BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022693
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QZ4|A Chain A, Crystal Structure Of An Endo-1,4-Beta-Xylanase D (Bt_3675)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.74 A
Resolution
pdb|3QZ4|B Chain B, Crystal Structure Of An Endo-1,4-Beta-Xylanase D (Bt_3675)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.74 A
Resolution
Length = 311
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 100 ARCIGEKKINGEDCFILKLCADPSTLKARSEGPA 133
A CI EKKI+G+ + A+P+T K + G A
Sbjct: 79 APCIEEKKIDGKYKYFFYYSANPTTNKGKQIGVA 112
>pdb|3CUY|A Chain A, Crystal Structure Of Gumk Mutant D157a
pdb|3CV3|A Chain A, Crystal Structure Of Gumk Mutant D157a In Complex With Udp
Length = 406
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 147 KTGLLVHLEDSHLTRIQNNGGDAVYWETTINSFLDD---YRPVEGIMI----AHSGRSIV 199
K + + L+D+ T + +NG D W TT++ F RPVE M AH + ++
Sbjct: 60 KGDMRLPLDDTANTVVSHNGVDCYLWRTTVHPFNTRRSWLRPVEDAMFRWYAAHPPKQLL 119
Query: 200 TLFRFGDT 207
R D
Sbjct: 120 DWMRESDV 127
>pdb|2HY7|A Chain A, Crystal Structure Of Gumk, A Beta-Glucuronosyltransferase
From Xanthomonas Campestris
pdb|2Q6V|A Chain A, Crystal Structure Of Gumk In Complex With Udp
Length = 406
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 147 KTGLLVHLEDSHLTRIQNNGGDAVYWETTINSFLDD---YRPVEGIMI----AHSGRSIV 199
K + + L+D+ T + +NG D W TT++ F RPVE M AH + ++
Sbjct: 60 KGDMRLPLDDTANTVVSHNGVDCYLWRTTVHPFNTRRSWLRPVEDAMFRWYAAHPPKQLL 119
Query: 200 TLFRFGDT 207
R D
Sbjct: 120 DWMRESDV 127
>pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima
Length = 344
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 102 CIGE---------KKINGEDCFILKLCADPSTLKARSEGPAEIIRHVLFGYFSQKTGLLV 152
CIGE K++ GE +LK DP L A + PA +I + ++ +LV
Sbjct: 250 CIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKAARVLV 309
Query: 153 HLEDSHLTRIQNNGGDAVYWETTINSFLDDYRPV 186
+ L+ GG + + D +P+
Sbjct: 310 P--PTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341
>pdb|1L2F|A Chain A, Crystal Structure Of Nusa From Thermotoga Maritima: A
Structure-Based Role Of The N-Terminal Domain
Length = 369
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 102 CIGE---------KKINGEDCFILKLCADPSTLKARSEGPAEIIRHVLFGYFSQKTGLLV 152
CIGE K++ GE +LK DP L A + PA +I + ++ +LV
Sbjct: 275 CIGEGGSRIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEILDKENKAARVLV 334
Query: 153 HLEDSHLTRIQNNGGDAVYWETTINSFLDDYRPV 186
+ L+ GG + + D +P+
Sbjct: 335 P--PTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 366
>pdb|1YCF|A Chain A, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
pdb|1YCF|B Chain B, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
pdb|1YCF|C Chain C, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
pdb|1YCF|D Chain D, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
pdb|1YCG|A Chain A, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
Diiron Site Structure And Mechanistic Insights Into A
Scavenging Nitric Oxide Reductase
pdb|1YCG|B Chain B, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
Diiron Site Structure And Mechanistic Insights Into A
Scavenging Nitric Oxide Reductase
pdb|1YCG|C Chain C, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
Diiron Site Structure And Mechanistic Insights Into A
Scavenging Nitric Oxide Reductase
pdb|1YCG|D Chain D, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
Diiron Site Structure And Mechanistic Insights Into A
Scavenging Nitric Oxide Reductase
pdb|1YCH|A Chain A, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
Novel Diiron Site Structure And Mechanistic Insights
Into A Scavenging Nitric Oxide Reductase
pdb|1YCH|B Chain B, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
Novel Diiron Site Structure And Mechanistic Insights
Into A Scavenging Nitric Oxide Reductase
pdb|1YCH|C Chain C, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
Novel Diiron Site Structure And Mechanistic Insights
Into A Scavenging Nitric Oxide Reductase
pdb|1YCH|D Chain D, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
Novel Diiron Site Structure And Mechanistic Insights
Into A Scavenging Nitric Oxide Reductase
Length = 398
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 115 ILKLCADPSTLKARS--EGPAEIIRHVLFGYFSQKTGLLVHLEDSHLTRIQNNGGDAVYW 172
I++LC D L + + H+ F Y KTG V L LT I+ ++W
Sbjct: 92 IMELCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIE---APMLHW 148
Query: 173 ETTINSFLDDYRPVEGIMIAHS--GRSIVTLFRFGD 206
++ + Y P E +++ + G+ I T RF D
Sbjct: 149 PDSMFT----YVPEEALLLPNDAFGQHIATSVRFDD 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,819,839
Number of Sequences: 62578
Number of extensions: 352099
Number of successful extensions: 742
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 14
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)