Query 022689
Match_columns 293
No_of_seqs 243 out of 1045
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 09:34:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 4.6E-41 1.6E-45 292.5 9.4 145 118-292 35-181 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 2.7E-36 9.2E-41 268.1 11.0 123 138-292 16-139 (212)
3 3phx_A RNA-directed RNA polyme 100.0 5.1E-32 1.7E-36 235.8 11.8 120 142-293 31-160 (185)
4 3phu_A RNA-directed RNA polyme 100.0 5.4E-32 1.9E-36 240.8 11.2 120 142-293 31-160 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 1.1E-27 3.8E-32 215.6 10.9 99 173-293 131-231 (234)
6 2zfy_A Ubiquitin thioesterase 99.9 8.3E-26 2.8E-30 203.4 9.4 98 173-292 134-234 (234)
7 4dhi_B Ubiquitin thioesterase 99.9 4.5E-24 1.5E-28 195.8 7.7 146 128-293 64-274 (284)
8 4ddg_A Ubiquitin-conjugating e 99.9 3.2E-22 1.1E-26 192.8 9.8 132 139-292 205-399 (399)
9 3dkb_A Tumor necrosis factor, 98.8 1.8E-08 6.2E-13 94.2 9.6 138 141-292 111-282 (390)
10 3zrh_A Ubiquitin thioesterase 98.7 6.7E-08 2.3E-12 91.8 9.6 140 142-292 189-348 (454)
11 3he5_B Synzip2; heterodimeric 46.7 43 0.0015 21.5 4.8 13 37-49 35-47 (52)
12 3twe_A Alpha4H; unknown functi 46.2 18 0.00061 20.4 2.6 17 6-22 7-23 (27)
13 1gmj_A ATPase inhibitor; coile 39.9 18 0.00063 26.7 2.6 21 40-61 58-78 (84)
14 3azd_A Short alpha-tropomyosin 37.5 9.4 0.00032 23.8 0.6 29 9-49 6-34 (37)
15 1ci6_A Transcription factor AT 35.0 75 0.0026 21.7 5.1 35 4-50 20-54 (63)
16 1gmj_A ATPase inhibitor; coile 32.9 1.1E+02 0.0039 22.4 6.0 21 4-24 55-75 (84)
17 3viq_B Mating-type switching p 32.4 34 0.0012 25.3 3.0 31 8-50 2-32 (85)
18 2xu6_A MDV1 coiled coil; prote 31.7 77 0.0026 22.6 4.7 30 7-48 21-50 (72)
19 2vof_A BCL-2-related protein A 30.4 44 0.0015 27.1 3.8 66 172-240 37-104 (157)
20 3bas_A Myosin heavy chain, str 29.0 1.2E+02 0.0041 22.1 5.7 48 3-55 10-57 (89)
21 3q8j_A Asteropsin A, ABU8-1; c 28.1 11 0.00039 22.6 -0.1 18 138-155 19-36 (37)
22 1l8d_A DNA double-strand break 26.5 79 0.0027 23.6 4.4 35 4-50 68-102 (112)
23 3hnw_A Uncharacterized protein 25.1 1.5E+02 0.0052 23.5 6.1 15 36-50 120-134 (138)
24 2eqb_B RAB guanine nucleotide 23.8 2E+02 0.0068 21.6 6.0 14 7-20 5-18 (97)
25 3ol1_A Vimentin; structural ge 23.2 2.2E+02 0.0074 21.8 6.5 49 9-62 64-115 (119)
26 2dgc_A Protein (GCN4); basic d 22.8 1E+02 0.0035 21.1 4.0 9 11-19 34-42 (63)
27 1jad_A PLC-beta, phospholipase 22.5 2.2E+02 0.0074 25.1 7.0 57 3-61 130-209 (251)
28 3pzp_A DNA polymerase kappa; D 22.5 50 0.0017 32.1 3.2 73 91-163 32-109 (517)
29 1t3j_A Mitofusin 1; coiled coi 22.0 64 0.0022 24.3 3.0 18 33-50 47-64 (96)
30 2dq0_A Seryl-tRNA synthetase; 21.5 1.9E+02 0.0064 27.5 7.0 24 31-54 74-97 (455)
31 3lay_A Zinc resistance-associa 21.1 2E+02 0.0069 23.8 6.2 22 33-54 113-134 (175)
32 3pzp_A DNA polymerase kappa; D 20.8 94 0.0032 30.1 4.7 39 13-51 22-62 (517)
33 2yy0_A C-MYC-binding protein; 20.7 84 0.0029 20.9 3.1 16 6-21 25-40 (53)
34 3i00_A HIP-I, huntingtin-inter 20.2 2.1E+02 0.0072 22.2 5.8 40 6-53 21-60 (120)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=4.6e-41 Score=292.49 Aligned_cols=145 Identities=23% Similarity=0.399 Sum_probs=111.3
Q ss_pred HHhcccCCCchHHHHHHhHhccCCCeeeecCCCCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccc
Q 022689 118 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL 197 (293)
Q Consensus 118 e~~~~~~~r~~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~ 197 (293)
|+...++.+..|..-+..+|..+||.+++||+|||||||||++||++ .+..|..||+.||+||++|+++|.|||.
T Consensus 35 ~~~~~~~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g-----~~~~h~~LR~~vv~yi~~n~d~f~~Fv~ 109 (185)
T 3pfy_A 35 EAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYG-----DQDMHEVVRKHCMDYLMKNADYFSNYVT 109 (185)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHS-----CGGGHHHHHHHHHHHHHHTHHHHTTCC-
T ss_pred HhccCCCHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666899999999999999999999999999999999999998 4678999999999999999999999995
Q ss_pred CccccchhhhhhhhhhHHHHHHHhhcCCCcCcHHHHHHHHHhhcCcEEEEECCCCceE-e-CCCCCCCCCCCCCCeEEEE
Q 022689 198 SENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVE-M-GKEYSNGGSDSSGSSIILS 275 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~AlA~~l~~~I~V~~~~~~~~~-~-g~e~~~~~~~~~~~~i~L~ 275 (293)
+ +|++||.+|+++++|||++||+|||++|+++|.||+.+++++. + |.+. ...++|+|+
T Consensus 110 ~--------------~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~------~~~~~I~L~ 169 (185)
T 3pfy_A 110 E--------------DFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ------NEDEPIRVS 169 (185)
T ss_dssp ------------------------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSC------CTTSCEEEE
T ss_pred c--------------cHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccC------CCCCEEEEE
Confidence 3 6999999999999999999999999999999999998875543 4 3322 236899999
Q ss_pred eccCCCCCCCccccccc
Q 022689 276 YHRHAFGLGEHYNSVIP 292 (293)
Q Consensus 276 Y~~~~y~lGeHYnSl~p 292 (293)
||+ |+|||||++
T Consensus 170 Y~~-----~~HYnSv~~ 181 (185)
T 3pfy_A 170 YHR-----NIHYNSVVN 181 (185)
T ss_dssp EET-----TTEEEEEEC
T ss_pred ECC-----CCCcccccC
Confidence 998 599999986
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=100.00 E-value=2.7e-36 Score=268.07 Aligned_cols=123 Identities=20% Similarity=0.385 Sum_probs=109.4
Q ss_pred ccCCCeeeecCCCCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHH
Q 022689 138 GPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENY 217 (293)
Q Consensus 138 ~~~gL~i~~I~~DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y 217 (293)
...||.+++||+|||||||||++|| + .+..|..||+.||+||++|+++|.+|+.+ .+|++|
T Consensus 16 ~~~~l~~~~i~~DGnCLFrAva~qL-~-----~~~~~~~lR~~vv~yi~~n~d~f~e~~~~-------------~~~e~Y 76 (212)
T 3by4_A 16 GENVLSVHPVLDDNSCLFHAIAYGI-F-----KQDSVRDLREMVSKEVLNNPVKFNDAILD-------------KPNKDY 76 (212)
T ss_dssp CCSEEEEECCCCSTTHHHHHHHHHH-H-----SSCCSHHHHHHHHHHHHHCTTTTCHHHHT-------------SCHHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHh-C-----CchHHHHHHHHHHHHHHHCHHHHhhhhcC-------------CCHHHH
Confidence 4558999999999999999999999 6 35689999999999999999999877654 369999
Q ss_pred HHHhhcCCCcCcHHHHHHHHHhhcCcEEEEECCC-CceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 022689 218 CKEVESTAAWGGELELRALTHCLRKHIMIYSGSF-PDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 292 (293)
Q Consensus 218 ~~~m~~~~~WGG~lEL~AlA~~l~~~I~V~~~~~-~~~~~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~p 292 (293)
|.+|+++++|||++||+|||++|++||.||+.++ +.+.||+++ ..++|+|+|+ |+|||||++
T Consensus 77 ~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~~~~~~-------~~~~I~L~Y~------g~HYdsl~~ 139 (212)
T 3by4_A 77 AQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNEDK-------FDNYILILFN------GIHYDSLTM 139 (212)
T ss_dssp HHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEEEEESTTT-------CSEEEEEEEC------SSCEEEEEE
T ss_pred HHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCeEEeCCCC-------CCCeEEEEEc------CCcceEEec
Confidence 9999999999999999999999999999999874 667788654 2679999997 799999975
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.97 E-value=5.1e-32 Score=235.80 Aligned_cols=120 Identities=17% Similarity=0.319 Sum_probs=100.2
Q ss_pred CeeeecCCCCCchHHHHHHHHhhccCCCCcch-----HHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHH
Q 022689 142 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYN-----FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFEN 216 (293)
Q Consensus 142 L~i~~I~~DGnCLFrAIa~qL~~~~~~~~~~~-----~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~ 216 (293)
+.+..||||||||||||++||++.. +.. |..||+.|++||++|+++| +.+ .+|++
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~----~~~~~~~~~~~LR~~~~~yi~~~~~~~---~~~-------------~~~~~ 90 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNK----TDHSYHYIKRLTESAARKYYQEEPEAR---LVG-------------LSLED 90 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTC----CTTTHHHHHHHHHHHHHHHGGGCTTHH---HHC-------------CCHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCC----ccchhhhHHHHHHHHHHHHHHhChHhh---hcC-------------CCHHH
Confidence 7788999999999999999998841 234 8999999999999999983 222 37999
Q ss_pred HHHHhhcCCCcCcHHHHHHHHHhhcCcEEEEECCCCc-----eEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 022689 217 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD-----VEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 291 (293)
Q Consensus 217 Y~~~m~~~~~WGG~lEL~AlA~~l~~~I~V~~~~~~~-----~~~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~ 291 (293)
||++|+++++|||++||+|||++|+++|.|++.+++. +.+|++. ..++|+|+|+. |+|||||+
T Consensus 91 Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~-------~~~~I~L~Y~g-----~~HYdsl~ 158 (185)
T 3phx_A 91 YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALR 158 (185)
T ss_dssp HHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESSCC-------TTTSEEEEEET-----TTEEEEEE
T ss_pred HHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCCCC-------CCCEEEEEECC-----CcCchhce
Confidence 9999999999999999999999999999999977654 4565432 26899999983 49999998
Q ss_pred cC
Q 022689 292 PI 293 (293)
Q Consensus 292 p~ 293 (293)
|+
T Consensus 159 ~~ 160 (185)
T 3phx_A 159 IL 160 (185)
T ss_dssp EC
T ss_pred EC
Confidence 74
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.97 E-value=5.4e-32 Score=240.84 Aligned_cols=120 Identities=16% Similarity=0.306 Sum_probs=102.0
Q ss_pred CeeeecCCCCCchHHHHHHHHhhccCCCCcch-----HHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHH
Q 022689 142 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYN-----FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFEN 216 (293)
Q Consensus 142 L~i~~I~~DGnCLFrAIa~qL~~~~~~~~~~~-----~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~ 216 (293)
+.+..||||||||||||++||++.. +.. |..||+.|++||++|+++| +.+ .+|++
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~----~~~~~~~~h~~LR~~va~yi~~n~d~~---~~~-------------~~fee 90 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNK----TDHSYHYIKRLTESAARKYYQEEPEAR---LVG-------------LSLED 90 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTC----CTTTHHHHHHHHHHHHHHHGGGCHHHH---HHC-------------CCHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCC----ccchhhhHHHHHHHHHHHHHHhChhhh---hcC-------------CCHHH
Confidence 7789999999999999999998741 233 8999999999999999983 222 37999
Q ss_pred HHHHhhcCCCcCcHHHHHHHHHhhcCcEEEEECCCC-----ceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 022689 217 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFP-----DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 291 (293)
Q Consensus 217 Y~~~m~~~~~WGG~lEL~AlA~~l~~~I~V~~~~~~-----~~~~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~ 291 (293)
||++|+++++|||++||+|||++|+++|+||+.+++ .+.||++. ..++|+|+|+. |+|||||+
T Consensus 91 Y~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~-------~~~~I~L~Y~g-----~~HYdSL~ 158 (219)
T 3phu_A 91 YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALR 158 (219)
T ss_dssp HHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESSCC-------TTTSEEEEEET-----TTEEEEEE
T ss_pred HHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecCCC-------CCCeEEEEECC-----CcCchhhe
Confidence 999999999999999999999999999999998766 34566532 26899999984 59999998
Q ss_pred cC
Q 022689 292 PI 293 (293)
Q Consensus 292 p~ 293 (293)
|+
T Consensus 159 ~~ 160 (219)
T 3phu_A 159 IL 160 (219)
T ss_dssp EC
T ss_pred EC
Confidence 74
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.95 E-value=1.1e-27 Score=215.57 Aligned_cols=99 Identities=23% Similarity=0.359 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHH-HhhcCCCcCcHHHHHHHHHhhcCcEEEEECCC
Q 022689 173 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSF 251 (293)
Q Consensus 173 ~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~~WGG~lEL~AlA~~l~~~I~V~~~~~ 251 (293)
.+..||..++.||+.|+|+|.|||.++ .+|++||. .|+.+++|||++||+|||++|++||.|++.++
T Consensus 131 iv~~lR~lta~~i~~~~d~f~pFi~~~------------~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~ 198 (234)
T 1tff_A 131 IVQFLRLLTSAFIRNRADFFRHFIDEE------------MDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDE 198 (234)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSCTT------------SCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-
T ss_pred HHHHHHHHHHHHHHHCHHHHhhhhcCC------------CCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCC
Confidence 457799999999999999999999752 26999999 79999999999999999999999999999887
Q ss_pred CceE-eCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 022689 252 PDVE-MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 293 (293)
Q Consensus 252 ~~~~-~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~p~ 293 (293)
+... ....|.. ...+.|+|+|+ ++|||+|+|.
T Consensus 199 ~~~~~~~~~~~~----~~~~~I~LlY~------pgHYdily~~ 231 (234)
T 1tff_A 199 MDTALNHHVFPE----AATPSVYLLYK------TSHYNILYAA 231 (234)
T ss_dssp ------CCCCCC----CSSCSEEEEEE------TTEEEEEEEC
T ss_pred CCCccccccCCC----CCCCeEEEEEC------CCCceecccC
Confidence 6522 2234432 24678999998 4799999984
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.92 E-value=8.3e-26 Score=203.40 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHH-HhhcCCCcCcHHHHHHHHHhhcCcEEEEECCC
Q 022689 173 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSF 251 (293)
Q Consensus 173 ~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~~WGG~lEL~AlA~~l~~~I~V~~~~~ 251 (293)
.+..||..++.||+.|+|+|.|||.++ .+|++||. .|+.+++|||++||.|||++|++||.|++.++
T Consensus 134 ~v~~lR~lta~yi~~~~d~f~pFi~~~------------~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~ 201 (234)
T 2zfy_A 134 LVVYLRLLTSGYLQRESKFFEHFIEGG------------RTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDR 201 (234)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGCCSS------------CCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-
T ss_pred HHHHHHHHHHHHHHHCHHHHhcccCCC------------CCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCC
Confidence 467899999999999999999999752 36999998 59999999999999999999999999999886
Q ss_pred Cce--EeCCCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 022689 252 PDV--EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 292 (293)
Q Consensus 252 ~~~--~~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~p 292 (293)
+.. ..+..|+. ...++|+|+|+. +|||+|+|
T Consensus 202 ~~~~~v~~~~f~~----~~~p~I~LlY~p------gHYdiLy~ 234 (234)
T 2zfy_A 202 GEGGTTNPHIFPE----GSEPKVYLLYRP------GHYDILYK 234 (234)
T ss_dssp CCSSCCEEEEEST----TCCCSEEEEEET------TEEEEEEC
T ss_pred CCCCcccceeCCC----CCCCeEEEEECC------CCcccCCC
Confidence 541 22334432 236789999984 59999998
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.89 E-value=4.5e-24 Score=195.78 Aligned_cols=146 Identities=19% Similarity=0.285 Sum_probs=107.8
Q ss_pred hHHHHHHhHhccCCCeeeecCCCCCchHHHHHHHHhhccC-----------------------CC---------------
Q 022689 128 VEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSG-----------------------GA--------------- 169 (293)
Q Consensus 128 ~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~qL~~~~~-----------------------~~--------------- 169 (293)
+=..++..+-.. --.++.|.|||||+|||+++++...-. |.
T Consensus 64 ~~~~Ki~~L~~~-Y~~~R~~RGDGNCFyRAf~F~ylE~Ll~~~~e~~r~~~~~~~s~~~L~~~G~~~~~~eDF~d~f~el 142 (284)
T 4dhi_B 64 AFLSKATELSEV-YGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDFFIEF 142 (284)
T ss_dssp HHHHHHHHHHTT-EEEEECBCCSTTHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccceeeecCCCchhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHCCCchhhHHHHHHHHHHH
Confidence 445555444433 446889999999999999988753200 00
Q ss_pred -----------------------CcchHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHH-HhhcCC
Q 022689 170 -----------------------SPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTA 225 (293)
Q Consensus 170 -----------------------~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~ 225 (293)
+..-+..||..++.||+.|+|+|.|||.++ .++++||. .|+.++
T Consensus 143 l~~i~~~~~~~~~L~~~Fnd~~~S~~iv~~LRllts~yi~~~~d~f~pFi~~~------------~~v~~yC~~eVe~~~ 210 (284)
T 4dhi_B 143 LEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAFLKQNSEEYAPFIDEG------------MTVAQYCEQEIEPMW 210 (284)
T ss_dssp HHHHHHTCSCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTT------------CCHHHHHHHHTSSTT
T ss_pred HHHHhcCCCcHHHHHHHhcCcccchHHHHHHHHHHHHHHHHCHHHHHhhcCCC------------CCHHHHHHHhceehh
Confidence 112467899999999999999999999752 36999999 799999
Q ss_pred CcCcHHHHHHHHHhhcCcEEEEECCCC---ceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 022689 226 AWGGELELRALTHCLRKHIMIYSGSFP---DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 293 (293)
Q Consensus 226 ~WGG~lEL~AlA~~l~~~I~V~~~~~~---~~~~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~p~ 293 (293)
.|||+++|+|||++|++||.|++.++. .+.....|. ++.....+.|+|.|. +.|||.|+|.
T Consensus 211 ~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp-~~~~~~~p~I~LLYr------pgHYDILY~~ 274 (284)
T 4dhi_B 211 KDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIP-SDDQQIAPEITLLYR------PGHYDVIYKK 274 (284)
T ss_dssp CCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEES-CCCSCCCCSEEEEEE------TTEEEEEEEC
T ss_pred hcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCC-CCCCCCCCEEEEeec------CCCccccccC
Confidence 999999999999999999999987742 111110131 111123478999998 5899999984
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.86 E-value=3.2e-22 Score=192.75 Aligned_cols=132 Identities=20% Similarity=0.305 Sum_probs=102.6
Q ss_pred cCCCeeeecCCCCCchHHHHHHHHhhccC-----------------------CCC-------------------------
Q 022689 139 PLGLTVNDIKPDGHCLYRAVEDQLAHLSG-----------------------GAS------------------------- 170 (293)
Q Consensus 139 ~~gL~i~~I~~DGnCLFrAIa~qL~~~~~-----------------------~~~------------------------- 170 (293)
..--.++.|.|||||+|||+++++..... +..
T Consensus 205 ~~y~~~R~vrgDGNCFYRAf~f~ylE~ll~~~~e~~r~~~~~~~~~~~l~~~g~~~~~~edf~~~f~~ll~~i~~~~~~~ 284 (399)
T 4ddg_A 205 KKYSYIRKTRPDGNSFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVA 284 (399)
T ss_dssp HHCSEEECBCCSSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred hhcCeeeeecCCCchHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHccCCHH
Confidence 33457899999999999999987765311 000
Q ss_pred ------------cchHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHH-HhhcCCCcCcHHHHHHHH
Q 022689 171 ------------PYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRALT 237 (293)
Q Consensus 171 ------------~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~~WGG~lEL~AlA 237 (293)
..-+..||..++.||+.|+|+|.|||.+. .++++||. .|+.+++||||++|.|||
T Consensus 285 ~L~~~fnd~~~s~~iv~~lRllts~~i~~~~d~f~pFi~~~------------~~v~~yc~~~ve~~~~e~d~l~I~ALa 352 (399)
T 4ddg_A 285 DLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGG------------RTVKEFCQQEVEPMCKESDHIHIIALA 352 (399)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSSSS------------CCHHHHHHHHTSSTTCCBCHHHHHHHH
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHHHCHHHHhcccCCC------------CCHHHHHHHhceeHHhhCcHHHHHHHH
Confidence 12357799999999999999999999752 36999999 899999999999999999
Q ss_pred HhhcCcEEEEECCCCc-eEeC-CCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 022689 238 HCLRKHIMIYSGSFPD-VEMG-KEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 292 (293)
Q Consensus 238 ~~l~~~I~V~~~~~~~-~~~g-~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~p 292 (293)
++|+++|.|+..++.. ..+. ..|. .+..+.|+|.|.. .|||.|+|
T Consensus 353 ~al~v~I~V~yld~~~~~~v~~~~~~----~~~~~~I~LLYrP------gHYDiLY~ 399 (399)
T 4ddg_A 353 QALSVSIQVEYMDRGEGGTTNPHIFP----EGSEPKVYLLYRP------GHYDILYK 399 (399)
T ss_dssp HHHTCCCEEEECSCCSSSCCCEEETT----TTCCCCCEEEEET------BEEEEEEC
T ss_pred HHcCCcEEEEEcCCCCCCccceeeCC----CCCCCEEEEEEcC------CccccCCC
Confidence 9999999999866521 1111 1131 1236889999986 59999997
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.78 E-value=1.8e-08 Score=94.23 Aligned_cols=138 Identities=17% Similarity=0.281 Sum_probs=85.6
Q ss_pred CCeeeecCCCCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcc-ccc-----------ccccCccccchhhhh
Q 022689 141 GLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSS-DFL-----------PFYLSENMIGEESAQ 208 (293)
Q Consensus 141 gL~i~~I~~DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d-~F~-----------pfl~~~~~~~~~~~~ 208 (293)
-|......||||||.+|++..++|. .+....||+...+.|+.... .|. .|... +-.++..
T Consensus 111 rL~pL~t~GDGnCLLHAvSqamWGv-----~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~---gL~y~e~ 182 (390)
T 3dkb_A 111 KLVALKTNGDGNCLMHATSQYMWGV-----QDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVET---GLCYDTR 182 (390)
T ss_dssp CEEEBCCCCSSCHHHHHHHHHHHSS-----CSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC-------CCSS
T ss_pred ceEEEEecCCCchHHHHHhHHhcCC-----CCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhh---cccccHH
Confidence 4667788899999999999999994 56778899999999987642 231 11110 0000000
Q ss_pred hhhhhHHHHHHHhhcCC------C-c--CcHHHHHHHHHhhcCcEEEEECC-------CC---ceEeCCCCCC---CCCC
Q 022689 209 SQVERFENYCKEVESTA------A-W--GGELELRALTHCLRKHIMIYSGS-------FP---DVEMGKEYSN---GGSD 266 (293)
Q Consensus 209 ~~~~~~~~Y~~~m~~~~------~-W--GG~lEL~AlA~~l~~~I~V~~~~-------~~---~~~~g~e~~~---~~~~ 266 (293)
.-..+|+.-+..-..+. . + =-++-+.+||++|++||+||... |. ++.||.-|.+ +...
T Consensus 183 ew~~EW~~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~ 262 (390)
T 3dkb_A 183 NWNDEWDNLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQE 262 (390)
T ss_dssp CSSHHHHHHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTS
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHH
Confidence 01244544444332221 1 1 13788999999999999999632 11 1223322221 1233
Q ss_pred CCCCeEEEEeccCCCCCCCccccccc
Q 022689 267 SSGSSIILSYHRHAFGLGEHYNSVIP 292 (293)
Q Consensus 267 ~~~~~i~L~Y~~~~y~lGeHYnSl~p 292 (293)
....||.|+|.+ .||.+|++
T Consensus 263 C~rsPI~LgY~s------~HFsaLV~ 282 (390)
T 3dkb_A 263 CYRYPIVLGYDS------HHFVPLVT 282 (390)
T ss_dssp SCSSCEEEEECS------SCEEEEEE
T ss_pred ccCCceEEEecc------Cceeeeee
Confidence 457899999997 69999986
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.66 E-value=6.7e-08 Score=91.80 Aligned_cols=140 Identities=19% Similarity=0.177 Sum_probs=87.9
Q ss_pred CeeeecCCCCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccc-Cc-----cccchh--hhhhhhhh
Q 022689 142 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL-SE-----NMIGEE--SAQSQVER 213 (293)
Q Consensus 142 L~i~~I~~DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~-~~-----~~~~~~--~~~~~~~~ 213 (293)
|......||||||-+|++..++|. .+....||+...+.|.+....|..-.- .+ ..|-.+ +...-..+
T Consensus 189 L~pL~t~GDGNCLLHAvSqamWGV-----~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~E 263 (454)
T 3zrh_A 189 LYALWNRTAGDCLLDSVLQATWGI-----YDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQED 263 (454)
T ss_dssp EEEBCCCCSSCHHHHHHHHTTTSS-----CCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHH
T ss_pred eeEeeecCCCccHHHHHHHHhhcc-----cCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHH
Confidence 556678899999999999999994 567789999999999875444421110 00 000000 00001234
Q ss_pred HHHHHHHhhcCCCcCcHHHHHHHHHhhcCcEEEEECCC---------CceEeCCCCCC---CCCCCCCCeEEEEeccCCC
Q 022689 214 FENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSF---------PDVEMGKEYSN---GGSDSSGSSIILSYHRHAF 281 (293)
Q Consensus 214 ~~~Y~~~m~~~~~WGG~lEL~AlA~~l~~~I~V~~~~~---------~~~~~g~e~~~---~~~~~~~~~i~L~Y~~~~y 281 (293)
|+.-+..-..++.==-++-+.+||++|++||+||.... .++.||.-|-+ +.+.....||.|+|.+
T Consensus 264 W~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~--- 340 (454)
T 3zrh_A 264 WAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR--- 340 (454)
T ss_dssp HHHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET---
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc---
Confidence 44444444455554457789999999999999998542 11223322221 1123446899999997
Q ss_pred CCCCccccccc
Q 022689 282 GLGEHYNSVIP 292 (293)
Q Consensus 282 ~lGeHYnSl~p 292 (293)
.||.+|++
T Consensus 341 ---gHFsaLV~ 348 (454)
T 3zrh_A 341 ---GHFSALVA 348 (454)
T ss_dssp ---TEEEEEEE
T ss_pred ---cceeeeee
Confidence 59999886
No 11
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=46.72 E-value=43 Score=21.51 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHH
Q 022689 37 QVEEEISRLSAKL 49 (293)
Q Consensus 37 ~v~~e~~~le~el 49 (293)
.+.+||++||.|.
T Consensus 35 nlrdeiarlenev 47 (52)
T 3he5_B 35 NLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667778777765
No 12
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=46.19 E-value=18 Score=20.37 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 022689 6 RKEISQLQNKETELKKA 22 (293)
Q Consensus 6 rkE~k~Lq~~i~~~kk~ 22 (293)
-||+.|||.++..++|.
T Consensus 7 ykeledlqerlrklrkk 23 (27)
T 3twe_A 7 YKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47999999998777653
No 13
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=39.90 E-value=18 Score=26.70 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcc
Q 022689 40 EEISRLSAKLREKHAKELASLG 61 (293)
Q Consensus 40 ~e~~~le~el~~rh~~El~~~~ 61 (293)
++|.+||.++ +||+.-|..|.
T Consensus 58 ~ei~~le~~i-~rhk~~i~~l~ 78 (84)
T 1gmj_A 58 KEIERLQKEI-ERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHhh
Confidence 3556666666 55666666654
No 14
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=37.52 E-value=9.4 Score=23.77 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHH
Q 022689 9 ISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 49 (293)
Q Consensus 9 ~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el 49 (293)
...|+.||++|.-.+- .+.++...++.+|
T Consensus 6 i~avKkKiq~lq~q~d------------~aee~~~~~~~~l 34 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNY------------HLENEVARLKKLV 34 (37)
T ss_dssp CHHHHHHHHHHHHHTT------------TTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHh
Confidence 4567777777775444 4555666665554
No 15
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.02 E-value=75 Score=21.75 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHH
Q 022689 4 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 50 (293)
Q Consensus 4 rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~ 50 (293)
+.+.+..+|+.++..|+. ...++..+|+.|+.|+.
T Consensus 20 KKk~~~~~le~~~~~L~~------------~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEK------------KNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 345566677777777753 33477777777777654
No 16
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.86 E-value=1.1e+02 Score=22.37 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhc
Q 022689 4 RHRKEISQLQNKETELKKAAA 24 (293)
Q Consensus 4 rHrkE~k~Lq~~i~~~kk~~~ 24 (293)
.|++|+++|+..|...|+.+.
T Consensus 55 ~h~~ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 55 HHAKEIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554443
No 17
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.35 E-value=34 Score=25.29 Aligned_cols=31 Identities=35% Similarity=0.450 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHH
Q 022689 8 EISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 50 (293)
Q Consensus 8 E~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~ 50 (293)
|+..|+++|..|+ ..+.++..+|++++++|.
T Consensus 2 ~~~~L~~~i~~L~------------~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 2 EKSQLESRVHLLE------------QQKEQLESSLQDALAKLK 32 (85)
T ss_dssp CHHHHHHHHHHHH------------HHHHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhc
Confidence 3567888888886 334578888888876543
No 18
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=31.66 E-value=77 Score=22.64 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHH
Q 022689 7 KEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAK 48 (293)
Q Consensus 7 kE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~e 48 (293)
-|++++-.||..|+ ..|+-|-+.+|.+|.+
T Consensus 21 sEI~EID~Ki~nL~------------~mR~ivldRlA~lEqd 50 (72)
T 2xu6_A 21 SEIRDIEVEVENLR------------QKKEKLLGKIANIEQN 50 (72)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhh
Confidence 48889999999986 5678899999988753
No 19
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=30.38 E-value=44 Score=27.10 Aligned_cols=66 Identities=9% Similarity=0.149 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHHHhhcCC--CcCcHHHHHHHHHhh
Q 022689 172 YNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTA--AWGGELELRALTHCL 240 (293)
Q Consensus 172 ~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~--~WGG~lEL~AlA~~l 240 (293)
.....||..+......|+..|.+++..-...+ .......|..-.+.|-.+| .||==+-|.|++-.+
T Consensus 37 ~~~~~Lr~~~~ele~~~~~~f~~~~~~l~i~~---~~~a~~~f~~Va~elF~dg~inWGRIVal~~F~g~l 104 (157)
T 2vof_A 37 QACRVLQRVAFSVQKEVEKNLKSYLDDFHVES---IDTARIIFNQVMEKEFEDGIINWGRIVTIFAFGGVL 104 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTTCCCCS---HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---cchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 35677888888888889888888775432101 0112345667777777777 899999999888776
No 20
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.01 E-value=1.2e+02 Score=22.11 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=38.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 022689 3 SRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 55 (293)
Q Consensus 3 ~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~~ 55 (293)
+|--.|.+.+...+..++....|.. +.|+++...+.+|..+-.+=+.+
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e-----~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTE-----RIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999998887433 67899999999998887766655
No 21
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=28.09 E-value=11 Score=22.64 Aligned_cols=18 Identities=50% Similarity=0.826 Sum_probs=13.9
Q ss_pred ccCCCeeeecCCCCCchH
Q 022689 138 GPLGLTVNDIKPDGHCLY 155 (293)
Q Consensus 138 ~~~gL~i~~I~~DGnCLF 155 (293)
--+||...+=.|||.|.|
T Consensus 19 pglgltcipgnpdgtcyy 36 (37)
T 3q8j_A 19 PGLGLTCIPGNPDGTCYY 36 (37)
T ss_dssp TTSCEEEEECSSEEEEEE
T ss_pred CCCCcEecCCCCCceEEe
Confidence 346777777778999976
No 22
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.47 E-value=79 Score=23.59 Aligned_cols=35 Identities=14% Similarity=0.369 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHH
Q 022689 4 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 50 (293)
Q Consensus 4 rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~ 50 (293)
.+..++++|+.+|..++.... .++.++..|+.++.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~------------~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKS------------ELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 455666666666666654333 55566666666655
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.12 E-value=1.5e+02 Score=23.49 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 022689 36 KQVEEEISRLSAKLR 50 (293)
Q Consensus 36 k~v~~e~~~le~el~ 50 (293)
..+..++.+||.+|+
T Consensus 120 ~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 120 NKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 24
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.80 E-value=2e+02 Score=21.65 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 022689 7 KEISQLQNKETELK 20 (293)
Q Consensus 7 kE~k~Lq~~i~~~k 20 (293)
++.-.|..+|..+.
T Consensus 5 ~~~e~lre~l~~le 18 (97)
T 2eqb_B 5 SNYNQLKEDYNTLK 18 (97)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555554
No 25
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.21 E-value=2.2e+02 Score=21.84 Aligned_cols=49 Identities=12% Similarity=0.293 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHccC
Q 022689 9 ISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL---REKHAKELASLGY 62 (293)
Q Consensus 9 ~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el---~~rh~~El~~~~~ 62 (293)
+..+.+.|.++||-+--. --.|=++..+|..|..|| +.-|.+||.+|..
T Consensus 64 r~~~E~di~~lrK~lD~~-----~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNA-----SLARLDLERKVESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhcccHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888866310 144667888888888875 5779999998864
No 26
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.81 E-value=1e+02 Score=21.13 Aligned_cols=9 Identities=56% Similarity=0.719 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 022689 11 QLQNKETEL 19 (293)
Q Consensus 11 ~Lq~~i~~~ 19 (293)
+|+.++..|
T Consensus 34 ~Le~~v~~L 42 (63)
T 2dgc_A 34 QLEDKVEEL 42 (63)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 27
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=22.54 E-value=2.2e+02 Score=25.11 Aligned_cols=57 Identities=26% Similarity=0.390 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHHHH--------HHHhhhccCChhHHhhhhHHH--------HHHHHHH-------HHHHHHHHHHHHHH
Q 022689 3 SRHRKEISQLQNKET--------ELKKAAAKGSKAEQKAKKKQV--------EEEISRL-------SAKLREKHAKELAS 59 (293)
Q Consensus 3 ~rHrkE~k~Lq~~i~--------~~kk~~~k~~k~~~Kk~~k~v--------~~e~~~l-------e~el~~rh~~El~~ 59 (293)
.+|-+|.|||+.+.. .++. -+ .+|+++=.+++++ -.++.+| +..|..+|.+-|..
T Consensus 130 ~~~ErE~KELkk~q~kks~e~i~e~~~-kt-K~K~e~Er~~rEin~s~ike~veerkrl~~kQ~k~qEkL~~~h~e~le~ 207 (251)
T 1jad_A 130 ESSESNIKDIKKKLEAKRLDRIQVMMR-ST-SDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRA 207 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999987644 3443 12 4554222233333 3444444 34566666666666
Q ss_pred cc
Q 022689 60 LG 61 (293)
Q Consensus 60 ~~ 61 (293)
|.
T Consensus 208 l~ 209 (251)
T 1jad_A 208 IQ 209 (251)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 28
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=22.52 E-value=50 Score=32.08 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=44.0
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhcccCC--C--chHHHHHHhHhcc-CCCeeeecCCCCCchHHHHHHHHh
Q 022689 91 QAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSD--R--TVEDEKLEKKLGP-LGLTVNDIKPDGHCLYRAVEDQLA 163 (293)
Q Consensus 91 ~~~~~k~~~r~~~r~~~~~~~~~~i~~e~~~~~~~--r--~~E~~~l~~~L~~-~gL~i~~I~~DGnCLFrAIa~qL~ 163 (293)
.++.||=.++..+|.++-.++.+++.+..+..... + ..+.+.+...|+. +.+...-+-=|-||||.||.....
T Consensus 32 ~s~gs~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~r~~~r~I~hiDmDaFYAsvE~~~~ 109 (517)
T 3pzp_A 32 ATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDN 109 (517)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHCCCSCCEEEEEESSHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhccCcCcEEEEEecCcHHHHHHHHhC
Confidence 45667767777777777777777777655544322 1 1223334444442 455544455699999999986544
No 29
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.03 E-value=64 Score=24.33 Aligned_cols=18 Identities=44% Similarity=0.689 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 022689 33 AKKKQVEEEISRLSAKLR 50 (293)
Q Consensus 33 k~~k~v~~e~~~le~el~ 50 (293)
-+..++++||++|+.++.
T Consensus 47 ~t~~eL~~EI~~L~~eI~ 64 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEID 64 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666665543
No 30
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.53 E-value=1.9e+02 Score=27.51 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=17.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHH
Q 022689 31 QKAKKKQVEEEISRLSAKLREKHA 54 (293)
Q Consensus 31 ~Kk~~k~v~~e~~~le~el~~rh~ 54 (293)
-+..-+++.+++..||.++.+-.+
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356668888899999888876543
No 31
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.06 E-value=2e+02 Score=23.78 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 022689 33 AKKKQVEEEISRLSAKLREKHA 54 (293)
Q Consensus 33 k~~k~v~~e~~~le~el~~rh~ 54 (293)
.+=+.+.+|+..|..+|...+.
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888888776543
No 32
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=20.84 E-value=94 Score=30.12 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhccCCh--hHHhhhhHHHHHHHHHHHHHHHH
Q 022689 13 QNKETELKKAAAKGSK--AEQKAKKKQVEEEISRLSAKLRE 51 (293)
Q Consensus 13 q~~i~~~kk~~~k~~k--~~~Kk~~k~v~~e~~~le~el~~ 51 (293)
+.+|..+=..++||+| .-.+++.++++..|++|...+..
T Consensus 22 ~~~i~~ii~~~s~gs~f~~~~~~~~~~~~~~i~~~~~~~~~ 62 (517)
T 3pzp_A 22 KEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQ 62 (517)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777778888887 22346678888888888666543
No 33
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.68 E-value=84 Score=20.88 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 022689 6 RKEISQLQNKETELKK 21 (293)
Q Consensus 6 rkE~k~Lq~~i~~~kk 21 (293)
+.|..+|+.++..|++
T Consensus 25 k~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVE 40 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666666555543
No 34
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.22 E-value=2.1e+02 Score=22.21 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHH
Q 022689 6 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 53 (293)
Q Consensus 6 rkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh 53 (293)
+.|...|++.+..++--+- .-=-++...|..||.+|.+..
T Consensus 21 kreie~lk~ele~l~~E~q--------~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 21 YREISGLKAQLENMKTESQ--------RVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666653332 333567778888888888764
Done!