BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022691
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RAZ5|NSE1_PONAB Non-structural maintenance of chromosomes element 1 homolog
OS=Pongo abelii GN=NSMCE1 PE=2 SV=1
Length = 266
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 98/248 (39%), Gaps = 47/248 (18%)
Query: 8 HHALVQALMTRGPLKEKDFHAIFSG-LTGKSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
H +Q LMT G L+E D + A +++ NIN L S E++
Sbjct: 15 HRRFLQLLMTHGVLEEWDVKRLQRHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKRG 74
Query: 67 RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
+ G+ Y +VN SK+ T + ++ F+ LE I GS +NI
Sbjct: 75 VTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSETGFGSSTNI----- 129
Query: 127 RLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCL 186
NLV +G ++ + E+ L +FVQ++WL +G+ L R+ L
Sbjct: 130 --LNLVDQLKGKKMRK------------KEAEQVLQKFVQNKWL-IEKEGEFTLHGRAIL 174
Query: 187 DLRGWFRNL---DVPFCEVCNEAVVKG-----------------------EILCPRCGLR 220
++ + R V C +C+ +++G E CP C
Sbjct: 175 EMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 234
Query: 221 WPNQVPKA 228
WP+++PK
Sbjct: 235 WPHEIPKV 242
>sp|Q8WV22|NSE1_HUMAN Non-structural maintenance of chromosomes element 1 homolog OS=Homo
sapiens GN=NSMCE1 PE=1 SV=5
Length = 266
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 47/248 (18%)
Query: 8 HHALVQALMTRGPLKEKDFHAIFSG-LTGKSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
H +Q LMT G L+E D + + A +++ NIN L S E++
Sbjct: 15 HRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKRG 74
Query: 67 RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
+ G+ Y +VN SK+ T + ++ F+ LE I S +NI
Sbjct: 75 VTEDDGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSETGFASSTNI----- 129
Query: 127 RLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCL 186
NLV +G ++ + E+ L +FVQ++WL +G+ L R+ L
Sbjct: 130 --LNLVDQLKGKKMRK------------KEAEQVLQKFVQNKWL-IEKEGEFTLHGRAIL 174
Query: 187 DLRGWFRNL---DVPFCEVCNEAVVKG-----------------------EILCPRCGLR 220
++ + R V C +C+ +++G E CP C
Sbjct: 175 EMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 234
Query: 221 WPNQVPKA 228
WP+++PK
Sbjct: 235 WPHEIPKV 242
>sp|Q499U6|NSE1_RAT Non-structural maintenance of chromosomes element 1 homolog
OS=Rattus norvegicus GN=Nsmce1 PE=2 SV=2
Length = 266
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 108/273 (39%), Gaps = 50/273 (18%)
Query: 8 HHALVQALMTRGPLKEKDFHAIFSG-LTGKSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
H +Q LMT G L+E + + + A +++ NIN L S E++
Sbjct: 15 HRRFLQLLMTHGVLEEWEVRRLQNHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKKG 74
Query: 67 RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
+ G+ Y +VN SK+ T + ++ F+ LE I S +NI
Sbjct: 75 ITEDDGRPIYALVNLATTSVSKMATDFAENELDLFRKALELIVDSETGFASSTNI----- 129
Query: 127 RLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCL 186
NLV +G ++ + E+ L +FVQ +WL +G+ L R+ L
Sbjct: 130 --LNLVDQLKGKKMRK------------KEAEQVLQKFVQSKWL-IEKEGEFTLHGRAIL 174
Query: 187 DLRGWFRNL---DVPFCEVCNEAVVKG-----------------------EILCPRCGLR 220
++ + R V C +C+ +++G E CP C
Sbjct: 175 EMEQFIRESYPDAVKMCNICHSLLIQGQSCETCGIRMHLPCVAKYFQSTAEPRCPHCNDY 234
Query: 221 WPNQVPKAEILDEEEVPNATIQSQPAQGPKRKR 253
WP+ +P E+ D E+ A I S+ ++ R R
Sbjct: 235 WPHDIP--EVFDPEKEREAGI-SKSSRKSLRTR 264
>sp|Q3T0X7|NSE1_BOVIN Non-structural maintenance of chromosomes element 1 homolog OS=Bos
taurus GN=NSMCE1 PE=2 SV=2
Length = 266
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 105/273 (38%), Gaps = 50/273 (18%)
Query: 8 HHALVQALMTRGPLKEKDFHAIFSG-LTGKSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
H +Q LMT G L+E D + A +++ IN L S E++
Sbjct: 15 HRRFLQLLMTHGVLEECDVKRLQKHCYKVHDCNATVEKLEDFINTINSVLESLYIEIKKG 74
Query: 67 RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
+ G+ Y +VN SK+ + + ++ F+ LE I S +NI
Sbjct: 75 VTEDDGRPIYALVNLATTSVSKMASDFAENELDLFRKALELIIDSDTGFASSTNI----- 129
Query: 127 RLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCL 186
NLV +G ++ + E L +FVQ++WL +G+ L R+ L
Sbjct: 130 --LNLVDQLKGKKMRK------------KEAEHVLQKFVQNKWL-IEKEGEFTLHGRAIL 174
Query: 187 DLRGWFRNL---DVPFCEVCNEAVVKG-----------------------EILCPRCGLR 220
++ + R V C +C +++G E CP C
Sbjct: 175 EMDQYIRETYPDAVKVCNICRSLLIQGQSCETCGIRMHLPCVAKYFQSSSEPHCPHCNDY 234
Query: 221 WPNQVPKAEILDEEEVPNATIQSQPAQGPKRKR 253
WP++VP E+ D E+ T S+ + P R R
Sbjct: 235 WPHEVP--EVFDPEK-ERETGMSRSNKRPSRSR 264
>sp|Q9D720|NSE1_MOUSE Non-structural maintenance of chromosomes element 1 homolog OS=Mus
musculus GN=Nsmce1 PE=2 SV=1
Length = 266
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 96/248 (38%), Gaps = 47/248 (18%)
Query: 8 HHALVQALMTRGPLKEKDFHAIFSG-LTGKSPGAHQGLFNEYLLNINKELSSCQFELRAC 66
H +Q LMT G L+E + + + A +++ NIN L S E++
Sbjct: 15 HRRFLQLLMTHGVLEEWEVRRLQNHCYQVHDRNATVDKLEDFINNINSVLESLYIEIKKG 74
Query: 67 RDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126
+ G+ Y +VN SK+ T + ++ F+ LE I S +NI
Sbjct: 75 VTEDDGRPIYALVNLATTSVSKMATDFAENELDLFRKALELIVDSETGFASSTNI----- 129
Query: 127 RLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCL 186
NLV +G ++ + E+ L +FVQ +WL +G+ L R+ L
Sbjct: 130 --LNLVDQLKGKKMRK------------KEAEQVLQKFVQSKWL-IEKEGEFTLHGRAIL 174
Query: 187 DLRGWFRNL---DVPFCEVCNEAVVKG-----------------------EILCPRCGLR 220
++ + R V C +C+ +++G E CP C
Sbjct: 175 EMEQFIRESYPDSVKMCNICHGLLIQGQSCETCGIRMHLPCVAKYFQSIPEPHCPHCNDY 234
Query: 221 WPNQVPKA 228
WP+ +P+
Sbjct: 235 WPHDIPEV 242
>sp|Q6PAF4|NSE1_XENLA Non-structural maintenance of chromosomes element 1 homolog
OS=Xenopus laevis GN=nsmce1 PE=2 SV=1
Length = 270
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 109/283 (38%), Gaps = 66/283 (23%)
Query: 4 LNWKHHALVQALMTRGPLKEKDFHAIFSGL--TGKSPGAHQGLFNEYLLNINKELSSCQF 61
+N H +QALM+ G ++ A+ K H L ++++ +N+ L
Sbjct: 5 INESHQRFLQALMSHGIMEGSAVRALHRHCCELHKVHYMHDKL-DDFVGVLNRHLQPLFM 63
Query: 62 ELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNI 121
+ + G Y +VN V ++ +K+ + Y ++ F+ +E I + G ++I
Sbjct: 64 TIEKGVGEEDGLTYYALVNRVENDITKMASDYAENELELFRKTMELII--LSDNGFATSI 121
Query: 122 EALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKE--KTLDEFVQDQWLCCTPDGKIG 179
LN L ++ M +KE + L FVQ++WL +G+
Sbjct: 122 SILN-------------------LADELQSKKMKKKEVEQLLQSFVQEKWLI-GRNGEYT 161
Query: 180 LGVRSCLDLRGWFRNL--DVP-FCEVCNEAVVKGEI-----------------------L 213
L R ++L + RN DV C VC + ++ ++
Sbjct: 162 LHTRCIMELEHYIRNTYQDVAKICNVCRKVAIQSQLCENCGIPLHLQCAGKYFHGKANPT 221
Query: 214 CPRCGLRWPNQVPKAEILDEEEVPNATIQSQPAQGPKRKRTKT 256
CP C WP+++P + +QGP +T+T
Sbjct: 222 CPNCNESWPHEIPD-------------LNQVSSQGPSHSQTET 251
>sp|Q6P881|NSE1_XENTR Non-structural maintenance of chromosomes element 1 homolog
OS=Xenopus tropicalis GN=nsmce1 PE=2 SV=1
Length = 270
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 117/291 (40%), Gaps = 56/291 (19%)
Query: 4 LNWKHHALVQALMTRGPLKEKDFHAIFSGL--TGKSPGAHQGLFNEYLLNINKELSSCQF 61
+N H +Q LM+ G ++ A+ K H L ++++ +NK L
Sbjct: 5 INESHQRFLQVLMSHGIMESSLVRALHRHCCEVHKVNYMHDNL-DDFVGVLNKHLQPLFM 63
Query: 62 ELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNI 121
++ + G Y +VN V ++ +K+ + Y ++ F+ +E I + G I
Sbjct: 64 KIEKGVGEEDGLTYYALVNRVENDITKMASDYAENELELFRKTMELII--ISENGFAPPI 121
Query: 122 EALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQK--EKTLDEFVQDQWLCCTPDGKIG 179
LN L ++ M +K E+ L FVQD+WL +G+
Sbjct: 122 SILN-------------------LADELQSKKMKKKEVEQLLQSFVQDKWL-IGRNGEYT 161
Query: 180 LGVRSCLDLRGWFRNL--DVP-FCEVCNEAVVKGEI-----------------------L 213
L R ++L + N DV C VC++ ++ ++ L
Sbjct: 162 LHTRCIMELEHYILNTYQDVAKICNVCHKIAIQCQLCENCGIPLHLQCAGIYFRGIANPL 221
Query: 214 CPRCGLRWPNQVPKAEILDEEEVPNATIQSQPAQGPKRKRTKTNETHAKDA 264
CP C WP+++P + + ++ Q+ P +G + +R++ T A+ +
Sbjct: 222 CPNCKESWPHEIPDLSQVSSQGPSHS--QAAPVRG-RNQRSRNISTVARTS 269
>sp|Q6DGT7|NSE1_DANRE Non-structural maintenance of chromosomes element 1 homolog
OS=Danio rerio GN=nsmce1 PE=2 SV=1
Length = 239
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 29/158 (18%)
Query: 124 LNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVR 183
+++ +E+ S + +LN + + E L++FVQD+WL DG+ L VR
Sbjct: 78 MDLIVESDSGSASSTAILNSADKLISKKLKKKEAELVLNKFVQDKWLK-EQDGEYTLSVR 136
Query: 184 SCLDLRGWFRNLD---VPFCEVCNEAVVKGEIL-------------------------CP 215
+++ + R + + C VC+ ++ ++ CP
Sbjct: 137 CIVEMEPYMRTIYQDMIKVCYVCHNIALQCQVCENPSCEIKVHLPCVARYFRARSDPHCP 196
Query: 216 RCGLRWPNQVPKAEILDEEEVPNATIQSQPAQGPKRKR 253
C WP+++P+ + + N S+ P + R
Sbjct: 197 ACNDFWPHEIPEMQAAQSQSSQNLPSSSKENTAPTQTR 234
>sp|Q07913|NSE1_YEAST Non-structural maintenance of chromosomes element 1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NSE1 PE=1 SV=1
Length = 336
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 76 YGVVNNVADEQSKLGTKYTVQQIAFFKGILE--AIAQDVMAQGSISNIEALNIRLENLVL 133
+ VN + E++KL T++ +I F K +E I+ + + +G + + +++
Sbjct: 133 FVYVNLASTEETKLATRFNQNEIEFMKWAIEQFMISGETIVEGPALETSIIVKEVNRILV 192
Query: 134 STQGSQLLNGPLPAA-----------FRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGV 182
+ G L + F+ T + E L + +W T +GK G+ +
Sbjct: 193 AATGDSNLAKWRKFSTFTVGSTNLFQFQELTATDIEDLLLRLCELKWFYRTQEGKFGIDL 252
Query: 183 RSCLDLRGWFRNL-DVPFCEVCNEAVVKGEILCPRCG 218
R +L + ++ ++ C+ C++ ++G RCG
Sbjct: 253 RCIAELEEYLTSMYNLNTCQNCHKLAIQG----VRCG 285
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo pygmaeus
GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 12 VQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFE---LRACRD 68
+ A++ G L+ + + F G GK P + + E L +N + S C + R
Sbjct: 1080 LNAMLRLGVLQPEVYKQSFPGSNGKHPEIKKQEYEEVLQTVNTDFSPCLISDNLEQPMRS 1139
Query: 69 QYVGQVCYGVVNNVADE 85
+ QVC N++ D+
Sbjct: 1140 SHASQVCSETPNDLLDD 1156
>sp|Q58Y74|TRCG1_MOUSE Taste receptor cell protein 1 OS=Mus musculus GN=Trcg1 PE=2 SV=1
Length = 825
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 52/127 (40%), Gaps = 12/127 (9%)
Query: 53 NKELSSCQFELRACRDQYVGQVCYGVVN--NVADEQSKLGTKYTVQQIAFFKGI-LEAIA 109
NK S CQ ELR + + V + N V E+ Q AFF + +AI
Sbjct: 695 NKTSSECQ-ELRGLLTRQLTSVLQPLKNFGQVVVEEFHQEPLTARVQTAFFGAVPAQAII 753
Query: 110 QDVMAQ--GSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQD 167
QD + Q GS+ E L + + VL T S+ GP A N Q+ +L V
Sbjct: 754 QDTVLQALGSLQETEGLQLEMLLPVLGTPSSRASRGPRGGAMLNL---QRFTSLFVLVA- 809
Query: 168 QWLCCTP 174
LC P
Sbjct: 810 --LCTAP 814
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,201,344
Number of Sequences: 539616
Number of extensions: 4411838
Number of successful extensions: 9766
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 9747
Number of HSP's gapped (non-prelim): 22
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)