BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022692
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S04|A Chain A, Solution Nmr Structure Of Protein Pf0455 From Pyrococcus
Furiosus. Northeast Structural Genomics Consortium
Target Pfr13
Length = 110
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMM-LKVQSVCHYDSF 187
+E+E+ +QE F IK + +EGR I PG VI + ++V+++ Y+SF
Sbjct: 1 MEWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSF 60
Query: 188 SEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKG 226
EMLE E L VLPGVK+IEE +QVY+ + + ++ G
Sbjct: 61 REMLEKEGLENVLPGVKSIEEGIQVYRRFYDEEKEKKYG 99
>pdb|2Z0T|A Chain A, Crystal Structure Of Hypothetical Protein Ph0355
pdb|2Z0T|B Chain B, Crystal Structure Of Hypothetical Protein Ph0355
pdb|2Z0T|C Chain C, Crystal Structure Of Hypothetical Protein Ph0355
pdb|2Z0T|D Chain D, Crystal Structure Of Hypothetical Protein Ph0355
Length = 109
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 131 FELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMM-LKVQSVCHYDSFSE 189
+E+ +QE + IK G + +EGR I PG +I+ + +KV+ + Y SF E
Sbjct: 3 WEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSFKE 62
Query: 190 MLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKG 226
MLE E + VLPGVK+IEE ++VY+ + + ++ G
Sbjct: 63 MLEKEGIENVLPGVKSIEEGVKVYRQFYDEEREKKYG 99
>pdb|1PBX|B Chain B, Haemoglobin Of The Antarctic Fish Pagothenia Bernacchii:
Amino Acid Sequence, Oxygen Equilibria And Crystal
Structure Of Its Carbonmonoxy Derivative
pdb|1HBH|B Chain B, Structure Of Deoxyhaemoglobin Of The Antarctic Fish
Pagothenia Bernacchii And Structural Basis Of The Root
Effect
pdb|1HBH|D Chain D, Structure Of Deoxyhaemoglobin Of The Antarctic Fish
Pagothenia Bernacchii And Structural Basis Of The Root
Effect
pdb|1S5X|B Chain B, The Crystal Structure Of Trematomus Bernacchii Hemoglobin
Oxidized By Air
pdb|1S5Y|B Chain B, The Crystal Structure Of Trematomus Bernacchii Hemoglobin
Oxidized By Ferricyanide
pdb|1S5Y|D Chain D, The Crystal Structure Of Trematomus Bernacchii Hemoglobin
Oxidized By Ferricyanide
pdb|2H8D|B Chain B, Crystal Structure Of Deoxy Hemoglobin From Trematomus
Bernacchii At Ph 8.4
pdb|2H8D|D Chain D, Crystal Structure Of Deoxy Hemoglobin From Trematomus
Bernacchii At Ph 8.4
pdb|2H8F|B Chain B, Crystal Structure Of Deoxy Hemoglobin From Trematomus
Bernacchii At Ph 6.2
pdb|2H8F|D Chain D, Crystal Structure Of Deoxy Hemoglobin From Trematomus
Bernacchii At Ph 6.2
pdb|2PEG|B Chain B, Crystal Structure Of Trematomus Bernacchii Hemoglobin In A
Partial Hemichrome State
pdb|3GKV|B Chain B, X-Ray Structure Of An Intermediate Along The Oxidation
Pathway Of Trematomus Bernacchii Hemoglobin
pdb|3GQG|B Chain B, Crystal Structure At Acidic Ph Of The Ferric Form Of The
Root Effect Hemoglobin From Trematomus Bernacchii.
pdb|3GQG|D Chain D, Crystal Structure At Acidic Ph Of The Ferric Form Of The
Root Effect Hemoglobin From Trematomus Bernacchii.
pdb|4G51|B Chain B, Crystallographic Analysis Of The Interaction Of Nitric
Oxide With Hemoglobin From Trematomus Bernacchii In The
T Quaternary Structure (fully Ligated State).
pdb|4G51|D Chain D, Crystallographic Analysis Of The Interaction Of Nitric
Oxide With Hemoglobin From Trematomus Bernacchii In The
T Quaternary Structure (fully Ligated State).
pdb|4IRO|B Chain B, Crystal Structure Of T-state Carbonmonoxy Hemoglobin From
Trematomus Bernacchii At Ph 8.4
pdb|4IRO|D Chain D, Crystal Structure Of T-state Carbonmonoxy Hemoglobin From
Trematomus Bernacchii At Ph 8.4
Length = 146
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 17/70 (24%)
Query: 158 DYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESL----------VKVL----PGV 203
DY+ IGP + L++C+++ + H+ F + AE++ +KVL GV
Sbjct: 19 DYDDIGPKA---LSRCLIVYPWTQRHFSGFGNLYNAEAIIGNANVAAHGIKVLHGLDRGV 75
Query: 204 KTIEEVLQVY 213
K ++ + Y
Sbjct: 76 KNMDNIAATY 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,010,929
Number of Sequences: 62578
Number of extensions: 280353
Number of successful extensions: 824
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 14
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)