Query 022693
Match_columns 293
No_of_seqs 80 out of 82
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 05:28:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04788 DUF620: Protein of un 100.0 8E-142 2E-146 959.7 21.4 240 1-240 4-245 (245)
2 PRK09455 rseB anti-sigma E fac 61.4 11 0.00023 36.2 4.0 46 99-156 128-173 (319)
3 PF14371 DUF4412: Domain of un 58.1 18 0.00039 27.1 4.0 17 103-119 4-20 (89)
4 PRK02939 lipoprotein; Reviewed 46.4 50 0.0011 31.3 5.7 65 2-66 44-128 (236)
5 PF09865 DUF2092: Predicted pe 44.4 1.7E+02 0.0037 26.9 8.7 93 31-123 42-151 (214)
6 COG5017 Uncharacterized conser 38.7 9.2 0.0002 34.4 -0.3 31 172-206 55-86 (161)
7 KOG1963 WD40 repeat protein [G 35.7 3.3E+02 0.0072 30.2 10.4 187 27-261 270-459 (792)
8 KOG2833 Mevalonate pyrophospha 34.9 29 0.00064 34.9 2.4 65 25-89 159-247 (395)
9 KOG0968 DNA polymerase zeta, c 33.7 1.3 2.9E-05 49.7 -7.5 81 132-229 758-842 (1488)
10 PF05717 TnpB_IS66: IS66 Orf2 29.6 46 0.00099 27.4 2.4 45 28-92 54-100 (107)
11 PF03888 MucB_RseB: MucB/RseB 28.3 98 0.0021 29.0 4.6 48 97-156 94-141 (285)
12 cd08394 C2A_Munc13 C2 domain f 27.7 1.2E+02 0.0025 26.0 4.6 39 17-66 8-48 (127)
13 KOG0189 Phosphoadenosine phosp 25.4 32 0.00069 33.0 0.9 36 27-92 117-152 (261)
14 COG2834 LolA Outer membrane li 24.4 4.2E+02 0.0092 23.4 7.7 38 32-70 61-98 (211)
15 cd06911 VirB9_CagX_TrbG VirB9/ 23.5 2.3E+02 0.005 21.8 5.2 52 154-206 22-77 (86)
16 PF08356 EF_assoc_2: EF hand a 21.5 32 0.0007 28.0 0.1 36 213-256 44-86 (89)
17 cd07239 BphC5-RK37_C_like C-te 21.4 1.3E+02 0.0029 24.4 3.7 38 31-68 99-137 (144)
18 smart00392 PROF Profilin. Bind 20.5 2.7E+02 0.0059 22.9 5.3 66 53-131 21-87 (129)
No 1
>PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins.
Probab=100.00 E-value=8.5e-142 Score=959.73 Aligned_cols=240 Identities=71% Similarity=1.254 Sum_probs=237.0
Q ss_pred CCcEEEEEeeeeecceeeeecCCCCCcceeeEEEEeeCCCceEEEEeeCCceeeeccCCceeeeecCCCCccccCCCCch
Q 022693 1 MGRVTMIASEFEKGNKVTRSRNSSKGAESGGFVLWQMNPDMWYVELALGDSKVHAGCNGKLVWRHTPWLGAHAAKGPVRP 80 (293)
Q Consensus 1 mG~vrm~~se~~~~~~~v~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWRhTpw~g~HaakGp~RP 80 (293)
||||||.+|||+++++.+++.+.++.+|+||||||||+||||||||||||+||+||||||||||||||||+||+||||||
T Consensus 4 ~GkVrM~~se~~~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~g~HAakGp~RP 83 (245)
T PF04788_consen 4 MGKVRMAASEFEGGSGSVTKVGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQGSHAAKGPPRP 83 (245)
T ss_pred eeeEEEEEEeeccCCccccccccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCccccchhhcCCCch
Confidence 79999999999999988888777889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCccccccceeeeeeeeeeeecCceeeEEEeecCccccccccCCCceEEEeeeeeccccccceeEEeeceeee
Q 022693 81 LRRALQGLDPRTTASMFINARCIGEKKINGEDCFILKLCADPSTLKARSEGPAEIIRHVLFGYFSQKTGLLVHLEDSHLT 160 (293)
Q Consensus 81 LRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFiLkl~~~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDS~Lt 160 (293)
|||||||||||+|||||++|+|||||+|||||||||||++||++|++||++++|||||++||||||||||||||||||||
T Consensus 84 LRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDS~L~ 163 (245)
T PF04788_consen 84 LRRFLQGLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGLLVQLEDSHLT 163 (245)
T ss_pred HHHHHhhcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccceeeeeecceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeec--CCCCeeEEEeecccccccccccCceeeecCCcceEEEEEecCcccccccceeeeeeeeeeeeecCCCCCccccC
Q 022693 161 RIQN--NGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSIVTLFRFGDTAMSHTRTRMEEAWAIDEVAFNVPGLSVDCFI 238 (293)
Q Consensus 161 RIqs--~~~~~vyWETTieS~i~DYR~VdGi~IAH~G~t~vtl~RfGe~~~~h~~TrMEE~WtIeeV~FNV~GLS~DcFi 238 (293)
|||+ +++++|||||||||+|+|||+||||||||+|+|+||||||||++++|+||||||+|+|||||||||||||||||
T Consensus 164 ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h~rTrmEE~W~Ieev~FNV~GLS~DcFi 243 (245)
T PF04788_consen 164 RIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSHSRTRMEETWTIEEVDFNVPGLSMDCFI 243 (245)
T ss_pred EeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccCceeeEeeeeEeeeEEeccCCcchhccc
Confidence 9999 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 022693 239 PP 240 (293)
Q Consensus 239 PP 240 (293)
||
T Consensus 244 PP 245 (245)
T PF04788_consen 244 PP 245 (245)
T ss_pred CC
Confidence 99
No 2
>PRK09455 rseB anti-sigma E factor; Provisional
Probab=61.41 E-value=11 Score=36.23 Aligned_cols=46 Identities=9% Similarity=0.282 Sum_probs=33.6
Q ss_pred eeeeeeeeeecCceeeEEEeecCccccccccCCCceEEEeeeeeccccccceeEEeec
Q 022693 99 NARCIGEKKINGEDCFILKLCADPSTLKARSEGPAEIIRHVLFGYFSQKTGLLVHLED 156 (293)
Q Consensus 99 ~A~cvGEk~i~gedCFiLkl~~~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lED 156 (293)
+-...|+.+|+|-+|++|.+.+.-. .+.- .-=|-++.||||+|.+-
T Consensus 128 ~~~~~g~~rVaGr~~~vi~~~PkD~-------~rY~-----~~lwiD~et~llLk~~~ 173 (319)
T PRK09455 128 DFISVGRTRIADRLCQVIRIVPKDG-------TRYS-----YIVWIDEESKLPLRVDL 173 (319)
T ss_pred eEEEccccEECCeeEEEEEEEECCC-------CCcc-----eEEEEEcCCCCEEeEEE
Confidence 4577899999999999999988654 1111 11235889999988764
No 3
>PF14371 DUF4412: Domain of unknown function (DUF4412)
Probab=58.06 E-value=18 Score=27.11 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=15.5
Q ss_pred eeeeeecCceeeEEEee
Q 022693 103 IGEKKINGEDCFILKLC 119 (293)
Q Consensus 103 vGEk~i~gedCFiLkl~ 119 (293)
.|.|+|+|-+|-..++.
T Consensus 4 tGt~tI~G~~c~ky~v~ 20 (89)
T PF14371_consen 4 TGTKTIAGYKCEKYEVT 20 (89)
T ss_pred CCCEEECCEEeEEEEEE
Confidence 58899999999999987
No 4
>PRK02939 lipoprotein; Reviewed
Probab=46.42 E-value=50 Score=31.35 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=44.2
Q ss_pred CcEEEEEeeeeecceeeeecCCCCCcceeeEEEEee---CCCce----------------EEEEeeCC-ceeeeccCCce
Q 022693 2 GRVTMIASEFEKGNKVTRSRNSSKGAESGGFVLWQM---NPDMW----------------YVELALGD-SKVHAGCNGKL 61 (293)
Q Consensus 2 G~vrm~~se~~~~~~~v~~~~~~~~~e~GgFVlWQ~---~Pd~W----------------~~ELvVgG-~KV~AGsdGkv 61 (293)
|.||+..+-.--....|..+....-++.|||.--.+ .-+.+ -.++.++| |-+..=.||++
T Consensus 44 G~VK~~tqt~~ne~g~v~~~v~~~~~~eGCfdtl~~~~~~~n~~l~lvr~~n~lid~~t~~k~~~l~~kCql~~~~dg~l 123 (236)
T PRK02939 44 GPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDTLELLDLENNTGLALVLDANYYRDAETLEKRVRLQGKCQLAELPSAGV 123 (236)
T ss_pred CcceeeEEEEEcCCCcEEEEEEEEEcCCCceeeeEecccccccceEEEEecCeeeccccCeeEEEECCceEEEEccCCcE
Confidence 788888776654444444444445567888875543 22211 57899988 89999889999
Q ss_pred eeeec
Q 022693 62 VWRHT 66 (293)
Q Consensus 62 aWRhT 66 (293)
.|++-
T Consensus 124 ~~~~n 128 (236)
T PRK02939 124 SWETD 128 (236)
T ss_pred EEEEC
Confidence 99964
No 5
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=44.37 E-value=1.7e+02 Score=26.87 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=68.7
Q ss_pred eEEEEeeCCCceEEEEeeCCceeeeccCCceeeeecCCCCccccCCCCchh----hhhhc--CCC-----------cccc
Q 022693 31 GFVLWQMNPDMWYVELALGDSKVHAGCNGKLVWRHTPWLGAHAAKGPVRPL----RRALQ--GLD-----------PRTT 93 (293)
Q Consensus 31 gFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWRhTpw~g~HaakGp~RPL----RR~lQ--GLD-----------Pr~t 93 (293)
---+|-..||+..+++.=++.....=.|||...=..|-+..=|..--|-.| .++.+ |++ +...
T Consensus 42 ~~~v~v~RPdklr~~~~gd~~~~~~~yDGkt~Tl~~~~~n~Ya~~~aP~tid~~i~~l~~~~gi~~P~aDll~~d~~~~l 121 (214)
T PF09865_consen 42 SGTVTVQRPDKLRIDRRGDGADREFYYDGKTFTLYDPNQNVYAQADAPGTIDAAIDYLRDKYGIELPLADLLYSDPYDAL 121 (214)
T ss_pred EEEEEEeCCCeEEEEEEcCCcceEEEECCCEEEEEcCcCCeEEeccCCCCHHHHHHHHHHhhCCCccHHHhcccCchHHH
Confidence 335788999999999977779999999999999999998877765544443 22222 222 2223
Q ss_pred ccceeeeeeeeeeeecCceeeEEEeecCcc
Q 022693 94 ASMFINARCIGEKKINGEDCFILKLCADPS 123 (293)
Q Consensus 94 a~lF~~A~cvGEk~i~gedCFiLkl~~~~~ 123 (293)
..-+.+|.+||...|||..|.-|-...+.-
T Consensus 122 ~~~v~~~~~vG~~~V~G~~c~HlAfr~~~~ 151 (214)
T PF09865_consen 122 MDGVTSAKYVGQSVVGGVECDHLAFRNDDV 151 (214)
T ss_pred hhcceEEEEeeeEEECCEEeEEEEEecCCc
Confidence 344567899999999999999887765443
No 6
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=38.70 E-value=9.2 Score=34.41 Aligned_cols=31 Identities=42% Similarity=0.691 Sum_probs=23.6
Q ss_pred EEeecccccccccccCceeeecCCc-ceEEEEEecC
Q 022693 172 WETTINSFLDDYRPVEGIMIAHSGR-SIVTLFRFGD 206 (293)
Q Consensus 172 WETTieS~i~DYR~VdGi~IAH~G~-t~vtl~RfGe 206 (293)
-++.|.|.|.||| |.|+|+|- |..+++|-+.
T Consensus 55 ~~~kiQsli~dar----IVISHaG~GSIL~~~rl~k 86 (161)
T COG5017 55 KEEKIQSLIHDAR----IVISHAGEGSILLLLRLDK 86 (161)
T ss_pred hHHHHHHHhhcce----EEEeccCcchHHHHhhcCC
Confidence 4788999999999 89999986 3444555444
No 7
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=35.65 E-value=3.3e+02 Score=30.17 Aligned_cols=187 Identities=18% Similarity=0.204 Sum_probs=98.5
Q ss_pred cceeeEEEEeeCCCceEEEEeeCC--ceeeeccCCceeeeecCCCCccccCCCCchhhhhhcCCCccccccceeeeeeee
Q 022693 27 AESGGFVLWQMNPDMWYVELALGD--SKVHAGCNGKLVWRHTPWLGAHAAKGPVRPLRRALQGLDPRTTASMFINARCIG 104 (293)
Q Consensus 27 ~e~GgFVlWQ~~Pd~W~~ELvVgG--~KV~AGsdGkvaWRhTpw~g~HaakGp~RPLRR~lQGLDPr~ta~lF~~A~cvG 104 (293)
+.-|-+|+||+.-.+-.+==-+|+ --++--.||...==+.-=-+-|.-++|-=-+.+.+|||.|-+-..
T Consensus 270 G~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~--------- 340 (792)
T KOG1963|consen 270 GREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPST--------- 340 (792)
T ss_pred ccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccc---------
Confidence 355889999998665433222333 111111444433333333456777888888899999999874221
Q ss_pred eeeecCceeeEEEeecCccccccccCCCceEEEeeeeeccccccceeEEeeceeeeeeecC-CCCeeEEEeecccccccc
Q 022693 105 EKKINGEDCFILKLCADPSTLKARSEGPAEIIRHVLFGYFSQKTGLLVHLEDSHLTRIQNN-GGDAVYWETTINSFLDDY 183 (293)
Q Consensus 105 Ek~i~gedCFiLkl~~~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lEDS~LtRIqs~-~~~~vyWETTieS~i~DY 183 (293)
--+-.||..-++-|| |++-+|..--++-+.+-.. ....+| .+. +-||
T Consensus 341 ---k~~~~~l~t~~~idp------------------------r~~~~vln~~~g~vQ~ydl~td~~i~---~~~--v~~~ 388 (792)
T KOG1963|consen 341 ---KTRPQSLTTGVSIDP------------------------RTNSLVLNGHPGHVQFYDLYTDSTIY---KLQ--VCDE 388 (792)
T ss_pred ---cccccccceeEEEcC------------------------CCCceeecCCCceEEEEeccccceee---eEE--EEee
Confidence 233456666666665 1222222111111111001 111221 222 3345
Q ss_pred cccCceeeecCCcceEEEEEecCcccccccceeeeeeeeeeeeecCCCCCccccCCCcCcccCCCCcccccccCCccc
Q 022693 184 RPVEGIMIAHSGRSIVTLFRFGDTAMSHTRTRMEEAWAIDEVAFNVPGLSVDCFIPPAELRFDSVGETCEFTQGQRVR 261 (293)
Q Consensus 184 R~VdGi~IAH~G~t~vtl~RfGe~~~~h~~TrMEE~WtIeeV~FNV~GLS~DcFiPP~dl~~~~~~~~~~~~~~~~~~ 261 (293)
.+.+|=..-|-|.++|+.+|||.- -++. |+| ||++.|+.--.++-++.=-.+.+.-...-..+.|+++..+
T Consensus 389 n~~~~~~n~~v~itav~~~~~gs~-----maT~-E~~-~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~v 459 (792)
T KOG1963|consen 389 NYSDGDVNIQVGITAVARSRFGSW-----MATL-EAR-IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFV 459 (792)
T ss_pred cccCCcceeEEeeeeehhhccceE-----EEEe-eee-ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeE
Confidence 555554355778999999999752 1223 445 9999999777888776433333332233345567766654
No 8
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=34.91 E-value=29 Score=34.90 Aligned_cols=65 Identities=29% Similarity=0.440 Sum_probs=41.3
Q ss_pred CCcceeeEEEEeeC-------------------CCceEEEEeeCC-ceeeeccCCceeeeecCCCCccccCC--CCch--
Q 022693 25 KGAESGGFVLWQMN-------------------PDMWYVELALGD-SKVHAGCNGKLVWRHTPWLGAHAAKG--PVRP-- 80 (293)
Q Consensus 25 ~~~e~GgFVlWQ~~-------------------Pd~W~~ELvVgG-~KV~AGsdGkvaWRhTpw~g~HaakG--p~RP-- 80 (293)
..+..||||.|+|. ||+-++=|||++ +|-.+-.-|--.=..|+-+--|-.+- |.|=
T Consensus 159 CRSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~Ri~~ 238 (395)
T KOG2833|consen 159 CRSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQRIQQ 238 (395)
T ss_pred hhhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHHhHHHHHHHHhhhHHHHHH
Confidence 44688999999773 778899999966 66655555655555555555554443 3333
Q ss_pred hhhhhcCCC
Q 022693 81 LRRALQGLD 89 (293)
Q Consensus 81 LRR~lQGLD 89 (293)
+++++.-=|
T Consensus 239 m~eaI~~rD 247 (395)
T KOG2833|consen 239 MREAIRERD 247 (395)
T ss_pred HHHHHHhcC
Confidence 255554444
No 9
>KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair]
Probab=33.74 E-value=1.3 Score=49.70 Aligned_cols=81 Identities=28% Similarity=0.496 Sum_probs=48.8
Q ss_pred CceEEEeeeeeccccccceeE-EeeceeeeeeecCCCCeeEEEeeccccccc---ccccCceeeecCCcceEEEEEecCc
Q 022693 132 PAEIIRHVLFGYFSQKTGLLV-HLEDSHLTRIQNNGGDAVYWETTINSFLDD---YRPVEGIMIAHSGRSIVTLFRFGDT 207 (293)
Q Consensus 132 ~~EiirH~~~GYFSQrtGLLv-~lEDS~LtRIqs~~~~~vyWETTieS~i~D---YR~VdGi~IAH~G~t~vtl~RfGe~ 207 (293)
..||++|. ||||-+|.-+|= .|-. .|.|++.. +++.++-=+. |-..-|||| .||-++.+.|-=-.
T Consensus 758 GyEi~~~S-WGyl~eR~~~l~~di~~-~lsRv~~~-------~~~n~~d~~~ewg~tt~S~i~i--~GR~~lNiWRilR~ 826 (1488)
T KOG0968|consen 758 GYEIHNLS-WGYLIERAKLLGIDISR-DLSRVKCY-------EKTNESDDEREWGYTTISGINI--VGRHVLNIWRILRS 826 (1488)
T ss_pred eeeecccc-hHHHHHHHHHhcchHHH-HHhcCCCh-------hhhhhhhhhhhccceeeccccc--cchhhhhHHHHHhh
Confidence 47999998 999999965542 1111 24555543 2233322222 555668887 58877777775322
Q ss_pred ccccccceeeeeeeeeeeeecC
Q 022693 208 AMSHTRTRMEEAWAIDEVAFNV 229 (293)
Q Consensus 208 ~~~h~~TrMEE~WtIeeV~FNV 229 (293)
..+-+ ..|||.|.|||
T Consensus 827 eV~L~------nYtlEsv~~nV 842 (1488)
T KOG0968|consen 827 EVALT------NYTLESVVFNV 842 (1488)
T ss_pred hhhhh------hccHHHHHHHH
Confidence 22221 36899999997
No 10
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=29.57 E-value=46 Score=27.41 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=27.8
Q ss_pred ceeeEEEEeeCCCceEEEEeeCCceeeeccCCceeeeecCCCCccccCC--CCchhhhhhcCCCccc
Q 022693 28 ESGGFVLWQMNPDMWYVELALGDSKVHAGCNGKLVWRHTPWLGAHAAKG--PVRPLRRALQGLDPRT 92 (293)
Q Consensus 28 e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWRhTpw~g~HaakG--p~RPLRR~lQGLDPr~ 92 (293)
+.+||+||.|.-+. |+..| |....-.+.= -+.-|.-.|+|||++.
T Consensus 54 d~~G~~L~~KRLe~-----------------G~F~w---P~~~~~~~~~~lt~~qL~~Ll~Gi~~~~ 100 (107)
T PF05717_consen 54 DGDGFWLYYKRLER-----------------GRFKW---PRDSEEDGAVELTWEQLSWLLEGIDWRR 100 (107)
T ss_pred cCCceEEeeeeecC-----------------CEEec---CcccccCceEEECHHHHHHHHcCCCccc
Confidence 67999999998764 45555 3332211111 1222688899999875
No 11
>PF03888 MucB_RseB: MucB/RseB family; InterPro: IPR005588 The members of this family are regulators of the anti-sigma E protein RseD.; PDB: 2P4B_B 2V42_B 2V43_A 3M4W_A.
Probab=28.26 E-value=98 Score=29.01 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=32.9
Q ss_pred eeeeeeeeeeeecCceeeEEEeecCccccccccCCCceEEEeeeeeccccccceeEEeec
Q 022693 97 FINARCIGEKKINGEDCFILKLCADPSTLKARSEGPAEIIRHVLFGYFSQKTGLLVHLED 156 (293)
Q Consensus 97 F~~A~cvGEk~i~gedCFiLkl~~~~~~l~arS~~~~EiirH~~~GYFSQrtGLLv~lED 156 (293)
+=.....|..+|-|-+|-+|+|.+.-.- |....=|-++.||||+|.+-
T Consensus 94 ~Y~~~~~G~~RVAGr~a~~i~l~PkD~~------------RYgy~lWiD~etgLlLK~~~ 141 (285)
T PF03888_consen 94 HYQFVLGGRERVAGREAQVIRLEPKDDY------------RYGYRLWIDEETGLLLKSDL 141 (285)
T ss_dssp TEEEEEEEEEEETTEEEEEEEEEETTS-------------S-EEEEEEETTT--EEEEEE
T ss_pred cCceEECCCceECCCEEEEEEEEEcCCC------------ceEEEEEEEcCCCCEEeeee
Confidence 3456778999999999999999976551 11111235899999999764
No 12
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=27.73 E-value=1.2e+02 Score=25.95 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=24.0
Q ss_pred eeeecCCCCCcceeeEEEEeeCCCceEEEEeeCCceeeecc--CCceeeeec
Q 022693 17 VTRSRNSSKGAESGGFVLWQMNPDMWYVELALGDSKVHAGC--NGKLVWRHT 66 (293)
Q Consensus 17 ~v~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGs--dGkvaWRhT 66 (293)
++++|+- ..+|+| +| |+++-+|+.|...-. +-++.|+++
T Consensus 8 Vv~Ar~L---~~~~~~-----dP---YV~Ik~g~~k~kT~v~~~~nP~WnE~ 48 (127)
T cd08394 8 VKKAKLD---GAPDKF-----NT---YVTLKVQNVKSTTIAVRGSQPCWEQD 48 (127)
T ss_pred EEEeeCC---CCCCCC-----CC---eEEEEECCEEeEeeECCCCCCceeeE
Confidence 4555532 345655 57 999999997633222 127888875
No 13
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=25.43 E-value=32 Score=32.96 Aligned_cols=36 Identities=36% Similarity=0.662 Sum_probs=26.3
Q ss_pred cceeeEEEEeeCCCceEEEEeeCCceeeeccCCceeeeecCCCCccccCCCCchhhhhhcCCCccc
Q 022693 27 AESGGFVLWQMNPDMWYVELALGDSKVHAGCNGKLVWRHTPWLGAHAAKGPVRPLRRALQGLDPRT 92 (293)
Q Consensus 27 ~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWRhTpw~g~HaakGp~RPLRR~lQGLDPr~ 92 (293)
..+|||-+|-..-+..|-= --+||+||++.||+-+.
T Consensus 117 ~~K~~~~~~E~~~q~~~~l------------------------------~KV~P~~RA~k~L~v~A 152 (261)
T KOG0189|consen 117 ASKGGFSLWEDDHQEYDRL------------------------------RKVEPARRAYKGLNVKA 152 (261)
T ss_pred HhccchhheecCchhhhhh------------------------------hhccHHHHHhhccceee
Confidence 3679999997766554421 13799999999999664
No 14
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=24.40 E-value=4.2e+02 Score=23.41 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=30.6
Q ss_pred EEEEeeCCCceEEEEeeCCceeeeccCCceeeeecCCCC
Q 022693 32 FVLWQMNPDMWYVELALGDSKVHAGCNGKLVWRHTPWLG 70 (293)
Q Consensus 32 FVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWRhTpw~g 70 (293)
..+|.+.|++-..|+.=-... +-=|||+.+|=..|-..
T Consensus 61 g~~~~kkP~~~R~~~~~p~~~-~ivsdG~~v~iydp~~~ 98 (211)
T COG2834 61 GKLWIKRPNLFRWEYESPDEQ-VIVSDGKTVWIYDPDLE 98 (211)
T ss_pred EEEEEecCCeEEEEecCCCCc-EEEECCCEEEEECCCCc
Confidence 788999999999998763332 56689999999998764
No 15
>cd06911 VirB9_CagX_TrbG VirB9/CagX/TrbG, a component of the type IV secretion system. VirB9 is a component of the type IV secretion system, which is employed by pathogenic bacteria to export virulence proteins directly from the bacterial cytoplasm into the host cell. Unlike the more common type III secretion system, type IV systems evolved from the conjugative apparatus, which is used to transfer DNA between cells. VirB9 was initially identified as an essential virulence gene on the Agrobacterium tumefaciens Ti plasmid. In the pilin-like conjugative structure, VirB9 appears to form a stabilizing complex in the outer membrane, by interacting with the lipoprotein VirB7. The heterodimer has been shown to stabilize other components of the type IV system. This alignment model spans the C-terminal domain of VirB9. CagX is a component of the Helicobacter pylori cag PAI-encoded type IV secretion system. Some other members of this family are involved in conjugal transfer to T-DNA of plant cells
Probab=23.50 E-value=2.3e+02 Score=21.78 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=34.2
Q ss_pred eeceeeeeeecCC---CCeeEEEeec-ccccccccccCceeeecCCcceEEEEEecC
Q 022693 154 LEDSHLTRIQNNG---GDAVYWETTI-NSFLDDYRPVEGIMIAHSGRSIVTLFRFGD 206 (293)
Q Consensus 154 lEDS~LtRIqs~~---~~~vyWETTi-eS~i~DYR~VdGi~IAH~G~t~vtl~RfGe 206 (293)
+.|-..|-|+-+. -.++|....- ...+-.||-.++..|.|.-... .+.|.|.
T Consensus 22 ~DDG~~Tyi~f~~~~~~Pavf~~~~~g~~~lvn~~~~~~~~vV~~v~~~-~~Lr~G~ 77 (86)
T cd06911 22 FDDGRFTYFQFPPNAELPAIFVVDPDGKESLVNYRVEGNYIVVDGVAPK-LVLRLGD 77 (86)
T ss_pred EECCEEEEEECCCCCCCCcEEEECCCCCEEeceeEEECCEEEEeccCCc-EEEEeCC
Confidence 4566667776653 3489998774 4456669999999999984322 2335553
No 16
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=21.45 E-value=32 Score=27.98 Aligned_cols=36 Identities=25% Similarity=0.527 Sum_probs=25.2
Q ss_pred cceeeeeeee-------eeeeecCCCCCccccCCCcCcccCCCCccccccc
Q 022693 213 RTRMEEAWAI-------DEVAFNVPGLSVDCFIPPAELRFDSVGETCEFTQ 256 (293)
Q Consensus 213 ~TrMEE~WtI-------eeV~FNV~GLS~DcFiPP~dl~~~~~~~~~~~~~ 256 (293)
+-|+|-+|+| |++.++ |-||+|. -+-++..+.||++
T Consensus 44 rGR~ETtW~vLR~FgY~d~L~L~------d~~l~p~--l~v~~~~svELS~ 86 (89)
T PF08356_consen 44 RGRHETTWTVLRKFGYDDDLSLS------DDFLYPK--LDVPPDQSVELSP 86 (89)
T ss_pred hCcchHHHHHHHHcCCCCcceec------cccCCCC--ccCCCCCeeecCc
Confidence 4588999998 666665 7888887 3445555666653
No 17
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=21.40 E-value=1.3e+02 Score=24.40 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=30.1
Q ss_pred eEEEEeeCCCceEEEEeeCCcee-eeccCCceeeeecCC
Q 022693 31 GFVLWQMNPDMWYVELALGDSKV-HAGCNGKLVWRHTPW 68 (293)
Q Consensus 31 gFVlWQ~~Pd~W~~ELvVgG~KV-~AGsdGkvaWRhTpw 68 (293)
+..++-+.|+--.||++-+-.+. .--..|-|+||-.|=
T Consensus 99 ~~~~yf~DPdG~~iE~~~~~~~~~~~~~~~~~~~~~~~~ 137 (144)
T cd07239 99 NTFAYFLDPGGFVIEYTSELEQVDEDTTHGPVVWRPPPE 137 (144)
T ss_pred CEEEEEECCCCcEEEeccCceEECCCCCcCceecCCCCc
Confidence 45588999999999998886666 445668999998763
No 18
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=20.53 E-value=2.7e+02 Score=22.90 Aligned_cols=66 Identities=12% Similarity=0.285 Sum_probs=34.3
Q ss_pred eeeccCCceeeeecCCCCc-cccCCCCchhhhhhcCCCccccccceeeeeeeeeeeecCceeeEEEeecCccccccccCC
Q 022693 53 VHAGCNGKLVWRHTPWLGA-HAAKGPVRPLRRALQGLDPRTTASMFINARCIGEKKINGEDCFILKLCADPSTLKARSEG 131 (293)
Q Consensus 53 V~AGsdGkvaWRhTpw~g~-HaakGp~RPLRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFiLkl~~~~~~l~arS~~ 131 (293)
.+.|.||. +|-+||--.. .....-...|-..++ || +.++.+-- .++|+.||+|+-+ ...+.++.+.
T Consensus 21 aI~g~dGs-vWA~s~g~~f~~~~~~E~~~i~~~f~--~~---~~~~~~Gi-----~l~G~Ky~~~~~d--~~~i~~kk~~ 87 (129)
T smart00392 21 AIGGKDGS-VWAASAGGNFQKITPEEIAAIAALFN--SL---AAVFSNGL-----TLGGQKYMVIRAD--DRSIMGKKGA 87 (129)
T ss_pred EEEeCCCC-eeeccCCCCCCcCCHHHHHHHHHHcc--Cc---chhccCCe-----EECCeEEEEEEec--CcEEEeecCC
Confidence 34677886 5988885211 111122233333333 22 23333322 5678899999863 4555555544
Done!