BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022693
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DE14|ATR_XENLA Serine/threonine-protein kinase atr OS=Xenopus laevis GN=atr PE=1
SV=2
Length = 2654
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 91 RTTASMFINARCIGEKKINGEDCF---------ILKLCADPSTLKARSEGPAEIIRHVLF 141
++T MF++A + ++C +L++ A PS KA AE+IR +LF
Sbjct: 78 KSTPLMFLSANNGDQSAETNQNCVAFSNWIISRLLRIGATPSC-KALHRKIAEVIRSLLF 136
Query: 142 GYFSQKTGL-------LVHLEDSHLTRIQNNGGDAVYWETTINSFLDD 182
+ ++ + L L+HL + + + N +V W TI+ FL +
Sbjct: 137 LFKNKSSFLFGVFTKDLLHLFEDLIYIHEQNMEKSVVWPVTISRFLSN 184
>sp|B3PC08|GATA_CELJU Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cellvibrio
japonicus (strain Ueda107) GN=gatA PE=3 SV=1
Length = 484
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 19/124 (15%)
Query: 119 CADPSTL-----KARSEG-PAEIIRHVLFGYFSQKTGLLVHLEDSHLTRIQNNGGDAVYW 172
C DP L ++RSEG AE+ R +L G ++ G D++ ++ Q
Sbjct: 330 CEDPKDLMDLYMRSRSEGFGAEVKRRILVGTYALSAGYY----DAYYSKAQK------VR 379
Query: 173 ETTINSFLDDYRPVEGIMIAHSGRSIVTLFRFGDTAMSHTRTRMEEAWAIDEVAFNVPGL 232
F+D + V+ I+ S F FG +E+ + I +PGL
Sbjct: 380 RLIKQDFVDAFHHVDVIL---GPTSPSPAFEFGSKGKDPVAMYLEDIYTIATNLAGLPGL 436
Query: 233 SVDC 236
S+ C
Sbjct: 437 SIPC 440
>sp|Q723B1|LACD_LISMF Tagatose 1,6-diphosphate aldolase OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=lacD PE=3 SV=1
Length = 338
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 75 KGPVRPLRRALQGLDPRTTASMFINARCIGEKKINGEDCFILKLCADPSTLKARSEGPAE 134
+G ++ + + +G + + F + + E+ +L L +KAR EG
Sbjct: 30 RGSLKKMIQQAKGTENKKDVEDF--KQLVSEELTPYASAILLDLEYGTPAIKARHEGSGL 87
Query: 135 IIRHVLFGYFSQKTGLLVHL-EDSHLTRIQNNGGDAVYWETTINSFLDDYRPVE 187
+ + GY + G L L ED RI+ NGGDAV I + D P E
Sbjct: 88 LTSYEKTGYDATTPGKLPDLIEDLSALRIKENGGDAV----KILVYYDPDEPAE 137
>sp|C1L056|LACD_LISMC Tagatose 1,6-diphosphate aldolase OS=Listeria monocytogenes
serotype 4b (strain CLIP80459) GN=lacD PE=3 SV=1
Length = 338
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 75 KGPVRPLRRALQGLDPRTTASMFINARCIGEKKINGEDCFILKLCADPSTLKARSEGPAE 134
+G ++ + + +G + + F + + E+ +L L +KAR EG
Sbjct: 30 RGSLKKMIQQAKGTENKKDVEDF--KQLVSEELTPYASAILLDLEYGTPAIKARHEGSGL 87
Query: 135 IIRHVLFGYFSQKTGLLVHL-EDSHLTRIQNNGGDAVYWETTINSFLDDYRPVE 187
+ + GY + G L L ED RI+ NGGDAV I + D P E
Sbjct: 88 LTSYEKTGYDATTPGKLPDLIEDLSALRIKENGGDAV----KILVYYDPDEPAE 137
>sp|Q8Y9I9|LACD_LISMO Tagatose 1,6-diphosphate aldolase OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=lacD PE=3 SV=1
Length = 338
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 75 KGPVRPLRRALQGLDPRTTASMFINARCIGEKKINGEDCFILKLCADPSTLKARSEGPAE 134
+G ++ + + +G + + F + + E+ +L L +KAR EG
Sbjct: 30 RGSLKKMIQQAKGTENKKDVEDF--KQLVSEELTPYASAILLDLEYGTPAIKARHEGSGL 87
Query: 135 IIRHVLFGYFSQKTGLLVHL-EDSHLTRIQNNGGDAVYWETTINSFLDDYRPVE 187
+ + GY + G L L ED RI+ NGGDAV I + D P E
Sbjct: 88 LTSYEKTGYDATTPGKLPDLIEDLSALRIKENGGDAV----KILVYYDPDEPAE 137
>sp|B8DA86|LACD_LISMH Tagatose 1,6-diphosphate aldolase OS=Listeria monocytogenes
serotype 4a (strain HCC23) GN=lacD PE=3 SV=1
Length = 338
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 75 KGPVRPLRRALQGLDPRTTASMFINARCIGEKKINGEDCFILKLCADPSTLKARSEGPAE 134
+G ++ + + +G + + F + + E+ +L L +KAR EG
Sbjct: 30 RGSLKKMIQQAKGTENKKDVEDF--KQLVSEELTPYASAILLDLEYGTPAIKARHEGSGL 87
Query: 135 IIRHVLFGYFSQKTGLLVHL-EDSHLTRIQNNGGDAVYWETTINSFLDDYRPVE 187
+ + GY + G L L ED RI+ NGGDAV I + D P E
Sbjct: 88 LTSYEKTGYDATTPGKLPDLIEDLSALRIKENGGDAV----KILVYYDPDEPAE 137
>sp|Q92EB7|LACD_LISIN Tagatose 1,6-diphosphate aldolase OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=lacD PE=3 SV=1
Length = 338
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 75 KGPVRPLRRALQGLDPRTTASMFINARCIGEKKINGEDCFILKLCADPSTLKARSEGPAE 134
+G ++ + + +G + + F + + E+ +L L +KAR EG
Sbjct: 30 RGSLKKMIQQAKGTENKKDVEDF--KQLVSEELTPYASAILLDLEYGTPAIKARHEGSGL 87
Query: 135 IIRHVLFGYFSQKTGLLVHL-EDSHLTRIQNNGGDAVYWETTINSFLDDYRPVE 187
+ + GY + G L L ED RI+ NGGDAV I + D P E
Sbjct: 88 LTSYEKTGYDATTPGKLPDLIEDLSALRIKENGGDAV----KILVYYDPDEPAE 137
>sp|D2HXI8|GWL_AILME Serine/threonine-protein kinase greatwall OS=Ailuropoda melanoleuca
GN=MASTL PE=3 SV=1
Length = 882
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 142 GYFSQKTGLLVHLEDSHLTRIQNNGGDAVYWETTINSFLD 181
GY +Q+TGL ++D L+ D E +NSF+D
Sbjct: 478 GYINQRTGLTTEVQDLKLSVCGGQQSDCANKENMVNSFID 517
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,312,495
Number of Sequences: 539616
Number of extensions: 4394414
Number of successful extensions: 7922
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7920
Number of HSP's gapped (non-prelim): 9
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)