Query 022691
Match_columns 293
No_of_seqs 134 out of 222
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:36:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nw0_A Non-structural maintena 100.0 4.7E-59 1.6E-63 424.1 18.5 207 3-229 2-235 (238)
2 3nw0_B Melanoma-associated ant 97.4 0.0023 7.8E-08 56.9 13.0 158 6-189 10-182 (217)
3 2wa0_A Melanoma-associated ant 97.4 0.00088 3E-08 60.5 10.0 155 9-189 38-206 (240)
4 2ct0_A Non-SMC element 1 homol 96.5 0.00078 2.7E-08 50.2 1.6 34 196-229 14-70 (74)
5 3mq0_A Transcriptional repress 92.5 0.17 5.8E-06 45.7 5.8 41 150-191 55-95 (275)
6 1on2_A Transcriptional regulat 91.9 0.72 2.5E-05 36.5 8.4 70 93-189 2-71 (142)
7 2heo_A Z-DNA binding protein 1 91.1 0.55 1.9E-05 33.4 6.1 32 150-181 35-66 (67)
8 1mkm_A ICLR transcriptional re 88.4 0.98 3.3E-05 39.8 6.9 39 150-189 33-71 (249)
9 3r4k_A Transcriptional regulat 88.1 0.39 1.3E-05 42.8 4.1 41 150-191 31-72 (260)
10 2xrn_A HTH-type transcriptiona 87.8 0.75 2.6E-05 40.4 5.7 36 150-185 31-67 (241)
11 3kfw_X Uncharacterized protein 87.2 1.2 4E-05 40.0 6.7 54 115-189 18-71 (247)
12 3cuo_A Uncharacterized HTH-typ 86.4 1.9 6.6E-05 31.5 6.5 44 151-194 49-95 (99)
13 2hc5_A ORF 99, hypothetical pr 86.0 0.84 2.9E-05 36.6 4.5 49 40-88 35-83 (117)
14 2x4h_A Hypothetical protein SS 85.8 4 0.00014 31.9 8.5 74 91-192 9-82 (139)
15 1u2w_A CADC repressor, cadmium 85.4 2.5 8.5E-05 33.0 7.0 45 150-194 66-113 (122)
16 2o0y_A Transcriptional regulat 83.6 0.82 2.8E-05 40.6 3.8 40 150-190 48-87 (260)
17 3cuq_B Vacuolar protein-sortin 80.9 22 0.00076 31.0 12.0 107 18-173 93-201 (218)
18 3jth_A Transcription activator 80.9 2 6.9E-05 31.8 4.6 44 151-194 47-93 (98)
19 2oqg_A Possible transcriptiona 80.2 1.4 4.7E-05 33.3 3.5 45 150-194 44-91 (114)
20 2ia2_A Putative transcriptiona 79.0 1.4 4.8E-05 39.2 3.6 39 150-190 46-84 (265)
21 2g7u_A Transcriptional regulat 78.8 1.7 5.9E-05 38.4 4.1 35 150-185 39-73 (257)
22 3hrs_A Metalloregulator SCAR; 78.0 3.9 0.00013 35.2 6.1 42 151-192 31-72 (214)
23 3pqk_A Biofilm growth-associat 77.7 2.4 8.3E-05 31.6 4.2 44 151-194 47-93 (102)
24 1ub9_A Hypothetical protein PH 77.1 5.2 0.00018 29.0 5.8 44 150-193 40-89 (100)
25 3l09_A Putative transcriptiona 74.5 5.3 0.00018 36.2 6.2 42 150-191 55-99 (266)
26 2akl_A PHNA-like protein PA012 74.5 0.48 1.7E-05 38.8 -0.7 30 196-225 26-58 (138)
27 1weo_A Cellulose synthase, cat 72.0 6 0.00021 30.2 4.9 26 198-223 44-70 (93)
28 3f6o_A Probable transcriptiona 71.6 3.2 0.00011 32.0 3.5 45 150-194 41-88 (118)
29 2kko_A Possible transcriptiona 70.5 2.9 9.9E-05 31.9 3.0 45 150-194 48-95 (108)
30 3eco_A MEPR; mutlidrug efflux 69.0 25 0.00086 26.7 8.4 93 5-110 30-136 (139)
31 2h09_A Transcriptional regulat 69.0 16 0.00056 28.9 7.4 37 151-187 65-101 (155)
32 2wte_A CSA3; antiviral protein 67.3 13 0.00046 32.8 7.1 36 151-186 177-213 (244)
33 3oop_A LIN2960 protein; protei 67.0 18 0.0006 27.9 7.1 93 5-110 36-140 (143)
34 3b73_A PHIH1 repressor-like pr 64.3 14 0.00046 28.9 5.8 35 151-185 40-74 (111)
35 2jsc_A Transcriptional regulat 64.0 4.6 0.00016 31.2 3.0 45 150-194 44-91 (118)
36 3ech_A MEXR, multidrug resista 64.0 15 0.00052 28.3 6.2 94 4-110 35-140 (142)
37 1y0u_A Arsenical resistance op 63.4 7 0.00024 28.8 3.9 40 151-193 54-93 (96)
38 1r1u_A CZRA, repressor protein 61.8 6.9 0.00024 29.4 3.6 45 150-194 49-96 (106)
39 2htj_A P fimbrial regulatory p 61.6 22 0.00076 25.2 6.2 38 151-188 25-67 (81)
40 2con_A RUH-035 protein, NIN on 61.4 0.8 2.7E-05 34.3 -1.8 24 197-220 15-39 (79)
41 1fx7_A Iron-dependent represso 61.4 31 0.001 29.6 8.2 40 151-190 35-74 (230)
42 1r7j_A Conserved hypothetical 60.6 8.6 0.00029 28.9 3.9 42 150-192 30-74 (95)
43 3bdd_A Regulatory protein MARR 60.1 53 0.0018 24.7 9.6 94 4-110 29-135 (142)
44 3f6v_A Possible transcriptiona 58.8 6.8 0.00023 32.0 3.3 45 150-194 81-128 (151)
45 1qbj_A Protein (double-strande 58.2 30 0.001 25.3 6.5 32 151-182 38-71 (81)
46 3s2w_A Transcriptional regulat 57.0 45 0.0015 26.1 7.9 94 4-110 48-153 (159)
47 2apo_B Ribosome biogenesis pro 56.9 3.8 0.00013 29.0 1.2 32 196-229 5-36 (60)
48 2qq9_A Diphtheria toxin repres 56.0 37 0.0013 29.0 7.8 38 151-188 35-72 (226)
49 2qvo_A Uncharacterized protein 55.8 22 0.00075 25.9 5.4 42 150-191 40-84 (95)
50 3fm5_A Transcriptional regulat 55.7 28 0.00096 27.0 6.4 59 52-111 74-144 (150)
51 3lmm_A Uncharacterized protein 55.2 11 0.00039 37.5 4.8 131 7-178 431-568 (583)
52 2jtv_A Protein of unknown func 55.1 5.7 0.0002 28.0 1.8 27 158-184 28-58 (65)
53 1qgp_A Protein (double strande 54.7 29 0.00099 24.9 5.8 32 151-182 42-75 (77)
54 2f2e_A PA1607; transcription f 53.9 11 0.00037 30.3 3.7 44 151-194 48-102 (146)
55 3bpv_A Transcriptional regulat 53.4 53 0.0018 24.6 7.6 41 150-190 53-99 (138)
56 3df8_A Possible HXLR family tr 53.2 15 0.00051 28.0 4.3 43 151-193 54-104 (111)
57 1p6r_A Penicillinase repressor 53.2 33 0.0011 24.2 5.9 58 92-176 6-63 (82)
58 1r1t_A Transcriptional repress 53.1 11 0.00039 29.3 3.6 45 150-194 69-116 (122)
59 3bj6_A Transcriptional regulat 53.1 69 0.0024 24.5 8.3 37 150-186 64-106 (152)
60 3hsr_A HTH-type transcriptiona 52.0 31 0.0011 26.4 6.1 57 52-110 70-137 (140)
61 2nnn_A Probable transcriptiona 51.9 44 0.0015 25.1 6.9 41 150-190 62-108 (140)
62 1jgs_A Multiple antibiotic res 51.8 61 0.0021 24.4 7.7 40 150-189 58-103 (138)
63 1s3j_A YUSO protein; structura 51.7 50 0.0017 25.4 7.3 40 150-189 61-106 (155)
64 2a61_A Transcriptional regulat 51.7 46 0.0016 25.2 7.0 41 150-190 57-103 (145)
65 2jt1_A PEFI protein; solution 51.7 17 0.00057 26.6 4.0 37 151-187 35-71 (77)
66 3g3z_A NMB1585, transcriptiona 51.4 71 0.0024 24.3 8.1 43 150-192 55-103 (145)
67 2kiz_A E3 ubiquitin-protein li 51.2 8.8 0.0003 26.3 2.4 29 199-227 39-67 (69)
68 1ryq_A DNA-directed RNA polyme 49.8 4.3 0.00015 29.5 0.5 22 197-220 11-32 (69)
69 2zkz_A Transcriptional repress 49.6 25 0.00086 26.0 4.9 44 150-194 51-97 (99)
70 3bro_A Transcriptional regulat 49.6 80 0.0027 23.7 8.2 37 150-186 60-102 (141)
71 2fa5_A Transcriptional regulat 49.1 70 0.0024 24.8 7.9 40 150-189 73-118 (162)
72 2rdp_A Putative transcriptiona 49.0 86 0.0029 23.9 8.5 92 6-110 42-145 (150)
73 1xmk_A Double-stranded RNA-spe 48.8 68 0.0023 23.4 7.0 33 151-183 36-71 (79)
74 1sd4_A Penicillinase repressor 48.5 44 0.0015 25.1 6.4 59 91-176 6-64 (126)
75 2y75_A HTH-type transcriptiona 48.3 25 0.00085 27.1 4.9 52 150-201 36-94 (129)
76 1v87_A Deltex protein 2; ring- 48.0 25 0.00085 26.5 4.7 28 199-226 65-97 (114)
77 3bja_A Transcriptional regulat 47.9 77 0.0026 23.7 7.7 93 5-110 32-136 (139)
78 2nnn_A Probable transcriptiona 47.1 66 0.0023 24.1 7.2 23 55-78 75-97 (140)
79 1w7p_D VPS36P, YLR417W; ESCRT- 47.0 1.8E+02 0.0063 28.9 12.0 112 18-173 432-548 (566)
80 1lj9_A Transcriptional regulat 46.9 65 0.0022 24.4 7.2 41 150-190 53-99 (144)
81 2k5c_A Uncharacterized protein 46.9 1.1 3.9E-05 33.8 -3.0 19 211-229 51-69 (95)
82 2aus_D NOP10, ribosome biogene 46.7 5.2 0.00018 28.3 0.5 32 196-229 4-35 (60)
83 1chc_A Equine herpes virus-1 r 46.3 14 0.00049 25.0 2.9 28 199-226 28-55 (68)
84 2frh_A SARA, staphylococcal ac 46.2 86 0.0029 23.8 7.8 41 150-190 63-109 (127)
85 3tgn_A ADC operon repressor AD 46.2 40 0.0014 25.7 5.8 93 4-110 36-143 (146)
86 3bja_A Transcriptional regulat 46.0 46 0.0016 25.0 6.1 41 151-191 58-104 (139)
87 2pex_A Transcriptional regulat 46.0 78 0.0027 24.3 7.6 37 150-186 71-113 (153)
88 3ech_A MEXR, multidrug resista 45.8 63 0.0021 24.6 7.0 41 150-190 61-107 (142)
89 1ldd_A APC2WHB, anaphase promo 45.8 21 0.00072 26.1 3.7 71 95-180 3-73 (74)
90 3fm5_A Transcriptional regulat 45.3 71 0.0024 24.5 7.2 42 150-191 64-111 (150)
91 2jny_A Uncharacterized BCR; st 44.8 1.8 6.1E-05 31.3 -2.2 34 188-223 3-40 (67)
92 4a5n_A Uncharacterized HTH-typ 44.7 18 0.00063 28.9 3.6 45 150-194 50-106 (131)
93 2a61_A Transcriptional regulat 44.4 52 0.0018 24.9 6.3 62 5-79 32-93 (145)
94 1b4a_A Arginine repressor; hel 44.1 67 0.0023 26.2 7.1 63 5-80 4-66 (149)
95 2gmg_A Hypothetical protein PF 44.1 6.5 0.00022 30.8 0.8 28 196-223 66-96 (105)
96 2rdp_A Putative transcriptiona 43.6 86 0.0029 23.8 7.5 42 150-191 66-113 (150)
97 3nrv_A Putative transcriptiona 43.5 1E+02 0.0035 23.4 7.9 42 150-191 64-111 (148)
98 2co5_A Viral protein F93; vira 43.4 26 0.00088 26.6 4.1 50 151-200 41-93 (99)
99 2nyx_A Probable transcriptiona 43.4 82 0.0028 24.9 7.5 41 150-190 69-115 (168)
100 2bv6_A MGRA, HTH-type transcri 42.8 61 0.0021 24.5 6.4 41 151-191 62-108 (142)
101 3e6m_A MARR family transcripti 42.7 88 0.003 24.4 7.5 43 150-192 77-125 (161)
102 2fbi_A Probable transcriptiona 42.6 68 0.0023 24.1 6.6 40 150-189 60-105 (142)
103 3oop_A LIN2960 protein; protei 42.0 1.1E+02 0.0038 23.1 8.3 42 150-191 61-108 (143)
104 3cjn_A Transcriptional regulat 41.9 1E+02 0.0035 23.8 7.8 38 150-187 76-119 (162)
105 2d1h_A ST1889, 109AA long hypo 41.5 14 0.00046 26.9 2.2 43 151-193 47-98 (109)
106 3nrv_A Putative transcriptiona 41.3 1.1E+02 0.0037 23.2 7.7 94 4-110 38-143 (148)
107 4hbl_A Transcriptional regulat 40.9 1E+02 0.0036 23.6 7.6 44 150-193 65-114 (149)
108 2qww_A Transcriptional regulat 40.4 1.2E+02 0.0041 23.1 8.3 40 150-189 65-112 (154)
109 1ku9_A Hypothetical protein MJ 40.3 37 0.0013 25.8 4.7 43 150-192 51-97 (152)
110 3nqo_A MARR-family transcripti 40.2 96 0.0033 25.2 7.6 43 150-192 67-115 (189)
111 3bpv_A Transcriptional regulat 40.2 1.1E+02 0.0039 22.7 10.3 93 5-110 28-132 (138)
112 2lkp_A Transcriptional regulat 39.9 19 0.00066 27.2 3.0 45 150-194 55-102 (119)
113 2fsw_A PG_0823 protein; alpha- 39.8 21 0.00073 26.7 3.2 34 151-184 50-89 (107)
114 2fbh_A Transcriptional regulat 39.8 1.1E+02 0.0039 22.9 7.6 41 150-190 62-108 (146)
115 2ect_A Ring finger protein 126 39.8 22 0.00076 24.8 3.1 28 199-226 40-67 (78)
116 2fbi_A Probable transcriptiona 39.5 42 0.0014 25.3 4.9 61 6-79 36-96 (142)
117 1sfx_A Conserved hypothetical 39.3 87 0.003 22.2 6.5 24 151-174 45-68 (109)
118 3bdd_A Regulatory protein MARR 39.1 87 0.003 23.4 6.8 37 150-186 55-97 (142)
119 3rjp_A COVR; winged helix-turn 39.0 69 0.0023 23.1 5.9 54 4-60 23-78 (96)
120 4ds7_A Calmodulin, CAM; protei 38.9 1.1E+02 0.0039 22.4 7.6 36 89-126 1-36 (147)
121 3s2w_A Transcriptional regulat 38.8 79 0.0027 24.6 6.6 42 150-191 74-121 (159)
122 2eth_A Transcriptional regulat 38.7 89 0.003 24.1 6.9 42 150-191 68-115 (154)
123 3aaf_A Werner syndrome ATP-dep 38.6 22 0.00076 28.5 3.2 36 150-185 63-103 (134)
124 3l7w_A Putative uncharacterize 38.6 30 0.001 26.1 3.8 44 151-194 37-87 (108)
125 3k2z_A LEXA repressor; winged 38.2 77 0.0026 26.2 6.7 59 92-176 2-60 (196)
126 2eth_A Transcriptional regulat 38.2 1.3E+02 0.0046 23.0 8.4 93 5-110 43-147 (154)
127 2vn2_A DNAD, chromosome replic 38.1 24 0.00082 27.6 3.3 24 150-173 61-84 (128)
128 2djb_A Polycomb group ring fin 38.0 22 0.00074 24.6 2.7 30 199-228 38-67 (72)
129 1tbx_A ORF F-93, hypothetical 37.7 31 0.001 25.1 3.7 41 150-190 36-79 (99)
130 1yg2_A Gene activator APHA; vi 37.5 35 0.0012 28.0 4.5 45 150-194 33-85 (179)
131 1lj9_A Transcriptional regulat 37.4 1.3E+02 0.0044 22.6 9.3 94 4-110 27-132 (144)
132 1s3j_A YUSO protein; structura 37.3 1.3E+02 0.0046 22.8 7.7 64 42-110 65-140 (155)
133 2hzt_A Putative HTH-type trans 37.2 37 0.0013 25.3 4.2 34 151-184 39-78 (107)
134 4hbl_A Transcriptional regulat 37.1 1.4E+02 0.0047 22.8 8.6 93 5-110 40-141 (149)
135 3f8b_A Transcriptional regulat 36.9 34 0.0012 26.3 4.0 44 151-194 44-95 (116)
136 1jgs_A Multiple antibiotic res 36.7 93 0.0032 23.2 6.6 23 55-78 71-93 (138)
137 1z91_A Organic hydroperoxide r 36.7 80 0.0027 23.9 6.2 40 150-189 64-109 (147)
138 2gtj_A FYN-binding protein; SH 36.2 9.7 0.00033 29.4 0.6 38 152-189 46-85 (96)
139 3boq_A Transcriptional regulat 36.1 1.1E+02 0.0036 23.7 7.0 52 58-110 88-151 (160)
140 3cjn_A Transcriptional regulat 36.0 1.5E+02 0.0051 22.9 9.3 93 5-110 51-155 (162)
141 2ktg_A Calmodulin, putative; e 35.8 94 0.0032 21.0 6.0 68 87-180 2-69 (85)
142 2g9w_A Conserved hypothetical 35.7 69 0.0024 24.9 5.7 97 2-110 5-124 (138)
143 3kp7_A Transcriptional regulat 35.7 69 0.0024 24.6 5.8 94 4-110 36-142 (151)
144 3r0a_A Putative transcriptiona 35.7 1.4E+02 0.005 22.6 8.4 44 151-194 53-102 (123)
145 2bv6_A MGRA, HTH-type transcri 35.6 1.4E+02 0.0047 22.4 8.4 90 7-110 38-138 (142)
146 2k4b_A Transcriptional regulat 34.9 27 0.00093 26.4 3.0 28 150-177 63-90 (99)
147 3cdh_A Transcriptional regulat 34.9 94 0.0032 23.9 6.4 42 150-191 67-114 (155)
148 3zq7_A KDP operon transcriptio 34.8 78 0.0027 23.1 5.7 55 3-60 28-84 (102)
149 2fa5_A Transcriptional regulat 34.5 1.1E+02 0.0038 23.6 6.9 91 7-110 50-152 (162)
150 2v79_A DNA replication protein 34.5 26 0.0009 28.0 3.0 23 150-172 61-83 (135)
151 2fxa_A Protease production reg 33.7 1.1E+02 0.0036 25.6 7.0 44 150-193 72-121 (207)
152 1gxq_A PHOB, phosphate regulon 33.6 98 0.0034 22.8 6.1 61 3-66 31-95 (106)
153 4b8x_A SCO5413, possible MARR- 33.5 79 0.0027 24.6 5.8 36 150-185 61-102 (147)
154 1z7u_A Hypothetical protein EF 33.3 28 0.00095 26.3 2.9 35 151-185 47-87 (112)
155 3tgn_A ADC operon repressor AD 33.2 44 0.0015 25.4 4.1 42 151-192 62-109 (146)
156 4esf_A PADR-like transcription 33.2 42 0.0014 25.9 4.0 44 151-194 41-92 (117)
157 3hhh_A Transcriptional regulat 33.2 36 0.0012 26.3 3.6 44 151-194 43-94 (116)
158 3k0l_A Repressor protein; heli 33.1 1.4E+02 0.0047 23.2 7.3 41 150-190 70-116 (162)
159 2z9m_A Response regulator YYCF 33.0 1E+02 0.0036 23.3 6.3 54 3-60 36-92 (120)
160 3jw4_A Transcriptional regulat 32.6 37 0.0013 26.2 3.6 55 55-110 80-146 (148)
161 1ri9_A FYN-binding protein; SH 32.5 13 0.00045 28.9 0.8 38 150-187 58-95 (102)
162 3u2r_A Regulatory protein MARR 32.3 80 0.0027 24.9 5.7 42 150-191 72-119 (168)
163 2l0b_A E3 ubiquitin-protein li 32.1 22 0.00075 26.0 2.0 25 199-223 65-89 (91)
164 1opc_A OMPR, OMPRC; transcript 31.7 82 0.0028 23.4 5.4 55 3-60 31-87 (110)
165 2hr3_A Probable transcriptiona 31.3 49 0.0017 25.2 4.1 43 150-192 60-108 (147)
166 3eco_A MEPR; mutlidrug efflux 31.2 1.6E+02 0.0056 21.9 8.0 41 150-190 57-103 (139)
167 2ecm_A Ring finger and CHY zin 30.8 25 0.00085 22.6 1.9 25 199-223 31-55 (55)
168 2js4_A UPF0434 protein BB2007; 30.8 2.6 8.9E-05 30.6 -3.3 28 196-223 7-38 (70)
169 2xeu_A Ring finger protein 4; 30.8 25 0.00085 23.2 2.0 26 199-224 32-57 (64)
170 1okr_A MECI, methicillin resis 30.7 25 0.00087 26.4 2.3 34 151-184 39-76 (123)
171 2ea6_A Ring finger protein 4; 30.4 25 0.00086 23.6 2.0 26 198-223 43-68 (69)
172 3l9f_A Putative uncharacterize 30.2 26 0.0009 30.0 2.5 45 151-195 68-120 (204)
173 3lmm_A Uncharacterized protein 30.1 57 0.002 32.4 5.3 37 151-188 455-496 (583)
174 3ng2_A RNF4, snurf, ring finge 30.1 26 0.0009 23.7 2.1 26 199-224 39-64 (71)
175 3ox6_A Calcium-binding protein 30.0 1.6E+02 0.0056 21.5 7.9 36 89-126 1-36 (153)
176 2esh_A Conserved hypothetical 29.6 29 0.00098 26.6 2.4 43 152-194 46-96 (118)
177 2b0l_A GTP-sensing transcripti 29.5 1.3E+02 0.0044 22.5 6.1 24 151-174 54-77 (102)
178 3f3x_A Transcriptional regulat 29.4 42 0.0014 25.7 3.4 41 150-190 60-106 (144)
179 3lpe_B DNA-directed RNA polyme 29.2 11 0.00037 26.5 -0.2 20 198-219 2-21 (59)
180 2gxg_A 146AA long hypothetical 29.2 1.8E+02 0.0061 21.7 9.1 56 54-110 72-139 (146)
181 2pk7_A Uncharacterized protein 28.9 3.1 0.0001 30.2 -3.2 28 196-223 7-38 (69)
182 2dql_A PEX protein; circadian 28.7 45 0.0015 25.6 3.4 44 151-194 53-105 (115)
183 3hsr_A HTH-type transcriptiona 28.7 61 0.0021 24.7 4.2 42 150-191 60-107 (140)
184 3bro_A Transcriptional regulat 28.6 1.8E+02 0.0062 21.6 10.1 56 54-110 72-139 (141)
185 3ri2_A Transcriptional regulat 28.4 41 0.0014 26.4 3.2 44 151-194 49-99 (123)
186 2jr6_A UPF0434 protein NMA0874 28.1 2.8 9.7E-05 30.3 -3.5 28 196-223 7-38 (68)
187 1yyv_A Putative transcriptiona 28.0 34 0.0012 26.9 2.6 34 151-184 60-99 (131)
188 2dk5_A DNA-directed RNA polyme 28.0 68 0.0023 23.8 4.2 70 3-85 17-89 (91)
189 2nyx_A Probable transcriptiona 27.9 2.1E+02 0.0072 22.4 7.6 56 54-110 81-148 (168)
190 4esb_A Transcriptional regulat 27.6 57 0.002 25.0 3.8 44 151-194 39-90 (115)
191 3p8b_A DNA-directed RNA polyme 27.6 13 0.00045 27.8 0.1 22 197-220 23-44 (81)
192 2pmu_A Response regulator PHOP 27.4 1.4E+02 0.0048 22.1 6.1 53 3-58 34-88 (110)
193 2hwv_A DNA-binding response re 27.4 1.2E+02 0.004 23.3 5.7 59 4-66 44-108 (121)
194 3cuq_A Vacuolar-sorting protei 27.2 3.2E+02 0.011 24.0 11.1 107 18-173 92-201 (234)
195 2ecy_A TNF receptor-associated 26.6 52 0.0018 22.0 3.1 26 198-223 36-62 (66)
196 2ovk_B RLC, myosin regulatory 26.6 1.5E+02 0.005 22.2 6.2 38 87-126 4-41 (153)
197 3bj6_A Transcriptional regulat 26.5 2.1E+02 0.0071 21.6 8.2 55 55-110 77-143 (152)
198 2ysl_A Tripartite motif-contai 26.2 38 0.0013 23.0 2.4 26 199-224 42-70 (73)
199 1q1h_A TFE, transcription fact 26.1 43 0.0015 24.8 2.8 24 150-173 43-66 (110)
200 3irb_A Uncharacterized protein 26.1 5.5 0.00019 32.6 -2.5 42 178-220 27-70 (145)
201 2lcq_A Putative toxin VAPC6; P 25.9 12 0.00041 30.7 -0.5 25 196-220 131-157 (165)
202 3k0l_A Repressor protein; heli 25.7 2.3E+02 0.0079 21.8 10.4 94 5-111 45-150 (162)
203 2gxg_A 146AA long hypothetical 25.7 64 0.0022 24.4 3.9 41 150-190 60-106 (146)
204 1x4j_A Ring finger protein 38; 25.6 39 0.0013 23.3 2.3 26 199-224 48-73 (75)
205 1t6s_A Conserved hypothetical 25.5 2.8E+02 0.0096 22.8 8.1 133 10-185 10-157 (162)
206 3e6m_A MARR family transcripti 25.4 1.5E+02 0.005 23.0 6.1 56 54-110 89-156 (161)
207 2ecv_A Tripartite motif-contai 25.0 53 0.0018 22.7 3.0 27 197-223 39-71 (85)
208 1e4u_A Transcriptional repress 24.8 80 0.0027 22.5 4.0 29 198-226 36-65 (78)
209 2k4j_A Putative transcriptiona 24.8 1.2E+02 0.004 23.0 5.2 55 3-60 41-97 (115)
210 2akl_A PHNA-like protein PA012 24.8 25 0.00087 28.6 1.3 19 211-229 27-45 (138)
211 2dk5_A DNA-directed RNA polyme 24.6 1.7E+02 0.0058 21.6 5.9 23 150-172 46-68 (91)
212 1sfu_A 34L protein; protein/Z- 24.6 1.9E+02 0.0065 21.0 5.9 25 150-174 39-63 (75)
213 1okr_A MECI, methicillin resis 24.5 2.1E+02 0.0072 21.0 7.7 58 1-66 5-62 (123)
214 1pft_A TFIIB, PFTFIIBN; N-term 24.4 15 0.00051 24.2 -0.1 31 196-226 4-39 (50)
215 4ev0_A Transcription regulator 23.9 52 0.0018 26.6 3.1 44 149-192 172-215 (216)
216 2hf1_A Tetraacyldisaccharide-1 23.6 2.7 9.2E-05 30.4 -4.3 28 196-223 7-38 (68)
217 2zfw_A PEX; five alpha-helices 23.6 51 0.0017 26.8 2.9 44 151-194 75-127 (148)
218 1avs_A Troponin C; muscle cont 23.6 1.1E+02 0.0039 21.0 4.6 70 85-180 6-75 (90)
219 2y43_A E3 ubiquitin-protein li 23.5 41 0.0014 24.6 2.2 26 198-223 44-69 (99)
220 2gnr_A Conserved hypothetical 23.4 11 0.00037 30.9 -1.2 25 196-220 46-70 (145)
221 1xma_A Predicted transcription 23.1 58 0.002 26.2 3.2 44 151-194 73-124 (145)
222 1sd4_A Penicillinase repressor 22.9 2.3E+02 0.0079 20.9 9.9 95 3-109 7-124 (126)
223 2jzy_A Transcriptional regulat 22.8 2.4E+02 0.0081 21.0 6.7 53 3-58 28-82 (112)
224 2qww_A Transcriptional regulat 22.8 2.2E+02 0.0076 21.5 6.6 93 6-110 41-148 (154)
225 2ecw_A Tripartite motif-contai 22.4 42 0.0014 23.3 2.0 27 198-224 40-72 (85)
226 1g25_A CDK-activating kinase a 22.4 60 0.002 21.6 2.7 26 199-224 30-56 (65)
227 1iym_A EL5; ring-H2 finger, ub 22.3 45 0.0015 21.3 2.0 24 199-222 31-54 (55)
228 3tkz_A Tyrosine-protein phosph 22.3 55 0.0019 24.5 2.8 35 150-184 12-50 (109)
229 3i71_A Ethanolamine utilizatio 22.1 88 0.003 22.0 3.4 32 151-183 29-60 (68)
230 1nha_A TFIIF-alpha, transcript 22.0 66 0.0022 24.0 3.0 55 14-79 27-81 (82)
231 1ylf_A RRF2 family protein; st 21.9 74 0.0025 25.3 3.6 43 150-192 40-87 (149)
232 3deu_A Transcriptional regulat 21.8 1.1E+02 0.0037 24.3 4.6 42 150-191 78-125 (166)
233 1bm9_A RTP, TER, replication t 21.7 3E+02 0.01 21.7 7.7 87 89-194 7-106 (122)
234 2cia_A Cytoplasmic protein NCK 21.7 57 0.0019 24.2 2.7 35 150-184 10-48 (102)
235 2ysx_A Signaling inositol poly 21.5 56 0.0019 25.0 2.7 35 150-184 15-53 (119)
236 2lnw_A VAV-2, guanine nucleoti 21.5 38 0.0013 26.4 1.7 34 150-184 27-64 (122)
237 1bja_A Transcription regulator 21.3 71 0.0024 24.3 3.2 34 150-184 41-74 (95)
238 3sqn_A Conserved domain protei 21.3 83 0.0029 30.3 4.4 50 6-64 18-67 (485)
239 2fbh_A Transcriptional regulat 21.2 2.6E+02 0.0088 20.7 8.8 93 5-110 36-141 (146)
240 2zzd_C Thiocyanate hydrolase s 21.2 1.1E+02 0.0039 27.0 4.8 86 9-96 32-137 (243)
241 2opo_A Polcalcin CHE A 3; calc 21.2 1.9E+02 0.0067 19.4 6.0 73 89-193 1-73 (86)
242 2ep4_A Ring finger protein 24; 21.1 49 0.0017 22.6 2.1 25 199-223 40-64 (74)
243 2pex_A Transcriptional regulat 21.1 2.7E+02 0.0093 21.0 8.9 57 54-111 83-149 (153)
244 4ayc_A E3 ubiquitin-protein li 21.0 44 0.0015 26.2 2.1 27 198-224 74-100 (138)
245 2ckl_A Polycomb group ring fin 20.9 56 0.0019 24.3 2.5 28 199-226 38-65 (108)
246 1d4t_A T cell signal transduct 20.8 59 0.002 24.1 2.6 35 150-184 9-47 (104)
247 1xn7_A Hypothetical protein YH 20.7 1.2E+02 0.0043 21.7 4.3 24 151-174 27-50 (78)
248 3u5c_J 40S ribosomal protein S 20.7 72 0.0025 27.5 3.4 58 154-211 70-133 (197)
249 1xd7_A YWNA; structural genomi 20.6 76 0.0026 25.1 3.4 33 150-182 33-66 (145)
250 3ov1_A Growth factor receptor- 20.5 39 0.0013 26.0 1.5 35 150-184 11-49 (117)
No 1
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=100.00 E-value=4.7e-59 Score=424.05 Aligned_cols=207 Identities=27% Similarity=0.483 Sum_probs=189.6
Q ss_pred CCchhhHHHHHHHHhCCCCCHHHHHHHHHHhhCC-CCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEec
Q 022691 3 SLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGK-SPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNN 81 (293)
Q Consensus 3 ~~~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~-~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~ 81 (293)
.|+|+||+||||||+||+|+++++++|++.++.. ....+.+.|++||++||.+|+||+|+|+++++|++|++||||||+
T Consensus 2 ~y~d~hR~fLQa~msrg~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~I~~IN~~L~~l~~~Ir~~~~q~~g~~~y~lVN~ 81 (238)
T 3nw0_A 2 VMTDVHRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKRGVTEDDGRPIYALVNL 81 (238)
T ss_dssp CCCHHHHHHHHHHHHSSEEEHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHGGGTEEEEEEECTTTCCEEEEEEES
T ss_pred CcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhhhcCcEEEEeecCCCCCEEEEEEeC
Confidence 5999999999999999999999999999988752 222356789999999999999999999999999999999999999
Q ss_pred cCchhhhcCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHH
Q 022691 82 VADEQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTL 161 (293)
Q Consensus 82 ~sDe~tklAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL 161 (293)
.+|+++|+||+||++||+|||++||+|++ +++|.+++++|||++. ++ ..++||+++||.+|
T Consensus 82 ~~d~~~klaT~yt~~Ei~~fk~lle~i~~--s~~~~~s~~~~lnl~~---------------~~--~~k~l~~~eae~lL 142 (238)
T 3nw0_A 82 ATTSISKMATDFAENELDLFRKALELIID--SETGFASSTNILNLVD---------------QL--KGKKMRKKEAEQVL 142 (238)
T ss_dssp SSCTTHHHHTTSCHHHHHHHHHHHHHHHH--SSSSCEEHHHHHGGGT---------------TC--SSSCCCHHHHHHHH
T ss_pred CCCHHHhhccCCCHHHHHHHHHHHHHHHh--CCCCceeHHHHHHHHh---------------hc--ccCCCCHHHHHHHH
Confidence 99999999999999999999999999999 5688999999999851 11 24789999999999
Q ss_pred HHHHHCCcccccCCccEEeccchhhchHhHHhcC---CCCCchhhhhHHHhC-----------------------CCCCC
Q 022691 162 DEFVQDQWLCCTPDGKIGLGVRSCLDLRGWFRNL---DVPFCEVCNEAVVKG-----------------------EILCP 215 (293)
Q Consensus 162 ~~Lv~~gWL~~s~~G~y~Lg~RallEL~~yL~~~---~i~~C~~Ck~iv~~g-----------------------~~~CP 215 (293)
++||++|||.. .+|.|+||||+|+||++||+++ .++.|.+|++||++| ...||
T Consensus 143 ~~lv~~gWl~~-~~g~~~l~~R~l~El~~~l~~~~~~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP 221 (238)
T 3nw0_A 143 QKFVQNKWLIE-KEGEFTLHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCP 221 (238)
T ss_dssp HHHHHTTSEEE-ETTEEEECHHHHHHHHHHHHHHCTTTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCT
T ss_pred HHHHHhcchhh-hCCEEEecCccHHHHHHHHHHhcCCCCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCC
Confidence 99999999998 6999999999999999999985 699999999999988 45999
Q ss_pred CCCCCCCCCCCCcc
Q 022691 216 RCGLRWPNQVPKAE 229 (293)
Q Consensus 216 ~C~~~W~~~~~~~~ 229 (293)
.|++.|++..|++.
T Consensus 222 ~C~~~W~~~~~~~~ 235 (238)
T 3nw0_A 222 HCNDYWPHEIPKVF 235 (238)
T ss_dssp TTCCBCCSCCCCCC
T ss_pred CCCCCCCCCCCCCC
Confidence 99999999999887
No 2
>3nw0_B Melanoma-associated antigen G1; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.40 E-value=0.0023 Score=56.94 Aligned_cols=158 Identities=18% Similarity=0.255 Sum_probs=103.0
Q ss_pred hhhHHHHHHHHh----CCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhccc-ccCcEEEEeeecCCCeEEEEEEe
Q 022691 6 WKHHALVQALMT----RGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELS-SCQFELRACRDQYVGQVCYGVVN 80 (293)
Q Consensus 6 ~~HR~fLQalms----rg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~-~l~~eIr~~~~q~~g~~~y~lVN 80 (293)
..-..++|+|+. +-+++-.+..+++..- ..+.|..++..++..|. -||++++.+. .....|+|||
T Consensus 10 ~kv~~LVrflL~k~~~k~pI~r~emlk~V~~~-------y~~~F~~I~~~A~e~L~~vFG~elkEvd---~~~~~YiLv~ 79 (217)
T 3nw0_B 10 LKVSELVQFLLIKDQKKIPIKRADILKHVIGD-------YKDIFPDLFKRAAERLQYVFGYKLVELE---PKSNTYILIN 79 (217)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEHHHHHHHTTGG-------GGGGHHHHHHHHHHHHHHHHCEEEEESS---TTCSEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCccHHHHHHHHhHH-------hhHHHHHHHHHHHHHHHHHcCeEEEEec---CCCceEEEEE
Confidence 334456666653 7788877776544322 24679999999999998 5999999983 3456899999
Q ss_pred ccC-chh-hhcCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHH
Q 022691 81 NVA-DEQ-SKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKE 158 (293)
Q Consensus 81 ~~s-De~-tklAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE 158 (293)
+-. ..- ..+...-..+...++--+|-.|+.+ .++++..+..+....-.+ . . .....--.+..
T Consensus 80 ~L~pl~~~~~l~~~~~~pk~GLL~~IL~~Ifm~---Gn~~~Ee~lw~~L~~lgv---~---~-------g~~h~i~Ge~r 143 (217)
T 3nw0_B 80 TLEPVEEDAEMRGDQGTPTTGLLMIVLGLIFMK---GNTLKETEAWDFLRRLGV---Y---P-------TKKHLIFGDPK 143 (217)
T ss_dssp CSCCCC----CCC-CCCHHHHHHHHHHHHHHHT---TTCBCHHHHHHHHHHC-C---C---C-----------------H
T ss_pred CCCccccCCccCCcccccchhHHHHHHHHHHhc---CCCCCHHHHHHHHHhcCC---C---C-------CCcCCcCCCHH
Confidence 875 222 2366666778899999999999985 458999888765311000 0 0 00111223666
Q ss_pred HHH-HHHHHCCcccccC----C---ccEEeccchhhchH
Q 022691 159 KTL-DEFVQDQWLCCTP----D---GKIGLGVRSCLDLR 189 (293)
Q Consensus 159 ~lL-~~Lv~~gWL~~s~----~---G~y~Lg~RallEL~ 189 (293)
++| +.||++|||.+.. + =.|..||||.+|.-
T Consensus 144 klit~~lV~e~YLey~qvp~sdp~~yeflWGpRA~aEts 182 (217)
T 3nw0_B 144 KLITEDFVRQRYLEYRRIPHTDPVDYEFQWGPRTNLELS 182 (217)
T ss_dssp HHHHHHHHHHTCEECC---------CCEECCHHHHTTCC
T ss_pred HHHHHHHHHcCCeEEEeecCCCCCeEEEEEcCchhhhcC
Confidence 777 8999999998631 1 26889999999853
No 3
>2wa0_A Melanoma-associated antigen 4; immune system, multiple anomalous dispersion, cancer/testis 1.4, melanoma antigen family A 4, CT1.4, MAGE-41; 2.30A {Homo sapiens}
Probab=97.37 E-value=0.00088 Score=60.50 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=102.3
Q ss_pred HHHHHHHH----hCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhccc-ccCcEEEEeeecCCCeEEEEEEeccC
Q 022691 9 HALVQALM----TRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELS-SCQFELRACRDQYVGQVCYGVVNNVA 83 (293)
Q Consensus 9 R~fLQalm----srg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~-~l~~eIr~~~~q~~g~~~y~lVN~~s 83 (293)
..++|+++ .+.+++-.++.+.+. + ...+.|..++...+..|. -|||+++-+.. ....|+|||+..
T Consensus 38 ~~LVrflL~k~~~k~pI~radilk~V~---~----~~~~~f~~I~~~A~~~L~~vFG~eL~Ev~~---~~~~YiLvs~L~ 107 (240)
T 2wa0_A 38 DELAHFLLRKYRAKELVTKAEMLERVI---K----NYKRCFPVIFGKASESLKMIFGIDVKEVDP---TSNTYTLVTCLG 107 (240)
T ss_dssp HHHHHHHHHHHHTTCCEEHHHHHHHTC---T----TCGGGHHHHHHHHHHHHHHHHCEEEEECC-----CCEEEEEEGGG
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHhcCeEEEEEcC---CCCeEEEEeCCC
Confidence 44555555 377777777655422 1 134679999999999999 59999998832 356899999965
Q ss_pred chhhh-cCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHH-
Q 022691 84 DEQSK-LGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTL- 161 (293)
Q Consensus 84 De~tk-lAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL- 161 (293)
-+... +...-..+...|+--+|-.|+.. .++|+..+..+.... . ... .+ .+..---+..++|
T Consensus 108 ~~~~~~l~~~~~~pk~GLL~~IL~~Ifm~---gn~~~Ee~Lw~~L~~--l-gv~---~g-------~~h~ifG~~rklit 171 (240)
T 2wa0_A 108 LSYDGLLGNNQIFPKTGLLIIVLGTIAME---GDSASEEEIWEELGV--M-GVY---DG-------REHTVYGEPRKLLT 171 (240)
T ss_dssp CSCCCCC--CCSSCCHHHHHHHHHHHHHH---SSCEEHHHHHHHHHH--T-TCC---TT-------SCBTTTBCHHHHHH
T ss_pred CccccccccccccchhhHHHHHHHHHHHc---CCCCCHHHHHHHHHh--c-CCC---CC-------CcCcCCCCHHHHHH
Confidence 44332 44444566788999999999985 468998887765210 0 000 00 0011112467788
Q ss_pred HHHHHCCcccccC----C---ccEEeccchhhchH
Q 022691 162 DEFVQDQWLCCTP----D---GKIGLGVRSCLDLR 189 (293)
Q Consensus 162 ~~Lv~~gWL~~s~----~---G~y~Lg~RallEL~ 189 (293)
+.||++|||.+.. + =.|..||||.+|.-
T Consensus 172 ~~~Vkq~YLe~~qv~~sdp~~~ef~WGpRA~aE~s 206 (240)
T 2wa0_A 172 QDWVQENYLEYRQVPGSNPARYEFLWGPRALAETS 206 (240)
T ss_dssp THHHHTTSEEEECC------CCEEEECHHHHHHCC
T ss_pred HHHHHcCCeEEEeecCCCCCeEEEEEcCchhhhcC
Confidence 7899999998742 1 28999999999964
No 4
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.53 E-value=0.00078 Score=50.15 Aligned_cols=34 Identities=32% Similarity=1.024 Sum_probs=29.7
Q ss_pred CCCCchhhhhHHHhC---------------------C--CCCCCCCCCCCCCCCCcc
Q 022691 196 DVPFCEVCNEAVVKG---------------------E--ILCPRCGLRWPNQVPKAE 229 (293)
Q Consensus 196 ~i~~C~~Ck~iv~~g---------------------~--~~CP~C~~~W~~~~~~~~ 229 (293)
.+..|.+|+++++.| . ..||.|+..|+...+++.
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~~ 70 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSG 70 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCCC
Confidence 689999999998876 3 789999999999888765
No 5
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=92.49 E-value=0.17 Score=45.71 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~~y 191 (293)
.+|+++-+-.+|..|++.||+.+..+|.|.||+|. ++|...
T Consensus 55 lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y~LG~~~-~~lg~~ 95 (275)
T 3mq0_A 55 LDLPKSSAHGLLAVMTELDLLARSADGTLRIGPHS-LRWANG 95 (275)
T ss_dssp HTCC--CHHHHHHHHHHTTSEEECTTSEEEECTHH-HHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCEEECCCCcEEehHHH-HHHHHH
Confidence 36888899999999999999999878999999985 456443
No 6
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=91.93 E-value=0.72 Score=36.51 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCcccc
Q 022691 93 YTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCC 172 (293)
Q Consensus 93 yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL~~ 172 (293)
+|+.+-.|++.++..+-. .+.++..++-.. -+++++-+-..|++|++.||+.+
T Consensus 2 ls~~~~~~L~~i~~l~~~----~~~~~~~ela~~-----------------------l~vs~~tvs~~l~~Le~~Glv~r 54 (142)
T 1on2_A 2 TTPSMEMYIEQIYMLIEE----KGYARVSDIAEA-----------------------LAVHPSSVTKMVQKLDKDEYLIY 54 (142)
T ss_dssp CCHHHHHHHHHHHHHHHH----HSSCCHHHHHHH-----------------------HTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CChHHHHHHHHHHHHHhh----cCCCCHHHHHHH-----------------------hCCCHHHHHHHHHHHHHCCCEEE
Confidence 567788888888876654 234555544221 35778888899999999999998
Q ss_pred cCCccEEeccchhhchH
Q 022691 173 TPDGKIGLGVRSCLDLR 189 (293)
Q Consensus 173 s~~G~y~Lg~RallEL~ 189 (293)
.+.+.|.|++...--+.
T Consensus 55 ~~~~~~~LT~~g~~~~~ 71 (142)
T 1on2_A 55 EKYRGLVLTSKGKKIGK 71 (142)
T ss_dssp ETTTEEEECHHHHHHHH
T ss_pred eeCceEEEchhHHHHHH
Confidence 78889999997654433
No 7
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=91.09 E-value=0.55 Score=33.35 Aligned_cols=32 Identities=6% Similarity=0.103 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCccEEec
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLG 181 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg 181 (293)
.+++.+.+...|..|.+.||+..+..|+|.||
T Consensus 35 lglsr~tv~~~l~~L~~~G~I~~~~~G~y~lg 66 (67)
T 2heo_A 35 CQVPKKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67)
T ss_dssp HCSCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HCcCHHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence 36889999999999999999987778999987
No 8
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=88.39 E-value=0.98 Score=39.75 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLR 189 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~ 189 (293)
.+++++-+-.+|+.|++.||+.+..+|.|.||++.+ +|.
T Consensus 33 ~gl~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~-~l~ 71 (249)
T 1mkm_A 33 FNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLI-EYG 71 (249)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEECTTSCEEECTHHH-HHH
T ss_pred HCcCHHHHHHHHHHHHHCCcEEECCCCcEEECHHHH-HHH
Confidence 478999999999999999999986578999999964 443
No 9
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=88.12 E-value=0.39 Score=42.83 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC-ccEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD-GKIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~-G~y~Lg~RallEL~~y 191 (293)
.+|+++-+-.+|..|++.||+.+..+ |.|.||+|.+ +|...
T Consensus 31 lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~~~-~lg~~ 72 (260)
T 3r4k_A 31 SGMNKATVYRLMSELQEAGFVEQVEGARSYRLGPQVL-RLAAL 72 (260)
T ss_dssp HCSCHHHHHHHHHHHHHTTSEEECSSSSEEEECTTHH-HHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHHHH-HHHHH
Confidence 47899999999999999999999776 8999999954 55443
No 10
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=87.83 E-value=0.75 Score=40.41 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC-ccEEeccchh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD-GKIGLGVRSC 185 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~-G~y~Lg~Ral 185 (293)
.+++++-+-.+|+.|++.||+.+..+ |.|.||+|.+
T Consensus 31 ~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~ 67 (241)
T 2xrn_A 31 VGLPRSTVQRIINALEEEFLVEALGPAGGFRLGPALG 67 (241)
T ss_dssp TTSCHHHHHHHHHHHHTTTSEEECGGGCEEEECSHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHH
Confidence 37889999999999999999998654 8999999864
No 11
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=87.22 E-value=1.2 Score=40.02 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=43.0
Q ss_pred CcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchH
Q 022691 115 QGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLR 189 (293)
Q Consensus 115 ~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~ 189 (293)
.+.|+.-..+.+. ..-+++-.-+-..|.+|+.+|||...+.| |.|++++.-.+.
T Consensus 18 g~~i~~~~Li~l~--------------------~~~Gi~e~avRtAlsRL~~~G~L~~~~~G-Y~LT~~~~~~~~ 71 (247)
T 3kfw_X 18 PAWATASELIQLT--------------------ADFGIKETTLRVALTRMVGAGDLVRSADG-YRLSDRLLARQR 71 (247)
T ss_dssp TSCBCHHHHHHHH--------------------TTTTCCHHHHHHHHHHHHHTTSEEEETTE-EEECHHHHHHHH
T ss_pred CCcccHHHHHHHH--------------------HHcCCChHHHHHHHHHHHHcCCeeccCCc-eeeCHHHHHHHH
Confidence 5678877777764 12367778889999999999999988888 999999866554
No 12
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=86.42 E-value=1.9 Score=31.49 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~ 194 (293)
+++.+-+-..|+.|++.||+.+..+| .|.|++..+-+|..+|..
T Consensus 49 ~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l~~ 95 (99)
T 3cuo_A 49 GLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKN 95 (99)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHHH
Confidence 67888899999999999999876655 689999999999988874
No 13
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=85.98 E-value=0.84 Score=36.56 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=45.4
Q ss_pred CchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccCchhhh
Q 022691 40 AHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVADEQSK 88 (293)
Q Consensus 40 ~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~sDe~tk 88 (293)
...+.+.+.|..+|..+..++..++...|+.+|..++-+|+..++++.+
T Consensus 35 ~~~eel~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVIR 83 (117)
T 2hc5_A 35 VSYTNLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIR 83 (117)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEE
Confidence 4678999999999999999999999999999999999999999998755
No 14
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=85.81 E-value=4 Score=31.86 Aligned_cols=74 Identities=3% Similarity=-0.039 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCcc
Q 022691 91 TKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWL 170 (293)
Q Consensus 91 T~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL 170 (293)
..+++.+..+++.++.. .. ..+.++..++-.. .+++.+-+-..|++|++.||+
T Consensus 9 ~~lt~~~~~~L~~l~~l-~~---~~~~~s~~ela~~-----------------------l~is~~tv~~~l~~Le~~Gli 61 (139)
T 2x4h_A 9 SNLSRREFSYLLTIKRY-ND---SGEGAKINRIAKD-----------------------LKIAPSSVFEEVSHLEEKGLV 61 (139)
T ss_dssp --CCHHHHHHHHHHHHH-HT---TTSCBCHHHHHHH-----------------------HTCCHHHHHHHHHHHHHTTSE
T ss_pred hhcCHHHHHHHHHHHHH-Hh---cCCCcCHHHHHHH-----------------------hCCChHHHHHHHHHHHHCCCE
Confidence 35788888888765543 33 1344555554322 357888889999999999999
Q ss_pred cccCCccEEeccchhhchHhHH
Q 022691 171 CCTPDGKIGLGVRSCLDLRGWF 192 (293)
Q Consensus 171 ~~s~~G~y~Lg~RallEL~~yL 192 (293)
.+.. +.|.|++...-....++
T Consensus 62 ~r~~-~~~~Lt~~g~~~~~~~~ 82 (139)
T 2x4h_A 62 KKKE-DGVWITNNGTRSINYLI 82 (139)
T ss_dssp EEET-TEEEECHHHHHHHHHHH
T ss_pred EecC-CeEEEChhHHHHHHHHH
Confidence 9866 88999998765444433
No 15
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=85.35 E-value=2.5 Score=33.01 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~ 194 (293)
-+++.+-+-..|..|.+.||+....+| +|+|++..+.++-.++.+
T Consensus 66 l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~ 113 (122)
T 1u2w_A 66 LGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALA 113 (122)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHHHHHH
Confidence 368899999999999999999876666 699999999999998874
No 16
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=83.57 E-value=0.82 Score=40.61 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~~ 190 (293)
.+++++-+-.+|..|++.||+.+..+|.|.||++. ++|..
T Consensus 48 ~gl~kstv~r~l~tL~~~G~v~~~~~~~Y~lg~~~-~~lg~ 87 (260)
T 2o0y_A 48 TKLPKTTVVRLVATMCARSVLTSRADGSYSLGPEM-LRWVR 87 (260)
T ss_dssp HCCCHHHHHHHHHHHHHTTSEEECTTSCEEECHHH-HHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCEEECCCCeEEecHHH-HHHHH
Confidence 36889999999999999999998777799999995 44543
No 17
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=80.89 E-value=22 Score=30.99 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhccccc--CcEEEEeeecCCCeEEEEEEeccCchhhhcCCCCCH
Q 022691 18 RGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSC--QFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYTV 95 (293)
Q Consensus 18 rg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l--~~eIr~~~~q~~g~~~y~lVN~~sDe~tklAT~yt~ 95 (293)
.|+|+..|+..+|.+..+.+ ..+.++|...+.. |.+| +|+|+++. +|..+.-.++. +++
T Consensus 93 GG~I~L~dl~~~~nraRG~~-lVSp~Dl~~A~~~----l~~Lg~~~~l~~~~---sg~~vvqs~~~-~~~---------- 153 (218)
T 3cuq_B 93 GGIMSLTEVYCLVNRARGME-LLSPEDLVNACKM----LEALKLPLRLRVFD---SGVMVIELQSH-KEE---------- 153 (218)
T ss_dssp TSEEEHHHHHHHHHHTCSSS-CCCHHHHHHHHHT----TTTTTCSEEEEECT---TSBEEEEETTC-CGG----------
T ss_pred CCeEEHHHHHHHHHHHcCCC-CCCHHHHHHHHHH----HHHcCCCEEEEEEC---CCcEEEEcCCC-chH----------
Confidence 79999999999998776642 2444555555444 4454 56666662 44333333322 222
Q ss_pred HHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCccccc
Q 022691 96 QQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCT 173 (293)
Q Consensus 96 ~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL~~s 173 (293)
.+...+++.+ . ..|+++..++-. ..+.+..-|.+.|..++.+|.+.+.
T Consensus 154 ---~~~~~il~~~-~---~~g~vt~~~la~-----------------------~l~ws~~~a~e~L~~~e~~G~l~~D 201 (218)
T 3cuq_B 154 ---EMVASALETV-S---EKGSLTSEEFAK-----------------------LVGMSVLLAKERLLLAEKMGHLCRD 201 (218)
T ss_dssp ---GGHHHHHHHH-H---HTSCBCHHHHHH-----------------------HHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---HHHHHHHHHH-H---HCCCcCHHHHHH-----------------------HhCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2334445433 3 146777766532 1368899999999999999999875
No 18
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=80.89 E-value=2 Score=31.78 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~ 194 (293)
+++.+-+-..|+.|.+.||+....+| +|.|++..+-++..+|.+
T Consensus 47 ~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l~~ 93 (98)
T 3jth_A 47 QLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLLHS 93 (98)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHHHH
Confidence 67888899999999999999877766 699999999999998874
No 19
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=80.23 E-value=1.4 Score=33.34 Aligned_cols=45 Identities=7% Similarity=-0.107 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCcc---EEeccchhhchHhHHhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDGK---IGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~---y~Lg~RallEL~~yL~~ 194 (293)
-+++.+-+-..|+.|.+.||+.+..+|. |.|++..+-++..++..
T Consensus 44 l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~~~ 91 (114)
T 2oqg_A 44 LPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTLER 91 (114)
T ss_dssp SSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHHHH
Confidence 3688889999999999999998765564 99999998888777764
No 20
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=79.04 E-value=1.4 Score=39.21 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~~ 190 (293)
.+++++-+-.+|..|++.||+.+. +|.|.||+|. ++|..
T Consensus 46 ~gl~~stv~r~l~tL~~~G~v~~~-~~~Y~Lg~~~-~~lg~ 84 (265)
T 2ia2_A 46 TDLTRATARRFLLTLVELGYVATD-GSAFWLTPRV-LELGY 84 (265)
T ss_dssp HTCCHHHHHHHHHHHHHHTSEEES-SSEEEECGGG-GGTTH
T ss_pred HCcCHHHHHHHHHHHHHCCCEEec-CCEEEEcHHH-HHHHH
Confidence 368899999999999999999984 6999999995 55654
No 21
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=78.76 E-value=1.7 Score=38.38 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCccEEeccchh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSC 185 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~Ral 185 (293)
.+++++-+-.+|..|++.||+.+. +|.|.||++.+
T Consensus 39 ~gl~~stv~r~l~~L~~~G~v~~~-~~~Y~Lg~~~~ 73 (257)
T 2g7u_A 39 AGLSRPAVRRILLTLQKLGYVAGS-GGRWSLTPRVL 73 (257)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE-TTEEEECGGGH
T ss_pred HCcCHHHHHHHHHHHHHCCCEEeC-CCEEEEcHHHH
Confidence 368899999999999999999985 69999999953
No 22
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=77.98 E-value=3.9 Score=35.20 Aligned_cols=42 Identities=5% Similarity=0.016 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchHhHH
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGWF 192 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~~yL 192 (293)
++++.-+-..|++|.+.||+.+.+++.+.|++...-.....+
T Consensus 31 ~vs~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~~ 72 (214)
T 3hrs_A 31 QVSPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLY 72 (214)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHHH
Confidence 577888889999999999999988899999998765444333
No 23
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=77.68 E-value=2.4 Score=31.63 Aligned_cols=44 Identities=7% Similarity=-0.065 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~ 194 (293)
+++.+-.-..|+.|.+.||+....+| +|.|++..+.++..+|.+
T Consensus 47 ~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~l~~ 93 (102)
T 3pqk_A 47 GIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVNALYT 93 (102)
T ss_dssp TCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHHHHH
Confidence 57777888899999999999876666 799999999999888874
No 24
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=77.12 E-value=5.2 Score=29.03 Aligned_cols=44 Identities=5% Similarity=0.058 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccC---C---ccEEeccchhhchHhHHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTP---D---GKIGLGVRSCLDLRGWFR 193 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~---~---G~y~Lg~RallEL~~yL~ 193 (293)
-+++.+-.-..|++|++.||+.+.. + ..|.|++...-.+..|+.
T Consensus 40 l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~~ 89 (100)
T 1ub9_A 40 LDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLS 89 (100)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHHH
Confidence 3688889999999999999998533 3 379999998877777765
No 25
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=74.51 E-value=5.3 Score=36.18 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~y 191 (293)
-+++..-+-..|.+|+++|||...+.| +|.|++++.-.|+.-
T Consensus 55 ~Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~~g~~~l~~~ 99 (266)
T 3l09_A 55 MGLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSDSALTQTRAV 99 (266)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHTT
T ss_pred cCCCchHHHHHHHHHHHCCCeeeeecCCcceEEECHHHHHHHHHH
Confidence 356777778899999999999987777 999999987776543
No 26
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=74.48 E-value=0.48 Score=38.75 Aligned_cols=30 Identities=27% Similarity=0.788 Sum_probs=25.1
Q ss_pred CCCCchhhhhHHHhC---CCCCCCCCCCCCCCC
Q 022691 196 DVPFCEVCNEAVVKG---EILCPRCGLRWPNQV 225 (293)
Q Consensus 196 ~i~~C~~Ck~iv~~g---~~~CP~C~~~W~~~~ 225 (293)
.+|.|..|..--++- ...||.|.-+|....
T Consensus 26 ~lP~CP~C~seytYeDg~l~vCPeC~hEW~~~~ 58 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGALLVCPECAHEWSPNE 58 (138)
T ss_dssp CSCCCTTTCCCCCEECSSSEEETTTTEEECTTT
T ss_pred cCCCCCCCCCcceEecCCeEECCccccccCCcc
Confidence 689999999987764 679999999997433
No 27
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.97 E-value=6 Score=30.25 Aligned_cols=26 Identities=35% Similarity=0.820 Sum_probs=16.6
Q ss_pred CCchhhhhHHH-hCCCCCCCCCCCCCC
Q 022691 198 PFCEVCNEAVV-KGEILCPRCGLRWPN 223 (293)
Q Consensus 198 ~~C~~Ck~iv~-~g~~~CP~C~~~W~~ 223 (293)
|.|.-|.+-=. .|...||.|++.+..
T Consensus 44 PvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 44 PACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred hhhHHHHHHHHhccCccccccCCcccc
Confidence 34444444322 248899999999974
No 28
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=71.59 E-value=3.2 Score=32.04 Aligned_cols=45 Identities=9% Similarity=0.300 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~ 194 (293)
-+++.+-+-..|..|.+.|++....+| +|.|++..+-++..|+..
T Consensus 41 l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~~ 88 (118)
T 3f6o_A 41 FDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLAE 88 (118)
T ss_dssp CCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHHH
Confidence 478899999999999999999876655 799999999999988874
No 29
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=70.52 E-value=2.9 Score=31.89 Aligned_cols=45 Identities=7% Similarity=0.102 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~ 194 (293)
-+++.+-+-..|+.|.+.||+....+| +|.|.+..+.++..+|.+
T Consensus 48 lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~l~~ 95 (108)
T 2kko_A 48 TGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFALVQV 95 (108)
T ss_dssp HTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHHH
Confidence 368889999999999999999876666 699999999999998874
No 30
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=69.02 E-value=25 Score=26.73 Aligned_cols=93 Identities=10% Similarity=0.021 Sum_probs=49.9
Q ss_pred chhhHHHHHHHHhCC--CCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEecc
Q 022691 5 NWKHHALVQALMTRG--PLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNV 82 (293)
Q Consensus 5 ~~~HR~fLQalmsrg--~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~ 82 (293)
+..+-.+|.+|..+| .++..++...+. .+...+...|+ +|..-|| |.+..++.|+..+++...-.
T Consensus 30 t~~~~~vL~~l~~~~~~~~t~~ela~~l~--------~~~~tvs~~l~----~Le~~Gl-i~r~~~~~D~R~~~~~LT~~ 96 (139)
T 3eco_A 30 TNEQGHTLGYLYAHQQDGLTQNDIAKALQ--------RTGPTVSNLLR----NLERKKL-IYRYVDAQDTRRKNIGLTTS 96 (139)
T ss_dssp CHHHHHHHHHHHHSTTTCEEHHHHHHHHT--------CCHHHHHHHHH----HHHHTTS-EEEEECCC--CCEEEEECHH
T ss_pred CHHHHHHHHHHHhcCCCCcCHHHHHHHhC--------CCcccHHHHHH----HHHHCCC-EeecCCCCCCCeeeeEECHH
Confidence 344555555555554 555555544332 22333444443 4445577 44556667777666654321
Q ss_pred Cc------------hhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 83 AD------------EQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 83 sD------------e~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
.- -..++...++++|++-|..+|+.|..
T Consensus 97 G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 136 (139)
T 3eco_A 97 GIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLS 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 11 12334567888888888888887765
No 31
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=68.97 E-value=16 Score=28.87 Aligned_cols=37 Identities=11% Similarity=-0.035 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLD 187 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallE 187 (293)
+++.+-+-..|++|.+.||+.+...+.+.|++.+.--
T Consensus 65 ~vs~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~ 101 (155)
T 2h09_A 65 GVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKL 101 (155)
T ss_dssp TSCHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEecCCceEEChhHHHH
Confidence 5778888899999999999998767778888766443
No 32
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=67.32 E-value=13 Score=32.75 Aligned_cols=36 Identities=14% Similarity=0.014 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHCCccccc-CCccEEeccchhh
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCT-PDGKIGLGVRSCL 186 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s-~~G~y~Lg~Rall 186 (293)
+++++-+-..|++|.+.||+.+. +.+.|.||++...
T Consensus 177 glsksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~ 213 (244)
T 2wte_A 177 DKSEKTLINKIAELKKFGILTQKGKDRKVELNELGLN 213 (244)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHH
Confidence 67889999999999999999985 3468999998765
No 33
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=66.98 E-value=18 Score=27.87 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=49.3
Q ss_pred chhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEecc--
Q 022691 5 NWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNV-- 82 (293)
Q Consensus 5 ~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~-- 82 (293)
+..+..+|.+|..+|.++..++...+. .+...+...| ++|..-|| |.+..++.|+..+++...-.
T Consensus 36 t~~~~~iL~~l~~~~~~t~~eLa~~l~--------~~~~~vs~~l----~~L~~~Gl-v~r~~~~~D~R~~~~~LT~~G~ 102 (143)
T 3oop_A 36 TPEQWSVLEGIEANEPISQKEIALWTK--------KDTPTVNRIV----DVLLRKEL-IVREISTEDRRISLLSLTDKGR 102 (143)
T ss_dssp CHHHHHHHHHHHHHSSEEHHHHHHHHT--------CCHHHHHHHH----HHHHHTTS-EEEEC----CCSCEEEECHHHH
T ss_pred CHHHHHHHHHHHHcCCcCHHHHHHHHC--------CCHhhHHHHH----HHHHHCCC-eeccCCCccCceeeeeECHHHH
Confidence 444555555555555565555544332 2233333433 34555677 55556666766655543221
Q ss_pred ----------CchhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 83 ----------ADEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 83 ----------sDe~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
..-...+...++++|++-|..+|+.|..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~l~~ 140 (143)
T 3oop_A 103 KETTELRDIVEASCEKMFAGVTRTDLEQFTAILKNIST 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 1112335567888888888888888775
No 34
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=64.29 E-value=14 Score=28.92 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCCccEEeccchh
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSC 185 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~Ral 185 (293)
+++..-+-+-|.+|.+.|++.....|.|.|+++..
T Consensus 40 giS~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~ 74 (111)
T 3b73_A 40 RISKSSVSRRLKKLADHDLLQPLANGVYVITEEGE 74 (111)
T ss_dssp CSCHHHHHHHHHHHHHTTSEEECSTTCEEECHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCCceEEECchHH
Confidence 67888999999999999999987788999999884
No 35
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=64.01 E-value=4.6 Score=31.23 Aligned_cols=45 Identities=16% Similarity=0.075 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~ 194 (293)
-+++.+-+-..|+.|.+.||+....+| +|.|++..+.++-.+|.+
T Consensus 44 lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~~~~~l~~ 91 (118)
T 2jsc_A 44 LGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARALGELVQ 91 (118)
T ss_dssp HSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHHHHHHHCCS
T ss_pred HCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHHHHHHHHHH
Confidence 368899999999999999999876666 699999999888888875
No 36
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=63.96 E-value=15 Score=28.26 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=46.9
Q ss_pred CchhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEecc-
Q 022691 4 LNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNV- 82 (293)
Q Consensus 4 ~~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~- 82 (293)
++..+-.+|.+|..+|.++..++...+. + +...+...|. +|..-|| |.+..++.|+..+++...-.
T Consensus 35 lt~~~~~vL~~l~~~~~~t~~eLa~~l~-~-------~~~tvs~~l~----~L~~~Gl-v~r~~~~~DrR~~~~~LT~~G 101 (142)
T 3ech_A 35 LTPPDVHVLKLIDEQRGLNLQDLGRQMC-R-------DKALITRKIR----ELEGRNL-VRRERNPSDQRSFQLFLTDEG 101 (142)
T ss_dssp CCHHHHHHHHHHHHTTTCCHHHHHHHHC-----------CHHHHHHH----HHHHTTS-EEC----------CCEECHHH
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhC-C-------CHHHHHHHHH----HHHHCCC-EeeccCCCCCCeeeeEECHHH
Confidence 4455666666666666677666655432 1 2233344443 3444566 44455666766655543221
Q ss_pred -----------CchhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 83 -----------ADEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 83 -----------sDe~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
.+-..++...++++|++-|..+|+.|..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 140 (142)
T 3ech_A 102 LAIHLHAELIMSRVHDELFAPLTPVEQATLVHLLDQCLA 140 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 1112335567888888888888888876
No 37
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=63.45 E-value=7 Score=28.76 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchHhHHh
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGWFR 193 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~~yL~ 193 (293)
+++.+-+-..|+.|.+.||+.+.. |.|.|++.. +...||.
T Consensus 54 ~is~~tv~~~L~~L~~~Glv~~~~-g~y~l~~~g--~~~~~l~ 93 (96)
T 1y0u_A 54 SLSKKQLDYHLKVLEAGFCIERVG-ERWVVTDAG--KIVDKIR 93 (96)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEET-TEEEECTTT--CCC----
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEC-CEEEECCCc--hHHHHHh
Confidence 678888999999999999999877 999999874 3334543
No 38
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=61.84 E-value=6.9 Score=29.43 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~ 194 (293)
-+++.+-+-..|+.|.+.||+....+| +|.+++..+.++-..+.+
T Consensus 49 l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~ 96 (106)
T 1r1u_A 49 LNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIH 96 (106)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHHH
Confidence 368888999999999999999876666 699999999998888775
No 39
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=61.63 E-value=22 Score=25.20 Aligned_cols=38 Identities=11% Similarity=-0.217 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHCCccccc--C---CccEEeccchhhch
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCT--P---DGKIGLGVRSCLDL 188 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s--~---~G~y~Lg~RallEL 188 (293)
+++.+-+-..|+.|++.|++.+. . .++|.+.......+
T Consensus 25 gvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~~~~~~ 67 (81)
T 2htj_A 25 AVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGEKQAGQ 67 (81)
T ss_dssp TSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSCSSSSC
T ss_pred CcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChhhhccH
Confidence 67888999999999999999843 2 23666766544443
No 40
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=61.38 E-value=0.8 Score=34.28 Aligned_cols=24 Identities=21% Similarity=0.696 Sum_probs=19.8
Q ss_pred CCCchhhhhHHHh-CCCCCCCCCCC
Q 022691 197 VPFCEVCNEAVVK-GEILCPRCGLR 220 (293)
Q Consensus 197 i~~C~~Ck~iv~~-g~~~CP~C~~~ 220 (293)
+..|.+|..+... ...+||+|+..
T Consensus 15 iLrC~aCf~~t~~~~k~FCp~CGn~ 39 (79)
T 2con_A 15 ILRCHGCFKTTSDMNRVFCGHCGNK 39 (79)
T ss_dssp EEECSSSCCEESCSSCCSCSSSCCS
T ss_pred eeEecccceECCCcccccccccCcc
Confidence 4589999999755 37899999986
No 41
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=61.36 E-value=31 Score=29.57 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchHh
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRG 190 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~~ 190 (293)
+++++-+-.+|++|++.||+.+..++.|.|++...-.+..
T Consensus 35 ~vs~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~ 74 (230)
T 1fx7_A 35 DQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIA 74 (230)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEeCCccEEECHHHHHHHHH
Confidence 5678888889999999999999888889999977655443
No 42
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=60.59 E-value=8.6 Score=28.95 Aligned_cols=42 Identities=10% Similarity=0.100 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCccEEeccchh---hchHhHH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSC---LDLRGWF 192 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~Ral---lEL~~yL 192 (293)
.+++.+.+...|+.|.+.|+..+. .|.|.|+++.. -+|+.|.
T Consensus 30 ~~ls~~~~~~~l~~L~~~GLI~~~-~~~~~LT~kG~~~l~~l~~~~ 74 (95)
T 1r7j_A 30 ANLSYALTGRYIKMLMDLEIIRQE-GKQYMLTKKGEELLEDIRKFN 74 (95)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE-TTEEEECHHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHCCCeEEE-CCeeEEChhHHHHHHHHHHHH
Confidence 378999999999999999999985 56699999876 4444443
No 43
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=60.09 E-value=53 Score=24.73 Aligned_cols=94 Identities=13% Similarity=0.169 Sum_probs=49.0
Q ss_pred CchhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccC
Q 022691 4 LNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVA 83 (293)
Q Consensus 4 ~~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~s 83 (293)
++..+..+|.+|..+|.++..++...+. .+...+...|..+ ..-||=. +..++.|+...++...-..
T Consensus 29 l~~~~~~iL~~l~~~~~~~~~ela~~l~--------is~~~vs~~l~~L----~~~gli~-~~~~~~d~r~~~~~lT~~G 95 (142)
T 3bdd_A 29 ISLTRYSILQTLLKDAPLHQLALQERLQ--------IDRAAVTRHLKLL----EESGYII-RKRNPDNQREVLVWPTEQA 95 (142)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHT--------CCHHHHHHHHHHH----HHTTSEE-EEECSSSTTCEEEEECHHH
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHC--------CCHHHHHHHHHHH----HHCCCEE-ecCCCCCCCeeEEEECHHH
Confidence 3444555566665556666666554432 2334444444443 3446644 4455566655554432221
Q ss_pred chhh-------------hcCCCCCHHHHHHHHHHHHHHHh
Q 022691 84 DEQS-------------KLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 84 De~t-------------klAT~yt~~EI~ffK~lLe~I~~ 110 (293)
-... .+...++++|++.|..+++.|..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~~~~ 135 (142)
T 3bdd_A 96 REALITNPSAHHQAIKTSMNQILTVEESEQFLATLDKLLI 135 (142)
T ss_dssp HHHHTTSCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 1111 24456777777777777777665
No 44
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=58.76 E-value=6.8 Score=31.99 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~ 194 (293)
.+++++-+-.-|+.|.+.||+...++| +|.|++..+-+|..+|..
T Consensus 81 lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l~~ 128 (151)
T 3f6v_A 81 FPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFDS 128 (151)
T ss_dssp SSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHHH
Confidence 468899999999999999999987777 799999999999888763
No 45
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=58.16 E-value=30 Score=25.30 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHCCccccc--CCccEEecc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCT--PDGKIGLGV 182 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s--~~G~y~Lg~ 182 (293)
+++.+.+...|.+|.++|++.+. ..|.|.+.+
T Consensus 38 gvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~ 71 (81)
T 1qbj_A 38 GTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 71 (81)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC-
T ss_pred CcCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeC
Confidence 67889999999999999999863 236777653
No 46
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=56.97 E-value=45 Score=26.08 Aligned_cols=94 Identities=10% Similarity=0.077 Sum_probs=52.2
Q ss_pred CchhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEecc-
Q 022691 4 LNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNV- 82 (293)
Q Consensus 4 ~~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~- 82 (293)
++..+..+|.+|..+|.++..++...+. .+...+.. +=++|..-||= .+..++.|+..+++...-.
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~--------~~~~tvs~----~l~~Le~~Glv-~r~~~~~DrR~~~l~LT~~G 114 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLK--------IDKGTTAR----AIQKLVDEGYV-FRQRDEKDRRSYRVFLTEKG 114 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHT--------CCHHHHHH----HHHHHHHTTSE-EEEECC---CCEEEEECHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHC--------CCHHHHHH----HHHHHHHCCCE-EEecCCCCCCeeEEEECHHH
Confidence 3445566666666666666666654432 12333333 33445556774 4456667776665553321
Q ss_pred -----------CchhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 83 -----------ADEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 83 -----------sDe~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
..-..++...++++|++-|..+|+.|..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 153 (159)
T 3s2w_A 115 KKLEPDMKKIASEWGEILFSSFDDRQRREITNSLEIMFE 153 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1112234567888888888888888876
No 47
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=56.92 E-value=3.8 Score=29.01 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=25.5
Q ss_pred CCCCchhhhhHHHhCCCCCCCCCCCCCCCCCCcc
Q 022691 196 DVPFCEVCNEAVVKGEILCPRCGLRWPNQVPKAE 229 (293)
Q Consensus 196 ~i~~C~~Ck~iv~~g~~~CP~C~~~W~~~~~~~~ 229 (293)
.|..|..|..--+ ...||.|+..-....|-.+
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~~T~~~hParf 36 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGEKTVIPKPPKF 36 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCSBCBCCCCCCC
T ss_pred hceeCCCCCCEec--cccCcCCCCcCCCCCCCCC
Confidence 5788999944333 5689999999999988888
No 48
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=56.03 E-value=37 Score=29.00 Aligned_cols=38 Identities=8% Similarity=0.047 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhch
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDL 188 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL 188 (293)
+++++-+-.+|++|.+.||+.+.+++.+.|++...-.+
T Consensus 35 ~vs~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 35 EQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLA 72 (226)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHHH
Confidence 56788888899999999999997888899998765543
No 49
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=55.81 E-value=22 Score=25.95 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~y 191 (293)
.+++++-+-.+|++|++.||+....++ .|.|++...--+..+
T Consensus 40 l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~ 84 (95)
T 2qvo_A 40 VNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQI 84 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHH
Confidence 367888889999999999999543444 588998876544443
No 50
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=55.73 E-value=28 Score=26.95 Aligned_cols=59 Identities=10% Similarity=-0.013 Sum_probs=29.7
Q ss_pred HHhcccccCcEEEEeeecCCCeEEEEEEecc------------CchhhhcCCCCCHHHHHHHHHHHHHHHhc
Q 022691 52 INKELSSCQFELRACRDQYVGQVCYGVVNNV------------ADEQSKLGTKYTVQQIAFFKGILEAIAQD 111 (293)
Q Consensus 52 IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~------------sDe~tklAT~yt~~EI~ffK~lLe~I~~~ 111 (293)
+=.+|..-||= .+..++.|+..+++..--. ..-...+...++++|++-|..+|+.|+..
T Consensus 74 ~l~~Le~~Glv-~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~l~~~ 144 (150)
T 3fm5_A 74 LVDELEERGLV-VRTLDPSDRRNKLIAATEEGRRLRDDAKARVDAAHGRYFEGIPDTVVNQMRDTLQSIAFP 144 (150)
T ss_dssp HHHHHHTTTSE-EC-----------CEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCE-EeeCCccccchheeeECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 33445555774 4455666766665553321 11123356688999999999999988874
No 51
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=55.17 E-value=11 Score=37.53 Aligned_cols=131 Identities=8% Similarity=0.079 Sum_probs=38.5
Q ss_pred hhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcc-cccCcEEEEeeecCCCeEEEEEEeccCch
Q 022691 7 KHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKEL-SSCQFELRACRDQYVGQVCYGVVNNVADE 85 (293)
Q Consensus 7 ~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L-~~l~~eIr~~~~q~~g~~~y~lVN~~sDe 85 (293)
..+..|++|..++.++-.++..++. + +.......|..+-.+. .-.++--+. | ..|.|.....+.
T Consensus 431 ~~~~iL~~l~~~~~it~~~la~~l~-~-------s~~~~~~~L~~L~~~~~~~~glie~~------g-~~y~L~~~~~~~ 495 (583)
T 3lmm_A 431 RIAIVLYLLFQRPFITIDVVARGLQ-S-------GKEAARNALEAARQTTVAGAPLIIAH------D-GVWLLGNACREI 495 (583)
T ss_dssp HHHHHHHHHHHSSSBCHHHHHHHHT-S-------CHHHHHHHHHHHHTCEETTEESEEEE------T-TEEEECHHHHHH
T ss_pred hHHHHHHHHHHCCCcCHHHHHHHhC-c-------CHHHHHHHHHHHHhhhccccceEEEe------C-CEEEECHHHHHH
Confidence 4567899999999999999988876 2 3455566666654432 213333222 1 246665443222
Q ss_pred hhhc-C-----CCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHH
Q 022691 86 QSKL-G-----TKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEK 159 (293)
Q Consensus 86 ~tkl-A-----T~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~ 159 (293)
..+. . ..|...+-...+.+|-+.+. +.|.|+..++..+ .+++..++..
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~---~~g~it~~di~~l-----------------------~~ls~~qa~~ 549 (583)
T 3lmm_A 496 LRKVEPSPFSPVRYLSTDQAELTNAAMLWLS---EVGDLATSDLMAM-----------------------CGVSRGTAKA 549 (583)
T ss_dssp HTSCC---------------------------------------------------------------------------
T ss_pred hcccccccccccccccCChhHHHHHHHHHHH---HcCCcCHHHHHHH-----------------------HCCCHHHHHH
Confidence 2111 0 11222222233333333333 2566776665433 2577888999
Q ss_pred HHHHHHHCCcccccCCccE
Q 022691 160 TLDEFVQDQWLCCTPDGKI 178 (293)
Q Consensus 160 lL~~Lv~~gWL~~s~~G~y 178 (293)
+|++|+++|=|.....|.+
T Consensus 550 ~L~~Lv~~G~l~~~G~gr~ 568 (583)
T 3lmm_A 550 CVDGLVDEERVVAVGGGRS 568 (583)
T ss_dssp -------------------
T ss_pred HHHHHHHCCcEEEeCCCCc
Confidence 9999999999988766644
No 52
>2jtv_A Protein of unknown function; protein with unknown function RPA3401, northeast structural consortium, NESG, PSI-2, structural genomics; NMR {Rhodopseudomonas palustris}
Probab=55.11 E-value=5.7 Score=28.00 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=21.5
Q ss_pred HHHHHHHHHCCcccc----cCCccEEeccch
Q 022691 158 EKTLDEFVQDQWLCC----TPDGKIGLGVRS 184 (293)
Q Consensus 158 E~lL~~Lv~~gWL~~----s~~G~y~Lg~Ra 184 (293)
+.....||+.|||.+ ++..+|-++-|.
T Consensus 28 q~~yedLVeLGWlkr~~~d~Kst~YqiTeRG 58 (65)
T 2jtv_A 28 QKPFEDLVDLGWLKRSSVDSRATHYQITERG 58 (65)
T ss_dssp HHHHHHHHHHTSEEEEEECSSCEEEEECHHH
T ss_pred cchHHHHHHhcccccccccccceeeehhhcc
Confidence 457789999999998 556788887764
No 53
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=54.72 E-value=29 Score=24.94 Aligned_cols=32 Identities=9% Similarity=-0.002 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC--CccEEecc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP--DGKIGLGV 182 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~--~G~y~Lg~ 182 (293)
+++.+.+...|.+|.++|++.... .|.|.+.|
T Consensus 42 gvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 42 GTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred CcCHHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 678899999999999999998743 36787765
No 54
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=53.87 E-value=11 Score=30.33 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCC-----ccEEeccch------hhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPD-----GKIGLGVRS------CLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~-----G~y~Lg~Ra------llEL~~yL~~ 194 (293)
+++..-.-..|++|++.||+.+... -.|.|++.. +.+|..|...
T Consensus 48 gis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~~l~~l~~w~~~ 102 (146)
T 2f2e_A 48 GLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPLLVAIRQWGED 102 (146)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHHHHHHHHHHHHH
Confidence 6788888899999999999997543 379999975 3456666653
No 55
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=53.39 E-value=53 Score=24.61 Aligned_cols=41 Identities=10% Similarity=0.017 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~ 190 (293)
-+++++-+-.+|++|++.||+.+..+ + .|.|++...--+..
T Consensus 53 l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~ 99 (138)
T 3bpv_A 53 FHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPL 99 (138)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHH
Confidence 36788889999999999999997432 2 37788876544443
No 56
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=53.24 E-value=15 Score=28.03 Aligned_cols=43 Identities=7% Similarity=0.130 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC--CccEEeccc------hhhchHhHHh
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP--DGKIGLGVR------SCLDLRGWFR 193 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~--~G~y~Lg~R------allEL~~yL~ 193 (293)
+++..-.-..|++|.+.|++.+.. ...|+|++. .+.+|..|+.
T Consensus 54 gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~~~l~~l~~w~~ 104 (111)
T 3df8_A 54 GISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSLMPLLQYIS 104 (111)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHHHHHHHHHHHHH
Confidence 678888899999999999999853 579999998 4677777765
No 57
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=53.19 E-value=33 Score=24.15 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCccc
Q 022691 92 KYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLC 171 (293)
Q Consensus 92 ~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL~ 171 (293)
.+|+.|...++.|.+ .+.++..+...... ...+++.+-+-.+|++|++.||+.
T Consensus 6 ~lt~~e~~vL~~L~~--------~~~~t~~ei~~~l~-------------------~~~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 6 QISDAELEVMKVIWK--------HSSINTNEVIKELS-------------------KTSTWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp CCCHHHHHHHHHHHT--------SSSEEHHHHHHHHH-------------------HHSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHc--------CCCCCHHHHHHHHh-------------------hcCCccHHHHHHHHHHHHHCCCeE
Confidence 578888665554432 23566666654320 013577888899999999999999
Q ss_pred ccCCc
Q 022691 172 CTPDG 176 (293)
Q Consensus 172 ~s~~G 176 (293)
+..+|
T Consensus 59 r~~~g 63 (82)
T 1p6r_A 59 HHKEG 63 (82)
T ss_dssp EEEET
T ss_pred EEecC
Confidence 86655
No 58
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=53.10 E-value=11 Score=29.31 Aligned_cols=45 Identities=11% Similarity=0.007 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~ 194 (293)
-+++.+-.-..|+.|.+.||+...++| +|+|++..+.++-..+.+
T Consensus 69 lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~~~l~~ 116 (122)
T 1r1t_A 69 IGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQNALD 116 (122)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHHH
Confidence 368888999999999999999876665 799999998888776653
No 59
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=53.07 E-value=69 Score=24.47 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCL 186 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~Rall 186 (293)
-+++++-+-.+|++|++.||+.+..+ + .|.|++...-
T Consensus 64 l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~ 106 (152)
T 3bj6_A 64 LQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEA 106 (152)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHH
Confidence 46788899999999999999997543 1 6788886543
No 60
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=52.04 E-value=31 Score=26.44 Aligned_cols=57 Identities=7% Similarity=-0.030 Sum_probs=29.8
Q ss_pred HHhcccccCcEEEEeeecCCCeEEEEEEecc-----------CchhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 52 INKELSSCQFELRACRDQYVGQVCYGVVNNV-----------ADEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 52 IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~-----------sDe~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
+=++|..-|| |.+..++.|+..+++...-. .+...... .++++|++-|..+|+.|..
T Consensus 70 ~l~~L~~~Gl-v~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~-~l~~~e~~~l~~~L~~l~~ 137 (140)
T 3hsr_A 70 LLKKLEKKDY-VVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEF-NISEREASDIINNLRNFVS 137 (140)
T ss_dssp HHHHHHHTTS-EEEEC-------CEEEECHHHHHTHHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-eEecCCCCCcceeeeeEChHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 3344555677 44455666766655553221 11122222 8999999999999998876
No 61
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=51.93 E-value=44 Score=25.12 Aligned_cols=41 Identities=10% Similarity=0.183 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~ 190 (293)
-+++++-+-.+|++|++.||+.+..+ + .|.|++.+.--+..
T Consensus 62 l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (140)
T 2nnn_A 62 TAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEA 108 (140)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHH
Confidence 46888999999999999999997432 2 47888876544433
No 62
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=51.84 E-value=61 Score=24.35 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLR 189 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~ 189 (293)
.+++++-+-.+|++|++.||+.+..+ + .|.|++...--+.
T Consensus 58 l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 58 LSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHH
Confidence 46788899999999999999997432 2 4788887654443
No 63
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=51.68 E-value=50 Score=25.44 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc------cEEeccchhhchH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG------KIGLGVRSCLDLR 189 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G------~y~Lg~RallEL~ 189 (293)
-+++++-+-.+|++|++.||+.+..+. .|.|++...--+.
T Consensus 61 l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (155)
T 1s3j_A 61 MEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 106 (155)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHH
Confidence 367888999999999999999875432 5778887644333
No 64
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=51.67 E-value=46 Score=25.22 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~ 190 (293)
-+++++-+-.+|++|++.||+.+..+ + .|.|++...--+..
T Consensus 57 l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (145)
T 2a61_A 57 LGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEK 103 (145)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHH
Confidence 36788899999999999999997532 2 57788776544433
No 65
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=51.65 E-value=17 Score=26.56 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLD 187 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallE 187 (293)
++|..-+..-|..|.+.|+|.++..|.-.=+.|-|+|
T Consensus 35 gvS~~TVrr~L~~Le~kG~I~R~~ggr~~~~~~~~~~ 71 (77)
T 2jt1_A 35 GLSIYQVRLYLEQLHDVGVLEKVNAGKGVPGLWRLLE 71 (77)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEESCSSSSCCEEEECC
T ss_pred CCCHHHHHHHHHHHHHCCcEEecCCCCCcHHHHHHHH
Confidence 5677778999999999999999776654445554444
No 66
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=51.37 E-value=71 Score=24.30 Aligned_cols=43 Identities=2% Similarity=-0.126 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC------ccEEeccchhhchHhHH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRSCLDLRGWF 192 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~RallEL~~yL 192 (293)
-+++++-+-.+|++|++.||+.+..+ -.|.|++...--+..+.
T Consensus 55 l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 103 (145)
T 3g3z_A 55 WSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLT 103 (145)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHH
Confidence 46788899999999999999997543 26889988766554443
No 67
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=51.16 E-value=8.8 Score=26.30 Aligned_cols=29 Identities=28% Similarity=0.616 Sum_probs=19.6
Q ss_pred CchhhhhHHHhCCCCCCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAVVKGEILCPRCGLRWPNQVPK 227 (293)
Q Consensus 199 ~C~~Ck~iv~~g~~~CP~C~~~W~~~~~~ 227 (293)
+|..|-.-.+.....||.|+..|....|.
T Consensus 39 fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 39 FHQVCVDQWLITNKKCPICRVDIEAQLPS 67 (69)
T ss_dssp EEHHHHHHHHHHCSBCTTTCSBSCSCCCC
T ss_pred HHHHHHHHHHHcCCCCcCcCccccCcCCC
Confidence 34444444444467899999999987764
No 68
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=49.79 E-value=4.3 Score=29.52 Aligned_cols=22 Identities=36% Similarity=0.759 Sum_probs=17.3
Q ss_pred CCCchhhhhHHHhCCCCCCCCCCC
Q 022691 197 VPFCEVCNEAVVKGEILCPRCGLR 220 (293)
Q Consensus 197 i~~C~~Ck~iv~~g~~~CP~C~~~ 220 (293)
-+-|..|+-++ ....||+|+..
T Consensus 11 ~~AC~~C~~~~--~~~~CPnC~s~ 32 (69)
T 1ryq_A 11 EKACRHCHYIT--SEDRCPVCGSR 32 (69)
T ss_dssp CEEETTTCBEE--SSSSCTTTCCC
T ss_pred hhhHHhCCccc--cCCcCCCccCC
Confidence 46799999977 65699999743
No 69
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=49.65 E-value=25 Score=25.99 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~ 194 (293)
-+++.+-+-..|+.|.+. |+...++| +|.|++..+.++..||.+
T Consensus 51 l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~~~l~~ 97 (99)
T 2zkz_A 51 LKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGIIKLLNP 97 (99)
T ss_dssp HTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHHHHHHC-
T ss_pred HCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHHHHHHHh
Confidence 367888999999999999 88765666 699999999999998863
No 70
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=49.65 E-value=80 Score=23.68 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCL 186 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~Rall 186 (293)
-+++++-+-.+|++|++.||+.+..+ + .+.|++...-
T Consensus 60 l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~ 102 (141)
T 3bro_A 60 FSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANK 102 (141)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHT
T ss_pred HCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHH
Confidence 36788889999999999999987532 2 6778877643
No 71
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=49.12 E-value=70 Score=24.80 Aligned_cols=40 Identities=3% Similarity=0.062 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC------ccEEeccchhhchH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRSCLDLR 189 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~RallEL~ 189 (293)
-+++++-+-.+|++|++.||+.+..+ -.|.|++...--+.
T Consensus 73 l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 118 (162)
T 2fa5_A 73 TAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYE 118 (162)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHH
Confidence 46788899999999999999997542 35778887654433
No 72
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=49.05 E-value=86 Score=23.85 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEecc---
Q 022691 6 WKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNV--- 82 (293)
Q Consensus 6 ~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~--- 82 (293)
..+-.+|.+|..+|.++..++.+.+. .+...+...|.. |..-||=.+ ..++.|+..+|+...-.
T Consensus 42 ~~~~~iL~~l~~~~~~t~~ela~~l~--------~~~~tvs~~l~~----Le~~Glv~r-~~~~~d~R~~~~~lT~~G~~ 108 (150)
T 2rdp_A 42 PPQFVALQWLLEEGDLTVGELSNKMY--------LACSTTTDLVDR----MERNGLVAR-VRDEHDRRVVRIRLLEKGER 108 (150)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHT--------CCHHHHHHHHHH----HHHTTSEEE-EECCC---CEEEEECHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--------CCchhHHHHHHH----HHHCCCeee-cCCCCCcceeEeEECHhHHH
Confidence 33444444444444455444443321 233444444443 334466444 44555665555443211
Q ss_pred ---------CchhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 83 ---------ADEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 83 ---------sDe~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
..-...+...++++|++-|..+|+.|..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 145 (150)
T 2rdp_A 109 IIEEVIEKRQRDLANVLESFSDEEIVVFERCLRKLHQ 145 (150)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1112224456777777777777776655
No 73
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=48.76 E-value=68 Score=23.41 Aligned_cols=33 Identities=9% Similarity=-0.033 Sum_probs=26.4
Q ss_pred CCCHH-HHHHHHHHHHHCCcccccCCc--cEEeccc
Q 022691 151 NFTMS-QKEKTLDEFVQDQWLCCTPDG--KIGLGVR 183 (293)
Q Consensus 151 ~ls~s-eaE~lL~~Lv~~gWL~~s~~G--~y~Lg~R 183 (293)
+++.. .+-..|..|.++|.+.+...| .|+|++.
T Consensus 36 git~~~aVr~hL~~Le~eGlV~~~~~gRP~w~LT~~ 71 (79)
T 1xmk_A 36 GLTKARDINAVLIDMERQGDVYRQGTTPPIWHLTDK 71 (79)
T ss_dssp CGGGHHHHHHHHHHHHHTTSEEEECSSSCEEEECHH
T ss_pred CCCcHHHHHHHHHHHHHCCCEEecCCCCCCeEeCHh
Confidence 67787 889999999999999865444 6777754
No 74
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=48.50 E-value=44 Score=25.09 Aligned_cols=59 Identities=7% Similarity=0.073 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCcc
Q 022691 91 TKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWL 170 (293)
Q Consensus 91 T~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL 170 (293)
..+|+.|...+..+-+ .+.++..+...... ...+++.+-.-.+|++|++.||+
T Consensus 6 ~~Lt~~q~~vL~~L~~--------~~~~t~~el~~~l~-------------------~~~~~~~~Tvt~~l~rLe~kGlv 58 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD--------KKSVSANEIVVEIQ-------------------KYKEVSDKTIRTLITRLYKKEII 58 (126)
T ss_dssp CCCCHHHHHHHHHHHH--------SSSEEHHHHHHHHH-------------------TTSCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHHh--------cCCCCHHHHHHHHh-------------------hcCCCChhhHHHHHHHHHHCCce
Confidence 3578888776665543 23466666544320 11356788888999999999999
Q ss_pred cccCCc
Q 022691 171 CCTPDG 176 (293)
Q Consensus 171 ~~s~~G 176 (293)
.+..+|
T Consensus 59 ~R~~~~ 64 (126)
T 1sd4_A 59 KRYKSE 64 (126)
T ss_dssp EEEEET
T ss_pred EEEeCC
Confidence 987665
No 75
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=48.29 E-value=25 Score=27.14 Aligned_cols=52 Identities=12% Similarity=0.008 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccC--CccEEeccch----hhchHhHHhcC-CCCCch
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTP--DGKIGLGVRS----CLDLRGWFRNL-DVPFCE 201 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~--~G~y~Lg~Ra----llEL~~yL~~~-~i~~C~ 201 (293)
.+++..-..++|..|.+.||+...+ .|.|.|+... +.|+-..+... .+..|.
T Consensus 36 ~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~itl~di~~~~e~~~~~~~c~ 94 (129)
T 2y75_A 36 NNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDAITAGDIIRVLEGPISPVEVL 94 (129)
T ss_dssp TTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGGCBHHHHHHHHHCCSSCBEEC
T ss_pred HCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHHHCcHHHHHHHHcCcCCcccCC
Confidence 3678899999999999999998642 4789998653 55655555432 344554
No 76
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=47.98 E-value=25 Score=26.48 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=19.1
Q ss_pred CchhhhhHHH-----hCCCCCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAVV-----KGEILCPRCGLRWPNQVP 226 (293)
Q Consensus 199 ~C~~Ck~iv~-----~g~~~CP~C~~~W~~~~~ 226 (293)
+|..|-.--+ .....||.|+..|....+
T Consensus 65 Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 65 FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred ccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 4555655444 346799999999986544
No 77
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=47.94 E-value=77 Score=23.65 Aligned_cols=93 Identities=6% Similarity=0.072 Sum_probs=49.9
Q ss_pred chhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccC-
Q 022691 5 NWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVA- 83 (293)
Q Consensus 5 ~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~s- 83 (293)
+..+..+|.+|..+|.++..++...+. .+...+...|... ..-||= .+..++.|+..+|+...-..
T Consensus 32 ~~~~~~iL~~l~~~~~~~~~ela~~l~--------~~~~tvs~~l~~L----~~~gli-~r~~~~~d~r~~~~~lT~~G~ 98 (139)
T 3bja_A 32 SYVQFGVIQVLAKSGKVSMSKLIENMG--------CVPSNMTTMIQRM----KRDGYV-MTEKNPNDQRETLVYLTKKGE 98 (139)
T ss_dssp CHHHHHHHHHHHHSCSEEHHHHHHHCS--------SCCTTHHHHHHHH----HHTTSE-EEEECSSCTTCEEEEECHHHH
T ss_pred CHHHHHHHHHHHHcCCcCHHHHHHHHC--------CChhHHHHHHHHH----HHCCCe-eeccCCCCCceeEEEECHHHH
Confidence 344555666665566666555544321 1233444544443 334664 44455666666655543221
Q ss_pred -----------chhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 84 -----------DEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 84 -----------De~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
.-...+...++++|++-|..+|+.|..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 136 (139)
T 3bja_A 99 ETKKQVDVQYSDFLKENCGCFTKEEEGILEDLLLKWKK 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 112235567778888777777777765
No 78
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=47.09 E-value=66 Score=24.07 Aligned_cols=23 Identities=13% Similarity=-0.034 Sum_probs=11.5
Q ss_pred cccccCcEEEEeeecCCCeEEEEE
Q 022691 55 ELSSCQFELRACRDQYVGQVCYGV 78 (293)
Q Consensus 55 ~L~~l~~eIr~~~~q~~g~~~y~l 78 (293)
+|..-||=. +..++.|+..+++.
T Consensus 75 ~L~~~glv~-r~~~~~d~R~~~~~ 97 (140)
T 2nnn_A 75 RLDKRGLIQ-RSADPDDGRRLLVS 97 (140)
T ss_dssp HHHHTTCEE-EEEETTEEEEEEEE
T ss_pred HHHHCCCEE-eeCCCCCCCeeeeE
Confidence 344446643 44455565555543
No 79
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=46.98 E-value=1.8e+02 Score=28.90 Aligned_cols=112 Identities=11% Similarity=0.012 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHh-h-CCCCCCchhhHHHHHHHHHhcccccC--cE-EEEeeecCCCeEEEEEEeccCchhhhcCCC
Q 022691 18 RGPLKEKDFHAIFSGL-T-GKSPGAHQGLFNEYLLNINKELSSCQ--FE-LRACRDQYVGQVCYGVVNNVADEQSKLGTK 92 (293)
Q Consensus 18 rg~l~e~e~~~l~~~~-~-~~~p~~~~~~l~~~I~~IN~~L~~l~--~e-Ir~~~~q~~g~~~y~lVN~~sDe~tklAT~ 92 (293)
-|+|+..|+.++|.+. . +.+ ..+.++|...+. +|..|+ |. ++++. +| ++|+ .....+
T Consensus 432 GGmItL~DL~~~~NRa~R~g~e-lISp~Dll~A~~----~le~Lg~~~~~L~~~~---sg--vlVv-s~~~~~------- 493 (566)
T 1w7p_D 432 YMIITLVDLYAMYNKSMRIGTG-LISPMEMREACE----RFEHLGLNELKLVKVN---KR--ILCV-TSEKFD------- 493 (566)
T ss_dssp CCEEEHHHHHHHHHHHTTTTTC-CCCHHHHHHHHT----TGGGGTCTTCEEEECS---SS--CEEE-ESSCHH-------
T ss_pred cCeEEHHHHHHHHHHhccCCCC-ccCHHHHHHHHH----HHHHcCCCeEEEEEEC---CE--EEEE-cCCCch-------
Confidence 3999999999999876 5 322 244455554443 455554 55 55552 33 5553 322111
Q ss_pred CCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCcccc
Q 022691 93 YTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCC 172 (293)
Q Consensus 93 yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL~~ 172 (293)
....++++ ++. ..|.++..++-.... ... ..-+++..-|.+.|..++++|.|.+
T Consensus 494 ------~~~~~il~-l~~---~~g~vT~~~la~~lg--------~~~--------~~~~Ws~~~A~e~L~~~e~eG~l~r 547 (566)
T 1w7p_D 494 ------VVKEKLVD-LIG---DNPGSDLLRLTQILS--------SNN--------SKSNWTLGILMEVLQNCVDEGDLLI 547 (566)
T ss_dssp ------HHHHHHHH-HHT---TSTTCCHHHHHHHHS--------CSS--------SCCCBCHHHHHHHHHHHHHTTSEEE
T ss_pred ------HHHHHHHH-HHH---hcCCcCHHHHHHHhC--------Ccc--------ccCcccHHHHHHHHHHHHHcCCEEE
Confidence 44555555 444 257788776543210 000 1235899999999999999999987
Q ss_pred c
Q 022691 173 T 173 (293)
Q Consensus 173 s 173 (293)
.
T Consensus 548 D 548 (566)
T 1w7p_D 548 D 548 (566)
T ss_dssp E
T ss_pred E
Confidence 4
No 80
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=46.90 E-value=65 Score=24.39 Aligned_cols=41 Identities=5% Similarity=0.010 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~ 190 (293)
-+++++-+-.+|++|++.||+.+..+ + .|.|++...--+..
T Consensus 53 l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 99 (144)
T 1lj9_A 53 IKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPI 99 (144)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHH
Confidence 36788889999999999999987532 2 47888876544433
No 81
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=46.86 E-value=1.1 Score=33.78 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCCCCCcc
Q 022691 211 EILCPRCGLRWPNQVPKAE 229 (293)
Q Consensus 211 ~~~CP~C~~~W~~~~~~~~ 229 (293)
..+||+|+.++-|......
T Consensus 51 ~FkCP~CgEEFyG~~Lp~~ 69 (95)
T 2k5c_A 51 VFKCPVCGEEFYGKTLPRR 69 (95)
T ss_dssp EEECTTTCCEEETTSSCTT
T ss_pred hhcCCCccHHHhcccCChH
Confidence 6799999999887655443
No 82
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=46.69 E-value=5.2 Score=28.32 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=25.0
Q ss_pred CCCCchhhhhHHHhCCCCCCCCCCCCCCCCCCcc
Q 022691 196 DVPFCEVCNEAVVKGEILCPRCGLRWPNQVPKAE 229 (293)
Q Consensus 196 ~i~~C~~Ck~iv~~g~~~CP~C~~~W~~~~~~~~ 229 (293)
.|..|..|..--+ ...||.|+..-....|-.+
T Consensus 4 ~mr~C~~Cg~YTL--k~~CP~CG~~t~~ahParf 35 (60)
T 2aus_D 4 RIRKCPKCGRYTL--KETCPVCGEKTKVAHPPRF 35 (60)
T ss_dssp CCEECTTTCCEES--SSBCTTTCSBCEESSCCCC
T ss_pred cceECCCCCCEEc--cccCcCCCCccCCCCCCCC
Confidence 5778999954433 5689999999888888887
No 83
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=46.34 E-value=14 Score=25.01 Aligned_cols=28 Identities=29% Similarity=0.634 Sum_probs=20.0
Q ss_pred CchhhhhHHHhCCCCCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAVVKGEILCPRCGLRWPNQVP 226 (293)
Q Consensus 199 ~C~~Ck~iv~~g~~~CP~C~~~W~~~~~ 226 (293)
+|..|-.-.+.....||.|+..+.....
T Consensus 28 fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 55 (68)
T 1chc_A 28 FCYVCITRWIRQNPTCPLCKVPVESVVH 55 (68)
T ss_dssp ESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred eHHHHHHHHHhCcCcCcCCChhhHhhhh
Confidence 5666666555557799999999875443
No 84
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=46.21 E-value=86 Score=23.75 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccC---C---ccEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTP---D---GKIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~---~---G~y~Lg~RallEL~~ 190 (293)
.+++++-+-.+|++|++.||+.+.. + -.+.|++...--+..
T Consensus 63 l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~ 109 (127)
T 2frh_A 63 LNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIES 109 (127)
T ss_dssp SSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 4677888899999999999999742 2 367888876544443
No 85
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=46.20 E-value=40 Score=25.71 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=51.6
Q ss_pred CchhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccC
Q 022691 4 LNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVA 83 (293)
Q Consensus 4 ~~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~s 83 (293)
++..+..+|.+|..+| ++..++...+. .+...+...| ..|..-||= .+..++.|+..+++.+.-..
T Consensus 36 lt~~~~~iL~~l~~~~-~t~~eLa~~l~--------~s~~tvs~~l----~~L~~~Glv-~r~~~~~d~R~~~~~lT~~g 101 (146)
T 3tgn_A 36 LTNTQEHILMLLSEES-LTNSELARRLN--------VSQAAVTKAI----KSLVKEGML-ETSKDSKDARVIFYQLTDLA 101 (146)
T ss_dssp CCHHHHHHHHHHTTCC-CCHHHHHHHHT--------CCHHHHHHHH----HHHHHTTSE-EC----------CCEECGGG
T ss_pred CCHHHHHHHHHHHhCC-CCHHHHHHHHC--------CCHHHHHHHH----HHHHHCCCe-EeccCCCCCceeEEEECHhH
Confidence 3667888888888888 99888877653 2233344444 345556764 44555666666555543322
Q ss_pred ch---------------hhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 84 DE---------------QSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 84 De---------------~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
-. ...+...++++|++-|..+++.|..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 143 (146)
T 3tgn_A 102 RPIAEEHHHHHEHTLLTYEQVATQFTPNEQKVIQRFLTALVG 143 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 11 1224457888888888888887765
No 86
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=46.02 E-value=46 Score=24.95 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHhH
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRGW 191 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~y 191 (293)
+++++-+-.+|++|++.||+.+..+ + .|.|++...--+..+
T Consensus 58 ~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (139)
T 3bja_A 58 GCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQV 104 (139)
T ss_dssp SSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHH
Confidence 5667777889999999999987422 2 478888766544443
No 87
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=46.02 E-value=78 Score=24.30 Aligned_cols=37 Identities=11% Similarity=-0.024 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCL 186 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~Rall 186 (293)
-+++++-+-.+|++|++.||+.+..+ + .|.|++...-
T Consensus 71 l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~ 113 (153)
T 2pex_A 71 LYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRA 113 (153)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHH
T ss_pred hCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHH
Confidence 36788899999999999999998543 2 5778877653
No 88
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=45.84 E-value=63 Score=24.58 Aligned_cols=41 Identities=5% Similarity=-0.140 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~ 190 (293)
-+++++-+-.+|++|++.||+.+..+ + .+.|++.+.--+..
T Consensus 61 l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 107 (142)
T 3ech_A 61 MCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLH 107 (142)
T ss_dssp HC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHH
Confidence 35777788899999999999997543 2 47888876544443
No 89
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=45.78 E-value=21 Score=26.10 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCcccccC
Q 022691 95 VQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCTP 174 (293)
Q Consensus 95 ~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL~~s~ 174 (293)
..++.-|..-|.-|+.+ -|+++-..+-+.-. .. +. .+ ....+.|..|-+.+|+++|++|=|....
T Consensus 3 ee~~~v~w~yI~GMLtN---~~slpl~RIh~mLk---mf-~~--~~------~~~~~it~~eL~~fL~~~v~e~kL~~~~ 67 (74)
T 1ldd_A 3 ELTLQRSLPFIEGMLTN---LGAMKLHKIHSFLK---IT-VP--KD------WGYNRITLQQLEGYLNTLADEGRLKYIA 67 (74)
T ss_dssp HHHHHHHHHHHHHHHHH---HCSEEHHHHHHHHH---HH-SC--GG------GCCTTCCHHHHHHHHHHHHHTTSEECCT
T ss_pred HHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHH---Hh-CC--CC------CCCCcCCHHHHHHHHHHHHhCCeEEEeC
Confidence 45677777777777773 24455444433210 00 00 00 0223467899999999999999999768
Q ss_pred CccEEe
Q 022691 175 DGKIGL 180 (293)
Q Consensus 175 ~G~y~L 180 (293)
.|.|.|
T Consensus 68 gG~YkL 73 (74)
T 1ldd_A 68 NGSYEI 73 (74)
T ss_dssp TTEEEE
T ss_pred CCEEeC
Confidence 899987
No 90
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=45.25 E-value=71 Score=24.53 Aligned_cols=42 Identities=17% Similarity=-0.043 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc------cEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG------KIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G------~y~Lg~RallEL~~y 191 (293)
-+++++-+-.+|++|++.||+.+..+. .+.|++...--+...
T Consensus 64 l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 111 (150)
T 3fm5_A 64 MGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDA 111 (150)
T ss_dssp HTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHH
T ss_pred HCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHH
Confidence 468889999999999999999985432 378888765444443
No 91
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=44.81 E-value=1.8 Score=31.29 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=26.1
Q ss_pred hHhHHhcCCCCCchhhhhHHH----hCCCCCCCCCCCCCC
Q 022691 188 LRGWFRNLDVPFCEVCNEAVV----KGEILCPRCGLRWPN 223 (293)
Q Consensus 188 L~~yL~~~~i~~C~~Ck~iv~----~g~~~CP~C~~~W~~ 223 (293)
|..+|. +|..|-.|+.-.. .|...||.|+..||-
T Consensus 3 md~~LL--eiL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI 40 (67)
T 2jny_A 3 LDPQLL--EVLACPKDKGPLRYLESEQLLVNERLNLAYRI 40 (67)
T ss_dssp SCGGGT--CCCBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred CCHHHH--HHhCCCCCCCcCeEeCCCCEEEcCCCCccccC
Confidence 445566 7889999998643 346689999999983
No 92
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=44.71 E-value=18 Score=28.86 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC------ccEEeccc------hhhchHhHHhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVR------SCLDLRGWFRN 194 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~R------allEL~~yL~~ 194 (293)
.+++..-.-..|++|+++|++.+... -.|+|++. .+.+|..|-..
T Consensus 50 ~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~ 106 (131)
T 4a5n_A 50 PSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGES 106 (131)
T ss_dssp TTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHH
Confidence 36788888999999999999997532 38999998 46666666554
No 93
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=44.44 E-value=52 Score=24.91 Aligned_cols=62 Identities=10% Similarity=0.186 Sum_probs=30.8
Q ss_pred chhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEE
Q 022691 5 NWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVV 79 (293)
Q Consensus 5 ~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lV 79 (293)
+..+-.+|.+|..+|.++..++...+. .+...+...|.. |..-||= .+..++.|+..+++..
T Consensus 32 ~~~~~~iL~~l~~~~~~~~~~la~~l~--------~s~~tvs~~l~~----L~~~glv-~r~~~~~d~r~~~~~l 93 (145)
T 2a61_A 32 TPAQFDILQKIYFEGPKRPGELSVLLG--------VAKSTVTGLVKR----LEADGYL-TRTPDPADRRAYFLVI 93 (145)
T ss_dssp CHHHHHHHHHHHHHCCBCHHHHHHHHT--------CCHHHHHHHHHH----HHHTTSE-EEEEETTEEEEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--------CCchhHHHHHHH----HHHCCCe-eecCCCCCCceEEEEE
Confidence 344555566665566666666554432 233444444443 4444663 4444555555555443
No 94
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=44.11 E-value=67 Score=26.22 Aligned_cols=63 Identities=11% Similarity=0.151 Sum_probs=45.7
Q ss_pred chhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEe
Q 022691 5 NWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVN 80 (293)
Q Consensus 5 ~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN 80 (293)
..+|..+++.|-.+++.+.+|+...++.. |.+ .++..+.-.|.++ .+.++.. .+|..+|++-+
T Consensus 4 ~~R~~~I~~li~~~~~~tq~eL~~~L~~~-G~~--VtqaTisRDL~eL---------~~vKv~~-~~g~~~Y~lp~ 66 (149)
T 1b4a_A 4 GQRHIKIREIIMSNDIETQDELVDRLREA-GFN--VTQATVSRDIKEM---------QLVKVPM-ANGRYKYSLPS 66 (149)
T ss_dssp CHHHHHHHHHHHHSCCCSHHHHHHHHHHT-TCC--CCHHHHHHHHHHT---------TCEEEEC-SSSCEEEECTT
T ss_pred HHHHHHHHHHHHHCCCccHHHHHHHHHHc-CCC--cCHHHHHHHHHHc---------CCeEEEC-CCCCEEEEeCC
Confidence 36889999999999999999999988744 432 4666666655544 3456655 45888888844
No 95
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=44.07 E-value=6.5 Score=30.85 Aligned_cols=28 Identities=21% Similarity=0.601 Sum_probs=20.7
Q ss_pred CCCCchhhhhHHHhC---CCCCCCCCCCCCC
Q 022691 196 DVPFCEVCNEAVVKG---EILCPRCGLRWPN 223 (293)
Q Consensus 196 ~i~~C~~Ck~iv~~g---~~~CP~C~~~W~~ 223 (293)
.-+.|.-|.-....+ ..+||.|+.+|-.
T Consensus 66 ~p~~C~~CG~~F~~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 66 KPAQCRKCGFVFKAEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CCCBBTTTCCBCCCCSSCCSSCSSSCCCCBC
T ss_pred ECcChhhCcCeecccCCCCCCCcCCCCCccC
Confidence 457899998774222 5799999999854
No 96
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=43.63 E-value=86 Score=23.84 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccC---Cc---cEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTP---DG---KIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~---~G---~y~Lg~RallEL~~y 191 (293)
-+++++-+-.+|++|++.||+.+.. ++ .|.|++...--+..+
T Consensus 66 l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 113 (150)
T 2rdp_A 66 MYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEV 113 (150)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHH
T ss_pred HCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHH
Confidence 3678888999999999999998743 22 478888765544433
No 97
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=43.52 E-value=1e+02 Score=23.36 Aligned_cols=42 Identities=7% Similarity=-0.017 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccC------CccEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTP------DGKIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~------~G~y~Lg~RallEL~~y 191 (293)
-+++++-+-.+|++|++.||+.+.. .-.+.|++...--+...
T Consensus 64 l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~ 111 (148)
T 3nrv_A 64 LGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVA 111 (148)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHH
Confidence 3678888999999999999999753 23678887765544443
No 98
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=43.45 E-value=26 Score=26.61 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC---CccEEeccchhhchHhHHhcCCCCCc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP---DGKIGLGVRSCLDLRGWFRNLDVPFC 200 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~---~G~y~Lg~RallEL~~yL~~~~i~~C 200 (293)
+++....=-+|.+|.++||+.... .-.|.|++...-+|..|+..-....|
T Consensus 41 ~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~~~~~~~ 93 (99)
T 2co5_A 41 DISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFFKKIVC 93 (99)
T ss_dssp BCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHhHHhhhh
Confidence 356667778999999999998643 24799999999999999876433334
No 99
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=43.44 E-value=82 Score=24.89 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~ 190 (293)
-+++++-+-.+|++|++.||+.+..+ + .|.|++...--+..
T Consensus 69 l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 115 (168)
T 2nyx_A 69 LGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQ 115 (168)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 46788899999999999999987432 2 47888877544443
No 100
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=42.83 E-value=61 Score=24.55 Aligned_cols=41 Identities=12% Similarity=-0.074 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHhH
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRGW 191 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~y 191 (293)
+++++-+-.+|++|++.||+.+..+ + .|.|++...--+..+
T Consensus 62 ~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 108 (142)
T 2bv6_A 62 ALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPEL 108 (142)
T ss_dssp TCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHH
Confidence 5667777889999999999987543 2 677888775544443
No 101
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=42.71 E-value=88 Score=24.41 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC------ccEEeccchhhchHhHH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRSCLDLRGWF 192 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~RallEL~~yL 192 (293)
.++++.-+-.+|++|++.||+.+..+ -.+.|++...--+....
T Consensus 77 l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 125 (161)
T 3e6m_A 77 GVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS 125 (161)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH
Confidence 46889999999999999999997543 26888887765444443
No 102
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=42.58 E-value=68 Score=24.06 Aligned_cols=40 Identities=8% Similarity=-0.068 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLR 189 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~ 189 (293)
-+++++-+-.+|++|++.||+.+..+ + .|.|++...--+.
T Consensus 60 l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (142)
T 2fbi_A 60 ACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 105 (142)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHH
Confidence 46788899999999999999987532 2 4778877654443
No 103
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=41.96 E-value=1.1e+02 Score=23.09 Aligned_cols=42 Identities=5% Similarity=0.067 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC------ccEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~RallEL~~y 191 (293)
-+++++-+-.+|++|++.||+.+..+ -.|.|++.+.--+...
T Consensus 61 l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 108 (143)
T 3oop_A 61 TKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTEL 108 (143)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHH
T ss_pred HCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHH
Confidence 46788899999999999999997542 2688888765544443
No 104
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=41.92 E-value=1e+02 Score=23.84 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccC---Cc---cEEeccchhhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTP---DG---KIGLGVRSCLD 187 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~---~G---~y~Lg~RallE 187 (293)
-+++++-+-.+|++|++.||+.+.. ++ .|.|++...--
T Consensus 76 l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~ 119 (162)
T 3cjn_A 76 AVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAV 119 (162)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHH
T ss_pred HCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHH
Confidence 3678889999999999999998743 22 47788865433
No 105
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=41.49 E-value=14 Score=26.88 Aligned_cols=43 Identities=9% Similarity=0.104 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCCc---------cEEeccchhhchHhHHh
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPDG---------KIGLGVRSCLDLRGWFR 193 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~G---------~y~Lg~RallEL~~yL~ 193 (293)
+++.+-+-..|+.|++.||+.+...+ .|.+++..+-++.+++.
T Consensus 47 ~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~~~~~~ 98 (109)
T 2d1h_A 47 KLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDLL 98 (109)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHHHHHHH
Confidence 67888899999999999999875442 35666655555555554
No 106
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=41.28 E-value=1.1e+02 Score=23.24 Aligned_cols=94 Identities=4% Similarity=0.074 Sum_probs=52.7
Q ss_pred CchhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEecc-
Q 022691 4 LNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNV- 82 (293)
Q Consensus 4 ~~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~- 82 (293)
++..+..+|.+|..+|.++..++...+. .+...+...|...-.+ ||=.+ ..++.|+..+++...-.
T Consensus 38 l~~~~~~iL~~l~~~~~~t~~ela~~l~--------~~~~tvs~~l~~Le~~----Glv~r-~~~~~D~R~~~~~lT~~G 104 (148)
T 3nrv_A 38 IGMTEWRIISVLSSASDCSVQKISDILG--------LDKAAVSRTVKKLEEK----KYIEV-NGHSEDKRTYAINLTEMG 104 (148)
T ss_dssp CCHHHHHHHHHHHHSSSBCHHHHHHHHT--------CCHHHHHHHHHHHHHT----TSEEC----------CCBEECHHH
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHHHHHC--------CCHHHHHHHHHHHHHC----CCEEe-ecCCCCcceeEeEECHhH
Confidence 4566777888888888888777765543 2344555555554443 66443 44556665554443221
Q ss_pred -----------CchhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 83 -----------ADEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 83 -----------sDe~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
..-...+-..++++|++-|..+|+.|..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 143 (148)
T 3nrv_A 105 QELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRN 143 (148)
T ss_dssp HHHHHHHHHHTHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1122335667899999999888888876
No 107
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=40.88 E-value=1e+02 Score=23.59 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC------ccEEeccchhhchHhHHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRSCLDLRGWFR 193 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~RallEL~~yL~ 193 (293)
-+++++-+-.+|++|++.||+.+..+ -.|.|++.+.--+..+..
T Consensus 65 l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 114 (149)
T 4hbl_A 65 LDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFE 114 (149)
T ss_dssp HTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHHH
Confidence 46788899999999999999997532 268899887766555443
No 108
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=40.42 E-value=1.2e+02 Score=23.12 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHCCcccc--c---CCc---cEEeccchhhchH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCC--T---PDG---KIGLGVRSCLDLR 189 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~--s---~~G---~y~Lg~RallEL~ 189 (293)
-+++++-+-.+|++|++.||+.+ . .++ .|.|++...--+.
T Consensus 65 l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~ 112 (154)
T 2qww_A 65 LIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSK 112 (154)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHH
Confidence 36788889999999999999998 3 233 6888887654433
No 109
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=40.33 E-value=37 Score=25.80 Aligned_cols=43 Identities=5% Similarity=-0.034 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccC---C-ccEEeccchhhchHhHH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTP---D-GKIGLGVRSCLDLRGWF 192 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~---~-G~y~Lg~RallEL~~yL 192 (293)
-+++++-+-.+|++|++.||+.+.. + ..|.+++..+..+..++
T Consensus 51 l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~~~~~~~~~~~ 97 (152)
T 1ku9_A 51 LKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKDIA 97 (152)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeecchHHHHHHHH
Confidence 4678889999999999999999852 2 46777776544444443
No 110
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=40.22 E-value=96 Score=25.21 Aligned_cols=43 Identities=2% Similarity=-0.032 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC------ccEEeccchhhchHhHH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRSCLDLRGWF 192 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~RallEL~~yL 192 (293)
.+++++-+-.+|++|++.||+.+..+ -.+.|++.+.--+..+.
T Consensus 67 l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 115 (189)
T 3nqo_A 67 MGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS 115 (189)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 46788889999999999999997432 36788877654444333
No 111
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=40.18 E-value=1.1e+02 Score=22.69 Aligned_cols=93 Identities=14% Similarity=0.146 Sum_probs=50.5
Q ss_pred chhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccC-
Q 022691 5 NWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVA- 83 (293)
Q Consensus 5 ~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~s- 83 (293)
+..+-.+|.+|..+|.++..++.+.+. .+...+...|. .|..-||= .+..++.|+..+++...-..
T Consensus 28 ~~~~~~iL~~l~~~~~~~~~ela~~l~--------~s~~tvs~~l~----~L~~~glv-~~~~~~~d~R~~~~~lT~~G~ 94 (138)
T 3bpv_A 28 TDAQVACLLRIHREPGIKQDELATFFH--------VDKGTIARTLR----RLEESGFI-EREQDPENRRRYILEVTRRGE 94 (138)
T ss_dssp CHHHHHHHHHHHHSTTCBHHHHHHHHT--------CCHHHHHHHHH----HHHHTTSE-EEEEETTEEEEEEEEECHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--------CCHHHHHHHHH----HHHHCCCE-EeecCCCCceeEEeeECHhHH
Confidence 344555566666666666666554432 22334444443 34444663 34455566665555433211
Q ss_pred -----------chhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 84 -----------DEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 84 -----------De~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
.-..++...++++|++-|..+++.|..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~~~~ 132 (138)
T 3bpv_A 95 EIIPLILKVEERWEDLLFRDFTEDERKLFRKMCRRLAE 132 (138)
T ss_dssp HTHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 112235567888888888888887765
No 112
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=39.91 E-value=19 Score=27.16 Aligned_cols=45 Identities=11% Similarity=-0.090 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc---cEEeccchhhchHhHHhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG---KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G---~y~Lg~RallEL~~yL~~ 194 (293)
-+++.+-+-..|+.|.+.||+.+.++| +|+++...+.++-..+.+
T Consensus 55 l~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~~~~~~~ 102 (119)
T 2lkp_A 55 IGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQLLDEAIY 102 (119)
T ss_dssp HSSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHHHHHHHH
Confidence 367888999999999999999876555 588998887777666553
No 113
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=39.83 E-value=21 Score=26.68 Aligned_cols=34 Identities=6% Similarity=-0.122 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCC------ccEEeccch
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRS 184 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~Ra 184 (293)
+++..-.-..|++|.+.||+.+..+ -.|.|++..
T Consensus 50 gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G 89 (107)
T 2fsw_A 50 GISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLG 89 (107)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH
T ss_pred cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccH
Confidence 4788888999999999999987543 369999976
No 114
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=39.79 E-value=1.1e+02 Score=22.86 Aligned_cols=41 Identities=10% Similarity=-0.017 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~ 190 (293)
.+++++-+-.+|++|++.||+.+..+ + .|.|++...--+..
T Consensus 62 l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (146)
T 2fbh_A 62 VGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIAD 108 (146)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHH
T ss_pred hCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHH
Confidence 46888899999999999999997543 2 58888876554443
No 115
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=39.76 E-value=22 Score=24.77 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=20.1
Q ss_pred CchhhhhHHHhCCCCCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAVVKGEILCPRCGLRWPNQVP 226 (293)
Q Consensus 199 ~C~~Ck~iv~~g~~~CP~C~~~W~~~~~ 226 (293)
+|..|-.-.++....||.|+..+.....
T Consensus 40 fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 40 FHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp EETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred ecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 5556665555557799999999887544
No 116
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=39.46 E-value=42 Score=25.31 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEE
Q 022691 6 WKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVV 79 (293)
Q Consensus 6 ~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lV 79 (293)
..+-.+|.+|..+|.++..++...+. .+...+...|. .|..-||= .+..++.|+..+++..
T Consensus 36 ~~~~~iL~~l~~~~~~t~~ela~~l~--------~s~~~vs~~l~----~Le~~glv-~r~~~~~d~R~~~~~l 96 (142)
T 2fbi_A 36 EQQWRVIRILRQQGEMESYQLANQAC--------ILRPSMTGVLA----RLERDGIV-RRWKAPKDQRRVYVNL 96 (142)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTT--------CCHHHHHHHHH----HHHHTTSE-EEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--------CCHhHHHHHHH----HHHHCCCE-EeecCCCCCCeeEEEE
Confidence 34444555555555555555443321 23344444443 34444664 4445556665555443
No 117
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=39.32 E-value=87 Score=22.20 Aligned_cols=24 Identities=4% Similarity=0.087 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP 174 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~ 174 (293)
+++.+-+-..|++|++.||+.+..
T Consensus 45 ~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 45 DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 678889999999999999998743
No 118
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=39.12 E-value=87 Score=23.43 Aligned_cols=37 Identities=3% Similarity=-0.037 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCL 186 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~Rall 186 (293)
-+++++-+-..|++|++.||+.+..+ + .|.|++...-
T Consensus 55 l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~ 97 (142)
T 3bdd_A 55 LQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQARE 97 (142)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHH
Confidence 36788889999999999999987532 2 5778776543
No 119
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=39.02 E-value=69 Score=23.13 Aligned_cols=54 Identities=11% Similarity=0.179 Sum_probs=39.0
Q ss_pred CchhhHHHHHHHHh-C-CCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccC
Q 022691 4 LNWKHHALVQALMT-R-GPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60 (293)
Q Consensus 4 ~~~~HR~fLQalms-r-g~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~ 60 (293)
++.....+|.+|+. . .+++-+++.. .+-+.++......++.+|..+.++|...+
T Consensus 23 Lt~~E~~lL~~L~~~~g~~vsr~~L~~---~vw~~~~~~~~~~l~~~I~rLRkkL~~~~ 78 (96)
T 3rjp_A 23 LTKREYDLLNILMTNMNRVMTREELLS---NVWKYDEAVETNVVDVYIRYLRGKIDIPG 78 (96)
T ss_dssp CCHHHHHHHHHHHHTTTSCBCHHHHHH---HHSSSCSSCCTHHHHHHHHHHHHHHCCTT
T ss_pred cCHHHHHHHHHHHhCCCeeEcHHHHHH---HHcCCCCCCCcchHHHHHHHHHHHhcccC
Confidence 56678899999997 3 4788776653 23333333456889999999999998763
No 120
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=38.89 E-value=1.1e+02 Score=22.37 Aligned_cols=36 Identities=31% Similarity=0.350 Sum_probs=26.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHH
Q 022691 89 LGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126 (293)
Q Consensus 89 lAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl 126 (293)
|++.+++.+++-++.+...+=. +.+|.|+..+....
T Consensus 1 m~~~l~~~~~~~l~~~F~~~D~--~~~G~i~~~e~~~~ 36 (147)
T 4ds7_A 1 MSQNLTEEQIAEFKEAFALFDK--DNSGSISASELATV 36 (147)
T ss_dssp ---CCCHHHHHHHHHHHHHHCT--TCSSEEEHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHCC--CCCCCcCHHHHHHH
Confidence 5788999999999999887644 45788998886554
No 121
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=38.77 E-value=79 Score=24.58 Aligned_cols=42 Identities=7% Similarity=0.096 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~y 191 (293)
-+++++-+-.+|++|++.||+.+..+ + .+.|++...--+..+
T Consensus 74 l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 121 (159)
T 3s2w_A 74 LKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDM 121 (159)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHH
Confidence 46888999999999999999997542 2 678888766544443
No 122
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=38.74 E-value=89 Score=24.12 Aligned_cols=42 Identities=12% Similarity=0.020 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccC---Cc---cEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTP---DG---KIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~---~G---~y~Lg~RallEL~~y 191 (293)
.+++++-+-.+|++|++.||+.+.. ++ .|.|++...--+..+
T Consensus 68 l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 115 (154)
T 2eth_A 68 LSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEI 115 (154)
T ss_dssp TTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHH
Confidence 3678888999999999999998743 22 577888765544443
No 123
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=38.64 E-value=22 Score=28.45 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc-----cEEeccchh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG-----KIGLGVRSC 185 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G-----~y~Lg~Ral 185 (293)
+.++..+.+.++..|+..|||..+.+. .+.|++++-
T Consensus 63 k~~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt~~g~ 103 (134)
T 3aaf_A 63 KDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGR 103 (134)
T ss_dssp TTSCHHHHHHHHHHHHHTTSEEEEECSSTTCEEEEECHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCceeecCcCccCceEEECHHHH
Confidence 678999999999999999999975433 278888875
No 124
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=38.62 E-value=30 Score=26.14 Aligned_cols=44 Identities=14% Similarity=0.045 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC---Cc----cEEeccchhhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP---DG----KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~---~G----~y~Lg~RallEL~~yL~~ 194 (293)
+++....=.+|++|.++||+.... +| .|.|++...-.|..|...
T Consensus 37 ~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~ 87 (108)
T 3l7w_A 37 SIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKE 87 (108)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHH
Confidence 577888889999999999998642 34 589999998888887653
No 125
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=38.18 E-value=77 Score=26.24 Aligned_cols=59 Identities=15% Similarity=-0.054 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCccc
Q 022691 92 KYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLC 171 (293)
Q Consensus 92 ~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL~ 171 (293)
.+|+.|.+.+..+++.+-.. ....|..+.-.. -+++..-+...|+.|.+.||+.
T Consensus 2 ~lt~~q~~il~~I~~~~~~~---g~~~s~~eia~~-----------------------lgl~~~tv~~~l~~Le~~G~i~ 55 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKN---GYPPSVREIARR-----------------------FRITPRGALLHLIALEKKGYIE 55 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---SSCCCHHHHHHH-----------------------HTSCHHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHHHHHHHHHHh---CCCCCHHHHHHH-----------------------cCCCcHHHHHHHHHHHHCCCEE
Confidence 47888888888888877663 123443333211 2566666788999999999999
Q ss_pred ccCCc
Q 022691 172 CTPDG 176 (293)
Q Consensus 172 ~s~~G 176 (293)
+...+
T Consensus 56 ~~~~~ 60 (196)
T 3k2z_A 56 RKNGK 60 (196)
T ss_dssp CC---
T ss_pred ecCCC
Confidence 85443
No 126
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=38.18 E-value=1.3e+02 Score=23.01 Aligned_cols=93 Identities=10% Similarity=0.036 Sum_probs=53.1
Q ss_pred chhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccC-
Q 022691 5 NWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVA- 83 (293)
Q Consensus 5 ~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~s- 83 (293)
+..+..+|.+|..+|.++..++...+. .+...+...|.. |..-+|= .+..++.++..+++.+.-..
T Consensus 43 t~~~~~iL~~l~~~~~~t~~ela~~l~--------is~~tvs~~l~~----Le~~Gli-~r~~~~~d~R~~~~~lT~~G~ 109 (154)
T 2eth_A 43 KTTELYAFLYVALFGPKKMKEIAEFLS--------TTKSNVTNVVDS----LEKRGLV-VREMDPVDRRTYRVVLTEKGK 109 (154)
T ss_dssp BHHHHHHHHHHHHHCCBCHHHHHHHTT--------SCHHHHHHHHHH----HHHTTSE-EEEECTTTSSCEEEEECHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--------CCHHHHHHHHHH----HHHCCCE-EeeCCCCCcceeEEEECHHHH
Confidence 445666777777777777777765442 233444444444 3444664 44456666666655433211
Q ss_pred -----------chhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 84 -----------DEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 84 -----------De~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
.-..++...++++|++-|..+|+.|..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~ 147 (154)
T 2eth_A 110 EIFGEILSNFESLLKSVLEKFSEEDFKVVSEGFNRMVE 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 112234556777777777777777765
No 127
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=38.12 E-value=24 Score=27.64 Aligned_cols=24 Identities=4% Similarity=0.104 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHHCCccccc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCT 173 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s 173 (293)
.+++.......|++|++.||+.+.
T Consensus 61 l~~s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 61 MTVSAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SSSCHHHHHHHHHHHHHTTSSEEC
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 478899999999999999999874
No 128
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.03 E-value=22 Score=24.58 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=20.0
Q ss_pred CchhhhhHHHhCCCCCCCCCCCCCCCCCCc
Q 022691 199 FCEVCNEAVVKGEILCPRCGLRWPNQVPKA 228 (293)
Q Consensus 199 ~C~~Ck~iv~~g~~~CP~C~~~W~~~~~~~ 228 (293)
+|..|-.-.+.....||.|+..+....+..
T Consensus 38 fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 38 FCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp ECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred HHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 444555444444789999999987665543
No 129
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=37.66 E-value=31 Score=25.06 Aligned_cols=41 Identities=7% Similarity=-0.010 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccC---CccEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTP---DGKIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~---~G~y~Lg~RallEL~~ 190 (293)
.+++++-+-.+|++|++.||+.+.. ...|.|++.+.--+..
T Consensus 36 l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~ 79 (99)
T 1tbx_A 36 FPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAIS 79 (99)
T ss_dssp SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHH
Confidence 4678888999999999999998743 3477888776544443
No 130
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=37.54 E-value=35 Score=28.04 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccC--------CccEEeccchhhchHhHHhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTP--------DGKIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~--------~G~y~Lg~RallEL~~yL~~ 194 (293)
-+++....=..|++|.++||+.... .-.|.|++...-+|..|+..
T Consensus 33 ~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~~~~ 85 (179)
T 1yg2_A 33 WKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQ 85 (179)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHS
T ss_pred cCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHHHhC
Confidence 3678888899999999999998532 12699999999999999996
No 131
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=37.37 E-value=1.3e+02 Score=22.58 Aligned_cols=94 Identities=5% Similarity=-0.003 Sum_probs=55.0
Q ss_pred CchhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccC
Q 022691 4 LNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVA 83 (293)
Q Consensus 4 ~~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~s 83 (293)
++..+..+|.+|..+|.++..++...+. .+...+...|..+ ..-||=. +..++.|+..+++...-..
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~--------~s~~~vs~~l~~L----e~~gli~-r~~~~~d~R~~~~~lT~~G 93 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIK--------VDRTTAARAIKRL----EEQGFIY-RQEDASNKKIKRIYATEKG 93 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHT--------CCHHHHHHHHHHH----HHTTSEE-EEECSSCTTCEEEEECHHH
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHC--------CCHhHHHHHHHHH----HHCCCEE-eecCCCCCceeeeEEChhH
Confidence 3445666677777677777666665443 2334445555444 3446644 4556666666555432211
Q ss_pred ------------chhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 84 ------------DEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 84 ------------De~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
.-...+...++++|++-|..+|+.|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 132 (144)
T 1lj9_A 94 KNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRK 132 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 112335667888888888888888876
No 132
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=37.27 E-value=1.3e+02 Score=22.81 Aligned_cols=64 Identities=9% Similarity=-0.055 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccC------------chhhhcCCCCCHHHHHHHHHHHHHHH
Q 022691 42 QGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVA------------DEQSKLGTKYTVQQIAFFKGILEAIA 109 (293)
Q Consensus 42 ~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~s------------De~tklAT~yt~~EI~ffK~lLe~I~ 109 (293)
...+...|.. |..-||=. +..++.|+..+++...-.. .-...+...++++|++-|..+|+.|.
T Consensus 65 ~~tvs~~l~~----Le~~glv~-r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~ 139 (155)
T 1s3j_A 65 PSAVTLMADR----LEQKNLIA-RTHNTKDRRVIDLSLTDEGDIKFEEVLAGRKAIMARYLSFLTEEEMLQAAHITAKLA 139 (155)
T ss_dssp HHHHHHHHHH----HHHTTSEE-EEECSSCTTSEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHCCCEe-ecCCCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3444444443 44446644 4455666666554432211 11223456777778777777777776
Q ss_pred h
Q 022691 110 Q 110 (293)
Q Consensus 110 ~ 110 (293)
.
T Consensus 140 ~ 140 (155)
T 1s3j_A 140 Q 140 (155)
T ss_dssp H
T ss_pred H
Confidence 6
No 133
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=37.24 E-value=37 Score=25.35 Aligned_cols=34 Identities=18% Similarity=0.043 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCC------ccEEeccch
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRS 184 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~Ra 184 (293)
+++.+-.-..|++|.+.||+.+..+ -.|.|++..
T Consensus 39 ~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G 78 (107)
T 2hzt_A 39 NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYG 78 (107)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTG
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccH
Confidence 6888889999999999999987543 379999976
No 134
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=37.09 E-value=1.4e+02 Score=22.84 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=44.9
Q ss_pred chhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccCc
Q 022691 5 NWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVAD 84 (293)
Q Consensus 5 ~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~sD 84 (293)
+..+-.+|.+|..+|.++..++...+. .+...+...| ++|..-||=.+ ..++.|+..+++...-..-
T Consensus 40 t~~q~~iL~~l~~~~~~~~~eLa~~l~--------~~~~~vs~~l----~~L~~~Glv~r-~~~~~D~R~~~~~LT~~G~ 106 (149)
T 4hbl_A 40 TYSQYLVMLTLWEENPQTLNSIGRHLD--------LSSNTLTPML----KRLEQSGWVKR-ERQQSDKRQLIITLTDNGQ 106 (149)
T ss_dssp CHHHHHHHHHHHHSSSEEHHHHHHHHT--------CCHHHHHHHH----HHHHHHTSEEC----------CEEEECSHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC--------CCHHHHHHHH----HHHHHCCCEee-CCCCCCcceeeeeECHHHH
Confidence 334444555555555555554444332 1233333333 34455566444 4455666665554332211
Q ss_pred hh--------hh-cCCCCCHHHHHHHHHHHHHHHh
Q 022691 85 EQ--------SK-LGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 85 e~--------tk-lAT~yt~~EI~ffK~lLe~I~~ 110 (293)
.. .+ +...++++|++-|..+|+.|..
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 141 (149)
T 4hbl_A 107 QQQEAVFEAISSCLPQEFDTTEYDETKYVFEELEQ 141 (149)
T ss_dssp HHHHHHHHHHHTTSCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 11 11 5568999999999999998876
No 135
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=36.93 E-value=34 Score=26.27 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHCCccccc----CCc----cEEeccchhhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCT----PDG----KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s----~~G----~y~Lg~RallEL~~yL~~ 194 (293)
+++....=.+|++|.++||+... .+| +|.|++...-.|..|+..
T Consensus 44 ~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 95 (116)
T 3f8b_A 44 ELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFES 95 (116)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHHH
Confidence 56778888999999999999864 233 699999998888888764
No 136
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=36.74 E-value=93 Score=23.24 Aligned_cols=23 Identities=4% Similarity=-0.109 Sum_probs=13.0
Q ss_pred cccccCcEEEEeeecCCCeEEEEE
Q 022691 55 ELSSCQFELRACRDQYVGQVCYGV 78 (293)
Q Consensus 55 ~L~~l~~eIr~~~~q~~g~~~y~l 78 (293)
+|..-|| |.+..++.|+..+++.
T Consensus 71 ~L~~~gl-i~r~~~~~d~R~~~~~ 93 (138)
T 1jgs_A 71 RLVCKGW-VERLPNPNDKRGVLVK 93 (138)
T ss_dssp HHHHTTS-EEEEECTTCSSCEEEE
T ss_pred HHHHCCC-EEecCCcccCceeEeE
Confidence 3444466 4455566676666554
No 137
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=36.70 E-value=80 Score=23.93 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLR 189 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~ 189 (293)
.+++++-+-.+|++|++.||+.+..+ + .|.|++...--+.
T Consensus 64 l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 64 LYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp TTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 46888999999999999999987432 2 4778877654443
No 138
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A
Probab=36.16 E-value=9.7 Score=29.38 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHH--CCcccccCCccEEeccchhhchH
Q 022691 152 FTMSQKEKTLDEFVQ--DQWLCCTPDGKIGLGVRSCLDLR 189 (293)
Q Consensus 152 ls~seaE~lL~~Lv~--~gWL~~s~~G~y~Lg~RallEL~ 189 (293)
+++-|.-.+|..--. ..||.+..+|.|++=|+..+|+.
T Consensus 46 ~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~vd 85 (96)
T 2gtj_A 46 FKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEID 85 (96)
T ss_dssp ECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEEC
T ss_pred cCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEEE
Confidence 333344445555543 38999999999999999988874
No 139
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=36.10 E-value=1.1e+02 Score=23.65 Aligned_cols=52 Identities=8% Similarity=-0.038 Sum_probs=26.2
Q ss_pred ccCcEEEEeeecCCCeEEEEEEecc------------CchhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 58 SCQFELRACRDQYVGQVCYGVVNNV------------ADEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 58 ~l~~eIr~~~~q~~g~~~y~lVN~~------------sDe~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
.-||=. +..++.|+..+++.+.-. ..-...+-..++++|++-|..+|+.|..
T Consensus 88 ~~Gli~-r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 151 (160)
T 3boq_A 88 KDGMVV-KAMSADDRRSFSAKLTDAGLTTFKQASEAHNRILAELLRAVSDQDMVEASAALRGILE 151 (160)
T ss_dssp HHTSEE-EC--------CEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HCCCEE-eecCCCCCCeEEEEEChhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 336644 444556666655543321 1112335567888888888888888876
No 140
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=35.97 E-value=1.5e+02 Score=22.86 Aligned_cols=93 Identities=12% Similarity=0.011 Sum_probs=48.4
Q ss_pred chhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEecc--
Q 022691 5 NWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNV-- 82 (293)
Q Consensus 5 ~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~-- 82 (293)
+..+..+|.+|..+|.++..++...+. .+...+...|. .|..-||=.+ ..++.++..+++...-.
T Consensus 51 t~~~~~iL~~l~~~~~~t~~ela~~l~--------is~~tvs~~l~----~Le~~Gli~r-~~~~~d~R~~~~~lT~~G~ 117 (162)
T 3cjn_A 51 STAKMRALAILSAKDGLPIGTLGIFAV--------VEQSTLSRALD----GLQADGLVRR-EVDSDDQRSSRVYLTPAGR 117 (162)
T ss_dssp CHHHHHHHHHHHHSCSEEHHHHHHHHT--------CCHHHHHHHHH----HHHHTTSEEE-EEC--CCSSEEEEECHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC--------CChhHHHHHHH----HHHHCCCEEe-cCCCCCCCeeEEEECHHHH
Confidence 334455555555555555555544332 22334444443 3444566444 44555655555443221
Q ss_pred ----------CchhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 83 ----------ADEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 83 ----------sDe~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
..-..++...++++|++-|..+|+.|..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 155 (162)
T 3cjn_A 118 AVYDRLWPHMRASHDRMFQGITPQERQAFLATLNKMLA 155 (162)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 1112335667888888888888887776
No 141
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=35.79 E-value=94 Score=20.98 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=45.9
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHH
Q 022691 87 SKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQ 166 (293)
Q Consensus 87 tklAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~ 166 (293)
++++..+++.+++-++.+...+=. +.+|.|+..+....... + ..+++..+++.++..+-
T Consensus 2 ~~~~~~l~~~~~~~l~~~F~~~D~--d~~G~i~~~el~~~l~~---------------~---g~~~~~~~~~~~~~~~d- 60 (85)
T 2ktg_A 2 SEQKKVLTAEEQQEYKEAFQLFDK--DNDNKLTAEELGTVMRA---------------L---GANPTKQKISEIVKDYD- 60 (85)
T ss_dssp CCCCCSSSHHHHHHHHHHHHHTCT--TCCSEEEHHHHHHHHHT---------------T---SSCCCHHHHHHHHHHHS-
T ss_pred chhhhhCCHHHHHHHHHHHHHHCC--CCCCcCcHHHHHHHHHH---------------h---CCCCCHHHHHHHHHHhC-
Confidence 467888999999999988875532 45789998887654310 1 13567778888887652
Q ss_pred CCcccccCCccEEe
Q 022691 167 DQWLCCTPDGKIGL 180 (293)
Q Consensus 167 ~gWL~~s~~G~y~L 180 (293)
...+|.+++
T Consensus 61 -----~~~~g~i~~ 69 (85)
T 2ktg_A 61 -----KDNSGKFDQ 69 (85)
T ss_dssp -----SSSCSEEEH
T ss_pred -----CCCCCcCcH
Confidence 234666654
No 142
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=35.74 E-value=69 Score=24.86 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=56.3
Q ss_pred CCCchhhHHHHHHHHh-CCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEe
Q 022691 2 PSLNWKHHALVQALMT-RGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVN 80 (293)
Q Consensus 2 ~~~~~~HR~fLQalms-rg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN 80 (293)
..++..+..+|.+|.. .|.++..++...+..-.+ ..... |..+=.+|..-||=.|.- +|..+++++-
T Consensus 5 ~~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~----~~~~T----vt~~l~rLe~kGlv~r~~----~~r~~~~~~~ 72 (138)
T 2g9w_A 5 TRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRD----LAYTT----VMAVLQRLAKKNLVLQIR----DDRAHRYAPV 72 (138)
T ss_dssp GGCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCC----CCHHH----HHHHHHHHHHTTSEEEEC-------CCEEEES
T ss_pred ccCCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCC----CCHHH----HHHHHHHHHHCCCEEEEe----cCCeEEEEeC
Confidence 5678889999999998 599998888776542111 12233 333334556667755532 2444333332
Q ss_pred ccCch----------------------hhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 81 NVADE----------------------QSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 81 ~~sDe----------------------~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
++... ...+-..++++|++-|+.+|+.|..
T Consensus 73 lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~eE~~~L~~lL~~~~~ 124 (138)
T 2g9w_A 73 HGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELEA 124 (138)
T ss_dssp SCHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 22211 1222336788888888888888876
No 143
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=35.74 E-value=69 Score=24.61 Aligned_cols=94 Identities=10% Similarity=0.097 Sum_probs=49.8
Q ss_pred CchhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEE-eeecCCCeEEEEEEecc
Q 022691 4 LNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRA-CRDQYVGQVCYGVVNNV 82 (293)
Q Consensus 4 ~~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~-~~~q~~g~~~y~lVN~~ 82 (293)
++..+..+|.+| ..|.++..++...+. .+...+...|. +|..-||=.+. ..++.|+..+++...-.
T Consensus 36 lt~~q~~iL~~l-~~~~~t~~eLa~~l~--------~~~~~vs~~l~----~Le~~Glv~r~~~~~~~D~R~~~~~lT~~ 102 (151)
T 3kp7_A 36 ISAEQSHVLNML-SIEALTVGQITEKQG--------VNKAAVSRRVK----KLLNAELVKLEKPDSNTDQRLKIIKLSNK 102 (151)
T ss_dssp CCHHHHHHHHHH-HHSCBCHHHHHHHHC--------SCSSHHHHHHH----HHHHTTSEEC-----------CCBEECHH
T ss_pred CCHHHHHHHHHH-HcCCcCHHHHHHHHC--------CCHHHHHHHHH----HHHHCCCEEeeCCCCCCCCCeeEEEECHh
Confidence 344566666666 667777666655432 12233444444 34455776553 44667776666553321
Q ss_pred ------------CchhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 83 ------------ADEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 83 ------------sDe~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
..-..++-..++++|++-|..+++.|..
T Consensus 103 G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 142 (151)
T 3kp7_A 103 GKKYIKERKAIMSHIASDMTSDFDSKEIEKVRQVLEIIDY 142 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 1122345667899999999999988876
No 144
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=35.70 E-value=1.4e+02 Score=22.65 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC-----Cc-cEEeccchhhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP-----DG-KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~-----~G-~y~Lg~RallEL~~yL~~ 194 (293)
+++.+-+-..|++|++.||+.+.. .| .|.+.+...-|+.+++..
T Consensus 53 ~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~~ 102 (123)
T 3r0a_A 53 KLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQK 102 (123)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHHH
Confidence 578899999999999999998742 23 355666667777777664
No 145
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=35.61 E-value=1.4e+02 Score=22.40 Aligned_cols=90 Identities=10% Similarity=0.180 Sum_probs=47.0
Q ss_pred hhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccC---
Q 022691 7 KHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVA--- 83 (293)
Q Consensus 7 ~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~s--- 83 (293)
.+..+|.+|..+|.++..++...+. .+...+...|... ..-||=.+ ..++.|+..+|+...-..
T Consensus 38 ~~~~iL~~l~~~~~~~~~ela~~l~--------~~~~tvs~~l~~L----~~~gli~r-~~~~~d~R~~~~~lT~~G~~~ 104 (142)
T 2bv6_A 38 PQFLVLTILWDESPVNVKKVVTELA--------LDTGTVSPLLKRM----EQVDLIKR-ERSEVDQREVFIHLTDKSETI 104 (142)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHTT--------CCTTTHHHHHHHH----HHTTSEEE-EECSSSTTCEEEEECHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHC--------CChhhHHHHHHHH----HHCCCEEe-ecCCCCcceEEEEEChHHHHH
Confidence 3444555555555555555444332 1233344444443 33476544 445556666555433211
Q ss_pred --------chhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 84 --------DEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 84 --------De~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
....... .++++|++-|..+++.|..
T Consensus 105 ~~~~~~~~~~~~~~~-~l~~~e~~~l~~~l~~~~~ 138 (142)
T 2bv6_A 105 RPELSNASDKVASAS-SLSQDEVKELNRLLGKVIH 138 (142)
T ss_dssp HHHHTTHHHHHHHHT-TCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 1111122 7888888888888888875
No 146
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=34.87 E-value=27 Score=26.42 Aligned_cols=28 Identities=14% Similarity=0.400 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCcc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDGK 177 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~ 177 (293)
++++.+-.-.+|++|++.||+.+.++|+
T Consensus 63 ~~~s~sTVt~~L~rLe~KGlV~R~~~gR 90 (99)
T 2k4b_A 63 LEWSLATVKTLLGRLVKKEMLSTEKEGR 90 (99)
T ss_dssp GCCCHHHHHHHHHHHHHTTSCEEEEETT
T ss_pred cCCCHhhHHHHHHHHHHCCCEEEEeCCC
Confidence 3577888899999999999999877663
No 147
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=34.87 E-value=94 Score=23.87 Aligned_cols=42 Identities=10% Similarity=0.030 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC------ccEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~RallEL~~y 191 (293)
-++++.-+-.+|++|++.||+.+..+ -.|.|++...--+..+
T Consensus 67 l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 114 (155)
T 3cdh_A 67 SLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESL 114 (155)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHH
Confidence 46888899999999999999997542 2588988775544443
No 148
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=34.85 E-value=78 Score=23.08 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=38.7
Q ss_pred CCchhhHHHHHHHHh-CC-CCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccC
Q 022691 3 SLNWKHHALVQALMT-RG-PLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60 (293)
Q Consensus 3 ~~~~~HR~fLQalms-rg-~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~ 60 (293)
+++.....+|.+|+. .| +++-+++.. .+-+.++......++.+|..+.++|...+
T Consensus 28 ~Lt~~e~~lL~~L~~~~g~~vsr~~L~~---~vw~~~~~~~~~~l~~~I~rLRkkL~~~~ 84 (102)
T 3zq7_A 28 HLTPIEFRLLAVLLNNAGKVLTQRQLLN---QVWGPNAVEHSHYLRIYMGHLRQKLEQDP 84 (102)
T ss_dssp CCCHHHHHHHHHHHHTTTCEEEHHHHHH---HHTSSSCSTTHHHHHHHHHHHHHHHCSST
T ss_pred EcCHHHHHHHHHHHHCCCeeECHHHHHH---HhcCCCCCCccchHHHHHHHHHHHhhcCC
Confidence 356677889999997 33 788666543 23333333456789999999999998754
No 149
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=34.52 E-value=1.1e+02 Score=23.58 Aligned_cols=91 Identities=7% Similarity=0.053 Sum_probs=41.2
Q ss_pred hhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccC---
Q 022691 7 KHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVA--- 83 (293)
Q Consensus 7 ~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~s--- 83 (293)
.+..+|.+|..+|.++..++...+. .+...+...|.. |..-||=.+ ..++.|+..+++...-..
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l~--------is~~tvs~~l~~----Le~~glv~r-~~~~~d~R~~~~~lT~~G~~~ 116 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRTA--------MDKVAVSRAVAR----LLERGFIRR-ETHGDDRRRSMLALSPAGRQV 116 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHT--------CCHHHHHHHHHH----HHHTTSEEC----------CCCEECHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHC--------CCHHHHHHHHHH----HHHCCCEee-ecCCCCCCeeEEEECHHHHHH
Confidence 3444455555555555555444332 223344444444 334466444 344555555444332211
Q ss_pred ---------chhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 84 ---------DEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 84 ---------De~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
.-...+...++++|++-|..+|+.|..
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 152 (162)
T 2fa5_A 117 YETVAPLVNEMEQRLMSVFSAEEQQTLERLIDRLAK 152 (162)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 111225567788888888888877766
No 150
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=34.49 E-value=26 Score=28.04 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHCCcccc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCC 172 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~ 172 (293)
-+++..+...+|++|++.|+|..
T Consensus 61 ~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 61 MSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp SSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HCcCHHHHHHHHHHHHHCCCEEE
Confidence 57889999999999999999997
No 151
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=33.70 E-value=1.1e+02 Score=25.59 Aligned_cols=44 Identities=7% Similarity=-0.030 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc------cEEeccchhhchHhHHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG------KIGLGVRSCLDLRGWFR 193 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G------~y~Lg~RallEL~~yL~ 193 (293)
-+++++-+-.+|++|++.||+.+..+. .+.|++...--+..+..
T Consensus 72 l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (207)
T 2fxa_A 72 GVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLE 121 (207)
T ss_dssp TTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHH
Confidence 467888999999999999999986542 78899887665555443
No 152
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=33.64 E-value=98 Score=22.79 Aligned_cols=61 Identities=10% Similarity=0.103 Sum_probs=42.0
Q ss_pred CCchhhHHHHHHHHh--CCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCc--EEEEe
Q 022691 3 SLNWKHHALVQALMT--RGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQF--ELRAC 66 (293)
Q Consensus 3 ~~~~~HR~fLQalms--rg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~--eIr~~ 66 (293)
.++.....+|.+|+. ..+++-+++.. .+-+.++......++.+|..+.++|...+. .|+.+
T Consensus 31 ~Lt~~E~~lL~~L~~~~g~vvsr~~L~~---~vW~~~~~~~~~~l~~~I~rLRkkL~~~~~~~~I~tv 95 (106)
T 1gxq_A 31 EMGPTEFKLLHFFMTHPERVYSREQLLN---HVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTV 95 (106)
T ss_dssp CCCHHHHHHHHHHHHSCSSEECHHHHHH---HHTCSSSCCCTHHHHHHHHHHHHHHGGGTGGGGEEEE
T ss_pred EcCHHHHHHHHHHHHCCCeeEcHHHHHH---HHcCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEE
Confidence 356678899999997 45788666643 232322224568899999999999987643 35544
No 153
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=33.47 E-value=79 Score=24.65 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSC 185 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~Ral 185 (293)
.+++++-+-.+|++|++.||+.+..+ + .+.|++...
T Consensus 61 l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~ 102 (147)
T 4b8x_A 61 LMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGR 102 (147)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHH
T ss_pred HCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHH
Confidence 46888899999999999999997543 2 578888764
No 154
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=33.31 E-value=28 Score=26.32 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCC------ccEEeccchh
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRSC 185 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~Ral 185 (293)
+++..-.-..|++|++.||+.+..+ -.|.|++...
T Consensus 47 ~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~ 87 (112)
T 1z7u_A 47 GITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGY 87 (112)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHH
Confidence 6888999999999999999987543 2689998754
No 155
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=33.23 E-value=44 Score=25.44 Aligned_cols=42 Identities=14% Similarity=0.027 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC---C---ccEEeccchhhchHhHH
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP---D---GKIGLGVRSCLDLRGWF 192 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~---~---G~y~Lg~RallEL~~yL 192 (293)
+++++-+-.+|++|++.||+.+.. + -.|.|++...--+....
T Consensus 62 ~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 62 NVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 578888899999999999998754 2 37889988776665554
No 156
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=33.20 E-value=42 Score=25.91 Aligned_cols=44 Identities=9% Similarity=0.071 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC----Cc----cEEeccchhhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP----DG----KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~----~G----~y~Lg~RallEL~~yL~~ 194 (293)
+++....=.+|.+|.++||+.... .| +|.|++...-.|..|+..
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~ 92 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKK 92 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHH
Confidence 567778888999999999998642 23 699999999999988874
No 157
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=33.19 E-value=36 Score=26.29 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC----Cc----cEEeccchhhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP----DG----KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~----~G----~y~Lg~RallEL~~yL~~ 194 (293)
+++....=.+|.+|.++||+.... .| +|.|++...-.|..|+..
T Consensus 43 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~~ 94 (116)
T 3hhh_A 43 EIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQR 94 (116)
T ss_dssp SCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHH
Confidence 567788888999999999998542 23 699999999999888874
No 158
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=33.11 E-value=1.4e+02 Score=23.23 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~ 190 (293)
-+++++-+-.+|++|++.||+.+..+ + .+.|++...--+..
T Consensus 70 l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 116 (162)
T 3k0l_A 70 SFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQ 116 (162)
T ss_dssp HTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHH
Confidence 46778888899999999999997532 2 58888876544443
No 159
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=33.01 E-value=1e+02 Score=23.28 Aligned_cols=54 Identities=7% Similarity=0.126 Sum_probs=39.1
Q ss_pred CCchhhHHHHHHHHh--CCCCCHHHHH-HHHHHhhCCCCCCchhhHHHHHHHHHhcccccC
Q 022691 3 SLNWKHHALVQALMT--RGPLKEKDFH-AIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60 (293)
Q Consensus 3 ~~~~~HR~fLQalms--rg~l~e~e~~-~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~ 60 (293)
.++.....+|.+|+. ..+++-+++. .++ +.+.......++.+|..+.++|...+
T Consensus 36 ~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW----~~~~~~~~~~l~~~I~rLRkkL~~~~ 92 (120)
T 2z9m_A 36 ELTHREFELFHYLSKHMGQVMTREHLLQTVW----GYDYFGDVRTVDVTIRRLREKIEDDP 92 (120)
T ss_dssp CCCHHHHHHHHHHHTTTTCCEEHHHHHHHHH----CTTCCSCTHHHHHHHHHHHHHHCSST
T ss_pred eCCHHHHHHHHHHHHCCCceEcHHHHHHHHh----CCCCCCCcchHHHHHHHHHHHhhcCC
Confidence 356678899999997 4577866654 444 32223456789999999999998654
No 160
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=32.59 E-value=37 Score=26.18 Aligned_cols=55 Identities=9% Similarity=0.001 Sum_probs=28.2
Q ss_pred cccccCcEEEEeeecCCCeEEEEEEecc------------CchhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 55 ELSSCQFELRACRDQYVGQVCYGVVNNV------------ADEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 55 ~L~~l~~eIr~~~~q~~g~~~y~lVN~~------------sDe~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
+|..-|| |.+..++.|+..+++...-. ..-..++-..++++|++-|..+|+.|..
T Consensus 80 ~L~~~Gl-v~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~l~~ 146 (148)
T 3jw4_A 80 GLEKKGY-IERRIPENNARQKNIYVLPKGAALVEEFNNIFLEVEESITKGLTKDEQKQLMSILIKVNR 146 (148)
T ss_dssp HHHHTTS-BCCC--------CCCCBCHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCC-EEeeCCCCCchhheeeECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4444566 34445666666555542211 1112335668899999999999988875
No 161
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=32.47 E-value=13 Score=28.93 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLD 187 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallE 187 (293)
.++++-|.-++++.--...||.+..+|.|++=|+..++
T Consensus 58 LpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~ 95 (102)
T 1ri9_A 58 LQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLA 95 (102)
T ss_dssp CCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSC
T ss_pred CCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhc
Confidence 34555555555555556999999999999999999887
No 162
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=32.28 E-value=80 Score=24.85 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~y 191 (293)
.+++++-+-.+|++|++.||+.+..+ + .+.|++...--+..+
T Consensus 72 l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 119 (168)
T 3u2r_A 72 LISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDL 119 (168)
T ss_dssp C---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHH
Confidence 45777888899999999999997543 2 678888765444443
No 163
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=32.11 E-value=22 Score=25.97 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=17.2
Q ss_pred CchhhhhHHHhCCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAVVKGEILCPRCGLRWPN 223 (293)
Q Consensus 199 ~C~~Ck~iv~~g~~~CP~C~~~W~~ 223 (293)
+|..|-.--++....||.|...|+.
T Consensus 65 Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 65 FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 4444544445557799999998874
No 164
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=31.75 E-value=82 Score=23.36 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=38.5
Q ss_pred CCchhhHHHHHHHHhC--CCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccC
Q 022691 3 SLNWKHHALVQALMTR--GPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60 (293)
Q Consensus 3 ~~~~~HR~fLQalmsr--g~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~ 60 (293)
.++.....+|.+|+.+ .+++-+++... +-+.++......++.+|..+.++|...+
T Consensus 31 ~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~---vW~~~~~~~~~~l~~~I~rLRkkL~~~~ 87 (110)
T 1opc_A 31 PLTSGEFAVLKALVSHPREPLSRDKLMNL---ARGREYSAMERSIDVQISRLRRMVEEDP 87 (110)
T ss_dssp CCCHHHHHHHHHHHHSTTCCEEHHHHHHH---HCCSSSCTTSSCHHHHHHHHHHHHCSCT
T ss_pred EcCHHHHHHHHHHHHcCCceEcHHHHHHH---HcCCCCCCCcchHHHHHHHHHHHhhcCC
Confidence 3566788899999973 47887766532 3232222345789999999999998754
No 165
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=31.33 E-value=49 Score=25.19 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHhHH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRGWF 192 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~yL 192 (293)
-+++++-+-.+|++|++.||+.+..+ + .|.|++...--+..+.
T Consensus 60 l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (147)
T 2hr3_A 60 ERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR 108 (147)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH
T ss_pred hCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH
Confidence 46888899999999999999987532 2 4889888765554433
No 166
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=31.21 E-value=1.6e+02 Score=21.89 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC------ccEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~RallEL~~ 190 (293)
-+++++-+-.+|++|++.||+.+..+ -.+.|++...--+..
T Consensus 57 l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~ 103 (139)
T 3eco_A 57 LQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEA 103 (139)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHH
T ss_pred hCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHH
Confidence 46788899999999999999997532 257788766544443
No 167
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=30.83 E-value=25 Score=22.57 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=15.9
Q ss_pred CchhhhhHHHhCCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAVVKGEILCPRCGLRWPN 223 (293)
Q Consensus 199 ~C~~Ck~iv~~g~~~CP~C~~~W~~ 223 (293)
+|..|-.-.++....||.|+...++
T Consensus 31 fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 31 LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4444554444445789999987654
No 168
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=30.80 E-value=2.6 Score=30.65 Aligned_cols=28 Identities=29% Similarity=0.705 Sum_probs=22.4
Q ss_pred CCCCchhhhhHHH----hCCCCCCCCCCCCCC
Q 022691 196 DVPFCEVCNEAVV----KGEILCPRCGLRWPN 223 (293)
Q Consensus 196 ~i~~C~~Ck~iv~----~g~~~CP~C~~~W~~ 223 (293)
+|..|-.|+.-.. .|...||.|+..||-
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCceecC
Confidence 6888999998643 346689999999993
No 169
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=30.76 E-value=25 Score=23.17 Aligned_cols=26 Identities=27% Similarity=0.719 Sum_probs=18.4
Q ss_pred CchhhhhHHHhCCCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAVVKGEILCPRCGLRWPNQ 224 (293)
Q Consensus 199 ~C~~Ck~iv~~g~~~CP~C~~~W~~~ 224 (293)
+|..|-.-.+.....||.|+..+...
T Consensus 32 fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 32 FCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp EEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred hhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 55666655555577999999987753
No 170
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=30.68 E-value=25 Score=26.39 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCCcc----EEeccch
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPDGK----IGLGVRS 184 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~G~----y~Lg~Ra 184 (293)
+++++-+-.+|++|++.||+.+..+|. +.|+++.
T Consensus 39 ~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g 76 (123)
T 1okr_A 39 DWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEES 76 (123)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHH
T ss_pred CCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHH
Confidence 478888899999999999999865442 4577664
No 171
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.39 E-value=25 Score=23.55 Aligned_cols=26 Identities=27% Similarity=0.677 Sum_probs=17.6
Q ss_pred CCchhhhhHHHhCCCCCCCCCCCCCC
Q 022691 198 PFCEVCNEAVVKGEILCPRCGLRWPN 223 (293)
Q Consensus 198 ~~C~~Ck~iv~~g~~~CP~C~~~W~~ 223 (293)
.+|..|-.-.+.....||.|+..+..
T Consensus 43 ~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 43 VFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp EEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred hhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 35555655555557799999987753
No 172
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=30.17 E-value=26 Score=30.04 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC----Cc----cEEeccchhhchHhHHhcC
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP----DG----KIGLGVRSCLDLRGWFRNL 195 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~----~G----~y~Lg~RallEL~~yL~~~ 195 (293)
+++....=..|.+|.++||+.... .| .|.|++...-+|..|+.+.
T Consensus 68 ~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~~~ 120 (204)
T 3l9f_A 68 DGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQSD 120 (204)
T ss_dssp ECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHHSC
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHhcc
Confidence 355666677999999999997431 22 6999999999999999963
No 173
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=30.10 E-value=57 Score=32.39 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHH-----CCcccccCCccEEeccchhhch
Q 022691 151 NFTMSQKEKTLDEFVQ-----DQWLCCTPDGKIGLGVRSCLDL 188 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~-----~gWL~~s~~G~y~Lg~RallEL 188 (293)
+++..++...|.+|++ .|++... .|.|.|++...-.+
T Consensus 455 ~~s~~~~~~~L~~L~~~~~~~~glie~~-g~~y~L~~~~~~~~ 496 (583)
T 3lmm_A 455 QSGKEAARNALEAARQTTVAGAPLIIAH-DGVWLLGNACREIL 496 (583)
T ss_dssp TSCHHHHHHHHHHHHTCEETTEESEEEE-TTEEEECHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhhhccccceEEEe-CCEEEECHHHHHHh
Confidence 5789999999999999 7899984 48999999754444
No 174
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=30.07 E-value=26 Score=23.71 Aligned_cols=26 Identities=27% Similarity=0.719 Sum_probs=17.6
Q ss_pred CchhhhhHHHhCCCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAVVKGEILCPRCGLRWPNQ 224 (293)
Q Consensus 199 ~C~~Ck~iv~~g~~~CP~C~~~W~~~ 224 (293)
+|..|-.-.+.....||.|+..+...
T Consensus 39 fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 39 FCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp EEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred HhHHHHHHHHHcCCCCCCCCCccChh
Confidence 45555554444577999999988743
No 175
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=30.00 E-value=1.6e+02 Score=21.54 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=28.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHH
Q 022691 89 LGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126 (293)
Q Consensus 89 lAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl 126 (293)
|+..+++.+++-++.+...+=. +.+|.|+..+....
T Consensus 1 m~~~l~~~~~~~l~~~F~~~D~--d~~G~i~~~el~~~ 36 (153)
T 3ox6_A 1 MDRSLRPEEIEELREAFREFDK--DKDGYINCRDLGNC 36 (153)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHH--HCSSSCCHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhCC--CCCCcCcHHHHHHH
Confidence 5788999999999999987644 35789998887654
No 176
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=29.58 E-value=29 Score=26.64 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=33.5
Q ss_pred CCH-HHHHHHHHHHHHCCcccccC---Cc----cEEeccchhhchHhHHhc
Q 022691 152 FTM-SQKEKTLDEFVQDQWLCCTP---DG----KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 152 ls~-seaE~lL~~Lv~~gWL~~s~---~G----~y~Lg~RallEL~~yL~~ 194 (293)
++. ...=..|++|.++||+.... +| .|.|++...-.|..|+..
T Consensus 46 is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~ 96 (118)
T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRS 96 (118)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHH
Confidence 444 55667999999999997642 33 799999999888888764
No 177
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=29.46 E-value=1.3e+02 Score=22.50 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP 174 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~ 174 (293)
+.+..-+-+.|..|.++||+....
T Consensus 54 gVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 54 GITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 567778888999999999999765
No 178
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=29.41 E-value=42 Score=25.67 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCc------cEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDG------KIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G------~y~Lg~RallEL~~ 190 (293)
-+++++-+-.+|++|++.||+.+..+. .|.|++.+.--+..
T Consensus 60 l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 106 (144)
T 3f3x_A 60 YFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLE 106 (144)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHH
Confidence 467888999999999999999975432 58888876544443
No 179
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=29.19 E-value=11 Score=26.49 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=14.9
Q ss_pred CCchhhhhHHHhCCCCCCCCCC
Q 022691 198 PFCEVCNEAVVKGEILCPRCGL 219 (293)
Q Consensus 198 ~~C~~Ck~iv~~g~~~CP~C~~ 219 (293)
+-|..|+-+.+.. .||+|+.
T Consensus 2 rAC~~C~~v~~~~--~CpnC~~ 21 (59)
T 3lpe_B 2 RACLKCKYLTNDE--ICPICHS 21 (59)
T ss_dssp EEETTTCBEESSS--BCTTTCC
T ss_pred cccccCCcccCCC--CCCCCCC
Confidence 4588898886544 7999975
No 180
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=29.16 E-value=1.8e+02 Score=21.73 Aligned_cols=56 Identities=7% Similarity=0.083 Sum_probs=32.2
Q ss_pred hcccccCcEEEEeeecCCCeEEEEEEecc------------CchhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 54 KELSSCQFELRACRDQYVGQVCYGVVNNV------------ADEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 54 ~~L~~l~~eIr~~~~q~~g~~~y~lVN~~------------sDe~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
..|..-||=. +..++.|+..+++...-. .+-...+...++++|++.|..+++.|..
T Consensus 72 ~~Le~~glv~-r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~~~~ 139 (146)
T 2gxg_A 72 DKLEEMGLVV-RVRDREDRRKILIEITEKGLETFNKGIEIYKKLANEVTGDLSEDEVILVLDKISKILK 139 (146)
T ss_dssp HHHHHTTSEE-EEECSSCTTCEEEEECHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEE-eecCCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4445557644 445555665555443221 1112235567888888888888887765
No 181
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.91 E-value=3.1 Score=30.16 Aligned_cols=28 Identities=29% Similarity=0.695 Sum_probs=22.0
Q ss_pred CCCCchhhhhHHH----hCCCCCCCCCCCCCC
Q 022691 196 DVPFCEVCNEAVV----KGEILCPRCGLRWPN 223 (293)
Q Consensus 196 ~i~~C~~Ck~iv~----~g~~~CP~C~~~W~~ 223 (293)
+|..|-.|+.-.. .|...||.|+..||-
T Consensus 7 eiL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (69)
T 2pk7_A 7 DILACPICKGPLKLSADKTELISKGAGLAYPI 38 (69)
T ss_dssp GTCCCTTTCCCCEECTTSSEEEETTTTEEEEE
T ss_pred hheeCCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 6778999997643 246689999999983
No 182
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=28.73 E-value=45 Score=25.61 Aligned_cols=44 Identities=5% Similarity=-0.071 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHCCccccc--C---Cc----cEEeccchhhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCT--P---DG----KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s--~---~G----~y~Lg~RallEL~~yL~~ 194 (293)
+++....=.+|.+|.++||+... . .| .|.|++...-.|..|+..
T Consensus 53 ~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 105 (115)
T 2dql_A 53 RLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARL 105 (115)
T ss_dssp ECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 46777778899999999999753 1 13 699999999998888763
No 183
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=28.66 E-value=61 Score=24.72 Aligned_cols=42 Identities=10% Similarity=0.007 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC------ccEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~RallEL~~y 191 (293)
-+++++-+-.+|++|++.||+.+..+ -.|.|++...--+..+
T Consensus 60 l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 107 (140)
T 3hsr_A 60 VFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPL 107 (140)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHH
T ss_pred HCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHH
Confidence 46788899999999999999997542 2688988776554443
No 184
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=28.64 E-value=1.8e+02 Score=21.57 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=33.4
Q ss_pred hcccccCcEEEEeeecCCCeEEEEEEeccC------------chhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 54 KELSSCQFELRACRDQYVGQVCYGVVNNVA------------DEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 54 ~~L~~l~~eIr~~~~q~~g~~~y~lVN~~s------------De~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
++|..-||= .+..++.|+..+++...-.. .-...+...++++|++-|..+|+.|..
T Consensus 72 ~~Le~~Gli-~r~~~~~d~R~~~i~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 139 (141)
T 3bro_A 72 QRMEIKKLL-YRKVSGKDSRQKCLKLTKKANKLETIILSYMDSDQSQMTSGLNKEEVVFLEKILKRMIE 139 (141)
T ss_dssp HHHHHTTSE-EEEECSSCTTSEEEEECHHHHTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCE-EeeCCCcCCCeeeeEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 344455764 44556666666555432211 112235667888888888888888775
No 185
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=28.45 E-value=41 Score=26.36 Aligned_cols=44 Identities=7% Similarity=-0.141 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC---C----ccEEeccchhhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP---D----GKIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~---~----G~y~Lg~RallEL~~yL~~ 194 (293)
+++....=.+|.+|.++||+.... + -+|.|++...-.|..|+..
T Consensus 49 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~~ 99 (123)
T 3ri2_A 49 PIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQ 99 (123)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHHH
Confidence 467777788999999999998642 2 2799999999999888764
No 186
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.09 E-value=2.8 Score=30.27 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=22.1
Q ss_pred CCCCchhhhhHHH----hCCCCCCCCCCCCCC
Q 022691 196 DVPFCEVCNEAVV----KGEILCPRCGLRWPN 223 (293)
Q Consensus 196 ~i~~C~~Ck~iv~----~g~~~CP~C~~~W~~ 223 (293)
+|..|-.|+.-.. .|...||.|+..||-
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAYPI 38 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 6788999997643 346689999999983
No 187
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=28.05 E-value=34 Score=26.88 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCC------ccEEeccch
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRS 184 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~Ra 184 (293)
+++..-.-..|++|++.||+.+..+ -.|.|++..
T Consensus 60 gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G 99 (131)
T 1yyv_A 60 GVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLG 99 (131)
T ss_dssp TCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHH
T ss_pred cCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccH
Confidence 5788888999999999999987543 279999974
No 188
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=28.00 E-value=68 Score=23.83 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=44.9
Q ss_pred CCchhhHHHHHHHHhCC--CCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecC-CCeEEEEEE
Q 022691 3 SLNWKHHALVQALMTRG--PLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQY-VGQVCYGVV 79 (293)
Q Consensus 3 ~~~~~HR~fLQalmsrg--~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~-~g~~~y~lV 79 (293)
.++..+..+|++|-..| -++..++.+-+. ... ..|+.|=.+|..-+| |+++++.. +++++|.+.
T Consensus 17 ~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~--------l~~----~tvt~iLk~LE~kgl-Ikr~~~~~~~~rKvy~Ly 83 (91)
T 2dk5_A 17 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSN--------LPL----TEINKILKNLESKKL-IKAVKSVAASKKKVYMLY 83 (91)
T ss_dssp CSCSSHHHHHHHHHHHCTTCEEHHHHHHHTT--------CCH----HHHHHHHHHHHHTTS-EEEECCSSCSSCCEEEES
T ss_pred CCCHHHHHHHHHHHHcCCCCcCHHHHHHHHC--------CCH----HHHHHHHHHHHHCCC-EEEecCCCCCCcEEEEEe
Confidence 45667889999998744 577677665433 122 234444445566666 44444444 889999999
Q ss_pred eccCch
Q 022691 80 NNVADE 85 (293)
Q Consensus 80 N~~sDe 85 (293)
++.+++
T Consensus 84 ~l~Ps~ 89 (91)
T 2dk5_A 84 NLSGPS 89 (91)
T ss_dssp SSCCCC
T ss_pred ccCcCC
Confidence 988775
No 189
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=27.88 E-value=2.1e+02 Score=22.37 Aligned_cols=56 Identities=9% Similarity=0.043 Sum_probs=31.8
Q ss_pred hcccccCcEEEEeeecCCCeEEEEEEeccC------------chhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 54 KELSSCQFELRACRDQYVGQVCYGVVNNVA------------DEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 54 ~~L~~l~~eIr~~~~q~~g~~~y~lVN~~s------------De~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
+.|..-||=.+ ..++.|+..+++.+.-.. .-..++...++++|++-|..+|+.|..
T Consensus 81 ~~Le~~GlV~r-~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~ 148 (168)
T 2nyx_A 81 DRLVGAELIDR-LPHPTSRRELLAALTKRGRDVVRQVTEHRRTEIARIVEQMAPAERHGLVRALTAFTE 148 (168)
T ss_dssp HHHHHTTSEEE-EECSSCSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEe-ccCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34455577544 456666666655432211 111234456777777777777777766
No 190
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=27.60 E-value=57 Score=25.01 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC----Cc----cEEeccchhhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP----DG----KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~----~G----~y~Lg~RallEL~~yL~~ 194 (293)
+++....=.+|.+|.++||+.... .| .|.|++...-.|..|+..
T Consensus 39 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~ 90 (115)
T 4esb_A 39 FVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQS 90 (115)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 567778888999999999998532 23 699999999999988774
No 191
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=27.59 E-value=13 Score=27.77 Aligned_cols=22 Identities=32% Similarity=0.702 Sum_probs=17.0
Q ss_pred CCCchhhhhHHHhCCCCCCCCCCC
Q 022691 197 VPFCEVCNEAVVKGEILCPRCGLR 220 (293)
Q Consensus 197 i~~C~~Ck~iv~~g~~~CP~C~~~ 220 (293)
.+-|..|+-|+.. ..||.|+..
T Consensus 23 ~rAC~~C~~v~~~--d~CPnCgs~ 44 (81)
T 3p8b_A 23 EKACRHCHYITSE--DRCPVCGSR 44 (81)
T ss_dssp CEEETTTCBEESS--SSCTTTCCC
T ss_pred HHHHhhCCCccCC--CCCCCCCCC
Confidence 4569999999754 379999764
No 192
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=27.44 E-value=1.4e+02 Score=22.14 Aligned_cols=53 Identities=11% Similarity=0.180 Sum_probs=37.7
Q ss_pred CCchhhHHHHHHHHh--CCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccc
Q 022691 3 SLNWKHHALVQALMT--RGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSS 58 (293)
Q Consensus 3 ~~~~~HR~fLQalms--rg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~ 58 (293)
.++.....+|.+|+. ..+++-+++... +-+.++......++.+|..+.++|.+
T Consensus 34 ~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~---vW~~~~~~~~~~l~~~I~rLRkkL~~ 88 (110)
T 2pmu_A 34 SLSPTEFTLLRYFVINAGTVLSKPKILDH---VWRYDFGGDVNVVESYVSYLRRKIDT 88 (110)
T ss_dssp CCCHHHHHHHHHHHHTTTSCBCHHHHHHH---HSCTTCCSSSCHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHHCCCEEEcHHHHHHH---HcCCCCCCccchHHHHHHHHHHHhcc
Confidence 356677889999997 348887766532 32322223567899999999999986
No 193
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=27.42 E-value=1.2e+02 Score=23.29 Aligned_cols=59 Identities=7% Similarity=0.064 Sum_probs=41.0
Q ss_pred CchhhHHHHHHHHh--CCCCCHHHHH-HHHHHhhCCCCCCchhhHHHHHHHHHhcccccC---cEEEEe
Q 022691 4 LNWKHHALVQALMT--RGPLKEKDFH-AIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ---FELRAC 66 (293)
Q Consensus 4 ~~~~HR~fLQalms--rg~l~e~e~~-~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~---~eIr~~ 66 (293)
++..-..+|.+|+. ..+++-+++. .++. .++......++.+|..+.++|...+ ..|+.+
T Consensus 44 Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~----~~~~~~~~tl~~~I~rLRkkL~~~~~~~~~I~tv 108 (121)
T 2hwv_A 44 LTHREFELLYYLAKHIGQVMTREHLLQTVWG----YDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTR 108 (121)
T ss_dssp CCHHHHHHHHHHHHTTTCCBCHHHHHHHHTC----GGGTTCHHHHHHHHHHHHHHHCSSTTSCSSEEEE
T ss_pred CCHHHHHHHHHHHHcCCeEEcHHHHHHHHcC----CCCCCCccHHHHHHHHHHHHHhhcCCCCCeEEEe
Confidence 55667889999997 3488877765 3443 1112356889999999999998754 235544
No 194
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=27.19 E-value=3.2e+02 Score=23.97 Aligned_cols=107 Identities=14% Similarity=0.237 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHhhCCC-CCCchhhHHHHHHHHHhccccc--CcEEEEeeecCCCeEEEEEEeccCchhhhcCCCCC
Q 022691 18 RGPLKEKDFHAIFSGLTGKS-PGAHQGLFNEYLLNINKELSSC--QFELRACRDQYVGQVCYGVVNNVADEQSKLGTKYT 94 (293)
Q Consensus 18 rg~l~e~e~~~l~~~~~~~~-p~~~~~~l~~~I~~IN~~L~~l--~~eIr~~~~q~~g~~~y~lVN~~sDe~tklAT~yt 94 (293)
-|+|+..++...+.+..+.. ...+.+++..-|.. |.+| +|+|+.+. |.. ||=.++.+ ++
T Consensus 92 GGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~----L~~LG~g~~v~~~~----g~~---~VqSvp~e-------l~ 153 (234)
T 3cuq_A 92 GGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKK----LKALGTGFGIIPVG----GTY---LIQSVPAE-------LN 153 (234)
T ss_dssp SSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHH----HGGGBTTCEEEEET----TEE---EEECSCCC-------CC
T ss_pred CCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHH----HHhcCCCeEEEEEC----CEE---EEEeCCCc-------cc
Confidence 49999999998887766531 12454554444444 4555 79999883 444 33333333 23
Q ss_pred HHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCCccccc
Q 022691 95 VQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQWLCCT 173 (293)
Q Consensus 95 ~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~gWL~~s 173 (293)
.+... +|+ ++. ..|+++..+.... .+.+...|...|..|+.+|=+...
T Consensus 154 ~D~~~----vLe-la~---~~g~vt~~~L~~~-----------------------l~W~~~Ra~~~L~~l~~~GllwvD 201 (234)
T 3cuq_A 154 MDHTV----VLQ-LAE---KNGYVTVSEIKAS-----------------------LKWETERARQVLEHLLKEGLAWLD 201 (234)
T ss_dssp HHHHH----HHH-HHT---TTSEECHHHHHHH-----------------------HTCCHHHHHHHHHHHHHHTSCEEE
T ss_pred hHHHH----HHH-HHH---hcCcCcHHHHHHH-----------------------hCCCHHHHHHHHHHHHhCCCEEEe
Confidence 33332 333 333 3578887765422 367899999999999999977654
No 195
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.65 E-value=52 Score=22.05 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=18.1
Q ss_pred CCchhhhhHHH-hCCCCCCCCCCCCCC
Q 022691 198 PFCEVCNEAVV-KGEILCPRCGLRWPN 223 (293)
Q Consensus 198 ~~C~~Ck~iv~-~g~~~CP~C~~~W~~ 223 (293)
.+|..|-.-.+ .+...||.|+.....
T Consensus 36 ~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 36 RFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred HHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 35666666555 456789999988654
No 196
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=26.61 E-value=1.5e+02 Score=22.24 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=28.2
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHH
Q 022691 87 SKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNI 126 (293)
Q Consensus 87 tklAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl 126 (293)
....+.+++.+++-++.+...+=. +.+|.|+..+....
T Consensus 4 ~~~~~~l~~~~~~~l~~~F~~~D~--d~~G~i~~~el~~~ 41 (153)
T 2ovk_B 4 APRRVKLSQRQMQELKEAFTMIDQ--DRDGFIGMEDLKDM 41 (153)
T ss_dssp ---CTTCCHHHHHHHHHHHHHHCC--STTTCCCHHHHHHH
T ss_pred CcccCCCCHHHHHHHHHHHHHhCC--CCCCeECHHHHHHH
Confidence 456789999999999998887633 45789998886554
No 197
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=26.50 E-value=2.1e+02 Score=21.58 Aligned_cols=55 Identities=4% Similarity=0.045 Sum_probs=31.0
Q ss_pred cccccCcEEEEeeecCCCeEEEEEEeccC------------chhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 55 ELSSCQFELRACRDQYVGQVCYGVVNNVA------------DEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 55 ~L~~l~~eIr~~~~q~~g~~~y~lVN~~s------------De~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
.|..-||= .+..++.|+..+++...-.. .-...+...++++|++-|..+|+.|..
T Consensus 77 ~Le~~Glv-~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 143 (152)
T 3bj6_A 77 EVQRAGLI-ERRTNPEHARSHRYWLTPRGEAIITAIRADEMAKLALFSEGFSSVELTAYHKVQLALTR 143 (152)
T ss_dssp HHHHTTSE-EEECCSSSTTSCEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCe-eecCCcccccceeeEEChhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 34445664 44555556665554432211 112235567888888888888887765
No 198
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.23 E-value=38 Score=23.04 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=17.1
Q ss_pred CchhhhhHHHh---CCCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAVVK---GEILCPRCGLRWPNQ 224 (293)
Q Consensus 199 ~C~~Ck~iv~~---g~~~CP~C~~~W~~~ 224 (293)
+|..|-.-.+. +...||.|+......
T Consensus 42 fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 42 FCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp EEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred hhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 45555555554 356899999987643
No 199
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=26.10 E-value=43 Score=24.82 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHCCccccc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCT 173 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s 173 (293)
-+++.+-+-..|..|.+.||+...
T Consensus 43 lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 43 LNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 468889999999999999999875
No 200
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=26.06 E-value=5.5 Score=32.59 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=30.1
Q ss_pred EEeccchhhchHhHHhcC--CCCCchhhhhHHHhCCCCCCCCCCC
Q 022691 178 IGLGVRSCLDLRGWFRNL--DVPFCEVCNEAVVKGEILCPRCGLR 220 (293)
Q Consensus 178 y~Lg~RallEL~~yL~~~--~i~~C~~Ck~iv~~g~~~CP~C~~~ 220 (293)
|++|| ..-++.+-|.+. -+..|..|..+.+--...||.|...
T Consensus 27 ~t~g~-~~~~F~~~l~~grL~~~rC~~CG~~~~PPr~~Cp~C~s~ 70 (145)
T 3irb_A 27 YTVGP-AGEQFFNGLKQNKIIGSKCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp HHSHH-HHHHHHHHHHTTCCEEEECTTTCCEEESCCSEETTTTEE
T ss_pred cCCCc-cHHHHHHHHHcCeEEEEEeCCCCcEEcCchhhCcCCCCC
Confidence 34454 345555666665 4789999999888888899999753
No 201
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=25.85 E-value=12 Score=30.70 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=18.2
Q ss_pred CCCCchhhhhHHHhC--CCCCCCCCCC
Q 022691 196 DVPFCEVCNEAVVKG--EILCPRCGLR 220 (293)
Q Consensus 196 ~i~~C~~Ck~iv~~g--~~~CP~C~~~ 220 (293)
-...|..|..+.-.- ...||.|+.+
T Consensus 131 ~~y~C~~Cg~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp CCEEESSSCCEESSCCGGGBCTTTCCB
T ss_pred EEEECCCCCCcccCCCCCCcCCCCCCc
Confidence 367899999875422 3489999975
No 202
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=25.69 E-value=2.3e+02 Score=21.85 Aligned_cols=94 Identities=11% Similarity=0.088 Sum_probs=53.5
Q ss_pred chhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccC-
Q 022691 5 NWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVA- 83 (293)
Q Consensus 5 ~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~s- 83 (293)
+..+-.+|.+|-.+|.++..++...+. .+...+...|. +|..-||=. +..++.|+..+++..--..
T Consensus 45 t~~q~~iL~~l~~~~~~t~~eLa~~l~--------~~~~tvs~~l~----~Le~~Glv~-r~~~~~DrR~~~l~LT~~G~ 111 (162)
T 3k0l_A 45 SLPQFTALSVLAAKPNLSNAKLAERSF--------IKPQSANKILQ----DLLANGWIE-KAPDPTHGRRILVTVTPSGL 111 (162)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHT--------SCGGGHHHHHH----HHHHTTSEE-EEECCSSSCCEEEEECHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC--------CCHHHHHHHHH----HHHHCcCeE-ecCCCCcCCeeEeEECHhHH
Confidence 344455555555555555555544332 12333444444 345557754 4556677776665533211
Q ss_pred -----------chhhhcCCCCCHHHHHHHHHHHHHHHhc
Q 022691 84 -----------DEQSKLGTKYTVQQIAFFKGILEAIAQD 111 (293)
Q Consensus 84 -----------De~tklAT~yt~~EI~ffK~lLe~I~~~ 111 (293)
.-...+...++++|++-|..+|+.|...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~l~~~ 150 (162)
T 3k0l_A 112 DKLNQCNQVVQQLEAQMLQGVDINLAFLIRNNLELMVKN 150 (162)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 1223355688999999999999988873
No 203
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=25.68 E-value=64 Score=24.40 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC---c---cEEeccchhhchHh
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD---G---KIGLGVRSCLDLRG 190 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~---G---~y~Lg~RallEL~~ 190 (293)
-+++++-+-.+|++|++.||+.+..+ + .|.|++...--+..
T Consensus 60 l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 106 (146)
T 2gxg_A 60 YFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNK 106 (146)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred hCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHH
Confidence 46788899999999999999987432 2 47888876554443
No 204
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.62 E-value=39 Score=23.33 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=15.9
Q ss_pred CchhhhhHHHhCCCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAVVKGEILCPRCGLRWPNQ 224 (293)
Q Consensus 199 ~C~~Ck~iv~~g~~~CP~C~~~W~~~ 224 (293)
+|..|-.-.++....||.|+..+...
T Consensus 48 fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 48 FHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp EETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 33444444444467899999877643
No 205
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=25.55 E-value=2.8e+02 Score=22.79 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=75.6
Q ss_pred HHHHHHH--hCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhccc--ccCcEEEEeeecCCCeEEEEEEec--cC
Q 022691 10 ALVQALM--TRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELS--SCQFELRACRDQYVGQVCYGVVNN--VA 83 (293)
Q Consensus 10 ~fLQalm--srg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~--~l~~eIr~~~~q~~g~~~y~lVN~--~s 83 (293)
..|-|++ +-..++.+++.+++.. ......+.+.|..++.... .-+++|+.+-. . |-|+-. ..
T Consensus 10 ~~iEAlLf~~~~pvs~~~La~~~~~------~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~----g--y~l~t~~~~~ 77 (162)
T 1t6s_A 10 RSLEALIFSSEEPVNLQTLSQITAH------KFTPSELQEAVDELNRDYEATGRTFRIHAIAG----G--YRFLTEPEFA 77 (162)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC------CCCHHHHHHHHHHHHHHHHHHTCSEEEEEETT----E--EEEEECGGGH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCc------CCCHHHHHHHHHHHHHHhhhCCCCEEEEEECC----E--EEEEEcHHHH
Confidence 4555665 3567999988887631 0235668888888888887 67999998832 2 333322 23
Q ss_pred chhhhcCCCCCHHHHHHHHHHHHH--HHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHH
Q 022691 84 DEQSKLGTKYTVQQIAFFKGILEA--IAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTL 161 (293)
Q Consensus 84 De~tklAT~yt~~EI~ffK~lLe~--I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL 161 (293)
+-+.++... +..-.+=+..||- |+. ..+.||..+.-.++ +++ ...++
T Consensus 78 ~~v~~~~~~--~~~~~LS~aaLEtLaiIa---y~qPiTR~eI~~ir-----------------------Gv~---~~~~v 126 (162)
T 1t6s_A 78 DLVRQLLAP--VIQRRLSRSMLEVLAVVA---WHQPVTKGEIQQIR-----------------------GAS---PDYSI 126 (162)
T ss_dssp HHHHHHHSC--HHHHHHHHHHHHHHHHHH---HHCSEEHHHHHHHH-----------------------TCC---CCSHH
T ss_pred HHHHHHhcc--cccCccCHHHHHHHHHHH---HcCCcCHHHHHHHH-----------------------CCC---HHHHH
Confidence 333344321 1222333444332 222 13467766665544 111 23489
Q ss_pred HHHHHCCcccccC----Cc---cEEeccchh
Q 022691 162 DEFVQDQWLCCTP----DG---KIGLGVRSC 185 (293)
Q Consensus 162 ~~Lv~~gWL~~s~----~G---~y~Lg~Ral 185 (293)
+.|++.||..... -| -|+.++.+|
T Consensus 127 ~~L~e~glI~e~g~~~~~GRp~ly~tT~~fL 157 (162)
T 1t6s_A 127 DRLLARGLIEVRGRADSPGRPLQYGTTEVFL 157 (162)
T ss_dssp HHHHHTTSEEEEEECSSTTCCEEEEECHHHH
T ss_pred HHHHHCCCEEEccccCCCCCCeEEEECHHHH
Confidence 9999999998522 35 466666544
No 206
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=25.45 E-value=1.5e+02 Score=23.03 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=32.1
Q ss_pred hcccccCcEEEEeeecCCCeEEEEEEecc------------CchhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 54 KELSSCQFELRACRDQYVGQVCYGVVNNV------------ADEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 54 ~~L~~l~~eIr~~~~q~~g~~~y~lVN~~------------sDe~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
++|..-||=.+ ..++.|+..+++...-. ..-...+...++++|++-|..+|+.|..
T Consensus 89 ~~Le~~Glv~r-~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~l~~ 156 (161)
T 3e6m_A 89 DQLVDEGLAAR-SISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILK 156 (161)
T ss_dssp HHHHHTTSEEE-CC---CCCSCEEEECHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEe-eCCcccCCeeEeeECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 34555577544 45566666555543221 1112335567888888888888888876
No 207
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.00 E-value=53 Score=22.71 Aligned_cols=27 Identities=37% Similarity=0.839 Sum_probs=18.7
Q ss_pred CCCchhhhhHHHh------CCCCCCCCCCCCCC
Q 022691 197 VPFCEVCNEAVVK------GEILCPRCGLRWPN 223 (293)
Q Consensus 197 i~~C~~Ck~iv~~------g~~~CP~C~~~W~~ 223 (293)
-.+|..|-.-.+. +...||.|+..+..
T Consensus 39 H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 39 HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3466667665433 27899999999775
No 208
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=24.84 E-value=80 Score=22.54 Aligned_cols=29 Identities=24% Similarity=0.686 Sum_probs=19.5
Q ss_pred CCchhhhhHHH-hCCCCCCCCCCCCCCCCC
Q 022691 198 PFCEVCNEAVV-KGEILCPRCGLRWPNQVP 226 (293)
Q Consensus 198 ~~C~~Ck~iv~-~g~~~CP~C~~~W~~~~~ 226 (293)
.+|..|-.-.. .+...||.|.........
T Consensus 36 ~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 36 QICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred CcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 36666655443 246789999999876443
No 209
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=24.83 E-value=1.2e+02 Score=23.02 Aligned_cols=55 Identities=5% Similarity=0.098 Sum_probs=38.8
Q ss_pred CCchhhHHHHHHHHh--CCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccC
Q 022691 3 SLNWKHHALVQALMT--RGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQ 60 (293)
Q Consensus 3 ~~~~~HR~fLQalms--rg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~ 60 (293)
.++..-..+|.+|+. ..+++-+++.. .+-+.++......++.+|..+.++|...+
T Consensus 41 ~Lt~~E~~LL~~L~~~~g~vvsre~L~~---~vW~~~~~~~~~tl~~~I~rLRkkL~~~~ 97 (115)
T 2k4j_A 41 DLTRAEYEILSLLISKKGYVFSRESIAI---ESESINPESSNKSIDVIIGRLRSKIEKNP 97 (115)
T ss_dssp CSCHHHHHHHHHHHHHCCCEECHHHHHH---HTCCSSCTTCHHHHHHHHHHHHHHHHHSS
T ss_pred ecCHHHHHHHHHHHHcCCcEEcHHHHHH---HHcCCCCCCchhHHHHHHHHHHHHhhcCC
Confidence 356677889999986 44788766543 23333323457889999999999998654
No 210
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=24.79 E-value=25 Score=28.61 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCCCCCcc
Q 022691 211 EILCPRCGLRWPNQVPKAE 229 (293)
Q Consensus 211 ~~~CP~C~~~W~~~~~~~~ 229 (293)
.+.||.|+.++..+.+...
T Consensus 27 lP~CP~C~seytYeDg~l~ 45 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALL 45 (138)
T ss_dssp SCCCTTTCCCCCEECSSSE
T ss_pred CCCCCCCCCcceEecCCeE
Confidence 6899999999998766544
No 211
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=24.64 E-value=1.7e+02 Score=21.56 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHCCcccc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCC 172 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~ 172 (293)
.+|+....-.+|++|...||+.+
T Consensus 46 ~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 46 SNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEEE
Confidence 36888899999999999999984
No 212
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=24.57 E-value=1.9e+02 Score=21.03 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccC
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTP 174 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~ 174 (293)
-+++++++-.+|-+|.+.|.+...+
T Consensus 39 Lg~sK~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 39 LKINKKKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HCCCHHHHHHHHHHHHHCCCEecCC
Confidence 4789999999999999999998743
No 213
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=24.54 E-value=2.1e+02 Score=20.98 Aligned_cols=58 Identities=5% Similarity=-0.066 Sum_probs=36.6
Q ss_pred CCCCchhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEe
Q 022691 1 MPSLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRAC 66 (293)
Q Consensus 1 ~~~~~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~ 66 (293)
|..++..+..+|.+|...|.++..++...+..- +..+... |..+=+.|..-||=.+..
T Consensus 5 ~~~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~----~~~s~~t----v~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 5 TYEISSAEWEVMNIIWMKKYASANNIIEEIQMQ----KDWSPKT----IRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp CCCCCHHHHHHHHHHHHHSSEEHHHHHHHHHHH----CCCCHHH----HHHHHHHHHHHTSEEEEE
T ss_pred cccCCHHHHHHHHHHHhCCCcCHHHHHHHHhcc----CCCcHhh----HHHHHHHHHHCCCeEEEe
Confidence 456788889999999888899988887665421 1112233 333444555667755543
No 214
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=24.45 E-value=15 Score=24.18 Aligned_cols=31 Identities=26% Similarity=0.775 Sum_probs=22.2
Q ss_pred CCCCchhhhh--HHH---hCCCCCCCCCCCCCCCCC
Q 022691 196 DVPFCEVCNE--AVV---KGEILCPRCGLRWPNQVP 226 (293)
Q Consensus 196 ~i~~C~~Ck~--iv~---~g~~~CP~C~~~W~~~~~ 226 (293)
.+..|..|+. ++. .|...|+.|+..++....
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~i 39 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEENII 39 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCccccccc
Confidence 4567999986 332 247799999999876554
No 215
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=23.87 E-value=52 Score=26.58 Aligned_cols=44 Identities=5% Similarity=-0.059 Sum_probs=32.2
Q ss_pred cCCCCHHHHHHHHHHHHHCCcccccCCccEEeccchhhchHhHH
Q 022691 149 FRNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRSCLDLRGWF 192 (293)
Q Consensus 149 ~~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~RallEL~~yL 192 (293)
.-+++..-.-.+|.+|.++||+.......+-+.+..|.++-.+|
T Consensus 172 ~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~a~~l 215 (216)
T 4ev0_A 172 LAGTSRETVSRVLHALAEEGVVRLGPGTVEVREAALLEEIAFGL 215 (216)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHTTC
T ss_pred HhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHhhcc
Confidence 34677788889999999999999844444456777776665543
No 216
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=23.63 E-value=2.7 Score=30.39 Aligned_cols=28 Identities=29% Similarity=0.755 Sum_probs=21.6
Q ss_pred CCCCchhhhhHHH----hCCCCCCCCCCCCCC
Q 022691 196 DVPFCEVCNEAVV----KGEILCPRCGLRWPN 223 (293)
Q Consensus 196 ~i~~C~~Ck~iv~----~g~~~CP~C~~~W~~ 223 (293)
+|..|-.|+.-.. .|...||.|+..||-
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 7 EILVCPLCKGPLVFDKSKDELICKGDRLAFPI 38 (68)
T ss_dssp EECBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 5678999997643 346689999999983
No 217
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=23.59 E-value=51 Score=26.83 Aligned_cols=44 Identities=11% Similarity=-0.050 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC-----Cc----cEEeccchhhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP-----DG----KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~-----~G----~y~Lg~RallEL~~yL~~ 194 (293)
+++....=.+|++|.++||+.... .| +|.|+....-.|..|+..
T Consensus 75 ~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~ 127 (148)
T 2zfw_A 75 RLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQL 127 (148)
T ss_dssp ECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 456667778999999999997532 13 699999998888888764
No 218
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=23.56 E-value=1.1e+02 Score=20.98 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=46.1
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHH
Q 022691 85 EQSKLGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEF 164 (293)
Q Consensus 85 e~tklAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~L 164 (293)
...+++..+++.++.-++.+...+=. +.+|.|+..+....... ...+++..+++.++..+
T Consensus 6 ~~~~~~~~l~~~~~~~l~~~F~~~D~--d~~G~i~~~el~~~l~~------------------~g~~~~~~~~~~l~~~~ 65 (90)
T 1avs_A 6 QQAEARAFLSEEMIAEFKAAFDMFDA--DGGGDISTKELGTVMRM------------------LGQNPTKEELDAIIEEV 65 (90)
T ss_dssp -CCSHHHHBCHHHHHHHHHHHHHHCT--TCSSEECHHHHHHHHHH------------------TTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC--CCCCcCcHHHHHHHHHH------------------hCCCCCHHHHHHHHHHh
Confidence 34567778999999999988886632 45789998887654311 01256777888887765
Q ss_pred HHCCcccccCCccEEe
Q 022691 165 VQDQWLCCTPDGKIGL 180 (293)
Q Consensus 165 v~~gWL~~s~~G~y~L 180 (293)
- ...+|.+++
T Consensus 66 D------~~~dg~i~~ 75 (90)
T 1avs_A 66 D------EDGSGTIDF 75 (90)
T ss_dssp C------TTCCSSEEH
T ss_pred C------CCCCCeEeH
Confidence 2 234666654
No 219
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=23.47 E-value=41 Score=24.62 Aligned_cols=26 Identities=19% Similarity=0.664 Sum_probs=18.8
Q ss_pred CCchhhhhHHHhCCCCCCCCCCCCCC
Q 022691 198 PFCEVCNEAVVKGEILCPRCGLRWPN 223 (293)
Q Consensus 198 ~~C~~Ck~iv~~g~~~CP~C~~~W~~ 223 (293)
.+|..|-.-.+.....||.|+.....
T Consensus 44 ~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 44 NYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp EEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 35666666666667799999998764
No 220
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=23.41 E-value=11 Score=30.88 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=21.8
Q ss_pred CCCCchhhhhHHHhCCCCCCCCCCC
Q 022691 196 DVPFCEVCNEAVVKGEILCPRCGLR 220 (293)
Q Consensus 196 ~i~~C~~Ck~iv~~g~~~CP~C~~~ 220 (293)
.+..|..|..+.+--...||+|...
T Consensus 46 ~~~rC~~CG~~~fPPr~~Cp~C~s~ 70 (145)
T 2gnr_A 46 IGSKCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp EEEECTTTCCEEESCCSEETTTTEE
T ss_pred EEEEECCCCcEEeCCCCCCCCCCCC
Confidence 5789999999988888899999764
No 221
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=23.14 E-value=58 Score=26.15 Aligned_cols=44 Identities=2% Similarity=-0.031 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC----Cc----cEEeccchhhchHhHHhc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP----DG----KIGLGVRSCLDLRGWFRN 194 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~----~G----~y~Lg~RallEL~~yL~~ 194 (293)
.++..-.=.+|++|.++||+.... +| .|.|++...-.|..|+..
T Consensus 73 ~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 124 (145)
T 1xma_A 73 VIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEE 124 (145)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHHH
Confidence 467778888999999999997642 22 799999998888888763
No 222
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=22.94 E-value=2.3e+02 Score=20.86 Aligned_cols=95 Identities=9% Similarity=0.129 Sum_probs=56.8
Q ss_pred CCchhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEecc
Q 022691 3 SLNWKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNV 82 (293)
Q Consensus 3 ~~~~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~ 82 (293)
.++..+-.+|.+|..+|.++..++...+..-.+. .. ..|..+=.+|..-||=.|.. + |..+.+++-+.
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~----~~----~Tvt~~l~rLe~kGlv~R~~-~---~r~~~~~~~~~ 74 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEV----SD----KTIRTLITRLYKKEIIKRYK-S---ENIYFYSSNIK 74 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCC----CH----HHHHHHHHHHHHTTSEEEEE-E---TTEEEEEECSC
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCC----Ch----hhHHHHHHHHHHCCceEEEe-C---CCeEEEEEecC
Confidence 4678889999999999999988888766521111 12 33444444566667765543 2 44443333222
Q ss_pred Cch--------h-h--------hcC------CCCCHHHHHHHHHHHHHHH
Q 022691 83 ADE--------Q-S--------KLG------TKYTVQQIAFFKGILEAIA 109 (293)
Q Consensus 83 sDe--------~-t--------klA------T~yt~~EI~ffK~lLe~I~ 109 (293)
... + . .+. ..++++|++-|+.+|+.|-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~L~~~~ 124 (126)
T 1sd4_A 75 EDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDIS 124 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhh
Confidence 211 0 0 011 5788888888888888763
No 223
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=22.82 E-value=2.4e+02 Score=20.97 Aligned_cols=53 Identities=9% Similarity=0.136 Sum_probs=37.6
Q ss_pred CCchhhHHHHHHHHh--CCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccc
Q 022691 3 SLNWKHHALVQALMT--RGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSS 58 (293)
Q Consensus 3 ~~~~~HR~fLQalms--rg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~ 58 (293)
+++..-..+|.+|+. ..+++-+++... +-+.++......++.+|..+.++|..
T Consensus 28 ~Lt~~E~~lL~~L~~~~g~vvsre~L~~~---vW~~~~~~~~~~l~~~I~rLRkkL~~ 82 (112)
T 2jzy_A 28 HLTGKEYVLLELLLQRTGEVLPRSLISSL---VWNMNFDSDTNVIDVAVRRLRSKIDD 82 (112)
T ss_dssp CCCHHHHHHHHHHHHTTTSCBCHHHHHHH---HTCCCSSCSTTHHHHHHHHHHTTTTT
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHH---hcCCCCCCCcchHHHHHHHHHHHhcC
Confidence 356677889999996 567887766532 32322223567899999999999974
No 224
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=22.82 E-value=2.2e+02 Score=21.53 Aligned_cols=93 Identities=8% Similarity=-0.037 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEE-eeecCCCeEEEEEEeccC-
Q 022691 6 WKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRA-CRDQYVGQVCYGVVNNVA- 83 (293)
Q Consensus 6 ~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~-~~~q~~g~~~y~lVN~~s- 83 (293)
..+..+|.+|..+|.++..++...+. .+... |..+=++|..-||=.+. ..++.|+..+++...-..
T Consensus 41 ~~~~~iL~~l~~~~~~t~~eLa~~l~--------~~~~t----vs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~ 108 (154)
T 2qww_A 41 IQQLAMINVIYSTPGISVADLTKRLI--------ITGSS----AAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGE 108 (154)
T ss_dssp HHHHHHHHHHHHSTTEEHHHHHHHHT--------CCHHH----HHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--------CCHHH----HHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHH
Confidence 33444555555555555555444332 12233 33333455556775441 455666665554422211
Q ss_pred -------------chhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 84 -------------DEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 84 -------------De~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
.-..++...++++|++-|..+|+.|..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 148 (154)
T 2qww_A 109 DLSKRSTANAFMYKAMMKVFENLTENEIEELIRLNKKVET 148 (154)
T ss_dssp HHHHHHHSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 112334556777777777777777765
No 225
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.40 E-value=42 Score=23.29 Aligned_cols=27 Identities=26% Similarity=0.678 Sum_probs=18.6
Q ss_pred CCchhhhhHHHhC------CCCCCCCCCCCCCC
Q 022691 198 PFCEVCNEAVVKG------EILCPRCGLRWPNQ 224 (293)
Q Consensus 198 ~~C~~Ck~iv~~g------~~~CP~C~~~W~~~ 224 (293)
.+|..|-.-.+.. ...||.|+..+...
T Consensus 40 ~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 40 SFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4666666554433 67999999987753
No 226
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.37 E-value=60 Score=21.64 Aligned_cols=26 Identities=35% Similarity=0.880 Sum_probs=17.8
Q ss_pred CchhhhhHH-HhCCCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAV-VKGEILCPRCGLRWPNQ 224 (293)
Q Consensus 199 ~C~~Ck~iv-~~g~~~CP~C~~~W~~~ 224 (293)
+|..|-.-. ..+...||.|+......
T Consensus 30 fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 30 LCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp EEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred hHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 556666555 34567899999987644
No 227
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=22.34 E-value=45 Score=21.32 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=14.2
Q ss_pred CchhhhhHHHhCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAVVKGEILCPRCGLRWP 222 (293)
Q Consensus 199 ~C~~Ck~iv~~g~~~CP~C~~~W~ 222 (293)
+|..|-.--++....||.|+....
T Consensus 31 f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 31 FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 344454444444678888887653
No 228
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=22.25 E-value=55 Score=24.46 Aligned_cols=35 Identities=26% Similarity=0.161 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHCCcc-ccc---CCccEEeccch
Q 022691 150 RNFTMSQKEKTLDEFVQDQWL-CCT---PDGKIGLGVRS 184 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL-~~s---~~G~y~Lg~Ra 184 (293)
..++..+||.+|..--.+|-| .+. ..|.|+|+.|.
T Consensus 12 g~isr~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~ 50 (109)
T 3tkz_A 12 PNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRR 50 (109)
T ss_dssp TTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEE
T ss_pred cCCCHHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEE
Confidence 468899999999875456765 332 35889999985
No 229
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=22.12 E-value=88 Score=22.00 Aligned_cols=32 Identities=9% Similarity=0.185 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHCCcccccCCccEEeccc
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVR 183 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~R 183 (293)
+++..++...|.+|..+|=|.+ +..+|.|-|-
T Consensus 29 ~w~Le~ar~aLeqLf~~G~LRK-RsSRYrlkph 60 (68)
T 3i71_A 29 GWPLEKARNALEQLFSAGTLRK-RSSRYRLKPH 60 (68)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEE-ECCEEEECC-
T ss_pred CCcHHHHHHHHHHHHhcchhhh-hccccccCcc
Confidence 5788999999999999999998 8889988774
No 230
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=22.05 E-value=66 Score=23.99 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=31.7
Q ss_pred HHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEE
Q 022691 14 ALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVV 79 (293)
Q Consensus 14 almsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lV 79 (293)
||| |.+|+-.|+.+=|+.=+. ....+...+.+..|=.+|+|... ...|..|+.|-
T Consensus 27 yL~-rkPmTT~dLl~KFK~r~~---~~~~~e~v~~~a~ILKki~p~qk-------~~~g~~y~~Lk 81 (82)
T 1nha_A 27 YLT-RKPMTTKDLLKKFQTKKT---GLSSEQTVNVLAQILKRLNPERK-------MINDKMHFSLK 81 (82)
T ss_dssp HHH-HSCBCHHHHHHHTTSSCC---SSCHHHHHHHHHHHHHHHCCEEE-------EETTEEEEECC
T ss_pred HHH-hCCccHHHHHHHHHHhcc---cCCCHHHHHHHHHHHHHcCHHhh-------ccCCceEEEec
Confidence 445 677776666544432111 12345566777778788888772 23566666653
No 231
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=21.95 E-value=74 Score=25.29 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccC-CccEEeccc----hhhchHhHH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTP-DGKIGLGVR----SCLDLRGWF 192 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~-~G~y~Lg~R----allEL~~yL 192 (293)
.+++..-.+++|..|.+.||+...+ .|.|.|+.- ++.|+-.-+
T Consensus 40 ~~i~~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p~~Itl~dVi~a~ 87 (149)
T 1ylf_A 40 VNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHEITLLDVYHAV 87 (149)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEC---CCEEESSCGGGCBHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCcEEEccCCCceEeCCChhhCcHHHHHHHH
Confidence 3678889999999999999987533 678888652 344444444
No 232
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=21.83 E-value=1.1e+02 Score=24.28 Aligned_cols=42 Identities=12% Similarity=0.065 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCC------ccEEeccchhhchHhH
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPD------GKIGLGVRSCLDLRGW 191 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~------G~y~Lg~RallEL~~y 191 (293)
-+++++-+-.+|++|++.||+.+..+ -.|.|++...--+...
T Consensus 78 l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~ 125 (166)
T 3deu_A 78 IGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEM 125 (166)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHH
T ss_pred HCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHH
Confidence 46788889999999999999998542 2688888776544443
No 233
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=21.69 E-value=3e+02 Score=21.71 Aligned_cols=87 Identities=14% Similarity=0.051 Sum_probs=55.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhccc-CCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHC
Q 022691 89 LGTKYTVQQIAFFKGILEAIAQDVM-AQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQD 167 (293)
Q Consensus 89 lAT~yt~~EI~ffK~lLe~I~~~~~-~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~ 167 (293)
-.|.|=....+|++.+|=.++.... ..+.| .+-|+... +.. .-.++....=-+|.+|.++
T Consensus 7 ~~~~~~~~~~~fl~l~IL~ll~~~p~YGYeI--~~~L~e~~---------~~~--------~~~is~gtlYp~L~rLe~~ 67 (122)
T 1bm9_A 7 SSTGFLVKQRAFLKLYMITMTEQERLYGLKL--LEVLRSEF---------KEI--------GFKPNHTEVYRSLHELLDD 67 (122)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHTTCCBSTTH--HHHHHHHH---------TTT--------TCCCCHHHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHHHHHHHHHccCCchHHHH--HHHHHHhh---------ccC--------cccCCcccHHHHHHHHHHC
Confidence 4677888899999999998887421 12222 22222110 000 1245666677899999999
Q ss_pred CcccccCC----------ccEEeccchhh--chHhHHhc
Q 022691 168 QWLCCTPD----------GKIGLGVRSCL--DLRGWFRN 194 (293)
Q Consensus 168 gWL~~s~~----------G~y~Lg~Rall--EL~~yL~~ 194 (293)
|||..... -+|.|++..-. +++++..+
T Consensus 68 Gll~~~~~~~~g~~r~~rkyY~lT~~G~~~~~~~~~~~~ 106 (122)
T 1bm9_A 68 GILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVE 106 (122)
T ss_dssp TSEEEEEEECTTSTTCEEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCCCceeEEEEChhhhhHHHHHHHHHH
Confidence 99974322 34999998777 77776653
No 234
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*
Probab=21.68 E-value=57 Score=24.23 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHCCcc-ccc---CCccEEeccch
Q 022691 150 RNFTMSQKEKTLDEFVQDQWL-CCT---PDGKIGLGVRS 184 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL-~~s---~~G~y~Lg~Ra 184 (293)
..++..+||.+|.+--.+|-| .+. ..|.|+|+.|.
T Consensus 10 g~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~ 48 (102)
T 2cia_A 10 GNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKA 48 (102)
T ss_dssp CSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEECC
T ss_pred CCCCHHHHHHHHhhCCCCcEEEEEECCCCCCCEEEEEEe
Confidence 468899999999654466755 332 34789999985
No 235
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=21.51 E-value=56 Score=24.98 Aligned_cols=35 Identities=23% Similarity=0.090 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHCCccc-cc---CCccEEeccch
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLC-CT---PDGKIGLGVRS 184 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~-~s---~~G~y~Lg~Ra 184 (293)
..|+..+||.+|..--.+|-|- +. ..|.|+|+.|.
T Consensus 15 G~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~ 53 (119)
T 2ysx_A 15 GNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLY 53 (119)
T ss_dssp ESCCHHHHHHHHHHHCCTTEEEEEECSSCTTSEEEEEEC
T ss_pred CCCCHHHHHHHHhhcCCCCEEEEEeCCCCCCCEEEEEEE
Confidence 4688999999998744666653 32 34789999986
No 236
>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A
Probab=21.49 E-value=38 Score=26.36 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHHCCcc-ccc---CCccEEeccch
Q 022691 150 RNFTMSQKEKTLDEFVQDQWL-CCT---PDGKIGLGVRS 184 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL-~~s---~~G~y~Lg~Ra 184 (293)
..++..+||.+|.. -.+|-| .+. ..|.|+|+.|.
T Consensus 27 G~isR~eAe~lL~~-~~~G~FLVR~S~~~~g~y~LSv~~ 64 (122)
T 2lnw_A 27 GNMERQQTDNLLKS-HASGTYLIRERPAEAERFAISIKF 64 (122)
T ss_dssp CSCCHHHHHHHHHH-SCTTBEEEEECCCSSEEEEEEEEC
T ss_pred cCCCHHHHHHHhcC-CCCCeEEEEeCCCCCCcEEEEEEe
Confidence 46899999999987 456765 332 24899999987
No 237
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=21.34 E-value=71 Score=24.26 Aligned_cols=34 Identities=6% Similarity=0.112 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccCCccEEeccch
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTPDGKIGLGVRS 184 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~~G~y~Lg~Ra 184 (293)
..|..+-.-.-|..|+++||+..+.+| +.|++.+
T Consensus 41 l~~drstvsrnl~~L~r~GlVe~~~~D-l~LT~~G 74 (95)
T 1bja_A 41 PDLGNAVVNSNIGVLIKKGLVEKSGDG-LIITGEA 74 (95)
T ss_dssp TTSCHHHHHHHHHHHHTTTSEEEETTE-EEECHHH
T ss_pred hcccHHHHHHHHHHHHHCCCeecCCCC-eeeCHhH
Confidence 457788888899999999999855666 8887754
No 238
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=21.27 E-value=83 Score=30.25 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEE
Q 022691 6 WKHHALVQALMTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELR 64 (293)
Q Consensus 6 ~~HR~fLQalmsrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr 64 (293)
.++..+|+.|+..+.++.+++...+. .+...+...|..||..| +-++.|.
T Consensus 18 ~R~~~IL~~L~~~~~it~~eLA~~L~--------VS~RTIr~dI~~In~~L-~~~~~I~ 67 (485)
T 3sqn_A 18 LRQIRLLEQLLNVPQLTAKRLAAQIQ--------TTERTVFSDLQYIRSQL-PADWSIE 67 (485)
T ss_dssp HHHHHHHHHHHHCCSCBCGGGHHHHT--------SCHHHHHHHHHHHHTTC-CTTEEEE
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhC--------CCHHHHHHHHHHHHHhc-ccCcEEE
Confidence 45788999999988899888877765 46788999999999999 5677776
No 239
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.20 E-value=2.6e+02 Score=20.75 Aligned_cols=93 Identities=12% Similarity=0.024 Sum_probs=48.9
Q ss_pred chhhHHHHHHH-HhCCCCCHHHHHHHHHHhhCCCCCCchhhHHHHHHHHHhcccccCcEEEEeeecCCCeEEEEEEeccC
Q 022691 5 NWKHHALVQAL-MTRGPLKEKDFHAIFSGLTGKSPGAHQGLFNEYLLNINKELSSCQFELRACRDQYVGQVCYGVVNNVA 83 (293)
Q Consensus 5 ~~~HR~fLQal-msrg~l~e~e~~~l~~~~~~~~p~~~~~~l~~~I~~IN~~L~~l~~eIr~~~~q~~g~~~y~lVN~~s 83 (293)
+..+-.+|.+| ...|.++..++...+. .+...+...| +.|..-||=. +..++.|+..+++...-..
T Consensus 36 ~~~~~~iL~~l~~~~~~~t~~~la~~l~--------~s~~~vs~~l----~~L~~~glv~-r~~~~~d~R~~~~~lT~~G 102 (146)
T 2fbh_A 36 SQARWLVLLHLARHRDSPTQRELAQSVG--------VEGPTLARLL----DGLESQGLVR-RLAVAEDRRAKHIVLTPKA 102 (146)
T ss_dssp TTTHHHHHHHHHHCSSCCBHHHHHHHHT--------CCHHHHHHHH----HHHHHTTSEE-EECCBTTBCSCEEEECTTH
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHhC--------CChhhHHHHH----HHHHHCCCee-ecCCCcccCeeeeEECHhH
Confidence 33444555555 4455566555554332 1233333333 3444556644 4445556555554433211
Q ss_pred ------------chhhhcCCCCCHHHHHHHHHHHHHHHh
Q 022691 84 ------------DEQSKLGTKYTVQQIAFFKGILEAIAQ 110 (293)
Q Consensus 84 ------------De~tklAT~yt~~EI~ffK~lLe~I~~ 110 (293)
.-...+...++++|++-|..+|+.|..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 141 (146)
T 2fbh_A 103 DVLIADIEAIAASVRNDVLTGIDESEQALCQQVLLRILA 141 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 112335667888888888888887765
No 240
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=21.18 E-value=1.1e+02 Score=27.00 Aligned_cols=86 Identities=7% Similarity=-0.010 Sum_probs=54.7
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhhCCCCC---------CchhhH-HHHHHHHHhcccccCcEEEEeeecCCC------
Q 022691 9 HALVQALMTRGPLKEKDFHAIFSGLTGKSPG---------AHQGLF-NEYLLNINKELSSCQFELRACRDQYVG------ 72 (293)
Q Consensus 9 R~fLQalmsrg~l~e~e~~~l~~~~~~~~p~---------~~~~~l-~~~I~~IN~~L~~l~~eIr~~~~q~~g------ 72 (293)
++|-..|+.+|+++..++..+........|. -++..| .-++..-..++..|||... .+..+|
T Consensus 32 ~AL~~lL~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~DP~fk~~Ll~d~~aa~~elG~~g~--~~~ptg~~~p~~ 109 (243)
T 2zzd_C 32 MAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWV--TSPPTQFGTPSD 109 (243)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHCHHHHHHHHHCHHHHHGGGTCCTT--TSSTTSSCCTTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCCHHHHHHHHHChHHHHHHcCCCcc--ccccccccCCCC
Confidence 3778888889999999998877755433332 022333 4567778889999998542 223444
Q ss_pred -eEEEEEEeccCchh---hhcCCCCCHH
Q 022691 73 -QVCYGVVNNVADEQ---SKLGTKYTVQ 96 (293)
Q Consensus 73 -~~~y~lVN~~sDe~---tklAT~yt~~ 96 (293)
+.+.|+=||-.--- --|.+.|.-+
T Consensus 110 ~~~l~vvENTp~vHN~vVCTLCSCYP~p 137 (243)
T 2zzd_C 110 YCNLRVLADSPTLKHVVVCTLASAYPRP 137 (243)
T ss_dssp CSEEEEEECBTTEEEEEECTTSCCCCHH
T ss_pred cceEEEEecCCCceeEEEEecccccCcc
Confidence 88888888743211 1255555443
No 241
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=21.17 E-value=1.9e+02 Score=19.35 Aligned_cols=73 Identities=22% Similarity=0.208 Sum_probs=43.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHhhhhhhccccccccCCCCCcccCCCCHHHHHHHHHHHHHCC
Q 022691 89 LGTKYTVQQIAFFKGILEAIAQDVMAQGSISNIEALNIRLENLVLSTQGSQLLNGPLPAAFRNFTMSQKEKTLDEFVQDQ 168 (293)
Q Consensus 89 lAT~yt~~EI~ffK~lLe~I~~~~~~~g~Iss~~aLnl~~~~q~~~~~~~q~~~s~l~~~~~~ls~seaE~lL~~Lv~~g 168 (293)
++..+++.+++-++.+...+=. +.+|.|+..+...... .+ . +++..+++.++..+=
T Consensus 1 m~~~~~~~~~~~l~~~F~~~D~--d~~G~i~~~el~~~l~---------------~~---g-~~~~~~~~~~~~~~D--- 56 (86)
T 2opo_A 1 MAAEDTPQDIADRERIFKRFDT--NGDGKISSSELGDALK---------------TL---G-SVTPDEVRRMMAEID--- 56 (86)
T ss_dssp -----CHHHHHHHHHHHHHHCT--TCSSEEEHHHHHHHHH---------------TT---T-TCCHHHHHHHHHHHC---
T ss_pred CCccCCHhhHHHHHHHHHHHCC--CCCCCcCHHHHHHHHH---------------Hc---C-CCCHHHHHHHHHHhC---
Confidence 4678899999999888886633 4579999888765531 01 1 467778888877652
Q ss_pred cccccCCccEEeccchhhchHhHHh
Q 022691 169 WLCCTPDGKIGLGVRSCLDLRGWFR 193 (293)
Q Consensus 169 WL~~s~~G~y~Lg~RallEL~~yL~ 193 (293)
...+|.+++ -|+..++.
T Consensus 57 ---~~~dg~i~~-----~eF~~~~~ 73 (86)
T 2opo_A 57 ---TDGDGFISF-----DEFTDFAR 73 (86)
T ss_dssp ---TTCSSEECH-----HHHHHHHH
T ss_pred ---CCCCCcCcH-----HHHHHHHH
Confidence 234566543 24544444
No 242
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.13 E-value=49 Score=22.65 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=16.6
Q ss_pred CchhhhhHHHhCCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAVVKGEILCPRCGLRWPN 223 (293)
Q Consensus 199 ~C~~Ck~iv~~g~~~CP~C~~~W~~ 223 (293)
+|..|-.-.++....||.|+..+..
T Consensus 40 f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 40 FHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp EEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred ecHHHHHHHHHcCCcCCCcCccccc
Confidence 4455555444446799999998764
No 243
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=21.05 E-value=2.7e+02 Score=21.00 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=27.9
Q ss_pred hcccccCcEEEEeeecCCCeEEEEEEecc--------CchhhhcC--CCCCHHHHHHHHHHHHHHHhc
Q 022691 54 KELSSCQFELRACRDQYVGQVCYGVVNNV--------ADEQSKLG--TKYTVQQIAFFKGILEAIAQD 111 (293)
Q Consensus 54 ~~L~~l~~eIr~~~~q~~g~~~y~lVN~~--------sDe~tklA--T~yt~~EI~ffK~lLe~I~~~ 111 (293)
+.|..-||=.+ ..++.|+..+++...-. ......+. ..++++|++-|..+|+.|...
T Consensus 83 ~~Le~~glv~r-~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 149 (153)
T 2pex_A 83 KRLQAAGLVTR-TRAASDERQVIIALTETGRALRSKAGAVPEQVFCASACSLDELRQLKQELEKLRSS 149 (153)
T ss_dssp HHHHHTTSEEE-EC-------CEEEECHHHHHGGGGSTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEee-cCCcccCCeeEeeECHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 44555577444 44555655555432221 11111111 378899999999888888763
No 244
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=21.02 E-value=44 Score=26.22 Aligned_cols=27 Identities=30% Similarity=0.691 Sum_probs=18.7
Q ss_pred CCchhhhhHHHhCCCCCCCCCCCCCCC
Q 022691 198 PFCEVCNEAVVKGEILCPRCGLRWPNQ 224 (293)
Q Consensus 198 ~~C~~Ck~iv~~g~~~CP~C~~~W~~~ 224 (293)
.+|..|-.-.+.....||.|.......
T Consensus 74 ~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 74 SFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp EEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 456666554455577999999988654
No 245
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=20.86 E-value=56 Score=24.30 Aligned_cols=28 Identities=25% Similarity=0.704 Sum_probs=18.6
Q ss_pred CchhhhhHHHhCCCCCCCCCCCCCCCCC
Q 022691 199 FCEVCNEAVVKGEILCPRCGLRWPNQVP 226 (293)
Q Consensus 199 ~C~~Ck~iv~~g~~~CP~C~~~W~~~~~ 226 (293)
+|..|-.-.+.....||.|+.......|
T Consensus 38 fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (108)
T 2ckl_A 38 FCKTCIVRYLETSKYCPICDVQVHKTRP 65 (108)
T ss_dssp EEHHHHHHHHTSCSBCTTTCCBSCSSCG
T ss_pred hhHHHHHHHHHhCCcCcCCCccccccCc
Confidence 4555555444446899999998776543
No 246
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=20.79 E-value=59 Score=24.10 Aligned_cols=35 Identities=20% Similarity=-0.037 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHHHCCcc-ccc---CCccEEeccch
Q 022691 150 RNFTMSQKEKTLDEFVQDQWL-CCT---PDGKIGLGVRS 184 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL-~~s---~~G~y~Lg~Ra 184 (293)
.+++..+||.+|..--.+|-| .+. ..|.|+|+.|.
T Consensus 9 g~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~ 47 (104)
T 1d4t_A 9 GKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLY 47 (104)
T ss_dssp CSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEE
T ss_pred cCCCHHHHHHHHHhcCCCCEEEEeeCCCCCCCEEEEEEE
Confidence 367889999999765355654 332 34788888885
No 247
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=20.73 E-value=1.2e+02 Score=21.73 Aligned_cols=24 Identities=8% Similarity=-0.093 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHCCcccccC
Q 022691 151 NFTMSQKEKTLDEFVQDQWLCCTP 174 (293)
Q Consensus 151 ~ls~seaE~lL~~Lv~~gWL~~s~ 174 (293)
+.+..-+..-|+.|.+.|.+.+.+
T Consensus 27 ~VS~~TIRrdL~~Le~~G~l~R~~ 50 (78)
T 1xn7_A 27 NTPQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CcCHHHHHHHHHHHHHCCCEEEec
Confidence 567778899999999999999863
No 248
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=20.68 E-value=72 Score=27.50 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHCCccccc---CCccEEeccchhhc--hHhHHhcC-CCCCchhhhhHHHhCC
Q 022691 154 MSQKEKTLDEFVQDQWLCCT---PDGKIGLGVRSCLD--LRGWFRNL-DVPFCEVCNEAVVKGE 211 (293)
Q Consensus 154 ~seaE~lL~~Lv~~gWL~~s---~~G~y~Lg~RallE--L~~yL~~~-~i~~C~~Ck~iv~~g~ 211 (293)
..+.+.||.+|.+.|=|..+ -++.++|+.-.++| |..||... -.+.-..+.++|.+|.
T Consensus 70 ~~~~~~LL~kL~~~Gil~~~~~~L~~v~~l~~~~~le~RLD~~L~r~G~a~Sr~~ArqLI~~Gh 133 (197)
T 3u5c_J 70 LFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRH 133 (197)
T ss_dssp HHHHHHHHHHHHHHTSSCGGGCSSHHHHHCCHHHHHTTSHHHHHHHSSTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCCCCCcccChhhhhcccHHHHHHHHHHHHHHHccccCCHHHHHHHHHcCC
Confidence 45788999999999999642 34788899999999 66777754 3456688999999993
No 249
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=20.63 E-value=76 Score=25.09 Aligned_cols=33 Identities=9% Similarity=-0.038 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHCCcccccC-CccEEecc
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLCCTP-DGKIGLGV 182 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~~s~-~G~y~Lg~ 182 (293)
.+++..-.+++|.+|++.||+.-.+ .|-|.|.-
T Consensus 33 ~~i~~~~l~kIl~~L~~aGlv~s~rG~GGy~Lar 66 (145)
T 1xd7_A 33 VNTNPVVVRRMISLLKKADILTSRAGVPGASLKK 66 (145)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEECCSSSSSCEESS
T ss_pred HCcCHHHHHHHHHHHHHCCceEeecCCCCceecC
Confidence 3678889999999999999997533 67788853
No 250
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...
Probab=20.45 E-value=39 Score=26.05 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHCCccc-c---cCCccEEeccch
Q 022691 150 RNFTMSQKEKTLDEFVQDQWLC-C---TPDGKIGLGVRS 184 (293)
Q Consensus 150 ~~ls~seaE~lL~~Lv~~gWL~-~---s~~G~y~Lg~Ra 184 (293)
.+++..+||.+|..--.+|-|- + +..|.|+|+.|.
T Consensus 11 G~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~ 49 (117)
T 3ov1_A 11 GKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKF 49 (117)
T ss_dssp CSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEE
T ss_pred CCCCHHHHHHHHhCCCCCCcEEEEeCCCCCCCEEEEEec
Confidence 4688999999998822367763 3 245899999996
Done!