Query 022692
Match_columns 293
No_of_seqs 91 out of 108
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:37:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xne_A Hypothetical protein PF 100.0 2E-41 6.9E-46 277.4 10.1 111 129-240 2-112 (113)
2 2z0t_A Putative uncharacterize 100.0 5E-41 1.7E-45 273.8 11.5 106 130-236 2-108 (109)
3 3iuw_A Activating signal coint 99.3 2.6E-12 8.8E-17 100.9 6.8 55 127-184 6-69 (83)
4 1te7_A Hypothetical UPF0267 pr 98.3 7.6E-07 2.6E-11 70.5 5.7 92 132-235 5-102 (103)
5 2kku_A Uncharacterized protein 96.3 0.047 1.6E-06 47.5 11.4 98 133-242 31-145 (161)
6 2dp9_A Hypothetical protein TT 94.9 0.036 1.2E-06 45.0 5.2 94 132-245 10-107 (124)
7 2e5o_A Activating signal coint 62.9 4.2 0.00014 34.2 2.7 30 131-160 8-37 (154)
8 2vb2_X Copper protein, cation 62.4 8.2 0.00028 29.6 4.0 48 124-171 23-71 (88)
9 2qcp_X Cation efflux system pr 59.9 9.9 0.00034 28.6 4.0 48 124-171 15-63 (80)
10 2vl6_A SSO MCM N-TER, minichro 59.2 11 0.00036 33.3 4.7 44 132-176 194-239 (268)
11 1ltl_A DNA replication initiat 55.6 11 0.00038 33.6 4.3 44 132-176 181-226 (279)
12 1dm9_A Hypothetical 15.5 KD pr 54.2 13 0.00043 30.3 4.0 52 141-193 29-87 (133)
13 4hci_A Cupredoxin 1; structura 52.2 5.9 0.0002 29.4 1.7 28 144-171 10-41 (100)
14 1vky_A S-adenosylmethionine:tR 51.2 17 0.00057 34.9 4.9 60 160-221 111-179 (347)
15 4gop_B Putative uncharacterize 48.2 34 0.0012 27.2 5.6 51 143-193 59-123 (136)
16 2k6p_A Uncharacterized protein 47.5 5.5 0.00019 29.6 0.8 55 140-195 20-82 (92)
17 3kdf_D Replication protein A 3 47.0 30 0.001 27.4 5.2 51 143-193 54-118 (132)
18 1p9k_A ORF, hypothetical prote 43.6 8.2 0.00028 28.1 1.2 33 141-173 41-73 (79)
19 4i1k_A B3 domain-containing tr 41.0 38 0.0013 27.9 5.0 38 126-171 75-126 (146)
20 2l55_A SILB,silver efflux prot 38.1 46 0.0016 25.1 4.7 52 133-184 18-74 (82)
21 1wdi_A Hypothetical protein TT 38.0 7.5 0.00026 37.2 0.3 72 149-221 79-177 (345)
22 2pyt_A Ethanolamine utilizatio 37.7 30 0.001 27.4 3.8 38 131-171 69-106 (133)
23 4ham_A LMO2241 protein; struct 36.2 29 0.001 27.2 3.5 20 69-88 14-33 (134)
24 1bxv_A Plastocyanin; copper pr 33.6 27 0.00091 24.7 2.6 16 157-172 18-33 (91)
25 1o5u_A Novel thermotoga mariti 30.4 66 0.0023 24.3 4.5 32 138-171 50-81 (101)
26 2pi2_A Replication protein A 3 29.6 75 0.0026 28.2 5.4 54 137-190 87-155 (270)
27 1t62_A Conserved hypothetical 26.4 1E+02 0.0035 26.5 5.4 125 108-241 7-154 (166)
28 2gim_A Plastocyanin; beta shee 23.7 40 0.0014 24.7 2.1 16 157-172 19-34 (106)
29 3bcw_A Uncharacterized protein 22.0 91 0.0031 24.5 4.0 32 138-171 69-100 (123)
30 2ov0_A Amicyanin; beta-sandwic 22.0 44 0.0015 25.0 2.1 34 139-172 10-47 (105)
31 1id2_A Amicyanin; beta barrel, 21.9 44 0.0015 25.1 2.0 34 139-172 11-48 (106)
32 1y3t_A Hypothetical protein YX 21.5 64 0.0022 28.0 3.3 53 139-195 241-303 (337)
33 1c05_A Ribosomal protein S4 de 21.1 50 0.0017 27.4 2.4 32 141-172 71-102 (159)
34 1qhq_A Protein (auracyanin); e 21.1 46 0.0016 25.9 2.1 27 145-171 14-46 (140)
35 4hik_A Protection of telomeres 20.4 52 0.0018 27.5 2.3 27 146-172 63-93 (143)
36 3es4_A Uncharacterized protein 20.1 61 0.0021 26.0 2.7 30 140-171 64-93 (116)
37 3pt3_A E3 ubiquitin-protein li 20.1 23 0.00078 28.6 0.1 25 63-87 91-115 (118)
No 1
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=100.00 E-value=2e-41 Score=277.44 Aligned_cols=111 Identities=19% Similarity=0.376 Sum_probs=107.9
Q ss_pred cceeeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEceeEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022692 129 VEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNKCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE 208 (293)
Q Consensus 129 v~heM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~k~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiEE 208 (293)
..|+|+|+++||++|++|+||||||+||+||++|++||+|+|++++.++|++|++|+||++||++||+++|+||++|+||
T Consensus 2 ~~h~m~l~~~~F~~I~sG~KtiEiR~nd~~~~~i~vGD~I~f~~~l~~~V~~v~~Y~sF~~ll~~e~~~~v~p~~~s~ee 81 (113)
T 1xne_A 2 KVYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEK 81 (113)
T ss_dssp CEEEECCCHHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEEETTTEEEEEEEEEECSSHHHHHHHSCHHHHCSSCCCHHH
T ss_pred ceEEEecChHHHHHHHcCCcEEEEEecchhhhccCCCCEEEEccceEEEEEEEEecCCHHHHHHhcCHHhcCCCCCCHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHhhcCCeEEEEEeeccCCC
Q 022692 209 VLQVYKFIENSTQRRRKGPMVSLQYAFPKWLL 240 (293)
Q Consensus 209 gv~~yr~iYSkEkE~qyGV~VAIeI~lp~~~~ 240 (293)
|+++||+||++|||++||| |||+|++.+|.+
T Consensus 82 ~~~~~~~~Y~~e~E~~~GV-vaI~i~~~~~~~ 112 (113)
T 1xne_A 82 ALKRFHNMYPKWKEYRYGV-LAIKFRVLGRDK 112 (113)
T ss_dssp HHHHHTTSSSSSCCCCCCC-EEEEEEESSSCC
T ss_pred HHHHHHHhCCHHHHHhcCE-EEEEEEEccccc
Confidence 9999999999999999999 999999988654
No 2
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=100.00 E-value=5e-41 Score=273.79 Aligned_cols=106 Identities=34% Similarity=0.594 Sum_probs=103.8
Q ss_pred ceeeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEce-eEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHH
Q 022692 130 EFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLNK-CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEE 208 (293)
Q Consensus 130 ~heM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~k-~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiEE 208 (293)
.|+|+|+++||++|++|+||||||+||+||++|++||+|+||+ ++.|+|++|++|+||++||++||+++|+||++|+||
T Consensus 2 ~h~m~l~~~~f~~I~~G~KtiEiRlnd~k~~~ikvGD~I~f~~~~l~~~V~~v~~Y~sF~~ll~~e~~~~~~p~~~s~ee 81 (109)
T 2z0t_A 2 KWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSFKEMLEKEGIENVLPGVKSIEE 81 (109)
T ss_dssp EEEECCCHHHHHHHHTTSCCEEEEECCTTGGGCCTTCEEEEGGGTEEEEEEEEEEESCHHHHHHHHCHHHHSTTCCCHHH
T ss_pred eEEEEcChHHHHHHHcCCCEEEEEecchhhhcCCCCCEEEECCCEEEEEEEEEEccCCHHHHHHhcChhhcCCCCCCHHH
Confidence 5999999999999999999999999999999999999999995 899999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHhhcCCeEEEEEeec
Q 022692 209 VLQVYKFIENSTQRRRKGPMVSLQYAFP 236 (293)
Q Consensus 209 gv~~yr~iYSkEkE~qyGV~VAIeI~lp 236 (293)
|+++||+|||+|||++||| |||+|++.
T Consensus 82 ~v~~~~~~Y~~e~E~~~GV-laI~i~~~ 108 (109)
T 2z0t_A 82 GVKVYRQFYDEEREKKYGV-VAIEIEPI 108 (109)
T ss_dssp HHHHHHTTCCHHHHHHHCE-EEEEEEEC
T ss_pred HHHHHHHhCCHHHHHhcCE-EEEEEEEc
Confidence 9999999999999999999 99999974
No 3
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=99.31 E-value=2.6e-12 Score=100.87 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=48.9
Q ss_pred hccceeeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEc---------eeEEEEEEEEeec
Q 022692 127 KAVEFELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN---------KCMMLKVQSVCHY 184 (293)
Q Consensus 127 ~~v~heM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~---------k~L~v~V~~Vr~Y 184 (293)
.+..|+|+|+++||++|++|+||+|+|+||.+ +++||.|+|+ +.+.++|+.|.-|
T Consensus 6 ~~~~H~lki~~~~F~~V~~G~Kt~EiR~nDr~---~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i~d~ 69 (83)
T 3iuw_A 6 HPTIHTLKIETEFFKAVKERRKTFEIRKNDRN---FQVGDILILEEYMNGMYLDDECEAEVIYITDY 69 (83)
T ss_dssp CCCEEEEEEEHHHHHHHHTTSCCEEEEECCSC---CCTTCEEEEEEEETTEEEEEEEEEEEEEEECT
T ss_pred cceEEEEEcCHHHHHHHHcCCcEEEEEecccC---CCCCCEEEEEEccCCCccCcEEEEEEEEEccc
Confidence 46679999999999999999999999999954 9999999986 4788999999544
No 4
>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7
Probab=98.30 E-value=7.6e-07 Score=70.47 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=68.1
Q ss_pred eeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEE--c--e--eEEEEEEEEeecCCHHHHHhccCccccCCCCCC
Q 022692 132 ELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILL--N--K--CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKT 205 (293)
Q Consensus 132 eM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F--~--k--~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~S 205 (293)
.|.+.+++.++|.+|+||+.+|. .+....++||.+.. + + ...++|++|+ +..|.++=++ .+..-|. |
T Consensus 5 ~i~f~~~~~~~Il~G~KT~T~R~--~~e~~~~~Gd~~~v~~~~~~~~~~~i~vt~V~-~~~~~eitee---~A~~EG~-s 77 (103)
T 1te7_A 5 DITFFQRFQDDILAGRKTITIRD--ESESHFKTGDVLRVGRFEDDGYFCTIEVTATS-TVTLDTLTEK---HAEQENM-T 77 (103)
T ss_dssp SCCCCHHHHHHHHTCCCEEEEEC--GGGCCCCTTSEEEEEETTTEEEEEEEEEEEEE-EECSTTTSTH---HHHHTTS-C
T ss_pred EEEEcHHHHHHHHCCCCEEEEeC--CCCCCCCCCCEEEEEECCCCcEEEEEEEEEEE-EEcHHHhCHH---HHHHcCC-C
Confidence 47788999999999999999997 34556899999977 3 2 3556777765 5566666443 2223444 8
Q ss_pred HHHHHHHHHhcCChHHHhhcCCeEEEEEee
Q 022692 206 IEEVLQVYKFIENSTQRRRKGPMVSLQYAF 235 (293)
Q Consensus 206 iEEgv~~yr~iYSkEkE~qyGV~VAIeI~l 235 (293)
+++-.+.+++||+.+.+ | ..|++++
T Consensus 78 l~~~~~~~~~iYp~~~~----v-~vI~F~~ 102 (103)
T 1te7_A 78 LTELKKVIADIYPGQTQ----F-YVIEFKC 102 (103)
T ss_dssp HHHHHHHHHHHCSCCSC----E-EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCC----E-EEEEEEE
Confidence 99999999999985533 7 8888886
No 5
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}
Probab=96.26 E-value=0.047 Score=47.53 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=68.5
Q ss_pred eeccccchHHHh-cCCceEEEeecCccccCCCCCCEEEEce-------eEEEEEEEEeecCCHHHHHhccCccccCCCCC
Q 022692 133 LHVQEPFFSFIK-DGLETVEGRCTISDYNSIGPGSVILLNK-------CMMLKVQSVCHYDSFSEMLEAESLVKVLPGVK 204 (293)
Q Consensus 133 M~L~e~yF~lIk-sGkKTIE~RLnDeKRq~IkvGD~I~F~k-------~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~ 204 (293)
|-+.++|-+.|- +|+|++ +|=++ -+.++++||.|+|+. .=.++|.+|-.|++-.+|.+..+-. .|.+
T Consensus 31 lSIkpey~~rIf~~GkK~f-lrr~~-v~~~l~~Gd~vviYaS~P~~~iVGea~I~~Ii~~~~P~~lWe~~~d~---~gIT 105 (161)
T 2kku_A 31 YPIPKRFMDRFFKKGKDVF-VKPAT-VWKELKPGMKFVFYQSHEDTGFVGEARIKRVVLSENPMQFFETFGDR---VFLT 105 (161)
T ss_dssp ECCSSSTTHHHHHHSCEEE-EESSC-SCTTCCTTEEEEECCCSTTCBCCEEEEEEEEEEESCTHHHHHHTSTT---BSSC
T ss_pred EecCHHHHHHHHhcCceEE-EeccC-cccccCCCCEEEEEEcCCCcEEEEEEEEEEEEecCCHHHHHHHhCcc---cCcC
Confidence 567899999999 999999 76322 566899999999992 2457899999999999999985332 2443
Q ss_pred CHHHHHHHHHhcCChHHHhhcCC---------eEEEEEeeccCCCCC
Q 022692 205 TIEEVLQVYKFIENSTQRRRKGP---------MVSLQYAFPKWLLSP 242 (293)
Q Consensus 205 SiEEgv~~yr~iYSkEkE~qyGV---------~VAIeI~lp~~~~~~ 242 (293)
++. +++||. .++ .||- ++||+|+-+.....|
T Consensus 106 --kee---f~~Yy~-g~~-~w~~~~~~~~~~~~~aI~L~~Vrky~~p 145 (161)
T 2kku_A 106 --KDE---LKEYMK-SQE-RWGRRRESKKKKLWMAIELEDVKKYDKP 145 (161)
T ss_dssp --HHH---HHHHHH-HHH-HTSSCCCCSSCCCEEEEEEEEEEECCSC
T ss_pred --HHH---HHHHhc-ccc-cccccccccccccEEEEEecceEeCCCC
Confidence 333 444443 233 2443 589999855444444
No 6
>2dp9_A Hypothetical protein TTHA0113; jellyroll, structural genomics, NPPSFA, national project on structural and functional analyses; 1.90A {Thermus thermophilus} SCOP: b.122.1.5 PDB: 1wk2_A
Probab=94.85 E-value=0.036 Score=45.05 Aligned_cols=94 Identities=20% Similarity=0.089 Sum_probs=58.4
Q ss_pred eeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEc--ee--EEEEEEEEeecCCHHHHHhccCccccCCCCCCHH
Q 022692 132 ELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN--KC--MMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIE 207 (293)
Q Consensus 132 eM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~--k~--L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiE 207 (293)
-|-+.++|-++|-+|.||+|+|--..++ .|. |... .. =.++|+++..+.|-+++.+. .++. +. + +
T Consensus 10 ~LSIkqpyA~lIl~G~K~~E~R~~~t~~----rg~-v~IhatG~ivG~~~i~d~~g~~~~eel~~~--~~~~--~~-~-~ 78 (124)
T 2dp9_A 10 GLIVREPYASLIVDGRKVWEIRRRKTRH----RGP-LGIVSGGRLIGQADLVGVEGPFSVEELLAH--QEKH--LA-E-E 78 (124)
T ss_dssp EEECCTTHHHHHHTTCCCEEEESSCCCC----CEE-EEEEETTEEEEEEEEEEEEEEECHHHHGGG--HHHH--CC-C-H
T ss_pred EEEEecHHHHHHHCCCceEEeeCCCCCC----CCE-EEEEECCCEEEEEEEEEEecCCCHHHHHHH--hhhc--CC-C-H
Confidence 3668999999999999999999875443 254 5554 33 35577787756666666554 1221 11 1 2
Q ss_pred HHHHHHHhcCChHHHhhcCCeEEEEEeeccCCCCCCCC
Q 022692 208 EVLQVYKFIENSTQRRRKGPMVSLQYAFPKWLLSPMLH 245 (293)
Q Consensus 208 Egv~~yr~iYSkEkE~qyGV~VAIeI~lp~~~~~~m~~ 245 (293)
+.... |...+ .. .|+.++-|..+-.|++.
T Consensus 79 ~~~~~----y~~g~----~~-ya~~l~~~~~l~~Pi~~ 107 (124)
T 2dp9_A 79 AFLRA----YAKDE----PL-YAWVLENAFRYEKPLHV 107 (124)
T ss_dssp HHHHH----HHTTS----CE-EEEEEEEEEEEEEEEEC
T ss_pred HHhhh----hhcCC----ce-EEEEECCcEEcCCCccc
Confidence 21211 11111 25 89999988877777665
No 7
>2e5o_A Activating signal cointegrator 1; TRIP4_C domain, ASC- 1, thyroid receptor-interacting protein 4, TRIP-4, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.87 E-value=4.2 Score=34.20 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=25.5
Q ss_pred eeeeccccchHHHhcCCceEEEeecCcccc
Q 022692 131 FELHVQEPFFSFIKDGLETVEGRCTISDYN 160 (293)
Q Consensus 131 heM~L~e~yF~lIksGkKTIE~RLnDeKRq 160 (293)
.-|-+..||-.+|..|.|+||+|--..+++
T Consensus 8 ~aLSirQPwAslIv~G~K~iE~R~W~T~~R 37 (154)
T 2e5o_A 8 WCLSVHQPWASLLVRGIKRVEGRSWYTPHR 37 (154)
T ss_dssp EEEEECTTHHHHHHHTSCCEEEESSCCCCC
T ss_pred cEEEEeCcHHHHHHcCCceeeccCCcCCCC
Confidence 347789999999999999999998766555
No 8
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=62.37 E-value=8.2 Score=29.61 Aligned_cols=48 Identities=10% Similarity=0.035 Sum_probs=38.9
Q ss_pred hhhhccceeeeccccchHHHhcCCceEEEeecCc-cccCCCCCCEEEEc
Q 022692 124 DILKAVEFELHVQEPFFSFIKDGLETVEGRCTIS-DYNSIGPGSVILLN 171 (293)
Q Consensus 124 ~~l~~v~heM~L~e~yF~lIksGkKTIE~RLnDe-KRq~IkvGD~I~F~ 171 (293)
+.+++..-.+.|.+.+...+.=+.=|...++.++ ....+++||.|.|.
T Consensus 23 ~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~ 71 (88)
T 2vb2_X 23 KGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFN 71 (88)
T ss_dssp EEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEE
T ss_pred EEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEE
Confidence 3444444568888888888888889999999874 68999999999998
No 9
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=59.95 E-value=9.9 Score=28.60 Aligned_cols=48 Identities=10% Similarity=0.044 Sum_probs=39.1
Q ss_pred hhhhccceeeeccccchHHHhcCCceEEEeecC-ccccCCCCCCEEEEc
Q 022692 124 DILKAVEFELHVQEPFFSFIKDGLETVEGRCTI-SDYNSIGPGSVILLN 171 (293)
Q Consensus 124 ~~l~~v~heM~L~e~yF~lIksGkKTIE~RLnD-eKRq~IkvGD~I~F~ 171 (293)
+.+++..-.+.|.+.+...+.=+.-|...++.+ .....+++||.|.|.
T Consensus 15 ~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~ 63 (80)
T 2qcp_X 15 KGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFN 63 (80)
T ss_dssp EEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEE
T ss_pred EEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEE
Confidence 344555556888888888888888999999987 468899999999998
No 10
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=59.22 E-value=11 Score=33.32 Aligned_cols=44 Identities=16% Similarity=0.115 Sum_probs=37.4
Q ss_pred eeeccccchHHHhcCC--ceEEEeecCccccCCCCCCEEEEceeEEE
Q 022692 132 ELHVQEPFFSFIKDGL--ETVEGRCTISDYNSIGPGSVILLNKCMML 176 (293)
Q Consensus 132 eM~L~e~yF~lIksGk--KTIE~RLnDeKRq~IkvGD~I~F~k~L~v 176 (293)
++.||+.+ +.+-.|. .+|++=|.++==.+++|||.|.++..+.+
T Consensus 194 ~ikiQE~p-e~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~ 239 (268)
T 2vl6_A 194 KAVIQERP-EEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDI 239 (268)
T ss_dssp EEEEECCG-GGSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEE
T ss_pred EEEEEeCC-CCCCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEE
Confidence 58888887 6677888 79999999999999999999999865543
No 11
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=55.61 E-value=11 Score=33.63 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=37.7
Q ss_pred eeeccccchHHHhcCC--ceEEEeecCccccCCCCCCEEEEceeEEE
Q 022692 132 ELHVQEPFFSFIKDGL--ETVEGRCTISDYNSIGPGSVILLNKCMML 176 (293)
Q Consensus 132 eM~L~e~yF~lIksGk--KTIE~RLnDeKRq~IkvGD~I~F~k~L~v 176 (293)
++.||+.+ +.+-.|. .+|++=|.++==..++|||.|.++..+.+
T Consensus 181 ~ikiQE~p-e~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~ 226 (279)
T 1ltl_A 181 TLKLQEPL-ENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRT 226 (279)
T ss_dssp EEEEECCS-TTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEE
T ss_pred EEEEecCc-ccCCCCCCCeEEEEEEcccccCccCCCCEEEEEEEEEE
Confidence 58889887 6777888 79999999999999999999999865544
No 12
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=54.25 E-value=13 Score=30.26 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=33.9
Q ss_pred HHHhcCCceEEEeecCccccCCCCCCEEEEc---eeEEEEEEEEeec----CCHHHHHhc
Q 022692 141 SFIKDGLETVEGRCTISDYNSIGPGSVILLN---KCMMLKVQSVCHY----DSFSEMLEA 193 (293)
Q Consensus 141 ~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~---k~L~v~V~~Vr~Y----~SF~eLLe~ 193 (293)
.+|++|.=+|-++.. ..-..|++||.|.+. ....++|.++-.- +..+.||+.
T Consensus 29 ~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~~~~~~~v~~~~~~r~~a~~a~~lYed 87 (133)
T 1dm9_A 29 EMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEE 87 (133)
T ss_dssp HHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEEEEECEEESCCCCHHHHGGGEEE
T ss_pred HHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCCceeeEEEccccccCCCcHHhhhheEE
Confidence 567888755555443 334579999999987 4677788777433 235556665
No 13
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=52.19 E-value=5.9 Score=29.43 Aligned_cols=28 Identities=11% Similarity=-0.048 Sum_probs=20.3
Q ss_pred hcCCceEEEeecC----ccccCCCCCCEEEEc
Q 022692 144 KDGLETVEGRCTI----SDYNSIGPGSVILLN 171 (293)
Q Consensus 144 ksGkKTIE~RLnD----eKRq~IkvGD~I~F~ 171 (293)
.++.++|||.+.| +..-.|++||.|.|.
T Consensus 10 ~a~~~~v~V~~~~~~F~P~~i~v~~G~tV~~~ 41 (100)
T 4hci_A 10 IASAKVIEVELNDDYFNPNVITIPINESTTLL 41 (100)
T ss_dssp ----CCEEEEEETTEEESSEEEECTTSCEEEE
T ss_pred CCCCcEEEEEEECCEEeCCEEEECCCCEEEEE
Confidence 3578999999988 455678999999984
No 14
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase-ISOM; TM0574, struct genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1
Probab=51.16 E-value=17 Score=34.93 Aligned_cols=60 Identities=10% Similarity=0.151 Sum_probs=27.3
Q ss_pred cCCCCCCEEEEceeEEEEEEEEe---------ecCCHHHHHhccCccccCCCCCCHHHHHHHHHhcCChHH
Q 022692 160 NSIGPGSVILLNKCMMLKVQSVC---------HYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQ 221 (293)
Q Consensus 160 q~IkvGD~I~F~k~L~v~V~~Vr---------~Y~SF~eLLe~EgL~kvlPG~~SiEEgv~~yr~iYSkEk 221 (293)
+++|+|+.|.|.+.+.++|++.. .|+. .++|++.|--. +|-+-..+.-.+.|...|.++.
T Consensus 111 kk~k~G~~l~f~~~l~a~v~~~~~~g~r~~~f~~~~-~~~L~~~G~~P-LPPYI~r~~D~erYQTVyAk~~ 179 (347)
T 1vky_A 111 QKVKKGTELVIDEDLSAVCLGRGEDGTRILKFQPQD-DRLIFEKGRTP-LPPYIKNEVPLERYQTVYAKEE 179 (347)
T ss_dssp TTCCTTCEEEEETTEEEEEEEECTTSCEEEEEESCC-HHHHHHHC--------------------------
T ss_pred CCCCCCCEEEeCCCeEEEEEEeeCCCcEEEEEecCC-HHHHHhCCCCC-CCCccCCCCChHHcchhhcCCC
Confidence 68999999999866888888652 2566 78888865443 3443221224466888888643
No 15
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=48.20 E-value=34 Score=27.21 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=40.6
Q ss_pred HhcCCceEEEeecCc-------cccCCCCCCEEEEc-------eeEEEEEEEEeecCCHHHHHhc
Q 022692 143 IKDGLETVEGRCTIS-------DYNSIGPGSVILLN-------KCMMLKVQSVCHYDSFSEMLEA 193 (293)
Q Consensus 143 IksGkKTIE~RLnDe-------KRq~IkvGD~I~F~-------k~L~v~V~~Vr~Y~SF~eLLe~ 193 (293)
|.+|+-+|++|+-+. +...+++||.+.-. ++..+.+..||.=++|.|+.-+
T Consensus 59 ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~~qi~~~~ir~v~d~Nei~~H 123 (136)
T 4gop_B 59 VEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNRRSISSGHMRPVIDYNEVMFH 123 (136)
T ss_dssp EECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTEEEEEESEEEECSSHHHHHHH
T ss_pred EECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCEEEEEEEEEEECCCccHHHHH
Confidence 457777999998653 46789999999744 6788999999999999887544
No 16
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=47.51 E-value=5.5 Score=29.59 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=33.2
Q ss_pred hHHHhcCCceEEEeecCccccCCCCCCEEEEc---eeEEEEEEEEee-----cCCHHHHHhccC
Q 022692 140 FSFIKDGLETVEGRCTISDYNSIGPGSVILLN---KCMMLKVQSVCH-----YDSFSEMLEAES 195 (293)
Q Consensus 140 F~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~---k~L~v~V~~Vr~-----Y~SF~eLLe~Eg 195 (293)
-.+|++|.=+|-++.. ..-.++++||.|.+. .....+|.++.+ -+....+|+...
T Consensus 20 ~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lyed~~ 82 (92)
T 2k6p_A 20 TDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIAPKT 82 (92)
T ss_dssp CCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSEEECC
T ss_pred HHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceEEEEEeccccccCCCHHHHHHHHHhcC
Confidence 4678899855555554 345579999999987 345555544321 222555555533
No 17
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=46.99 E-value=30 Score=27.35 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=38.8
Q ss_pred HhcCCc-eEEEeecCc------cccCCCCCCEEEE-------ceeEEEEEEEEeecCCHHHHHhc
Q 022692 143 IKDGLE-TVEGRCTIS------DYNSIGPGSVILL-------NKCMMLKVQSVCHYDSFSEMLEA 193 (293)
Q Consensus 143 IksGkK-TIE~RLnDe------KRq~IkvGD~I~F-------~k~L~v~V~~Vr~Y~SF~eLLe~ 193 (293)
|.+|+- +||+|.-+. ....+++||.+.- +++..+.+..|+.=++|.|+.-+
T Consensus 54 ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g~~qi~~~~ir~v~d~Nei~~H 118 (132)
T 3kdf_D 54 IDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTH 118 (132)
T ss_dssp EECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETTEEEEEEEEEEECSSTHHHHHH
T ss_pred EECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECCEEEEEEEEEEEcCCccHHHHH
Confidence 567777 999998653 2678999999874 46788889999999999887543
No 18
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=43.60 E-value=8.2 Score=28.13 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=25.2
Q ss_pred HHHhcCCceEEEeecCccccCCCCCCEEEEcee
Q 022692 141 SFIKDGLETVEGRCTISDYNSIGPGSVILLNKC 173 (293)
Q Consensus 141 ~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~k~ 173 (293)
.+|++|.=+|-++.......++++||.|.+.+.
T Consensus 41 ~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~~ 73 (79)
T 1p9k_A 41 IAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGH 73 (79)
T ss_dssp HHHHHHHHEETTBCCCCSSCCCCSSEEEEETTE
T ss_pred HHHHCCEEEECCEEecCCCCCCCCCCEEEECCE
Confidence 568888777777765556678999999999854
No 19
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=40.97 E-value=38 Score=27.86 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=25.3
Q ss_pred hhccceeeeccccchHHHhcCCceEEEeecCcc--------------ccCCCCCCEEEEc
Q 022692 126 LKAVEFELHVQEPFFSFIKDGLETVEGRCTISD--------------YNSIGPGSVILLN 171 (293)
Q Consensus 126 l~~v~heM~L~e~yF~lIksGkKTIE~RLnDeK--------------Rq~IkvGD~I~F~ 171 (293)
++.....+.|+.+ | |+.++|+...+ -.+|++||.++|.
T Consensus 75 lp~~~~~i~L~~~-------g-k~W~v~~~~~~~~~~ls~GW~~Fv~dn~L~~GD~cvFe 126 (146)
T 4i1k_A 75 LSGISGFIKVQLA-------E-KQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFE 126 (146)
T ss_dssp CTTCCSEEEEEET-------T-EEEEEEEEEETTEEEECTTHHHHHHHTTCCTTCEEEEE
T ss_pred CCCCCeEEEEEEC-------C-cEEEEEEEEeCCcEEECCchHHHHHHcCCCCCCEEEEE
Confidence 4444445555543 5 88888875322 2789999999998
No 20
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=38.12 E-value=46 Score=25.11 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=40.4
Q ss_pred eeccccchHHHhcCCceEEEeecC-ccccCCCCCCEEEEc--e-eE-EEEEEEEeec
Q 022692 133 LHVQEPFFSFIKDGLETVEGRCTI-SDYNSIGPGSVILLN--K-CM-MLKVQSVCHY 184 (293)
Q Consensus 133 M~L~e~yF~lIksGkKTIE~RLnD-eKRq~IkvGD~I~F~--k-~L-~v~V~~Vr~Y 184 (293)
+.|.+.+...+.=..=|..-++.+ ...+.+++||.|.|. + .= .-.|++|+.=
T Consensus 18 iTi~H~pI~~l~wPaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~ 74 (82)
T 2l55_A 18 LIIAHEAIPSAQWGAMTMEFAAPPAGLPQGLKAGDRVAFSFRLDPHGMATLVTVAPQ 74 (82)
T ss_dssp EEEEECCCTTTTCCCEEEEEECCTTCCCSSCSTTCEEEEEEEEETTTEEEEEEEEEC
T ss_pred EEEecCCccccCCCceEEEEEcCChhHhhcCCCCCEEEEEEEECCCCeEEEEEEEec
Confidence 778888888888888899999986 568899999999998 1 11 3456777653
No 21
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=37.98 E-value=7.5 Score=37.19 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=30.6
Q ss_pred eEEEeecCc-----------cccCCCCCCEEEEc--------eeEEEEEEEE-------eecCC-HHHHHhccCccccCC
Q 022692 149 TVEGRCTIS-----------DYNSIGPGSVILLN--------KCMMLKVQSV-------CHYDS-FSEMLEAESLVKVLP 201 (293)
Q Consensus 149 TIE~RLnDe-----------KRq~IkvGD~I~F~--------k~L~v~V~~V-------r~Y~S-F~eLLe~EgL~kvlP 201 (293)
.||+.|..+ ..+++|+|+.|.|. +.+.++|++. -+|+. |.++|++.|--. +|
T Consensus 79 ~iEvlll~~~~~~~w~~lv~p~kk~k~G~~l~f~~~~~~~~~~~l~a~v~~~~~~g~r~~~f~~~~~~~L~~~G~~P-LP 157 (345)
T 1wdi_A 79 KVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQGDLVAHLEEVGEVP-LP 157 (345)
T ss_dssp EEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC----------CCEEESCCCSCC---
T ss_pred eEEEEEeeEcCCCeEEEEeccCCCCCCCCEEEecccccccCCCceEEEEEEecCCCcEEEEECCcHHHHHHHCCCCC-CC
Confidence 588877652 13689999999996 4588888864 22332 555566543322 33
Q ss_pred CCCCHHHHHHHHHhcCChHH
Q 022692 202 GVKTIEEVLQVYKFIENSTQ 221 (293)
Q Consensus 202 G~~SiEEgv~~yr~iYSkEk 221 (293)
-+-..++-.+.|...|.++.
T Consensus 158 PYI~r~~D~erYQTVyAk~~ 177 (345)
T 1wdi_A 158 PYIKAKIPMERYQTVYARRP 177 (345)
T ss_dssp --------------------
T ss_pred CccCCCCChHHhhhhhcCCC
Confidence 33222245567888888643
No 22
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=37.74 E-value=30 Score=27.44 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=26.0
Q ss_pred eeeeccccchHHHhcCCceEEEeecCccccCCCCCCEEEEc
Q 022692 131 FELHVQEPFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN 171 (293)
Q Consensus 131 heM~L~e~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~ 171 (293)
+..+-...-|-.|-+|+=+|++ + ++...+++||.|.|.
T Consensus 69 ~~~h~~~~E~~~VLeG~~~l~~--~-g~~~~l~~GD~i~~p 106 (133)
T 2pyt_A 69 FPWTLNYDEIDMVLEGELHVRH--E-GETMIAKAGDVMFIP 106 (133)
T ss_dssp EEEECSSEEEEEEEEEEEEEEE--T-TEEEEEETTCEEEEC
T ss_pred ccccCCCCEEEEEEECEEEEEE--C-CEEEEECCCcEEEEC
Confidence 3344445556677788666555 4 455589999999998
No 23
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=36.20 E-value=29 Score=27.15 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhhHhhCCCc
Q 022692 69 PLYKRLALALCRSVNCGAFC 88 (293)
Q Consensus 69 ply~~la~~l~~~~~~~~~~ 88 (293)
|||+.++..|.+.|.+|.+.
T Consensus 14 PlY~QI~~~i~~~I~~G~l~ 33 (134)
T 4ham_A 14 PIYEQIVQKIKEQVVKGVLQ 33 (134)
T ss_dssp CHHHHHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHHHHHHcCCCC
Confidence 79999999999999999874
No 24
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=33.63 E-value=27 Score=24.73 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=12.7
Q ss_pred ccccCCCCCCEEEEce
Q 022692 157 SDYNSIGPGSVILLNK 172 (293)
Q Consensus 157 eKRq~IkvGD~I~F~k 172 (293)
+..-.+++||.|.|.+
T Consensus 18 P~~i~v~~Gd~V~~~n 33 (91)
T 1bxv_A 18 PSTIEIQAGDTVQWVN 33 (91)
T ss_dssp SSEEEECTTCEEEEEE
T ss_pred CCEEEECCCCEEEEEE
Confidence 3556789999999974
No 25
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=30.36 E-value=66 Score=24.33 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=23.8
Q ss_pred cchHHHhcCCceEEEeecCccccCCCCCCEEEEc
Q 022692 138 PFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN 171 (293)
Q Consensus 138 ~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~ 171 (293)
.-|-+|-+|+= ++++++++...+++||.|.|.
T Consensus 50 ~E~~~Vl~G~~--~~~i~~g~~~~l~~GD~i~ip 81 (101)
T 1o5u_A 50 NETCYILEGKV--EVTTEDGKKYVIEKGDLVTFP 81 (101)
T ss_dssp CEEEEEEEEEE--EEEETTCCEEEEETTCEEEEC
T ss_pred eEEEEEEeCEE--EEEECCCCEEEECCCCEEEEC
Confidence 34556777764 445565778899999999998
No 26
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=29.56 E-value=75 Score=28.18 Aligned_cols=54 Identities=11% Similarity=0.179 Sum_probs=40.2
Q ss_pred ccchHH-HhcCCc-eEEEeecCc------cccCCCCCCEEEEc-------eeEEEEEEEEeecCCHHHH
Q 022692 137 EPFFSF-IKDGLE-TVEGRCTIS------DYNSIGPGSVILLN-------KCMMLKVQSVCHYDSFSEM 190 (293)
Q Consensus 137 e~yF~l-IksGkK-TIE~RLnDe------KRq~IkvGD~I~F~-------k~L~v~V~~Vr~Y~SF~eL 190 (293)
..|+.+ |.+|+- +|++|+-+. ....+++|+.|... +...+.+..||.=++|.++
T Consensus 87 ~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~g~~qi~i~~ir~v~d~nEi 155 (270)
T 2pi2_A 87 PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEF 155 (270)
T ss_dssp SSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETTEEEEEEEEEEECSCTHHH
T ss_pred cceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecCCeeEEEEEEEEecCCHhHH
Confidence 344443 456776 899998753 35779999998744 6788999999999998886
No 27
>1t62_A Conserved hypothetical protein; NYSGXRC, target T1587, unknown function, PSI, protein struct initiative; 3.00A {Enterococcus faecalis} SCOP: b.122.1.4
Probab=26.44 E-value=1e+02 Score=26.48 Aligned_cols=125 Identities=9% Similarity=0.016 Sum_probs=69.8
Q ss_pred HHHHHHHhhcChhhHHhhhhccceeeec-----cccchHHHhcCCceEEEeecCc----cccCCCCCCE-EEEc------
Q 022692 108 EEWSQLILNKGSSDLVDILKAVEFELHV-----QEPFFSFIKDGLETVEGRCTIS----DYNSIGPGSV-ILLN------ 171 (293)
Q Consensus 108 ~~W~~l~~~kG~~el~~~l~~v~heM~L-----~e~yF~lIksGkKTIE~RLnDe----KRq~IkvGD~-I~F~------ 171 (293)
+=|++.....+.. .+ .+..|.++- .++.-++|.+|+||--.++.+. .-.--++||. |+.+
T Consensus 7 ~~W~~y~~~~~~~--~~--~~~~~~FG~~~~~lad~L~~LVl~G~KTAT~s~~~~Y~~~~e~lP~vG~~~Ivld~~g~pv 82 (166)
T 1t62_A 7 VFWQNFLDKHELD--ML--MPDVWMFGDGSSEMGNRLGQLVVSGRKTATCSSLDIYKMEEEQLPKAGQYDIILDGQSQPL 82 (166)
T ss_dssp HHHHHHHHHHCCC--CC--CCEEECCSSSCHHHHHHHHHHHHHTSCCEEEEESTTSCTTTCCCCCTTCEEEEECTTSCEE
T ss_pred HHHHHHHHhccCc--cC--CcceeecCCCCHHHHHHHHHHHHcCCeEEEecCHHHHhhcCCCCCCCCcEEEEEcCCCCEE
Confidence 5587765433321 11 334566664 4568999999999999998642 2224489965 4444
Q ss_pred eeEEEEEEEEeecCCHHHHHhccCccccCCCCCCHHHHHHHHHhcCChHHHhhcCC-------eEEEEEeeccCCCC
Q 022692 172 KCMMLKVQSVCHYDSFSEMLEAESLVKVLPGVKTIEEVLQVYKFIENSTQRRRKGP-------MVSLQYAFPKWLLS 241 (293)
Q Consensus 172 k~L~v~V~~Vr~Y~SF~eLLe~EgL~kvlPG~~SiEEgv~~yr~iYSkEkE~qyGV-------~VAIeI~lp~~~~~ 241 (293)
..+.++-+.+.+|..-.+=.-. +-+-|-.|+++=.+.-..||++|-.. .|. +|..+++++-....
T Consensus 83 cii~tt~V~~~pf~eVt~e~A~----~EGEGD~Sl~~Wr~~H~~ff~~e~~~-~g~~f~~d~~vV~E~FevV~~~~~ 154 (166)
T 1t62_A 83 AIIRTTKVEIMPMNKVSESFAQ----AEGEGDLTLDYWYEEHARFFKEELAP-YQLQFYPDMLLVCQSFEVVDLYTE 154 (166)
T ss_dssp EEEEEEEEEEEEGGGCCHHHHH----HHC-----CTHHHHHHHHHHHHHHTT-TTCCCCTTCEEEEEEEEEEECCC-
T ss_pred EEEEEEEEEEEEcccCCHHHHH----HhCCCCCCHHHHHHHHHHHHHHHHHh-cCCCCCCCceEEEEEEEEEEEcCC
Confidence 2355555566666543322111 11234457788778888888765432 332 26777777655444
No 28
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=23.70 E-value=40 Score=24.65 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=12.5
Q ss_pred ccccCCCCCCEEEEce
Q 022692 157 SDYNSIGPGSVILLNK 172 (293)
Q Consensus 157 eKRq~IkvGD~I~F~k 172 (293)
+..-.+++||+|.|.+
T Consensus 19 P~~i~v~~Gd~V~~~n 34 (106)
T 2gim_A 19 PAKLTIKPGDTVEFLN 34 (106)
T ss_dssp SSEEEECTTCEEEEEE
T ss_pred CCEEEECCCCEEEEEE
Confidence 4556789999999963
No 29
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=22.02 E-value=91 Score=24.48 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=22.5
Q ss_pred cchHHHhcCCceEEEeecCccccCCCCCCEEEEc
Q 022692 138 PFFSFIKDGLETVEGRCTISDYNSIGPGSVILLN 171 (293)
Q Consensus 138 ~yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~ 171 (293)
.-|-.|-+|+=+|. +.+++...+++||.+.|-
T Consensus 69 ~E~~~Vl~G~~~l~--~~~g~~~~l~~GD~~~ip 100 (123)
T 3bcw_A 69 IEYCHIIEGEARLV--DPDGTVHAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEEEEEEEEE--CTTCCEEEEETTCEEEEC
T ss_pred cEEEEEEEEEEEEE--ECCCeEEEECCCCEEEEC
Confidence 34455666654444 446777889999999998
No 30
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=22.00 E-value=44 Score=24.97 Aligned_cols=34 Identities=6% Similarity=-0.075 Sum_probs=23.2
Q ss_pred chHHHhcCCceEEEeecC----ccccCCCCCCEEEEce
Q 022692 139 FFSFIKDGLETVEGRCTI----SDYNSIGPGSVILLNK 172 (293)
Q Consensus 139 yF~lIksGkKTIE~RLnD----eKRq~IkvGD~I~F~k 172 (293)
+|..=..-.++++|+..+ +..-.|++||+|.|.+
T Consensus 10 ~~~~~~~~a~~~~V~~~~~~F~P~~i~v~~Gd~V~~~N 47 (105)
T 2ov0_A 10 PFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWIN 47 (105)
T ss_dssp CEEGGGCCTTCEEEEEETTEESSSEEEECTTCEEEEEE
T ss_pred CCCCCCCCCcCEEEEEeecEEcCCEEEECCCCEEEEEE
Confidence 344334446777777543 6666889999999974
No 31
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=21.86 E-value=44 Score=25.15 Aligned_cols=34 Identities=9% Similarity=-0.049 Sum_probs=23.5
Q ss_pred chHHHhcCCceEEEeecC----ccccCCCCCCEEEEce
Q 022692 139 FFSFIKDGLETVEGRCTI----SDYNSIGPGSVILLNK 172 (293)
Q Consensus 139 yF~lIksGkKTIE~RLnD----eKRq~IkvGD~I~F~k 172 (293)
+|..=..-.++++|...+ +..-.|++||+|.|.+
T Consensus 11 ~~~~~~~~~~~~~V~~~~~~F~P~~i~V~~G~tV~~~N 48 (106)
T 1id2_A 11 PVAAADVPADAVVVGIEKMKYLTPEVTIKAGETVYWVN 48 (106)
T ss_dssp CEEGGGSCTTCEEEEEETTEESSSEEEECTTCEEEEEE
T ss_pred CCCCCCCCCccEEEEEEecEEeCCEEEECCCCEEEEEE
Confidence 343334455778887654 6666889999999973
No 32
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=21.47 E-value=64 Score=27.96 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=39.1
Q ss_pred chHHHhcCCceEEEeecCccccCCCCCCEEEEc----------eeEEEEEEEEeecCCHHHHHhccC
Q 022692 139 FFSFIKDGLETVEGRCTISDYNSIGPGSVILLN----------KCMMLKVQSVCHYDSFSEMLEAES 195 (293)
Q Consensus 139 yF~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~----------k~L~v~V~~Vr~Y~SF~eLLe~Eg 195 (293)
-+-+|-+|+=++ ++++ +...+++||.|.|. .. .+++.-|-..+.|+++++..+
T Consensus 241 e~~~vl~G~~~~--~i~~-~~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~~~~~~~~~~~~ 303 (337)
T 1y3t_A 241 ETFYCLEGQMTM--WTDG-QEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVPGLFEPFFRTLG 303 (337)
T ss_dssp EEEEEEESCEEE--EETT-EEEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEESSTTTHHHHHHS
T ss_pred EEEEEEeCEEEE--EECC-EEEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcCccHHHHHHHhc
Confidence 344888998555 4444 66789999999997 12 567777888888988888744
No 33
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=21.13 E-value=50 Score=27.45 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=23.3
Q ss_pred HHHhcCCceEEEeecCccccCCCCCCEEEEce
Q 022692 141 SFIKDGLETVEGRCTISDYNSIGPGSVILLNK 172 (293)
Q Consensus 141 ~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~k 172 (293)
++|++|.=+|-++..+..-..+++||.|.+..
T Consensus 71 ~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 71 QLVTHGHILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp HHHHTTCEEETTEECCCSSCBCCTTCEEEECG
T ss_pred HHHHCCCEEECCEEeCcCCcEeCCCCEEEEeC
Confidence 67888986666655544456799999998863
No 34
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=21.10 E-value=46 Score=25.93 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=19.6
Q ss_pred cCCceEEEeecC------ccccCCCCCCEEEEc
Q 022692 145 DGLETVEGRCTI------SDYNSIGPGSVILLN 171 (293)
Q Consensus 145 sGkKTIE~RLnD------eKRq~IkvGD~I~F~ 171 (293)
+...+|+|+..+ ++.-.+++||+|+|.
T Consensus 14 ~~~~~v~V~~~~~~~~F~P~~i~v~~G~tV~~~ 46 (140)
T 1qhq_A 14 TPAQTVEVRAAPDALAFAQTSLSLPANTVVRLD 46 (140)
T ss_dssp CCSEEEEEEBCSSSSSBSCSEEEEETTCEEEEE
T ss_pred CCCEEEEEEEeCCCceEeCCeEEECCCCEEEEE
Confidence 456889998743 445577889988864
No 35
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=20.40 E-value=52 Score=27.49 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=23.6
Q ss_pred CCceEEEeecCcc----ccCCCCCCEEEEce
Q 022692 146 GLETVEGRCTISD----YNSIGPGSVILLNK 172 (293)
Q Consensus 146 GkKTIE~RLnDeK----Rq~IkvGD~I~F~k 172 (293)
|+.|+.|-|.|+. |+.+++||.+.++|
T Consensus 63 G~~tlqVtlwd~ha~~ar~~lk~Gd~v~L~N 93 (143)
T 4hik_A 63 GRFSIRCILWDEHDFYCRNYIKEGDYVVMKN 93 (143)
T ss_dssp BSCCEEEEECHHHHHHHTTTCCTTCEEEEEE
T ss_pred CcEEEEEEEECcHHHHHHhhCCCCCEEEEEe
Confidence 9999999999954 57799999999974
No 36
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=20.15 E-value=61 Score=26.00 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=22.8
Q ss_pred hHHHhcCCceEEEeecCccccCCCCCCEEEEc
Q 022692 140 FSFIKDGLETVEGRCTISDYNSIGPGSVILLN 171 (293)
Q Consensus 140 F~lIksGkKTIE~RLnDeKRq~IkvGD~I~F~ 171 (293)
|=.|-+|+=+| +-.|.....+++||.+.|-
T Consensus 64 ~~~iLeG~~~l--t~ddG~~~~l~aGD~~~~P 93 (116)
T 3es4_A 64 TFVVVEGEALY--SQADADPVKIGPGSIVSIA 93 (116)
T ss_dssp EEEEEECCEEE--EETTCCCEEECTTEEEEEC
T ss_pred EEEEEEeEEEE--EeCCCeEEEECCCCEEEEC
Confidence 44566676444 4567888899999999998
No 37
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=20.05 E-value=23 Score=28.63 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=19.1
Q ss_pred CCCCChhHHHHHHHHHHhhHhhCCC
Q 022692 63 QGVPLYPLYKRLALALCRSVNCGAF 87 (293)
Q Consensus 63 ~gvp~yply~~la~~l~~~~~~~~~ 87 (293)
=-.|+|+=++.|...|..+|+++.|
T Consensus 91 L~LP~Y~s~e~L~~kL~~AI~~~gf 115 (118)
T 3pt3_A 91 LYVPLYSSKQILKQKLLLAIKTKNF 115 (118)
T ss_dssp EEEECCSSHHHHHHHHHHHHC----
T ss_pred eECCCCCCHHHHHHHHHHHHHhCCc
Confidence 3579999999999999999998654
Done!