCCCCHHHHHHHhHhhhhhc
Confidence 111110 000 00001134688888775433322333 45666888774444
No 39
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=31.26 E-value=1.1e+02 Score=30.05 Aligned_cols=44 Identities=25% Similarity=0.490 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHH
Q 022689 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 51 (293)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~ 51 (293)
.+++.+|+.+|..+.....+..| .+++.++++++++.++.++.+
T Consensus 248 ~~~~~~~~~~i~~l~~~l~~~~k--~~~k~~~~~~q~~~~~k~~~~ 291 (406)
T PF02388_consen 248 QEKLEKLEKEIEKLEEKLEKNPK--KKNKLKELEEQLASLEKRIEE 291 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHHHHH
Confidence 35566777777777765433332 256778888999988887765
No 40
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=31.12 E-value=73 Score=30.23 Aligned_cols=46 Identities=33% Similarity=0.425 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022689 5 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 58 (293)
Q Consensus 5 HrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~~El~ 58 (293)
+-|...+|+++|..+++.+.. ..-.+.+||.+||..+.+--..--.
T Consensus 7 fEkpi~ele~kI~~l~~~~~~--------~~~~~~~eI~~Le~~~~~~~~~iy~ 52 (317)
T COG0825 7 FEKPIAELEAKIDELKALAEE--------NDVDLSDEIERLEKRLAELTKKIYS 52 (317)
T ss_pred hhhHHHHHHHHHHHHHhhccc--------cccchHHHHHHHHhhHHHHhhhhhc
Confidence 567899999999999988763 3358999999999887765544433
No 41
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase, monomeric form. This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase.
Probab=30.83 E-value=1e+02 Score=28.41 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=35.8
Q ss_pred HhcccCCCchHHHHHHhHhc-cCCCeeeecCC--CCCchHHHHHHHHhh
Q 022689 119 QSNIVSDRTVEDEKLEKKLG-PLGLTVNDIKP--DGHCLYRAVEDQLAH 164 (293)
Q Consensus 119 ~~~~~~~r~~E~~~l~~~L~-~~gL~i~~I~~--DGnCLFrAIa~qL~~ 164 (293)
.-+.+.++.-..+.|.+.|. .-|+.++.|+| ...=+|..+|+-.+.
T Consensus 44 ~lgl~~d~IPql~~vn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~r~Fp 92 (248)
T TIGR01267 44 QLGLPHDRIPDFDEINRKLQATTGWRIAAVPGLIPFQTFFEHLANRRFP 92 (248)
T ss_pred HcCCCCCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCccc
Confidence 34556667777778999998 78999999998 777888888776654
No 42
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=30.24 E-value=1.4e+02 Score=23.91 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCcEEEEECCCCceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccc
Q 022689 232 ELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNS 289 (293)
Q Consensus 232 EL~AlA~~l~~~I~V~~~~~~~~~~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnS 289 (293)
.+.|||..|+....|.+..+. +.+|-.- ....+.|.|.. |--.||..
T Consensus 48 hltaLa~~~~~~~~~hs~~~~-~~~Gi~~-------as~~~~I~ht~---G~p~HFs~ 94 (104)
T PF05381_consen 48 HLTALAYRYHFQCTFHSDHGV-LHYGIKD-------ASTVFTITHTP---GPPGHFSL 94 (104)
T ss_pred HHHHHHHHHheEEEEEcCCce-EEeecCC-------CceEEEEEeCC---CCCCcccc
Confidence 567999999999988876654 4577532 23455555443 33468865
No 43
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=29.84 E-value=1.9e+02 Score=20.86 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=32.3
Q ss_pred cchhHHHHHHHHHHHHHHHhhhccCCh---hHHhhhhHHHHHHHHHHHHHH
Q 022689 2 LSRHRKEISQLQNKETELKKAAAKGSK---AEQKAKKKQVEEEISRLSAKL 49 (293)
Q Consensus 2 ~~rHrkE~k~Lq~~i~~~kk~~~k~~k---~~~Kk~~k~v~~e~~~le~el 49 (293)
++|-|+|-+|+-+-|.+|--..+ |- +-=||||=.+.+++.+||..+
T Consensus 13 ~arLrqeH~D~DaaInAmi~~~c--D~L~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 13 LARLRQEHADFDAAINAMIATGC--DALRIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHHhhHHHHHHHHHHhCC--cHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 57889999999998887764221 21 112466778899999998754
No 44
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=29.58 E-value=79 Score=31.83 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=62.2
Q ss_pred ccCCCchHHHHHHhHhcc-CCCeeeecCC--CCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccC
Q 022689 122 IVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLS 198 (293)
Q Consensus 122 ~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~ 198 (293)
...++.-..+.|.+.|.+ -|+.++.|+| ...=+|..+|+..+. ++.|||.+.+.+ |+..
T Consensus 230 ~~~d~IPql~dvs~~L~~~TGw~~~pV~Gll~~r~F~~~LA~R~F~----------------~tqyIR~~~~~~--YtpE 291 (464)
T TIGR01270 230 YREDNIPQLEDVSKFLKAKTGFRLRPVAGYLSARDFLSGLAFRVFH----------------CTQYVRHSADPF--YTPE 291 (464)
T ss_pred CCccCCCCHHHHHHHHHhccCCEEEeccccCCHHHHHHHHhcCccc----------------eeeeeccccccC--cCCC
Confidence 344566666789999985 5999999998 777788888887765 244666654321 1111
Q ss_pred ccc-cchh--hhhhhhhhHHHHHHHhhcCCCcCcHHHHHHHHHhhcCcEE
Q 022689 199 ENM-IGEE--SAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIM 245 (293)
Q Consensus 199 ~~~-~~~~--~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~AlA~~l~~~I~ 245 (293)
++. -+.. .-......|.+|...+-.-+.=+..-+|.-||++|=-.|.
T Consensus 292 PDi~HEl~GHvPlLadp~FA~f~q~~G~~sl~a~~e~i~~LarlyWfTVE 341 (464)
T TIGR01270 292 PDTCHELLGHMPLLADPSFAQFSQEIGLASLGASEEDIKKLATLYFFTIE 341 (464)
T ss_pred CchHHHHhcccchhcCHHHHHHHHHHHHhhcCCCHHHHHHHhHhhhhhhh
Confidence 110 0000 0001134688888885433322255567778888755444
No 45
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.22 E-value=1.2e+02 Score=31.13 Aligned_cols=49 Identities=29% Similarity=0.308 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhhccCChhHHhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHcc
Q 022689 10 SQLQNKETELKKAAAKGSKAEQKAKKK-----QVEEEISRLSAKLREKHAKELASLG 61 (293)
Q Consensus 10 k~Lq~~i~~~kk~~~k~~k~~~Kk~~k-----~v~~e~~~le~el~~rh~~El~~~~ 61 (293)
++|+...++|+-+.-|-|+ |=+-. +-+++|..||+.|+.-|..++.+.-
T Consensus 362 ~dlkehassLas~glk~ds---~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~ 415 (654)
T KOG4809|consen 362 IDLKEHASSLASAGLKRDS---KLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARM 415 (654)
T ss_pred HHHHHHHHHHHHHhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 4455555555544444343 22222 2368999999999999999988753
No 46
>PRK10780 periplasmic chaperone; Provisional
Probab=28.49 E-value=2.9e+02 Score=23.35 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHc
Q 022689 44 RLSAKLREKHAKELASL 60 (293)
Q Consensus 44 ~le~el~~rh~~El~~~ 60 (293)
.++.+|..|..+++..+
T Consensus 105 ~~qq~~~~~~~e~~~~i 121 (165)
T PRK10780 105 AFEQDRRRRSNEERNKI 121 (165)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555543
No 47
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=26.99 E-value=1.4e+02 Score=22.64 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHH
Q 022689 7 KEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAK 48 (293)
Q Consensus 7 kE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~e 48 (293)
++.++||..+..|---+ -.|..||.+|+.|
T Consensus 23 ~ei~~LQ~sL~~L~~Rv------------e~Vk~E~~kL~~E 52 (80)
T PF10224_consen 23 QEILELQDSLEALSDRV------------EEVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 45555665555554322 3677788877654
No 48
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=26.96 E-value=47 Score=25.82 Aligned_cols=31 Identities=39% Similarity=0.634 Sum_probs=24.2
Q ss_pred CchHHHHHHhHhccCCCeeeecCCCC-CchHHHHHHHHh
Q 022689 126 RTVEDEKLEKKLGPLGLTVNDIKPDG-HCLYRAVEDQLA 163 (293)
Q Consensus 126 r~~E~~~l~~~L~~~gL~i~~I~~DG-nCLFrAIa~qL~ 163 (293)
|..=.+.|...|...|+ || .|+-|||-..-.
T Consensus 6 R~~lY~~lE~~l~~~G~-------~g~~ClLR~ICE~a~ 37 (95)
T smart00718 6 RRLLYEALENLLDQLGF-------NGRACLLRAICESAQ 37 (95)
T ss_pred HHHHHHHHHHHHHHcCC-------CchhhHHHHHHHccc
Confidence 44456778888888886 77 999999987654
No 49
>cd03347 eu_PheOH Eukaryotic phenylalanine-4-hydroxylase (eu_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic phenylalanine-4-hydroxylase (pro_PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH catalyzes the first and rate-limiting step in the metabolism of the amino acid L-phenylalanine (L-Phe), the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. The catalytic activity of the tetrameric enzyme is tightly regulated by the binding of L-Phe and BH4 as well as by phosphorylation. Mutations in the human enzyme are linked to a severe variant of phenylketonuria.
Probab=26.86 E-value=97 Score=29.50 Aligned_cols=108 Identities=10% Similarity=0.126 Sum_probs=61.9
Q ss_pred hcccCCCchHHHHHHhHhcc-CCCeeeecCC--CCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccc
Q 022689 120 SNIVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFY 196 (293)
Q Consensus 120 ~~~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl 196 (293)
-+...++.-..+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+. ++.|||.+.+-+ |+
T Consensus 99 ~gl~~d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~R~Fp----------------~t~yIR~~~~~~--Yt 160 (306)
T cd03347 99 CGFSEDNIPQLEDVSNFLQTCTGFRLRPVAGLLSSRDFLAGLAFRVFH----------------STQYIRHPSKPM--YT 160 (306)
T ss_pred cCCCcCCCCCHHHHHHHHHhccCCEEEecCccCCHHHHHHHHhcCccc----------------eeeeecCccccC--CC
Confidence 34455666677789999998 6999999998 677778888776654 245666654321 11
Q ss_pred cCccc-cchh--hhhhhhhhHHHHHHHhhcCCCcCcHHHHHHHHHhhcCcEE
Q 022689 197 LSENM-IGEE--SAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIM 245 (293)
Q Consensus 197 ~~~~~-~~~~--~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~AlA~~l~~~I~ 245 (293)
..+|. -+.. .-......|.+|...+-.-+.=+..-++.-||++|=-.|+
T Consensus 161 pEPDifHEl~GHvPlLadp~FA~f~q~~G~~~l~a~~~~i~~LarlYWfTVE 212 (306)
T cd03347 161 PEPDICHELLGHVPLFADPSFAQFSQEIGLASLGAPDEYIEKLATVYWFTVE 212 (306)
T ss_pred CCCchHHHHhccchhhcCHHHHHHHHHHHHHhcCCCHHHHHHHhhheeeeec
Confidence 11110 0000 0001134688888875433322234456678887754444
No 50
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=26.21 E-value=7.5 Score=32.90 Aligned_cols=39 Identities=36% Similarity=0.461 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHH
Q 022689 5 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 51 (293)
Q Consensus 5 HrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~ 51 (293)
+-+.+++|+.+|..|++.+. ...-.+.++|++||..+..
T Consensus 5 fEk~I~ele~kI~eL~~~~~--------~~~~d~~~ei~~Le~k~~~ 43 (145)
T PF03255_consen 5 FEKPIKELEEKIEELKKLAE--------EGGIDLSDEIASLEEKLEK 43 (145)
T ss_dssp CCHHHHHCCCCCC----------------------TCHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHHh--------hcCCCHHHHHHHHHHHHHH
Confidence 45778999999999987766 2334788899999988765
No 51
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=25.78 E-value=3.5e+02 Score=22.66 Aligned_cols=105 Identities=23% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCC-CCCcchhhhhhhcccccccccCCCCCccc
Q 022689 19 LKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGN-EKSNLDNLVKAVAGVTVISQHDQAKPSKG 97 (293)
Q Consensus 19 ~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~~El~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 97 (293)
+.|-++ |...|+...+.++.+.+-..+-+-.-..|.+....+. +.+++|.-.........++. ..=.+|+
T Consensus 34 ~~kl~~-------k~~~kq~eke~ae~e~~~~~~ak~s~n~lRg~~~~~~~~~ed~d~Ee~~~~~~~~s~~--~~WGkka 104 (140)
T PF07543_consen 34 FRKLAA-------KDQKKQLEKEKAEREAEKAEKAKISPNALRGGKAKESGEVEDTDDEEDEEDFAEASGV--FGWGKKA 104 (140)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHhccccccCCchhhcccccccCCCcCCccchhhhhccccccCC--ccccHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHhHhc
Q 022689 98 TKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLG 138 (293)
Q Consensus 98 ~~r~~~r~~~~~~~~~~i~~e~~~~~~~r~~E~~~l~~~L~ 138 (293)
|+|+++-+.+-.+.+++.+++ .-..+.+-|..+|.
T Consensus 105 RrRqkk~~k~l~~~~e~~~~~------~~~~dD~DI~dlLe 139 (140)
T PF07543_consen 105 RRRQKKQQKKLEEAEEQRREE------QEEDDDKDIEDLLE 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhc------cccccHHHHHHHhc
No 52
>PRK10963 hypothetical protein; Provisional
Probab=25.76 E-value=55 Score=29.38 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.6
Q ss_pred HHHHHHHhcCcccccc
Q 022689 179 QMVAAYMRDHSSDFLP 194 (293)
Q Consensus 179 ~~~a~yi~~n~d~F~p 194 (293)
..|++|+++|||.|..
T Consensus 6 ~~V~~yL~~~PdFf~~ 21 (223)
T PRK10963 6 RAVVDYLLQNPDFFIR 21 (223)
T ss_pred HHHHHHHHHCchHHhh
Confidence 4689999999999864
No 53
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=24.30 E-value=1e+02 Score=20.37 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=21.7
Q ss_pred HHHHHhhcCCCcCcHHHHHHHHHhhcCcE
Q 022689 216 NYCKEVESTAAWGGELELRALTHCLRKHI 244 (293)
Q Consensus 216 ~Y~~~m~~~~~WGG~lEL~AlA~~l~~~I 244 (293)
.++.++.+...+=+--.+.++|++|++++
T Consensus 24 ~~i~~~~~g~~~~~~~~~~~ia~~l~~~~ 52 (55)
T PF01381_consen 24 STISRIENGKRNPSLDTLKKIAKALGVSP 52 (55)
T ss_dssp HHHHHHHTTSSTSBHHHHHHHHHHHTSEH
T ss_pred chhHHHhcCCCCCCHHHHHHHHHHHCCCH
Confidence 45555555566667788999999999986
No 54
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=23.53 E-value=69 Score=21.13 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=23.9
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccc
Q 022689 155 YRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDF 192 (293)
Q Consensus 155 FrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F 192 (293)
|+++..-|..-.. ...+..+|...++..+..|+|-.
T Consensus 4 Y~~FL~il~~y~~--~~~~~~~v~~~v~~Ll~~hpdLl 39 (47)
T PF02671_consen 4 YNEFLKILNDYKK--GRISRSEVIEEVSELLRGHPDLL 39 (47)
T ss_dssp HHHHHHHHHHHHC--TCSCHHHHHHHHHHHTTT-HHHH
T ss_pred HHHHHHHHHHHHh--cCCCHHHHHHHHHHHHccCHHHH
Confidence 4555555543222 24678899999999999999853
No 55
>PF04874 Mak16: Mak16 protein C-terminal region; InterPro: IPR006958 The function of these proteins is unknown. The yeast orthologues have been implicated in cell cycle progression and biogenesis of 60S ribosomal subunits. The Schistosoma mansoni (Blood fluke) Mak16 has been shown to target protein transport to the nucleolus [].
Probab=22.81 E-value=1.5e+02 Score=23.54 Aligned_cols=32 Identities=34% Similarity=0.597 Sum_probs=17.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHHHh
Q 022689 95 SKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEK 135 (293)
Q Consensus 95 ~k~~~r~~~r~~~~~~~~~~i~~e~~~~~~~r~~E~~~l~~ 135 (293)
+|+..||++++.+.+...+++. ..||.+.|.+
T Consensus 2 ~kK~eRRE~~RE~KAl~AA~le---------~~IEkELLeR 33 (101)
T PF04874_consen 2 KKKVERREKRREEKALIAAKLE---------KSIEKELLER 33 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 4666666666555554444333 3456655544
No 56
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=22.62 E-value=1.3e+02 Score=30.20 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=60.0
Q ss_pred ccCCCchHHHHHHhHhcc-CCCeeeecCC--CCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccC
Q 022689 122 IVSDRTVEDEKLEKKLGP-LGLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLS 198 (293)
Q Consensus 122 ~~~~r~~E~~~l~~~L~~-~gL~i~~I~~--DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~ 198 (293)
...++.-..+.|.+.|.+ -|+.++.|+| ...=+|..+|+-.+. ++.|||.+.+.+ |+..
T Consensus 224 l~~d~IPqL~dvs~~L~~~TGw~l~pV~GLl~~rdF~~~LA~RvFp----------------~TqyIR~~~~~~--YtpE 285 (457)
T TIGR01269 224 YNSESIPQLQTISEFLHRTTGFRLRPVAGLLSARDFLASLAFRVFQ----------------CTQYIRHHSSPM--HTPE 285 (457)
T ss_pred CCcCCCCCHHHHHHHHHhccCCEEEeccccCCHHHHHHHHhcCccc----------------ceeeecCccccC--CCCC
Confidence 344566667789999998 5999999998 777888888887765 235666654321 1111
Q ss_pred ccc-cchh--hhhhhhhhHHHHHHHhhcCCCcCcHHHHHHHHHhhcCcE
Q 022689 199 ENM-IGEE--SAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHI 244 (293)
Q Consensus 199 ~~~-~~~~--~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~AlA~~l~~~I 244 (293)
+|. -+.. .-......|.+|...+-.-+.=+..-+|.-||++|=-.|
T Consensus 286 PDi~HEl~GHvPlLadp~FA~F~q~~G~asl~As~e~i~~LarlYWfTV 334 (457)
T TIGR01269 286 PDCIHELLGHMPMLADRQFAQFSQEIGLASLGASEEEIEKLSTLYWFTV 334 (457)
T ss_pred CchHHHHhcccccccCHHHHHHHHHHHHHhcCCCHHHHHHHhHhHhhhh
Confidence 110 0000 000113468888887543222224445666777764433
No 57
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=22.58 E-value=1.1e+02 Score=30.51 Aligned_cols=106 Identities=13% Similarity=0.146 Sum_probs=61.6
Q ss_pred ccCCCchHHHHHHhHhccC-CCeeeecCC--CCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccC
Q 022689 122 IVSDRTVEDEKLEKKLGPL-GLTVNDIKP--DGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLS 198 (293)
Q Consensus 122 ~~~~r~~E~~~l~~~L~~~-gL~i~~I~~--DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~ 198 (293)
...++.-..+.+.+.|.+. |+.++.|+| ...=+|..+|+-.+. ++.|||.+.+-+ |+..
T Consensus 203 ~~~d~IPql~dvs~~L~~~TGw~~~pV~Gll~~~~F~~~LA~r~F~----------------~t~yiR~~~~~~--YtpE 264 (436)
T TIGR01268 203 FREDNIPQLEDVSQFLQDCTGFTLRPVAGLLSSRDFLAGLAFRVFH----------------STQYIRHHSKPM--YTPE 264 (436)
T ss_pred CCccCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCccc----------------eeeeeccccccc--CCCC
Confidence 3455666677899999984 999999998 777788888877665 244566554311 1111
Q ss_pred ccc-cchh--hhhhhhhhHHHHHHHhhcCCCcCcHHHHHHHHHhhcCcEE
Q 022689 199 ENM-IGEE--SAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIM 245 (293)
Q Consensus 199 ~~~-~~~~--~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~AlA~~l~~~I~ 245 (293)
++. -+.. .-......|.+|...+-.-+.=+..-+|.-||++|=-.|+
T Consensus 265 PDi~Hel~GHvPlla~p~fA~f~q~~G~~~l~a~~~~i~~LarlyWfTVE 314 (436)
T TIGR01268 265 PDICHELLGHVPLFADVEFAQFSQEIGLASLGAPDDYIEKLATLYWFTIE 314 (436)
T ss_pred ChhHHHHhccchhhCCHHHHHHHHHHHHhhcCCCHHHHHHHhhhheeeec
Confidence 110 0000 0001134688888875443332244466778888755554
No 58
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=21.98 E-value=1.9e+02 Score=21.88 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022689 9 ISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 58 (293)
Q Consensus 9 ~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~~El~ 58 (293)
+.+|+.-+..|+.-..+... +.-+.-+..+|..+|.+|...-+..++
T Consensus 5 i~eL~~Dl~El~~Ll~~a~R---~rVk~~L~~ei~klE~eI~~~~~~~~a 51 (79)
T PF09032_consen 5 IEELQLDLEELKSLLEQAKR---KRVKDLLTNEIRKLETEIKKLKEAKAA 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTT---CCHHHHHHHHHHHHHHHHHHCHH-H--
T ss_pred HHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56777777777776652211 344556788999999999887654443
No 59
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=21.94 E-value=90 Score=31.38 Aligned_cols=33 Identities=39% Similarity=0.541 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHH
Q 022689 3 SRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEI 42 (293)
Q Consensus 3 ~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~ 42 (293)
++||+|--++ +++|.|-+-+++|+++|.+.+++
T Consensus 232 ~kHrqeyeei-------~~qAkkre~k~~ker~k~~eer~ 264 (586)
T KOG2223|consen 232 KKHRQEYEEI-------VKQAKKRERKEAKERKKMVEERN 264 (586)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788877664 44444333334555555555554
No 60
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=21.44 E-value=3.3e+02 Score=21.91 Aligned_cols=39 Identities=5% Similarity=0.180 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHH
Q 022689 5 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 51 (293)
Q Consensus 5 HrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~ 51 (293)
.|.+++..+..+++=..+.. ++.-+++.+|..+...|+.
T Consensus 38 qkd~L~~~l~~L~~q~~s~~--------qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 38 QKDQLRNALQSLQAQNASRN--------QRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444 4556777777777776665
No 61
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=20.51 E-value=1e+02 Score=30.76 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=38.0
Q ss_pred HHHHhHhccCCCeeeecCCCCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhc---Ccccccc
Q 022689 131 EKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRD---HSSDFLP 194 (293)
Q Consensus 131 ~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~---n~d~F~p 194 (293)
+-|..+|.+ +-.......||.|-|+.|+----- .....+|+.+|+||.. |+..|.|
T Consensus 88 DL~~~wl~k-~~~~~~~~~eg~~~f~~la~fqdy-------~Gl~~frqa~A~Fm~~~r~~~v~fdP 146 (471)
T KOG0256|consen 88 DLIESWLSK-NPEASNCTREGQSSFDELAMFQDY-------HGLPSFRQAVAEFMERARGNRVKFDP 146 (471)
T ss_pred HHHHHHHHh-ChhhhhcccccccchhhHhhcccc-------cCchHHHHHHHHHHHHHhCCCCccCc
Confidence 445666666 344445667999999999742211 2368999999999876 5566654
Done!