Query 022690
Match_columns 293
No_of_seqs 194 out of 443
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:35:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 100.0 2.6E-50 8.9E-55 342.7 5.1 129 141-269 2-130 (140)
2 1k1g_A SF1-BO isoform; splicin 100.0 7.8E-42 2.7E-46 287.1 7.0 124 138-268 4-130 (131)
3 2yqr_A KIAA0907 protein; struc 100.0 6.4E-30 2.2E-34 211.9 7.1 103 137-252 8-111 (119)
4 3k6t_A Female germline-specifi 99.1 1.4E-10 4.7E-15 85.5 4.8 38 33-70 7-44 (60)
5 4dnn_A Protein quaking, MQKI, 99.0 8.6E-11 2.9E-15 85.2 2.9 38 33-70 4-44 (56)
6 2xa6_A KH domain-containing\,R 98.9 1E-09 3.5E-14 74.9 5.3 36 31-69 5-40 (41)
7 2opv_A KHSRP protein; KH domai 98.8 8.6E-09 2.9E-13 79.2 6.3 71 141-239 14-84 (85)
8 1dtj_A RNA-binding neurooncolo 98.7 2E-08 6.8E-13 75.0 5.6 73 140-239 2-74 (76)
9 1x4m_A FAR upstream element bi 98.6 3.2E-08 1.1E-12 77.5 5.1 73 140-240 14-86 (94)
10 1x4n_A FAR upstream element bi 98.5 8.4E-08 2.9E-12 74.8 4.5 70 140-239 14-83 (92)
11 2hh2_A KH-type splicing regula 98.5 1.4E-07 4.8E-12 75.6 5.0 72 142-240 8-79 (107)
12 1zzk_A Heterogeneous nuclear r 98.4 1.6E-07 5.4E-12 71.6 4.7 69 141-239 7-75 (82)
13 1we8_A Tudor and KH domain con 98.4 2E-07 7E-12 74.2 5.3 73 139-239 13-85 (104)
14 1ec6_A RNA-binding protein NOV 98.4 9.2E-08 3.1E-12 73.6 2.1 73 140-239 2-74 (87)
15 1wvn_A Poly(RC)-binding protei 98.4 1.9E-07 6.6E-12 71.0 3.8 69 141-239 6-74 (82)
16 2p2r_A Poly(RC)-binding protei 98.4 1.4E-07 4.9E-12 70.7 2.9 69 141-239 5-73 (76)
17 2hh3_A KH-type splicing regula 98.4 2.2E-07 7.4E-12 74.8 3.8 68 142-239 12-79 (106)
18 2dgr_A Ring finger and KH doma 98.4 2.8E-07 9.7E-12 71.2 4.3 65 141-238 10-74 (83)
19 2cte_A Vigilin; K homology typ 98.3 3.7E-07 1.3E-11 71.5 4.5 67 141-239 17-83 (94)
20 1j5k_A Heterogeneous nuclear r 98.3 2.5E-07 8.4E-12 71.7 3.1 70 140-239 13-82 (89)
21 1vig_A Vigilin; RNA-binding pr 98.3 9.1E-07 3.1E-11 65.9 5.6 65 142-238 6-70 (71)
22 2axy_A Poly(RC)-binding protei 98.2 4.6E-07 1.6E-11 67.8 2.8 68 140-239 4-71 (73)
23 2ctm_A Vigilin; K homology typ 98.2 1.3E-06 4.6E-11 68.7 4.5 67 142-239 18-84 (95)
24 2ctk_A Vigilin; K homology typ 98.2 9.5E-07 3.2E-11 70.7 3.5 69 139-239 15-83 (104)
25 2ctl_A Vigilin; K homology typ 98.1 2.8E-06 9.6E-11 67.1 5.6 69 142-239 18-86 (97)
26 3krm_A Insulin-like growth fac 98.1 8.6E-07 3E-11 74.3 2.6 72 140-239 84-155 (163)
27 2jvz_A KH type-splicing, FAR u 97.9 1.6E-05 5.3E-10 66.2 6.6 71 142-240 3-73 (164)
28 1j4w_A FUSE binding protein; s 97.9 8.9E-06 3E-10 69.0 4.7 71 141-238 104-174 (174)
29 2jvz_A KH type-splicing, FAR u 97.8 1.5E-05 5.2E-10 66.3 3.8 67 143-239 93-159 (164)
30 2jzx_A Poly(RC)-binding protei 97.6 1.7E-05 5.7E-10 66.2 2.1 70 141-239 89-158 (160)
31 2jzx_A Poly(RC)-binding protei 97.6 2.7E-05 9.4E-10 64.8 3.3 68 139-238 3-70 (160)
32 1j4w_A FUSE binding protein; s 97.6 2.2E-05 7.7E-10 66.5 2.6 68 142-239 4-71 (174)
33 2ctj_A Vigilin; K homology typ 97.6 2.9E-05 1E-09 61.3 2.7 66 142-239 18-84 (95)
34 1tua_A Hypothetical protein AP 97.6 6.6E-05 2.2E-09 66.4 5.0 53 157-240 108-160 (191)
35 2anr_A Neuro-oncological ventr 97.5 3.1E-05 1.1E-09 65.7 1.9 71 141-239 104-174 (178)
36 2anr_A Neuro-oncological ventr 97.5 5.6E-05 1.9E-09 64.1 3.3 73 141-240 6-78 (178)
37 3krm_A Insulin-like growth fac 97.4 0.00011 3.6E-09 61.4 4.0 38 142-185 4-41 (163)
38 2e3u_A PH-DIM2P, hypothetical 97.4 0.00014 4.7E-09 65.4 4.7 53 157-240 139-191 (219)
39 2cpq_A FragIle X mental retard 97.2 0.00016 5.4E-09 57.2 3.0 64 142-239 16-80 (91)
40 3u1k_A Polyribonucleotide nucl 97.1 0.00028 9.6E-09 72.1 4.0 63 141-238 567-629 (630)
41 2qnd_A FMR1 protein; KH domain 95.7 0.0072 2.5E-07 50.4 3.7 71 143-239 69-141 (144)
42 2e3u_A PH-DIM2P, hypothetical 95.7 0.0052 1.8E-07 55.1 3.0 68 142-239 35-102 (219)
43 4aid_A Polyribonucleotide nucl 95.3 0.0045 1.5E-07 64.3 1.4 63 143-240 572-634 (726)
44 3n89_A Defective in GERM LINE 94.9 0.042 1.4E-06 53.1 6.7 73 140-237 29-103 (376)
45 2ctf_A Vigilin; K homology typ 94.2 0.092 3.1E-06 41.5 6.1 64 141-239 27-91 (102)
46 2qnd_A FMR1 protein; KH domain 93.5 0.035 1.2E-06 46.2 2.6 31 141-177 4-34 (144)
47 3v69_A Protein filia; RNA-bind 89.6 0.071 2.4E-06 45.2 0.2 30 154-183 63-92 (140)
48 3cdi_A Polynucleotide phosphor 88.1 0.095 3.2E-06 54.4 0.0 35 156-190 569-603 (723)
49 3n89_A Defective in GERM LINE 84.1 0.69 2.4E-05 44.6 3.7 62 157-238 196-259 (376)
50 1tua_A Hypothetical protein AP 82.0 0.3 1E-05 42.9 0.2 38 141-184 4-41 (191)
51 1e3p_A Guanosine pentaphosphat 68.6 0.62 2.1E-05 48.6 -1.6 38 145-188 602-639 (757)
52 2z0s_A Probable exosome comple 62.0 21 0.00071 31.6 7.2 68 156-250 157-224 (235)
53 2cxc_A NUSA; transcription ter 56.9 2.4 8.2E-05 35.7 0.1 28 157-184 46-73 (144)
54 1k0r_A NUSA; two component arr 30.8 11 0.00038 36.2 0.2 40 144-184 238-278 (366)
55 2asb_A Transcription elongatio 30.2 12 0.00041 34.3 0.3 34 151-184 121-155 (251)
56 1wjw_A Phosphoacetylglucosamin 29.4 1.4E+02 0.0049 23.2 6.5 51 167-237 45-96 (112)
57 3isp_A HTH-type transcriptiona 26.7 27 0.00094 29.6 1.9 20 168-187 40-59 (303)
58 3k5i_A Phosphoribosyl-aminoimi 25.1 1.5E+02 0.0053 27.3 7.0 50 170-235 350-399 (403)
59 1xao_A YDJ1, mitochondrial pro 22.1 81 0.0028 24.9 3.8 49 175-239 47-97 (121)
60 3iev_A GTP-binding protein ERA 21.3 22 0.00074 31.9 0.2 41 138-183 237-285 (308)
61 1hh2_P NUSA, N utilization sub 21.0 31 0.0011 32.7 1.3 34 151-184 240-274 (344)
62 3fzv_A Probable transcriptiona 20.2 27 0.00091 29.4 0.6 20 168-187 38-59 (306)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=100.00 E-value=2.6e-50 Score=342.71 Aligned_cols=129 Identities=48% Similarity=0.785 Sum_probs=126.3
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
+++|||||+++||+|||||+||||||+|+|+||++|||||+||||||+||+++|+.++|+++|+|++|||||+|++++++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHcCccCCCCCC
Q 022690 221 DIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLREESPS 269 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL~pv~e~~D~lKr~QL~ELA~lNGt~r~~~~~ 269 (293)
++|+++|++|+++|++||.|++|++|++|++||+|||+||||||+++++
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~ 130 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLK 130 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGS
T ss_pred hhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCccc
Confidence 9999999999999999999999999999999999999999999999877
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=100.00 E-value=7.8e-42 Score=287.11 Aligned_cols=124 Identities=43% Similarity=0.687 Sum_probs=108.8
Q ss_pred ceEEEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEec
Q 022690 138 VVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAE 217 (293)
Q Consensus 138 ~vk~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~ 217 (293)
..|+++|||||+++||+|||||+||||+|+|+|+||++|||||.|||+||+++.+++ . .+...|+|++|||||+|+++
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~-~-~~~~~~~~~~e~lhV~I~a~ 81 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVG-R-KDGQMLPGEDEPLHALVTAN 81 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSS-S-CCCCCSCCSSCCEEEEEEES
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCccccccccc-c-cccccccccCCCeEEEEEEC
Confidence 468899999999999999999999999999999999999999999999999997654 1 22345789999999999998
Q ss_pred CchhHHHHHHHHHHHHHHhccCC---CccchHHHHHHHHHHHHHHcCccCCCCC
Q 022690 218 FPEDIINSRLDHAVAILENLLKP---VDESLDHYKKQQLRELAMLNGTLREESP 268 (293)
Q Consensus 218 ~p~~~~~~rl~~A~e~Ie~LL~p---v~e~~D~lKr~QL~ELA~lNGt~r~~~~ 268 (293)
+++ ++++|+++|++||.+ +++++|++|++||+|||+||||||+++.
T Consensus 82 ~~e-----~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nGt~r~~~~ 130 (131)
T 1k1g_A 82 TME-----NVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN 130 (131)
T ss_dssp SHH-----HHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC----
T ss_pred CHH-----HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHcCcCCCcCC
Confidence 864 789999999999975 7899999999999999999999999864
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=6.4e-30 Score=211.90 Aligned_cols=103 Identities=26% Similarity=0.356 Sum_probs=91.8
Q ss_pred CceEEEEEEecCCC-CCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEE
Q 022690 137 PVVKRVIRLDVPVD-KYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVE 215 (293)
Q Consensus 137 ~~vk~~~Kv~IPv~-~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIs 215 (293)
.+..+++|||||++ .||+|||+|+||||+|+|+|+||++|||||.||||||++.+... -++++|||||+|+
T Consensus 8 ~~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~--------~~e~~e~l~V~I~ 79 (119)
T 2yqr_A 8 GMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPAS--------GREAFEPMYIYIS 79 (119)
T ss_dssp CCSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTT--------SSCCSSBCEEEEE
T ss_pred CeeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCcccccccc--------ccccCCCcEEEEE
Confidence 34568999999999 69999999999999999999999999999999999999854321 2368999999999
Q ss_pred ecCchhHHHHHHHHHHHHHHhccCCCccchHHHHHHH
Q 022690 216 AEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQ 252 (293)
Q Consensus 216 a~~p~~~~~~rl~~A~e~Ie~LL~pv~e~~D~lKr~Q 252 (293)
+.+++ .+++|+++|++||.++.+.++.+|++|
T Consensus 80 a~~~e-----~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 80 HPKPE-----GLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp ESSHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCHH-----HHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence 99865 689999999999999999999999776
No 4
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=99.05 E-value=1.4e-10 Score=85.49 Aligned_cols=38 Identities=34% Similarity=0.529 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHhc
Q 022690 33 ERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGY 70 (293)
Q Consensus 33 ~~YL~eLl~Ek~~L~~~~~vf~h~~rLL~~EI~RV~~~ 70 (293)
.+||++||+||.+|..|+++|.|+.|||++||+||+..
T Consensus 7 ~eYL~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR~~ 44 (60)
T 3k6t_A 7 VEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVA 44 (60)
T ss_dssp HHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999986
No 5
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=99.03 E-value=8.6e-11 Score=85.16 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhcCCccc---chhHHHHHHHHHHHHHHhc
Q 022690 33 ERYLAELLAERQKLGPFVQ---VLPLCSRLLSQEIRRITGY 70 (293)
Q Consensus 33 ~~YL~eLl~Ek~~L~~~~~---vf~h~~rLL~~EI~RV~~~ 70 (293)
.+||++||+||.+|+.|++ +|.|++|||++||.||+..
T Consensus 4 ~eYL~qLlkdkk~l~~~Pn~~~iF~H~eRLldEEI~rVR~~ 44 (56)
T 4dnn_A 4 PDYLMQLMNDKKLMSSLPNFSGIFNHLERLLDEEISRVRKD 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999888 9999999999999999986
No 6
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=98.94 E-value=1e-09 Score=74.87 Aligned_cols=36 Identities=36% Similarity=0.631 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHh
Q 022690 31 DRERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITG 69 (293)
Q Consensus 31 ~~~~YL~eLl~Ek~~L~~~~~vf~h~~rLL~~EI~RV~~ 69 (293)
+.++||.||++||.+|+|. |.||.|||++||.|+++
T Consensus 5 ~~~kyLpeL~aEk~sLdPs---f~Ha~RLl~~EIek~qk 40 (41)
T 2xa6_A 5 PENKYLPELMAEKDSLDPS---FTHAMQLLTAEIEKIQK 40 (41)
T ss_dssp CHHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCch---HHHHHHHHHHHHHHHHc
Confidence 4579999999999999994 69999999999999986
No 7
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.78 E-value=8.6e-09 Score=79.18 Aligned_cols=71 Identities=17% Similarity=0.358 Sum_probs=56.7
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
.+.+|.||. +++|+|||++|.|+|+|+++|||+|.|...|+.. ...+-+|.|++ +++
T Consensus 14 ~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~----------------~~~er~v~I~G-~~~ 70 (85)
T 2opv_A 14 TVQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN----------------TNVDKPLRIIG-DPY 70 (85)
T ss_dssp EEEEEEECT------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS----------------TTSCEEEEEEE-CHH
T ss_pred EEEEEEeCh------hheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC----------------CCCceEEEEEe-CHH
Confidence 346788885 4899999999999999999999999998755421 13455799998 654
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022690 221 DIINSRLDHAVAILENLLK 239 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL~ 239 (293)
.+++|+++|++++.
T Consensus 71 -----~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 71 -----KVQQACEMVMDILR 84 (85)
T ss_dssp -----HHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHhc
Confidence 67899999998874
No 8
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.69 E-value=2e-08 Score=75.02 Aligned_cols=73 Identities=25% Similarity=0.417 Sum_probs=56.3
Q ss_pred EEEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022690 140 KRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 219 (293)
Q Consensus 140 k~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p 219 (293)
|.+.++.||. +++|+|||++|.|+|+|+++|||+|.|...+...+ -...-.|.|++. +
T Consensus 2 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~---------------~~~~~~v~I~G~-~ 59 (76)
T 1dtj_A 2 KELVEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP---------------GTRNRRVTITGS-P 59 (76)
T ss_dssp CEEEEEEEET------TTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCST---------------TCCEEEEEEEES-H
T ss_pred ceEEEEEECh------HHcceEECCCchHHHHHHHHhCCEEEECcCCCCCC---------------CCceeEEEEEeC-H
Confidence 4567888985 47999999999999999999999999976432111 123457888875 3
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022690 220 EDIINSRLDHAVAILENLLK 239 (293)
Q Consensus 220 ~~~~~~rl~~A~e~Ie~LL~ 239 (293)
+ .+++|+++|++++.
T Consensus 60 ~-----~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 60 A-----ATQAAQYLISQRVT 74 (76)
T ss_dssp H-----HHHHHHHHHHHHCC
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 3 67899999999875
No 9
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.62 E-value=3.2e-08 Score=77.48 Aligned_cols=73 Identities=14% Similarity=0.322 Sum_probs=57.6
Q ss_pred EEEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022690 140 KRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 219 (293)
Q Consensus 140 k~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p 219 (293)
..+.+|.||.+ ++|+|||++|.|+|+|+++|||+|.|-..|... ...+-.|.|++ ++
T Consensus 14 ~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~----------------~~~~r~v~I~G-~~ 70 (94)
T 1x4m_A 14 NAVQEIMIPAS------KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN----------------TGADKPLRITG-DP 70 (94)
T ss_dssp CEEEEEEECHH------HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS----------------SCSCEEEEEEE-CT
T ss_pred cEEEEEEEChh------hcceEECCCCHHHHHHHHHHCCeEEecCCCCCC----------------CCCceEEEEEe-CH
Confidence 34677889854 899999999999999999999999997644321 12445788998 54
Q ss_pred hhHHHHHHHHHHHHHHhccCC
Q 022690 220 EDIINSRLDHAVAILENLLKP 240 (293)
Q Consensus 220 ~~~~~~rl~~A~e~Ie~LL~p 240 (293)
+ .+++|+++|+++|..
T Consensus 71 ~-----~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 71 Y-----KVQQAKEMVLELIRD 86 (94)
T ss_dssp T-----THHHHHHHHHHHHCC
T ss_pred H-----HHHHHHHHHHHHHhc
Confidence 4 578999999999874
No 10
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.50 E-value=8.4e-08 Score=74.83 Aligned_cols=70 Identities=20% Similarity=0.394 Sum_probs=54.5
Q ss_pred EEEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022690 140 KRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 219 (293)
Q Consensus 140 k~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p 219 (293)
..+.+|.||. +++|+|||++|.|+|+|+++|||+|.|..... -..+-.|.|++. +
T Consensus 14 ~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~------------------g~~~r~v~I~G~-~ 68 (92)
T 1x4n_A 14 VMTEEYKVPD------GMVGFIIGRGGEQISRIQQESGCKIQIAPDSG------------------GLPERSCMLTGT-P 68 (92)
T ss_dssp CEEEEEEEEH------HHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT------------------TCSEEEEEEEEC-H
T ss_pred CEEEEEEECh------HHcceeECCCchHHHHHHHHhCCEEEEcCCCC------------------CCCccEEEEEeC-H
Confidence 3567788885 48999999999999999999999999976421 012346888875 4
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022690 220 EDIINSRLDHAVAILENLLK 239 (293)
Q Consensus 220 ~~~~~~rl~~A~e~Ie~LL~ 239 (293)
+ .+++|+++|++++.
T Consensus 69 e-----~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 69 E-----SVQSAKRLLDQIVE 83 (92)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 3 57889999998875
No 11
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.46 E-value=1.4e-07 Score=75.64 Aligned_cols=72 Identities=18% Similarity=0.305 Sum_probs=54.3
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchh
Q 022690 142 VIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPED 221 (293)
Q Consensus 142 ~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~ 221 (293)
+.+|.||. +++|+|||++|.|+|+|+++|||+|.|.....- . ....+=.|.|++ +++
T Consensus 8 ~~~i~IP~------~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~-------------~--~~~~~r~V~I~G-~~e- 64 (107)
T 2hh2_A 8 EMTFSIPT------HKCGLVIGRGGENVKAINQQTGAFVEISRQLPP-------------N--GDPNFKLFIIRG-SPQ- 64 (107)
T ss_dssp CEEEEEEG------GGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT-------------T--CCTTEEEEEEES-CHH-
T ss_pred eEEEEECH------HHcCccCCCCcHHHHHHHHHhCCEEEEcCccCC-------------C--CCCCceEEEEEC-CHH-
Confidence 46788875 489999999999999999999999999763210 0 011234678887 543
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 022690 222 IINSRLDHAVAILENLLKP 240 (293)
Q Consensus 222 ~~~~rl~~A~e~Ie~LL~p 240 (293)
.+++|+++|+++|.-
T Consensus 65 ----~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 65 ----QIDHAKQLIEEKIEG 79 (107)
T ss_dssp ----HHHHHHHHHHHHSCS
T ss_pred ----HHHHHHHHHHHHHhc
Confidence 678999999999873
No 12
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.44 E-value=1.6e-07 Score=71.60 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=53.3
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
.+.+|.||.+ ++|+|||++|.++|+|+++|||+|.|...- + ...+=.|.|++. ++
T Consensus 7 ~~~~i~Vp~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~--------------~----~~~~~~v~I~G~-~~ 61 (82)
T 1zzk_A 7 ITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEPL--------------E----GSEDRIITITGT-QD 61 (82)
T ss_dssp EEEEEEEETT------TGGGGTCGGGHHHHHHHHHHCCEEEECCTT--------------S----CSSEEEEEEEEC-HH
T ss_pred EEEEEEEChH------hcCeeECCCchHHHHHHHHHCCEEEEcCCC--------------C----CCCceEEEEEeC-HH
Confidence 4577889864 799999999999999999999999996420 0 012347888883 43
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022690 221 DIINSRLDHAVAILENLLK 239 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL~ 239 (293)
.+++|+++|++++.
T Consensus 62 -----~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 62 -----QIQNAQYLLQNSVK 75 (82)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 57889999998875
No 13
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.43 E-value=2e-07 Score=74.16 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=56.7
Q ss_pred eEEEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecC
Q 022690 139 VKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEF 218 (293)
Q Consensus 139 vk~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~ 218 (293)
..++.+|.||.+ ++|+|||++|.|+|+|+++|||+|.|-...... ..++=.|.|++..
T Consensus 13 ap~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~----------------~~~~~~V~I~G~~ 70 (104)
T 1we8_A 13 TPVFEQLSVPQR------SVGRIIGRGGETIRSICKASGAKITCDKESEGT----------------LLLSRLIKISGTQ 70 (104)
T ss_dssp CEEEEEEEEETT------THHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS----------------SSSEEEEEEEEEH
T ss_pred CCEEEEEEEChh------heeeeECCCCHHHHHHHHHHCCEEEEecCCCCC----------------CCCcceEEEEcCH
Confidence 445678999854 899999999999999999999999997542210 1234578888854
Q ss_pred chhHHHHHHHHHHHHHHhccC
Q 022690 219 PEDIINSRLDHAVAILENLLK 239 (293)
Q Consensus 219 p~~~~~~rl~~A~e~Ie~LL~ 239 (293)
. .+++|+++|+.++.
T Consensus 71 ~------~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 71 K------EVAAAKHLILEKVS 85 (104)
T ss_dssp H------HHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHh
Confidence 2 47899999999986
No 14
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.38 E-value=9.2e-08 Score=73.57 Aligned_cols=73 Identities=25% Similarity=0.417 Sum_probs=55.3
Q ss_pred EEEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022690 140 KRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 219 (293)
Q Consensus 140 k~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p 219 (293)
|.+.+|.||. +++|+|||++|.|+|+|+++|||+|.|-..+.... -...=.|.|++. +
T Consensus 2 k~t~~i~IP~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~---------------g~~~r~v~I~G~-~ 59 (87)
T 1ec6_A 2 KELVEIAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP---------------GTRNRRVTITGS-P 59 (87)
T ss_dssp CSEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBST---------------TSCEEEEEEESS-H
T ss_pred ceEEEEEECh------HHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCC---------------CCCceEEEEEcC-H
Confidence 4467788875 48999999999999999999999999976432111 013346888775 3
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022690 220 EDIINSRLDHAVAILENLLK 239 (293)
Q Consensus 220 ~~~~~~rl~~A~e~Ie~LL~ 239 (293)
+ .++.|+++|++++.
T Consensus 60 ~-----~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 60 A-----ATQAAQYLISQRVT 74 (87)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 3 57899999999986
No 15
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.38 E-value=1.9e-07 Score=71.03 Aligned_cols=69 Identities=17% Similarity=0.330 Sum_probs=54.5
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
.+.+|.||. +++|.|||++|.++|+|+++|||+|.|-... + ...+=.|.|++..
T Consensus 6 ~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~---~---------------~~~~r~v~I~G~~-- 59 (82)
T 1wvn_A 6 TTHELTIPN------NLIGCIIGRQGANINEIRQMSGAQIKIANPV---E---------------GSSGRQVTITGSA-- 59 (82)
T ss_dssp EEEEEEEEG------GGHHHHHCGGGHHHHHHHHHHCCEEEECCCC---T---------------TCSEEEEEEEECH--
T ss_pred EEEEEEEch------HhccceeCCCchhHHHHHHHhCCEEEEecCC---C---------------CCCceEEEEEcCH--
Confidence 456788875 4899999999999999999999999997521 0 1234478888753
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022690 221 DIINSRLDHAVAILENLLK 239 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL~ 239 (293)
..+++|+++|++++.
T Consensus 60 ----~~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 60 ----ASISLAQYLINARLS 74 (82)
T ss_dssp ----HHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHHHH
Confidence 267899999999987
No 16
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.38 E-value=1.4e-07 Score=70.66 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=54.4
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
.+.+|.||. +++|.|||++|.++|+|+++|||+|.|-.. . + ...+=.|.|++. ++
T Consensus 5 ~~~~i~Ip~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~----~----------~----~~~~~~v~I~G~-~~ 59 (76)
T 2p2r_A 5 TSHELTIPN------DLIGCIIGRQGAKINEIRQMSGAQIKIANP----V----------E----GSTDRQVTITGS-AA 59 (76)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCC----C----------T----TCSEEEEEEEEC-HH
T ss_pred eEEEEEECh------HHcceEECCCChHHHHHHHHHCCEEEEcCC----C----------C----CCCeEEEEEEeC-HH
Confidence 457788875 489999999999999999999999999752 0 0 123447888885 43
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022690 221 DIINSRLDHAVAILENLLK 239 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL~ 239 (293)
.+++|+++|+++|.
T Consensus 60 -----~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 60 -----SISLAQYLINVRLS 73 (76)
T ss_dssp -----HHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHH
Confidence 57899999999886
No 17
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.36 E-value=2.2e-07 Score=74.84 Aligned_cols=68 Identities=24% Similarity=0.434 Sum_probs=52.6
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchh
Q 022690 142 VIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPED 221 (293)
Q Consensus 142 ~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~ 221 (293)
+.+|.||.+ ++|+|||+.|.|+|+|+++|||+|.|.-.+. .+.+-.|.|++. ++
T Consensus 12 ~~~i~Ip~~------~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~------------------~~~er~V~I~G~-~e- 65 (106)
T 2hh3_A 12 GIDVPVPRH------SVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG------------------TGPEKIAHIMGP-PD- 65 (106)
T ss_dssp CEEEEEETT------THHHHHTTTTHHHHHHHHHHTCEEEECSSCS------------------SSSEEEEEEESS-HH-
T ss_pred EEEEEECHH------HcCccCCCCcHHHHHHHHHHCcEEEEecCCC------------------CCceeEEEEEeC-HH-
Confidence 467888754 7899999999999999999999999964211 123447888875 32
Q ss_pred HHHHHHHHHHHHHHhccC
Q 022690 222 IINSRLDHAVAILENLLK 239 (293)
Q Consensus 222 ~~~~rl~~A~e~Ie~LL~ 239 (293)
.+++|+++|++++.
T Consensus 66 ----~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 66 ----RCEHAARIINDLLQ 79 (106)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHh
Confidence 57899999999875
No 18
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=2.8e-07 Score=71.23 Aligned_cols=65 Identities=31% Similarity=0.536 Sum_probs=50.0
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
.+.+|.||. +++|.|||++|.|+|+||++|||+|.|-.++ +++ .|.|++.. +
T Consensus 10 ~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--------------------~~~-~v~ItG~~-e 61 (83)
T 2dgr_A 10 TTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--------------------KEP-VFAVTGMP-E 61 (83)
T ss_dssp EEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--------------------SCC-EEEEEECT-T
T ss_pred eEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCC--------------------CCC-eEEEEcCH-H
Confidence 456788873 7999999999999999999999999995421 122 47777754 3
Q ss_pred hHHHHHHHHHHHHHHhcc
Q 022690 221 DIINSRLDHAVAILENLL 238 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL 238 (293)
.+++|+++|++++
T Consensus 62 -----~v~~A~~~I~~~i 74 (83)
T 2dgr_A 62 -----NVDRAREEIEAHI 74 (83)
T ss_dssp -----THHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 4678999998864
No 19
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.33 E-value=3.7e-07 Score=71.50 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=52.6
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
.+..|.||.+ ++|.|||++|.|+|+|+++|||+|.|-..++ +.=.|.|++. ++
T Consensus 17 ~t~~i~Ip~~------~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~--------------------~~~~V~I~G~-~e 69 (94)
T 2cte_A 17 ASATVAIPKE------HHRFVIGKNGEKLQDLELKTATKIQIPRPDD--------------------PSNQIKITGT-KE 69 (94)
T ss_dssp EEEEEECCTT------THHHHHCSSSCHHHHHHHHTTCCCBCCCTTS--------------------SCCEEEEEEC-HH
T ss_pred eEEEEEEChH------HeeeeECCCChhHHHHHHHHCCEEEeCCCCC--------------------CCCeEEEEEC-HH
Confidence 4678889855 7899999999999999999999999953211 1237889886 43
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022690 221 DIINSRLDHAVAILENLLK 239 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL~ 239 (293)
.+++|+++|+.++.
T Consensus 70 -----~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 70 -----GIEKARHEVLLISA 83 (94)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhh
Confidence 57889999988764
No 20
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.32 E-value=2.5e-07 Score=71.66 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=53.5
Q ss_pred EEEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022690 140 KRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 219 (293)
Q Consensus 140 k~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p 219 (293)
+.+.+|.||. +++|+|||++|.|+|+|+++|||+|.|...- + ...+=.|.|++. +
T Consensus 13 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~--------------~----~~~~~~v~I~G~-~ 67 (89)
T 1j5k_A 13 IITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEPL--------------E----GSEDRIITITGT-Q 67 (89)
T ss_dssp EEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHTCCEEEECSCC--------------S----SSSEEEEEEEEE-H
T ss_pred eEEEEEEECh------hhcceeECCCCHhHHHHHHHhCCeEEecCCC--------------C----CCCccEEEEEcC-H
Confidence 4567888885 4899999999999999999999999996410 0 012336888875 3
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022690 220 EDIINSRLDHAVAILENLLK 239 (293)
Q Consensus 220 ~~~~~~rl~~A~e~Ie~LL~ 239 (293)
+ .+++|+++|++++.
T Consensus 68 e-----~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 68 D-----QIQNAQYLLQNSVK 82 (89)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 3 57889999998875
No 21
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.29 E-value=9.1e-07 Score=65.91 Aligned_cols=65 Identities=17% Similarity=0.341 Sum_probs=50.3
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchh
Q 022690 142 VIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPED 221 (293)
Q Consensus 142 ~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~ 221 (293)
+..+.||. .++|+||||+|.++|+|+++|||+|.|--.|. .+=-|.|++. ++
T Consensus 6 ~~~i~I~~------~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~--------------------~~~~V~I~G~-~~- 57 (71)
T 1vig_A 6 YVEINIDH------KFHRHLIGKSGANINRIKDQYKVSVRIPPDSE--------------------KSNLIRIEGD-PQ- 57 (71)
T ss_dssp EEEEEECS------SHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS--------------------SSEEEEEEES-SH-
T ss_pred EEEEEECH------HHhhhhcCCCCccHHHHHHHHCCEEEECCCCC--------------------cccEEEEEcC-HH-
Confidence 35567763 48999999999999999999999999965432 0116888886 33
Q ss_pred HHHHHHHHHHHHHHhcc
Q 022690 222 IINSRLDHAVAILENLL 238 (293)
Q Consensus 222 ~~~~rl~~A~e~Ie~LL 238 (293)
.+++|+++|+.++
T Consensus 58 ----~v~~A~~~I~~i~ 70 (71)
T 1vig_A 58 ----GVQQAKRELLELA 70 (71)
T ss_dssp ----HHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHh
Confidence 5789999999875
No 22
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.23 E-value=4.6e-07 Score=67.78 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=53.1
Q ss_pred EEEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022690 140 KRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 219 (293)
Q Consensus 140 k~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p 219 (293)
....++.||. +.+|.|||++|.++|+|+++|||+|.|-..|+ .+=-|.|++. +
T Consensus 4 ~~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~--------------------~er~v~I~G~-~ 56 (73)
T 2axy_A 4 TLTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC--------------------PERIITLAGP-T 56 (73)
T ss_dssp CEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC--------------------SEEEEEEEEC-H
T ss_pred eEEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCCC--------------------CcEEEEEEeC-H
Confidence 3467788874 58999999999999999999999999975421 1225788876 4
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022690 220 EDIINSRLDHAVAILENLLK 239 (293)
Q Consensus 220 ~~~~~~rl~~A~e~Ie~LL~ 239 (293)
+ .+.+|+++|.++|.
T Consensus 57 ~-----~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 57 N-----AIFKAFAMIIDKLE 71 (73)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 3 57889999988774
No 23
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.17 E-value=1.3e-06 Score=68.75 Aligned_cols=67 Identities=21% Similarity=0.356 Sum_probs=51.0
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchh
Q 022690 142 VIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPED 221 (293)
Q Consensus 142 ~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~ 221 (293)
+..+.||.+ ++|+||||+|.|+|+|+++|||+|.|-..|+. .+=.|.|++. ++
T Consensus 18 t~~i~Ip~~------~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~-------------------~~~~V~I~G~-~e- 70 (95)
T 2ctm_A 18 SEDVPLDHR------VHARIIGARGKAIRKIMDEFKVDIRFPQSGAP-------------------DPNCVTVTGL-PE- 70 (95)
T ss_dssp CEEEECCTT------THHHHHCSSSCHHHHHHHHHTCEEECCCTTCS-------------------CTTEEEEESC-HH-
T ss_pred EEEEEECHH------HccccCCCCcchHHHHHHHHCCeEEecCCCCC-------------------CCcEEEEEcC-HH-
Confidence 466888755 68999999999999999999999999654431 1236888875 33
Q ss_pred HHHHHHHHHHHHHHhccC
Q 022690 222 IINSRLDHAVAILENLLK 239 (293)
Q Consensus 222 ~~~~rl~~A~e~Ie~LL~ 239 (293)
.+++|+++|+.|+.
T Consensus 71 ----~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 71 ----NVEEAIDHILNLEE 84 (95)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
Confidence 46778888887753
No 24
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.17 E-value=9.5e-07 Score=70.70 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=54.4
Q ss_pred eEEEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecC
Q 022690 139 VKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEF 218 (293)
Q Consensus 139 vk~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~ 218 (293)
+..+..|.||. .++|+|||++|.|+|+|+++|||+|.|--.|+ ++=.|.|++..
T Consensus 15 ap~~~~i~Ip~------~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~--------------------~~~~V~I~G~~ 68 (104)
T 2ctk_A 15 VPVTIEVEVPF------DLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL--------------------QSDIIAITGLA 68 (104)
T ss_dssp SCEEEEEECCH------HHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT--------------------TCCEEEEEECH
T ss_pred CCEEEEEEECh------HHccceeCCCchHHHHHHHHHCCEEEecCCCC--------------------CcceEEEEcCH
Confidence 34667888874 48999999999999999999999999965433 01178898863
Q ss_pred chhHHHHHHHHHHHHHHhccC
Q 022690 219 PEDIINSRLDHAVAILENLLK 239 (293)
Q Consensus 219 p~~~~~~rl~~A~e~Ie~LL~ 239 (293)
+ .+++|+++|+.++.
T Consensus 69 -e-----~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 69 -A-----NLDRAKAGLLERVK 83 (104)
T ss_dssp -H-----HHHHHHHHHHHHHH
T ss_pred -H-----HHHHHHHHHHHHHh
Confidence 2 57899999999875
No 25
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.14 E-value=2.8e-06 Score=67.07 Aligned_cols=69 Identities=7% Similarity=0.206 Sum_probs=51.8
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchh
Q 022690 142 VIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPED 221 (293)
Q Consensus 142 ~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~ 221 (293)
+..|.||.+ ++|+|||++|.|+|+|+++|||+|.|--.|... ...=.|.|++. ++
T Consensus 18 ~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~-----------------~~~~~V~I~G~-~e- 72 (97)
T 2ctl_A 18 KLSVTVDPK------YHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGN-----------------QPQDQITITGY-EK- 72 (97)
T ss_dssp EEEEECCTT------THHHHSCSSSCHHHHHHHHHTCEEECCCTTTCS-----------------SCSSEEEEESC-HH-
T ss_pred eEEEEECHH------HhhhcCCCCchhHHHHHHHHCCEEEecCCCCCC-----------------CCccEEEEEeC-HH-
Confidence 466788744 789999999999999999999999996544210 12336888875 33
Q ss_pred HHHHHHHHHHHHHHhccC
Q 022690 222 IINSRLDHAVAILENLLK 239 (293)
Q Consensus 222 ~~~~rl~~A~e~Ie~LL~ 239 (293)
.+.+|+++|+.++.
T Consensus 73 ----~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 73 ----NTEAARDAILRIVG 86 (97)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
Confidence 46788888888764
No 26
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.12 E-value=8.6e-07 Score=74.26 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=56.3
Q ss_pred EEEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022690 140 KRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 219 (293)
Q Consensus 140 k~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p 219 (293)
..+.++.||. +++|+|||++|.++|+|+++|||+|.|-..+. | ..++.-.|.|++ ++
T Consensus 84 ~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~-------------~---~~~~~~~v~I~G-~~ 140 (163)
T 3krm_A 84 KLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT-------------P---DENDQVIVKIIG-HF 140 (163)
T ss_dssp CEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC-------------C---CTTSEEEEEEEE-CH
T ss_pred ceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCC-------------C---CCCCceEEEEEe-CH
Confidence 3456788873 68999999999999999999999999976443 1 123444788988 44
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022690 220 EDIINSRLDHAVAILENLLK 239 (293)
Q Consensus 220 ~~~~~~rl~~A~e~Ie~LL~ 239 (293)
+ .++.|.++|+++|.
T Consensus 141 ~-----~v~~A~~~I~~~i~ 155 (163)
T 3krm_A 141 Y-----ASQMAQRKIRDILA 155 (163)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 3 57899999999986
No 27
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.92 E-value=1.6e-05 Score=66.24 Aligned_cols=71 Identities=17% Similarity=0.347 Sum_probs=53.3
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchh
Q 022690 142 VIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPED 221 (293)
Q Consensus 142 ~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~ 221 (293)
+.++.||.+ ++|+|||++|.|+|+|+++|||+|.|--.+.. + ...+-.|.|++ +++
T Consensus 3 ~~~~~Vp~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~------------~----~~~~r~v~I~G-~~~- 58 (164)
T 2jvz_A 3 VQEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ------------N----TNVDKPLRIIG-DPY- 58 (164)
T ss_dssp EEEEEECTT------CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS------------S----SSSCEEEEEEE-CHH-
T ss_pred EEEEEechh------heeEEECCChHHHHHHHHHhCCeEEEecCCCC------------C----CCCceEEEEEc-CHH-
Confidence 467888754 69999999999999999999999999532210 0 12334678887 332
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 022690 222 IINSRLDHAVAILENLLKP 240 (293)
Q Consensus 222 ~~~~rl~~A~e~Ie~LL~p 240 (293)
.+.+|+.+|.+++..
T Consensus 59 ----~v~~A~~~I~~ii~e 73 (164)
T 2jvz_A 59 ----KVQQACEMVMDILRE 73 (164)
T ss_dssp ----HHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHHHHHHHh
Confidence 578899999998874
No 28
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.90 E-value=8.9e-06 Score=68.97 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=52.2
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
.+.+|.||. +++|+|||++|.|+|+|+++|||+|.|-...... . ...+=.|.|++ +++
T Consensus 104 ~~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~--------------~-~~~~~~v~I~G-~~~ 161 (174)
T 1j4w_A 104 QEFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQRNPPPN--------------A-DPNMKLFTIRG-TPQ 161 (174)
T ss_dssp CEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTT--------------S-CTTEEEEEEEC-CHH
T ss_pred EEEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECCCCCCC--------------C-CCCceEEEEEC-CHH
Confidence 356788873 5799999999999999999999999998642110 0 11223577777 432
Q ss_pred hHHHHHHHHHHHHHHhcc
Q 022690 221 DIINSRLDHAVAILENLL 238 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL 238 (293)
.+++|+++|+++|
T Consensus 162 -----~v~~A~~~I~~~i 174 (174)
T 1j4w_A 162 -----QIDYARQLIEEKI 174 (174)
T ss_dssp -----HHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHhC
Confidence 6789999998875
No 29
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.76 E-value=1.5e-05 Score=66.28 Aligned_cols=67 Identities=24% Similarity=0.455 Sum_probs=50.6
Q ss_pred EEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchhH
Q 022690 143 IRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDI 222 (293)
Q Consensus 143 ~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~~ 222 (293)
.+|.|| -+++|+|||++|.|+|+|+++|||+|.|-.... ...+=.|.|++. ++
T Consensus 93 ~~i~vp------~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~------------------~~~~~~v~I~G~-~~-- 145 (164)
T 2jvz_A 93 IDVPVP------RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG------------------TGPEKIAHIMGP-PD-- 145 (164)
T ss_dssp BCCEEE------TTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT------------------TSSEEEEEEESC-HH--
T ss_pred EEEEEC------hhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC------------------CCCcEEEEEEcC-HH--
Confidence 345666 358999999999999999999999999975321 012346778774 33
Q ss_pred HHHHHHHHHHHHHhccC
Q 022690 223 INSRLDHAVAILENLLK 239 (293)
Q Consensus 223 ~~~rl~~A~e~Ie~LL~ 239 (293)
.++.|+++|+++|.
T Consensus 146 ---~v~~A~~~I~~~i~ 159 (164)
T 2jvz_A 146 ---RCEHAARIINDLLQ 159 (164)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHh
Confidence 57889999998875
No 30
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.63 E-value=1.7e-05 Score=66.19 Aligned_cols=70 Identities=20% Similarity=0.347 Sum_probs=52.6
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
.+.++.||. +++|+|||++|.++|+|+++|||+|.|.+... | ...+=.|.|++ +++
T Consensus 89 ~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~-------------~----~~~~~~v~I~G-~~~ 144 (160)
T 2jzx_A 89 VTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDML-------------P----NSTERAITIAG-IPQ 144 (160)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCCS-------------T----TCCEEEEEEEE-CHH
T ss_pred EEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCCC-------------C----CCCceEEEEEc-CHH
Confidence 457788873 68999999999999999999999999975210 1 12334688888 443
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022690 221 DIINSRLDHAVAILENLLK 239 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL~ 239 (293)
.+++|+++|.++|.
T Consensus 145 -----~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 145 -----SIIECVKQICVVML 158 (160)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 57889988887763
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.62 E-value=2.7e-05 Score=64.84 Aligned_cols=68 Identities=24% Similarity=0.317 Sum_probs=50.2
Q ss_pred eEEEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecC
Q 022690 139 VKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEF 218 (293)
Q Consensus 139 vk~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~ 218 (293)
+.++.++.||. ..+|.|||++|.++|+|+++|||+|.|-..|+ .+-.|.|++.
T Consensus 3 ~~~~~~~~vp~------~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~--------------------~~r~v~I~G~- 55 (160)
T 2jzx_A 3 VTLTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC--------------------PERIITLAGP- 55 (160)
T ss_dssp CEEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT--------------------TEEEEEEEEE-
T ss_pred ccEEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEcCCCC--------------------CceEEEEEeC-
Confidence 45677888874 48999999999999999999999999975321 1235777775
Q ss_pred chhHHHHHHHHHHHHHHhcc
Q 022690 219 PEDIINSRLDHAVAILENLL 238 (293)
Q Consensus 219 p~~~~~~rl~~A~e~Ie~LL 238 (293)
++ .+.+|..+|.+++
T Consensus 56 ~~-----~v~~A~~~I~~~i 70 (160)
T 2jzx_A 56 TN-----AIFKAFAMIIDKL 70 (160)
T ss_dssp HH-----HHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHH
Confidence 22 4566777666554
No 32
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.61 E-value=2.2e-05 Score=66.48 Aligned_cols=68 Identities=24% Similarity=0.458 Sum_probs=51.2
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchh
Q 022690 142 VIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPED 221 (293)
Q Consensus 142 ~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~ 221 (293)
+.++.||. +++|+|||++|.++|+|+++|||+|.|-.. +. ...+-.|.|++. +
T Consensus 4 ~~~~~vp~------~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~----~~--------------~~~~r~v~I~G~-~-- 56 (174)
T 1j4w_A 4 MIDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPD----DG--------------TTPERIAQITGP-P-- 56 (174)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEECC----TT--------------SCSEEEEEEEEC-H--
T ss_pred EEEEEECh------hheeeeecCCchHHHHHHHHhCCEEEEecC----CC--------------CCCccEEEEEeC-H--
Confidence 45677874 489999999999999999999999999632 10 112346778775 3
Q ss_pred HHHHHHHHHHHHHHhccC
Q 022690 222 IINSRLDHAVAILENLLK 239 (293)
Q Consensus 222 ~~~~rl~~A~e~Ie~LL~ 239 (293)
+.+.+|+++|.+++.
T Consensus 57 ---~~v~~A~~~I~~~~~ 71 (174)
T 1j4w_A 57 ---DRAQHAAEIITDLLR 71 (174)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 257889999988875
No 33
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.57 E-value=2.9e-05 Score=61.26 Aligned_cols=66 Identities=14% Similarity=0.287 Sum_probs=50.2
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhh-CCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 142 VIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMT-ECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 142 ~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eT-gcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
+..|.||.+ +++.||||+|.++|+|+++| ||+|.|--.|+. .=.|.|.+.+.
T Consensus 18 t~~i~Ip~~------~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~--------------------~~~V~I~G~~~- 70 (95)
T 2ctj_A 18 EVEVSIPAK------LHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG--------------------SDTVVIRGPSS- 70 (95)
T ss_dssp CEEEECCHH------HHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTT--------------------CCEEEEESCHH-
T ss_pred EEEEEECHH------HHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCC--------------------cceEEEEcCHH-
Confidence 355778754 78899999999999999999 999988544431 11588877542
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022690 221 DIINSRLDHAVAILENLLK 239 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL~ 239 (293)
.+++|+++|+.++.
T Consensus 71 -----~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 71 -----DVEKAKKQLLHLAE 84 (95)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 57889999988864
No 34
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.56 E-value=6.6e-05 Score=66.40 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=43.2
Q ss_pred eeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHHHh
Q 022690 157 FVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILEN 236 (293)
Q Consensus 157 fvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~~~~~rl~~A~e~Ie~ 236 (293)
.+|||||+.|.|+|.||..|||+|.|-|+ .|.|.+. + ..++.|...|++
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-------------------------~v~i~G~-~-----~~i~~Ar~~i~~ 156 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGEY-------------------------EVAIIGD-Y-----ERAMAAKQAIEM 156 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSS-------------------------EEEEEEE-H-----HHHHHHHHHHHH
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcCC-------------------------EEEEEeC-h-----HHHHHHHHHHHH
Confidence 68999999999999999999999999652 3455442 2 357889999999
Q ss_pred ccCC
Q 022690 237 LLKP 240 (293)
Q Consensus 237 LL~p 240 (293)
|+.-
T Consensus 157 li~g 160 (191)
T 1tua_A 157 LAEG 160 (191)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 9874
No 35
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.48 E-value=3.1e-05 Score=65.71 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=52.6
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
.+.++.||. +++|+|||++|.++|+|+++|||+|.|-..... + ...+=.|.|++..
T Consensus 104 ~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~------------~----~~~~~~v~I~G~~-- 159 (178)
T 2anr_A 104 NQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG------------I----NLQNRVVTVSGEP-- 159 (178)
T ss_dssp GEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCCC--------------------CCEEEEEEESSH--
T ss_pred eEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCCCCC------------C----CCCceEEEEEcCH--
Confidence 356788874 589999999999999999999999999653210 0 0122357777643
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022690 221 DIINSRLDHAVAILENLLK 239 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL~ 239 (293)
..+++|+++|.++|.
T Consensus 160 ----~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 160 ----EQNRKAVELIIQKIQ 174 (178)
T ss_dssp ----HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHH
Confidence 267889999998876
No 36
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.47 E-value=5.6e-05 Score=64.13 Aligned_cols=73 Identities=14% Similarity=0.306 Sum_probs=52.3
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
.+.++.||. .++|+|||++|.++|+|+++|||+|.|--.+... ++ ...=.|.|++. +
T Consensus 6 ~~~~i~vp~------~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~-----------~~----~~er~v~I~G~-~- 62 (178)
T 2anr_A 6 YFLKVLIPS------YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY-----------PG----TTERVCLIQGT-I- 62 (178)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC-----------TT----SSEEEEEEEEC-H-
T ss_pred EEEEEEECh------hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC-----------CC----CCCceEEEEeC-H-
Confidence 456788875 4899999999999999999999999996432111 10 11124667774 2
Q ss_pred hHHHHHHHHHHHHHHhccCC
Q 022690 221 DIINSRLDHAVAILENLLKP 240 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL~p 240 (293)
+.+.+|+++|.+++..
T Consensus 63 ----~~v~~A~~~I~~~~~~ 78 (178)
T 2anr_A 63 ----EALNAVHGFIAEKIRE 78 (178)
T ss_dssp ----HHHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHHHhc
Confidence 2577899999888864
No 37
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.39 E-value=0.00011 Score=61.42 Aligned_cols=38 Identities=21% Similarity=0.501 Sum_probs=33.1
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEecc
Q 022690 142 VIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGR 185 (293)
Q Consensus 142 ~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGr 185 (293)
+.++.||. +++|.|||++|.++|+|+++|||+|.|--.
T Consensus 4 ~~~~~ip~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~ 41 (163)
T 3krm_A 4 MVQVFIPA------QAVGAIIGKKGQHIKQLSRFASASIKIAPP 41 (163)
T ss_dssp EEEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCEEEECCC
T ss_pred EEEEEech------hhcceeECCCcHHHHHHHHHHCCeEEEcCC
Confidence 46778874 479999999999999999999999999754
No 38
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.37 E-value=0.00014 Score=65.42 Aligned_cols=53 Identities=26% Similarity=0.488 Sum_probs=43.7
Q ss_pred eeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHHHh
Q 022690 157 FVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILEN 236 (293)
Q Consensus 157 fvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~~~~~rl~~A~e~Ie~ 236 (293)
.+|||||+.|.|+|.||..|||+|.|-| . .|.|.+. + ..++.|...|++
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~-----------------------~--~v~i~G~-~-----~~i~~A~~~i~~ 187 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG-----------------------K--TVAIIGN-P-----IQIEIAKTAIEK 187 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET-----------------------T--EEEEEEC-H-----HHHHHHHHHHHH
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC-----------------------e--EEEEEeC-H-----HHHHHHHHHHHH
Confidence 5999999999999999999999999954 1 2666663 2 357899999999
Q ss_pred ccCC
Q 022690 237 LLKP 240 (293)
Q Consensus 237 LL~p 240 (293)
|+.-
T Consensus 188 li~g 191 (219)
T 2e3u_A 188 LARG 191 (219)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 9964
No 39
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.22 E-value=0.00016 Score=57.18 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=50.5
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCe-EEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 142 VIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECR-VFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 142 ~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcK-I~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
.+.+.||.+ .+|.+|||+|.|+|+|+++|||+ |.|-- ++=.|.|.+.+.+
T Consensus 16 i~~i~I~~d------kIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----------------------ddG~V~I~g~~~e 66 (91)
T 2cpq_A 16 HEEFVVRED------LMGLAIGTHGSNIQQARKVPGVTAIELDE-----------------------DTGTFRIYGESAD 66 (91)
T ss_dssp EEEEECCHH------HHHHHHTTTTHHHHHHHTSTTEEEEEEET-----------------------TTTEEEEEESSHH
T ss_pred EEEEEEChH------HhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----------------------CCCEEEEEECCHH
Confidence 455677644 79999999999999999999998 99921 1237899997754
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022690 221 DIINSRLDHAVAILENLLK 239 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL~ 239 (293)
.+++|+++|+.+-.
T Consensus 67 -----a~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 67 -----AVKKARGFLEFVED 80 (91)
T ss_dssp -----HHHHHHHHHSCCCC
T ss_pred -----HHHHHHHHHHhhhe
Confidence 57889999987654
No 40
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.08 E-value=0.00028 Score=72.14 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=49.9
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCch
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPE 220 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~ 220 (293)
+...+-||.+ .||.||||+|.|+|.|+++|||+|.|-- +=.|.|.+.+.+
T Consensus 567 ~~~~~~I~~~------kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------------------------~G~V~I~~~~~~ 616 (630)
T 3u1k_A 567 VVETVQVPLS------KRAKFVGPGGYNLKKLQAETGVTISQVD------------------------EETFSVFAPTPS 616 (630)
T ss_dssp EEEEEECCHH------HHHHHHCGGGHHHHHHHHHHCCEEEECS------------------------SSEEEEEESSHH
T ss_pred eEEEEEeChh------HhheeECCCChhHHHHHHHHCCEEEEcC------------------------CcEEEEEeCCHH
Confidence 4566778754 6899999999999999999999998741 227889997754
Q ss_pred hHHHHHHHHHHHHHHhcc
Q 022690 221 DIINSRLDHAVAILENLL 238 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL 238 (293)
.+++|++.|+.++
T Consensus 617 -----~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 617 -----AMHEARDFITEIC 629 (630)
T ss_dssp -----HHHHHHHHTTC--
T ss_pred -----HHHHHHHHHHHHh
Confidence 6789999998876
No 41
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=95.70 E-value=0.0072 Score=50.38 Aligned_cols=71 Identities=20% Similarity=0.337 Sum_probs=50.2
Q ss_pred EEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCC-eEEEeccCCcCCchhhhhccCCCCCCCCCCCc-EEEEEecCch
Q 022690 143 IRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTEC-RVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPL-HVLVEAEFPE 220 (293)
Q Consensus 143 ~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgc-KI~IRGrGS~kd~~ke~~lrg~p~~ehl~epL-HVlIsa~~p~ 220 (293)
..|.||- +.+|++||-+|.|+|.+++.||| +|.|.+...... ..++.+ -|.|.+.-
T Consensus 69 ~~v~Vp~------~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--------------~~~~~~~~vtI~G~~-- 126 (144)
T 2qnd_A 69 DVIQVPR------NLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--------------PQEEGMVPFVFVGTK-- 126 (144)
T ss_dssp EEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--------------CCCTTEEEEEEEEEH--
T ss_pred EEEEECH------HHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--------------cccCCeeEEEEEeCH--
Confidence 5677763 47899999999999999999998 999987432110 012222 35566642
Q ss_pred hHHHHHHHHHHHHHHhccC
Q 022690 221 DIINSRLDHAVAILENLLK 239 (293)
Q Consensus 221 ~~~~~rl~~A~e~Ie~LL~ 239 (293)
..++.|+++|+..|.
T Consensus 127 ----~~v~~Ak~li~~~l~ 141 (144)
T 2qnd_A 127 ----DSIANATVLLDYHLN 141 (144)
T ss_dssp ----HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHH
Confidence 267889999998775
No 42
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=95.68 E-value=0.0052 Score=55.14 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=49.1
Q ss_pred EEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchh
Q 022690 142 VIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPED 221 (293)
Q Consensus 142 ~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~ 221 (293)
..+|.||.+ .+|.|||+.|.|+|.|+++|||+|.|--. .=.|.|.+.+...
T Consensus 35 i~~i~IP~~------kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----------------------~g~V~I~~~~~t~ 85 (219)
T 2e3u_A 35 EEYVKIPKD------RIAVLIGKKGQTKKEIEKRTKTKITIDSE-----------------------TGEVWITSTKETE 85 (219)
T ss_dssp EEEEECCHH------HHHHHHCGGGHHHHHHHHHHTEEEEECTT-----------------------TCEEEEEECTTCC
T ss_pred EEEEEeCHH------HhhhhhcccHHHHHHHHHHHCcEEEEEcC-----------------------CCEEEEecCCCCC
Confidence 457888754 68999999999999999999999999421 1136666543000
Q ss_pred HHHHHHHHHHHHHHhccC
Q 022690 222 IINSRLDHAVAILENLLK 239 (293)
Q Consensus 222 ~~~~rl~~A~e~Ie~LL~ 239 (293)
. -..+++|+++|+.+..
T Consensus 86 d-~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 86 D-PLAVWKARDIVLAIGR 102 (219)
T ss_dssp S-HHHHHHHHHHHHHHHT
T ss_pred C-HHHHHHHHHHHHHHhc
Confidence 0 1258899999998873
No 43
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=95.32 E-value=0.0045 Score=64.34 Aligned_cols=63 Identities=21% Similarity=0.386 Sum_probs=9.0
Q ss_pred EEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchhH
Q 022690 143 IRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDI 222 (293)
Q Consensus 143 ~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~~ 222 (293)
..+-||.+ .+|.+|||+|.|+|.|+++||++|.|--.| .|.|.+.+.+
T Consensus 572 ~~~~i~~~------ki~~vig~gg~~i~~i~~~tg~~idi~ddG------------------------~v~I~~~~~~-- 619 (726)
T 4aid_A 572 ETINIPTD------KIREVIGSGGKVIREIVATTGAKVDINDDG------------------------VVKVSASDGA-- 619 (726)
T ss_dssp ------------------------------------------------------------------------CCSCHH--
T ss_pred EEEeCCHH------HHHhhcCCCchhHHHHHHHHCCceeEECCc------------------------eEEEEeCCHH--
Confidence 44556644 689999999999999999999999764332 4555555533
Q ss_pred HHHHHHHHHHHHHhccCC
Q 022690 223 INSRLDHAVAILENLLKP 240 (293)
Q Consensus 223 ~~~rl~~A~e~Ie~LL~p 240 (293)
.+++|++.|+.++..
T Consensus 620 ---~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 620 ---KIKAAIDWIKSITDE 634 (726)
T ss_dssp ---HHHHHHHC-------
T ss_pred ---HHHHHHHHHHHHhhh
Confidence 567788888877754
No 44
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=94.90 E-value=0.042 Score=53.14 Aligned_cols=73 Identities=12% Similarity=0.213 Sum_probs=51.2
Q ss_pred EEEEEEecCCCCCCCCCeeeeEeCCCC--chHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEec
Q 022690 140 KRVIRLDVPVDKYPNFNFVGRILGPRG--NSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAE 217 (293)
Q Consensus 140 k~~~Kv~IPv~~~P~fNfvGrILGPrG--~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~ 217 (293)
+++.++.||- .|.+.|||.+| .++++|.++|||+|.+=-.++-+.. + ....==|.|++.
T Consensus 29 ~VTl~v~Ip~------~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~---------~----~~ks~~VtItG~ 89 (376)
T 3n89_A 29 RVTLNMEFES------QYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTT---------P----DPFAQQVTITGY 89 (376)
T ss_dssp EEEEEEECCG------GGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSS---------C----CTTTTEEEEEEE
T ss_pred EEEEEEEEch------hhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccC---------C----cCCCCeEEEEcC
Confidence 5678888874 47778999999 9999999999999999554311100 0 001113778775
Q ss_pred CchhHHHHHHHHHHHHHHhc
Q 022690 218 FPEDIINSRLDHAVAILENL 237 (293)
Q Consensus 218 ~p~~~~~~rl~~A~e~Ie~L 237 (293)
- +.+++|.+.|.++
T Consensus 90 ~------enVE~AR~~I~~l 103 (376)
T 3n89_A 90 F------GDVDRARMLMRRN 103 (376)
T ss_dssp H------HHHHHHHHHHHHS
T ss_pred H------HHHHHHHHHHHhc
Confidence 3 3678899999886
No 45
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=94.20 E-value=0.092 Score=41.51 Aligned_cols=64 Identities=17% Similarity=0.302 Sum_probs=45.9
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHh-hCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAM-TECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP 219 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~e-TgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p 219 (293)
.+.+|.||.+ |-+.|||++|.|+|+|+++ ++|.|.+=. +++ -|.|++.
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------------------~~~-~ItI~G~-- 75 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEFTE----------------------GED-KITLEGP-- 75 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEECS----------------------SSC-EEEEEEC--
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEeCC----------------------CCC-EEEEECC--
Confidence 5678889855 5578999999999999996 688876542 011 4666665
Q ss_pred hhHHHHHHHHHHHHHHhccC
Q 022690 220 EDIINSRLDHAVAILENLLK 239 (293)
Q Consensus 220 ~~~~~~rl~~A~e~Ie~LL~ 239 (293)
. ..+.+|++.|++++.
T Consensus 76 ~----~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 76 T----EDVSVAQEQIEGMVK 91 (102)
T ss_dssp H----HHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHH
Confidence 3 246778888877764
No 46
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=93.54 E-value=0.035 Score=46.17 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=27.1
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhC
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTE 177 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTg 177 (293)
.++++.||-+ ++|.+||++|.++|+|++++|
T Consensus 4 ~~~~~~Vp~~------~vG~~IG~~G~~I~~i~~e~g 34 (144)
T 2qnd_A 4 FHEQFIVRED------LMGLAIGTHGANIQQARKVPG 34 (144)
T ss_dssp CEEEEECCGG------GHHHHHCGGGHHHHHHHTSTT
T ss_pred eEEEEEECCc------ceeeEECCChhHHHHHHHHHC
Confidence 3577888744 799999999999999999999
No 47
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=89.61 E-value=0.071 Score=45.16 Aligned_cols=30 Identities=13% Similarity=0.356 Sum_probs=27.9
Q ss_pred CCCeeeeEeCCCCchHHHHHHhhCCeEEEe
Q 022690 154 NFNFVGRILGPRGNSLKRVEAMTECRVFIR 183 (293)
Q Consensus 154 ~fNfvGrILGPrG~TlKrle~eTgcKI~IR 183 (293)
+-..+|.||||+|+.++.||..|++.|.|-
T Consensus 63 E~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~ 92 (140)
T 3v69_A 63 EPRLLEIMFGKDGEHIPHLESMLHTLIHVN 92 (140)
T ss_dssp CGGGHHHHHCGGGTTHHHHHHHHTSEEEEE
T ss_pred ehhhhhcccCCCcCccchHHhhcceeEEEe
Confidence 356899999999999999999999999996
No 48
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=88.10 E-value=0.095 Score=54.43 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=0.0
Q ss_pred CeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCC
Q 022690 156 NFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKD 190 (293)
Q Consensus 156 NfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd 190 (293)
..+|.+|||+|.|++.|.++||++|-|...|.+.-
T Consensus 569 ~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~I 603 (723)
T 3cdi_A 569 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 603 (723)
T ss_dssp -----------------------------------
T ss_pred HHhcccccccceeeeeeehhhCceEEecCCccEEE
Confidence 35789999999999999999999999987665544
No 49
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=84.09 E-value=0.69 Score=44.63 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=40.4
Q ss_pred eeeeEeCCCC--chHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHH
Q 022690 157 FVGRILGPRG--NSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAIL 234 (293)
Q Consensus 157 fvGrILGPrG--~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~~~~~rl~~A~e~I 234 (293)
++..|||-+| .++++|.++|||+|..=..++..+. ..+.-.|.|++ .. +.+..|.+.|
T Consensus 196 ~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~--------------~~~~~~ItItG--s~----e~V~~Ark~I 255 (376)
T 3n89_A 196 YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNET--------------RGNIYEIKVVG--NI----DNVLKARRYI 255 (376)
T ss_dssp GHHHHTCCTTSCCHHHHHHHHHTCEEECC-----------------------CCEEEEEEES--CH----HHHHHHHHHH
T ss_pred HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccc--------------cCCceEEEEEe--CH----HHHHHHHHHH
Confidence 4677999999 5569999999999998665442211 01223566666 33 3678899999
Q ss_pred Hhcc
Q 022690 235 ENLL 238 (293)
Q Consensus 235 e~LL 238 (293)
+.+|
T Consensus 256 ~~lL 259 (376)
T 3n89_A 256 MDLL 259 (376)
T ss_dssp HHTS
T ss_pred HhhC
Confidence 9988
No 50
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=81.95 E-value=0.3 Score=42.93 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=32.2
Q ss_pred EEEEEecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEec
Q 022690 141 RVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRG 184 (293)
Q Consensus 141 ~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRG 184 (293)
.+.+|.||-+ -+|.|+|-.|.+.|.|++.+||+|.|-.
T Consensus 4 ~~~~i~VP~~------rvg~liGk~g~~~k~i~e~~g~~i~id~ 41 (191)
T 1tua_A 4 PRIYVKVKPE------RLGAVIGPRGEVKAEIMRRTGTVITVDT 41 (191)
T ss_dssp CCEEEECCGG------GHHHHHCGGGHHHHHHHHHHTEEEEEET
T ss_pred cceEEECCHH------HhhHHHhcCHhHHHHHHHHHCcEEEEEc
Confidence 3457778743 6899999999999999999999999954
No 51
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=68.57 E-value=0.62 Score=48.62 Aligned_cols=38 Identities=24% Similarity=0.656 Sum_probs=11.3
Q ss_pred EecCCCCCCCCCeeeeEeCCCCchHHHHHHhhCCeEEEeccCCc
Q 022690 145 LDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSV 188 (293)
Q Consensus 145 v~IPv~~~P~fNfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~ 188 (293)
+-||.+ .+|.+|||+|.++|.|+++||++|.|-..|.+
T Consensus 602 ~~I~~~------ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG~v 639 (757)
T 1e3p_A 602 VKIPVD------KIGEVIGPKRQMINQIQEDTGAEITIEDDGTI 639 (757)
T ss_dssp C------------------------CTTCCCCCSCC--------
T ss_pred EEEChH------HeehcccccceeeehhhHhhCCEEEecCCceE
Confidence 446654 56899999999999999999999988754443
No 52
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=61.98 E-value=21 Score=31.59 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=49.4
Q ss_pred CeeeeEeCCCCchHHHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHHH
Q 022690 156 NFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILE 235 (293)
Q Consensus 156 NfvGrILGPrG~TlKrle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~~~~~rl~~A~e~Ie 235 (293)
+.+.|++||+|.-+..|.+.++|+|.| |. + =.|+|.+.++... ..+..|+..|+
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~v-G~----N-------------------G~IWi~~~~~~~~--~~~~~ai~~~e 210 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFV-AR----N-------------------GRIHLECPNEDLE--AIAVMAIKIID 210 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEE-ET----T-------------------TEEEEECSCHHHH--HHHHHHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEE-eC----C-------------------CEEEEecCCHHHH--HHHHHHHHHHH
Confidence 578899999999999999899999988 42 1 1688998876543 35777888887
Q ss_pred hccCCCccchHHHHH
Q 022690 236 NLLKPVDESLDHYKK 250 (293)
Q Consensus 236 ~LL~pv~e~~D~lKr 250 (293)
.--- +.+-.|.+|+
T Consensus 211 ~~~~-~~~l~~~v~~ 224 (235)
T 2z0s_A 211 EEAY-TSGLTKRIIK 224 (235)
T ss_dssp HCSC-CTTCHHHHHH
T ss_pred hhhh-hhhHHHHHHH
Confidence 6444 4455555553
No 53
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=56.89 E-value=2.4 Score=35.66 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=26.0
Q ss_pred eeeeEeCCCCchHHHHHHhhCCeEEEec
Q 022690 157 FVGRILGPRGNSLKRVEAMTECRVFIRG 184 (293)
Q Consensus 157 fvGrILGPrG~TlKrle~eTgcKI~IRG 184 (293)
-+|..+|++|..+|.|++++|-||-|--
T Consensus 46 ~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 46 EAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp CHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred CccccCccCchHHHHHHHHhCCeeEEEE
Confidence 3999999999999999999999997766
No 54
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=30.84 E-value=11 Score=36.15 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=34.1
Q ss_pred EEecCCCCCCCCCeeeeEeCCCCchHHHHHHhh-CCeEEEec
Q 022690 144 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMT-ECRVFIRG 184 (293)
Q Consensus 144 Kv~IPv~~~P~fNfvGrILGPrG~TlKrle~eT-gcKI~IRG 184 (293)
||-| ....|+++-||..+|++|..++.|.++. |=||-|--
T Consensus 238 KIAV-~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 278 (366)
T 1k0r_A 238 KIAV-RSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 278 (366)
T ss_dssp EEEE-EESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred EEEE-EeCCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEE
Confidence 4444 2356899999999999999999999999 89998877
No 55
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=30.24 E-value=12 Score=34.25 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=30.7
Q ss_pred CCCCCCeeeeEeCCCCchHHHH-HHhhCCeEEEec
Q 022690 151 KYPNFNFVGRILGPRGNSLKRV-EAMTECRVFIRG 184 (293)
Q Consensus 151 ~~P~fNfvGrILGPrG~TlKrl-e~eTgcKI~IRG 184 (293)
..|+++-+|..+|++|+.++.| ++..|=||-|--
T Consensus 121 ~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 155 (251)
T 2asb_A 121 NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 155 (251)
T ss_dssp SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEE
Confidence 4589999999999999999999 778899998876
No 56
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=29.43 E-value=1.4e+02 Score=23.15 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=30.8
Q ss_pred chHHHHHHhh-CCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHHHhc
Q 022690 167 NSLKRVEAMT-ECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENL 237 (293)
Q Consensus 167 ~TlKrle~eT-gcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~~~~~rl~~A~e~Ie~L 237 (293)
.++..|+... +..|.||--|+ ..-|+|++++.+.+ .++..++..++.|+++
T Consensus 45 ~~idgl~~~~~~gwvlvRpSGT-------------------EP~irvy~Ea~~~~-~~~~~~~~~~~~i~~~ 96 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSGT-------------------EDIVRVYAEANSQE-SADRLAYEVSLLVFQL 96 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSSS-------------------SSSEEEEEEESSHH-HHHHHHHHHHHHHHHH
T ss_pred hhhhcEEEEcCCcEEEEEeCCC-------------------ccEEEEEEEECCHH-HHHHHHHHHHHHHHHH
Confidence 3555555554 56899998666 24578999998743 3444444444444443
No 57
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=26.67 E-value=27 Score=29.57 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=17.6
Q ss_pred hHHHHHHhhCCeEEEeccCC
Q 022690 168 SLKRVEAMTECRVFIRGRGS 187 (293)
Q Consensus 168 TlKrle~eTgcKI~IRGrGS 187 (293)
.+|+||++.|++++.|++|-
T Consensus 40 ~i~~LE~~lg~~Lf~R~~~~ 59 (303)
T 3isp_A 40 RIKSLEQQVGQVLVVREKPC 59 (303)
T ss_dssp HHHHHHHHHTSCCEECSSSC
T ss_pred HHHHHHHHhCCeeEEcCCCC
Confidence 58999999999999999643
No 58
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=25.10 E-value=1.5e+02 Score=27.34 Aligned_cols=50 Identities=12% Similarity=0.257 Sum_probs=33.0
Q ss_pred HHHHHhhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHHH
Q 022690 170 KRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILE 235 (293)
Q Consensus 170 Krle~eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~~~~~rl~~A~e~Ie 235 (293)
.++-+.-|+++.+-||...+...| + =||.+.+++.+ ++.++...+.+.++
T Consensus 350 ~~~~~~p~~~~~~ygk~~~~~~rk---m------------Ghv~~~~~~~~-~~~~~a~~~~~~~~ 399 (403)
T 3k5i_A 350 ECALSIPNASIHLYSKGAAKPGRK---M------------GHITVTAPTMH-EAETHIQPLIDVVD 399 (403)
T ss_dssp HHHTTSTTEEEEECCCCSCCTTCE---E------------EEEEEECSSHH-HHHHHHHHHHHHHH
T ss_pred HHHhcCCCCEEEECCCCCCCCCCe---e------------EEEEEEcCCHH-HHHHHHHHHHhhhh
Confidence 444556789999999865554321 1 39999998754 45556666666665
No 59
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=22.11 E-value=81 Score=24.87 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=30.8
Q ss_pred hhCCeEEEeccCCcCCchhhhhccCCCCCCCCCCCcEEEEEecCchh--HHHHHHHHHHHHHHhccC
Q 022690 175 MTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPED--IINSRLDHAVAILENLLK 239 (293)
Q Consensus 175 eTgcKI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlIsa~~p~~--~~~~rl~~A~e~Ie~LL~ 239 (293)
..|.++.|+|+|--.... + ...+|+|.|.+..|.+ .- ....+++++|+.
T Consensus 47 ~~G~~~rl~G~Gmp~~~~--------~----~~GDL~V~~~V~~P~~~~ls----~~q~~~l~~l~~ 97 (121)
T 1xao_A 47 APGMRKVIEGKGMPIPKY--------G----GYGNLIIKFTIKFPENHFTS----EENLKKLEEILP 97 (121)
T ss_dssp CTTCEEEETTCSCC------------------CCCEEEEEEEECCCTTCSC----HHHHHHHHHHSC
T ss_pred CCCcEEEECCCCCCCCCC--------C----CCCCEEEEEEEECCCCCCCC----HHHHHHHHHHcc
Confidence 468999999999643211 1 2488999999988764 21 234566666664
No 60
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=21.25 E-value=22 Score=31.95 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=29.6
Q ss_pred ceEEEEEEecCCCCCCCCCeeeeEeCCCCchHHHH--------HHhhCCeEEEe
Q 022690 138 VVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRV--------EAMTECRVFIR 183 (293)
Q Consensus 138 ~vk~~~Kv~IPv~~~P~fNfvGrILGPrG~TlKrl--------e~eTgcKI~IR 183 (293)
.+++...|++.-+. -.|-|||-+|..+|+| |+..||||.+.
T Consensus 237 ~~~i~a~i~ve~~~-----~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 237 MLVIKGEIIVDREN-----LKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp SEEEEEEEEESSGG-----GHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred eEEEEEEEEEccCC-----cceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 45666777775443 4577999999999976 55677877764
No 61
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=21.02 E-value=31 Score=32.68 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=29.5
Q ss_pred CCCCCCeeeeEeCCCCchHHHHHHhh-CCeEEEec
Q 022690 151 KYPNFNFVGRILGPRGNSLKRVEAMT-ECRVFIRG 184 (293)
Q Consensus 151 ~~P~fNfvGrILGPrG~TlKrle~eT-gcKI~IRG 184 (293)
..|+++-+|..+|++|+.++.+..+. |=||-|=-
T Consensus 240 ~d~~iDpvGacvg~~G~ri~~i~~el~ge~Idii~ 274 (344)
T 1hh2_P 240 NDPNVDPIGACIGEGGSRIAAILKELKGEKLDVLK 274 (344)
T ss_dssp SSTTSCHHHHHHCTTSTTHHHHHHHTTTCEEEEEE
T ss_pred cCCCccccceeeccCCcEeHHHHHHhCCCeeeEEe
Confidence 45899999999999999999999998 67776644
No 62
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=20.20 E-value=27 Score=29.43 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=12.2
Q ss_pred hHHHHHHhhCCeEEEe-c-cCC
Q 022690 168 SLKRVEAMTECRVFIR-G-RGS 187 (293)
Q Consensus 168 TlKrle~eTgcKI~IR-G-rGS 187 (293)
.+|+||++.|+++++| + ||-
T Consensus 38 ~i~~LE~~lg~~Lf~R~~~~~~ 59 (306)
T 3fzv_A 38 AVKGLEESFGVQLFIRHHAQGV 59 (306)
T ss_dssp HHHHHHHHC-CCCC--------
T ss_pred HHHHHHHHhCCeeEeecCCCCc
Confidence 5799999999999999 3 544
Done!