BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022694
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 347 bits (890), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 166/290 (57%), Positives = 212/290 (73%), Gaps = 3/290 (1%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
+FT ++LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFS
Sbjct: 178 IFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFS 236
Query: 61 DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
D DY+G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA
Sbjct: 237 DLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 296
Query: 119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPN
Sbjct: 297 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 356
Query: 179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
S+I++TD+ +AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I
Sbjct: 357 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQI 416
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
+K+Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 417 RKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 347 bits (889), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 164/287 (57%), Positives = 209/287 (72%), Gaps = 2/287 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD D
Sbjct: 99 TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLD 158
Query: 64 YVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXG 121
Y+G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA
Sbjct: 159 YMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRD 218
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I
Sbjct: 219 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 278
Query: 182 YVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
++TD+ +AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+
Sbjct: 279 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 338
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 339 YTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 385
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 347 bits (889), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 164/287 (57%), Positives = 209/287 (72%), Gaps = 2/287 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD D
Sbjct: 87 TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLD 146
Query: 64 YVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXG 121
Y+G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA
Sbjct: 147 YMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRD 206
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I
Sbjct: 207 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 266
Query: 182 YVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
++TD+ +AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+
Sbjct: 267 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 326
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 327 YTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 373
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 347 bits (889), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 164/287 (57%), Positives = 209/287 (72%), Gaps = 2/287 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD D
Sbjct: 87 TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLD 146
Query: 64 YVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXG 121
Y+G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA
Sbjct: 147 YMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRD 206
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I
Sbjct: 207 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 266
Query: 182 YVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
++TD+ +AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+
Sbjct: 267 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 326
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 327 YTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 373
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 346 bits (888), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 164/287 (57%), Positives = 209/287 (72%), Gaps = 2/287 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD D
Sbjct: 87 TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLD 146
Query: 64 YVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXG 121
Y+G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA
Sbjct: 147 YMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRD 206
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I
Sbjct: 207 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 266
Query: 182 YVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
++TD+ +AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+
Sbjct: 267 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 326
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 327 YTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 373
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 333 bits (855), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 162/290 (55%), Positives = 206/290 (71%), Gaps = 3/290 (1%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
+FT ++LQD F VPLVIQ TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFS
Sbjct: 178 IFT-KWLQDVFNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFS 236
Query: 61 DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
D DY G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA
Sbjct: 237 DLDYXGXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 296
Query: 119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
+ ++CLIPCAIDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG K SASDPN
Sbjct: 297 FRDRTDIQCLIPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPN 356
Query: 179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
S+I++TD+ +AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I
Sbjct: 357 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQI 416
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
+K+Y +G LTGE+K+ L +VL L+ HQ R VTDE+V F R L
Sbjct: 417 RKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 466
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 333 bits (855), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 162/290 (55%), Positives = 206/290 (71%), Gaps = 3/290 (1%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
+FT ++LQD F VPLVIQ TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFS
Sbjct: 178 IFT-KWLQDVFNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFS 236
Query: 61 DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
D DY G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA
Sbjct: 237 DLDYXGXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 296
Query: 119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
+ ++CLIPCAIDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG K SASDPN
Sbjct: 297 FRDRTDIQCLIPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPN 356
Query: 179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
S+I++TD+ +AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I
Sbjct: 357 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQI 416
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
+K+Y +G LTGE+K+ L +VL L+ HQ R VTDE+V F R L
Sbjct: 417 RKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 466
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 333 bits (853), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 162/290 (55%), Positives = 206/290 (71%), Gaps = 3/290 (1%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
+FT ++LQD F VPLVIQ TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFS
Sbjct: 131 IFT-KWLQDVFNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFS 189
Query: 61 DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX 118
D DY G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA
Sbjct: 190 DLDYXGXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 249
Query: 119 XXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
+ ++CLIPCAIDQDPYFR TRDVAPRIGY KPAL+ S+FFPALQG K SASDPN
Sbjct: 250 FRDRTDIQCLIPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFPALQGAQTKXSASDPN 309
Query: 179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
S+I++TD+ +AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I
Sbjct: 310 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQI 369
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
+K+Y +G LTGE+K+ L +VL L+ HQ R VTDE+V F R L
Sbjct: 370 RKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFXTPRKL 419
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/283 (48%), Positives = 189/283 (66%), Gaps = 3/283 (1%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIF 59
+FT +YLQD FKVPLVIQLTDDEK ++K NL++EE+ A EN KDIIACGFD TFIF
Sbjct: 97 LFT-KYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIF 155
Query: 60 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 119
++ +Y+ Y +++++ K ++ +++ IFGF ++GK +FP VQA
Sbjct: 156 TNLEYIA-ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIF 214
Query: 120 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 179
G+ + CL+P AIDQDPYFRM RDVAPR+GY KP+ I S F P+LQG KMSAS NS
Sbjct: 215 GGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNS 274
Query: 180 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 239
+I+V D+ YAFSGGQ + E R+LGANL+VD+ +YL F +EDD +LE I
Sbjct: 275 SIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIG 334
Query: 240 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 282
K+Y +G ML+GE+K L + L +L + HQ R A+ D+++ F
Sbjct: 335 KKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKF 377
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet
pdb|3KT3|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT6|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT8|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
Length = 438
Score = 271 bits (692), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 138/286 (48%), Positives = 184/286 (64%), Gaps = 1/286 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
++LQ+ F VPLVI+LTDDEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD
Sbjct: 127 TKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDL 186
Query: 63 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGK 122
Y+GGAFY+ +V+V++ +T + +FGF D IGK F +Q
Sbjct: 187 QYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLP 246
Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
D CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI+
Sbjct: 247 DKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIF 306
Query: 183 VTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
+TD+ YAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y
Sbjct: 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKY 366
Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
+G +L+GE+K+ + L E V+ Q RA V +E +D FM L
Sbjct: 367 KSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl
Trna Synthetase
Length = 432
Score = 271 bits (692), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 138/286 (48%), Positives = 184/286 (64%), Gaps = 1/286 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
++LQ+ F VPLVI+LTDDEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD
Sbjct: 127 TKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDL 186
Query: 63 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGK 122
Y+GGAFY+ +V+V++ +T + +FGF D IGK F +Q
Sbjct: 187 QYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLP 246
Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
D CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI+
Sbjct: 247 DKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIF 306
Query: 183 VTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
+TD+ YAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y
Sbjct: 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKY 366
Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
+G +L+GE+K+ + L E V+ Q RA V +E +D FM L
Sbjct: 367 KSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
pdb|3I05|B Chain B, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
Length = 395
Score = 270 bits (690), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 139/287 (48%), Positives = 188/287 (65%), Gaps = 4/287 (1%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
MFT ++LQD+F+VPLVIQ+TDDEK ++N+ +E+ + + EN KDIIA GFD TFIF
Sbjct: 101 MFT-KWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFR 159
Query: 61 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXX-X 119
DFDY+G Y+ + K+ + T ++V G FGF ED+ G+ FP +QA
Sbjct: 160 DFDYMG-CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFP 218
Query: 120 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 179
++ CLIP AIDQDPYFR+TRD+APR+GY KPA+I S FFP L G GKMS+S +
Sbjct: 219 PSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSS-GT 277
Query: 180 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 239
A+ +TD+ +AFSGG + + H LGAN+EVD+P+++LSFFLEDD EL +K
Sbjct: 278 AVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVK 337
Query: 240 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 286
KEY G ++TGEVK+ L +T + + HQ R VTDE V F + R
Sbjct: 338 KEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTR 384
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
pdb|3TZE|B Chain B, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
Length = 406
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 176/281 (62%), Gaps = 4/281 (1%)
Query: 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
+Y+QDAFK+ LVIQ+TDDEK +WK++ +E++ REN KDI+ GFD T+IFS+ +
Sbjct: 127 KYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVE- 185
Query: 65 VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDH 124
F +N++K++K + N+ + +FGF +IG+V FP + G
Sbjct: 186 ASHHFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA-- 243
Query: 125 LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 184
CL+P A+DQDP+FR+ RD A +G KP+ I S P L+G KMSASDPNS+IY+
Sbjct: 244 -MCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLD 302
Query: 185 DSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 244
D+ YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE + Y
Sbjct: 303 DAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIK 362
Query: 245 GGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 285
G + + E+K++ V+ E V R+Q +R VTD+ + AF+ +
Sbjct: 363 GEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDI 403
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 194 bits (493), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 167/339 (49%), Gaps = 58/339 (17%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKDIIACGFDVTK------- 55
+YLQDAFK +VIQ+TDDEK + ++LS E REN KDIIACGFD K
Sbjct: 116 TKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINS 175
Query: 56 --------------------------TFIFSDFDYVGGAFY--KNMVKVAKC----VTYN 83
+F FS+ VG A + K M+ V + +
Sbjct: 176 QYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFT 235
Query: 84 KVVGIFGFTGEDHIGKVS--------------FPPVQAVXXXXXXXXXXXXGKDHLRCLI 129
+V G ED VS PV V CLI
Sbjct: 236 RVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAM----CLI 291
Query: 130 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXX 189
I+QDPYFR+ RD+APR+G+ K A + F P LQG KMSASDPNSAIY+TD+
Sbjct: 292 ASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQ 351
Query: 190 XXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLT 249
YAFSGG+++ E HR GA+L VD+ V+YL F++DDAELE +K +Y G +LT
Sbjct: 352 IKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLT 411
Query: 250 GEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
GEVK L +L L++ H R V M+++F + L
Sbjct: 412 GEVKATLIGILQGLIKEHAERRDKVDTTMIESFTVKKEL 450
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 159/284 (55%), Gaps = 15/284 (5%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIF 59
F ++LQ+ F V L IQ+TDDEK ++K NL+ ++++R A +N DIIA GFD KTFIF
Sbjct: 94 FFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIF 153
Query: 60 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXX 119
+ ++ Y+ + +AK + ++ +FGFT + IG + FP +Q
Sbjct: 154 QNSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFF------- 204
Query: 120 XGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 179
+ RCLIP AIDQDPY+R+ RD A +GY+K A + S F P+L +GKMSAS P +
Sbjct: 205 ---ERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPET 261
Query: 180 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHI 238
AIY+TDS + +GG+ +++ R+ G E + K+L FF EDD +L+
Sbjct: 262 AIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKER 321
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 282
G + GE K+ L + E ++ HQ R +++V+ F
Sbjct: 322 YYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKA-EKLVEKF 364
>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|B Chain B, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|C Chain C, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|D Chain D, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|E Chain E, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|F Chain F, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
Length = 386
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 146/280 (52%), Gaps = 4/280 (1%)
Query: 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
RYLQDAF + ++IQ+ DD K + + ++ E+ +++ + K I+A GF+ KTFI++D+ Y
Sbjct: 107 RYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQY 166
Query: 65 VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDH 124
G Y+ + V K YN V F F D+IGK++ P +
Sbjct: 167 FG-KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP-- 223
Query: 125 LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 184
RCL+ +I + + +A + + +P ++ P L G T SD NS I ++
Sbjct: 224 ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNS-ILLS 282
Query: 185 DSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 244
D+ AFSGG+ + E H+KLG ++D+ + L+ F D+A+++ ++++Y
Sbjct: 283 DNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSK 342
Query: 245 GGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMA 284
G +L+GE+K+ ++ + + + + + +T + A+++
Sbjct: 343 GELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYIS 382
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 124/272 (45%), Gaps = 23/272 (8%)
Query: 6 YLQ-DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFD 63
YLQ + FKV + + D E + + EE+ R+A E ++IA G D T + F
Sbjct: 96 YLQKNGFKV--FVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFY--FQ 151
Query: 64 YVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGK 122
G Y ++++ + VT ++ I+G E K+ QA G
Sbjct: 152 TNRGTPYFRLIQLFSGKVTAAEMEAIYG---ELTPAKMMASLTQAADILHVQLDEYG-GY 207
Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIG----YHKPALIESSFFPALQGETGKMSASDPN 178
H+ ++P DQDP+ R+TRD+A R+ +PA P L G KMS+S P+
Sbjct: 208 RHV--VVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGR--KMSSSRPD 263
Query: 179 SAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFF--LEDDAELE 236
S I++TD A +GG+ + E R+LG EV V ++ + + DD E++
Sbjct: 264 STIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEV-CSVYHMDLYHLMPDDGEVK 321
Query: 237 HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 268
HI G +L GE KQ + L + HQ
Sbjct: 322 HIYTSCRLGKILCGECKQIAWEKLERFLAEHQ 353
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 23/149 (15%)
Query: 40 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 95
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 96 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 155
G +++PP+ A ++P DQ + +TRD+A R ++K
Sbjct: 104 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAER--FNKRY 150
Query: 156 LIESSFFPALQGETGKMSASDPNSAIYVT 184
+L T KMS SDPN Y+T
Sbjct: 151 FTIPERIMSLVDPTKKMSKSDPNPKAYIT 179
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 23/149 (15%)
Query: 40 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 95
R+N + + +A G D T+ +F + A M++ C+ Y I
Sbjct: 55 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY-----IGELERMV 106
Query: 96 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 155
G +++PP+ A ++P DQ + +TRD+A R
Sbjct: 107 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFT 155
Query: 156 LIESSFFPALQGETGKMSASDPNSAIYVT 184
+ E+ +L T KMS SDPN Y+T
Sbjct: 156 IPEARRIMSLVDPTKKMSKSDPNPKAYIT 184
>pdb|2DLC|X Chain X, Crystal Structure Of The Ternary Complex Of Yeast
Tyrosyl-Trna Synthetase
Length = 394
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 132 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
+DQ F + + P +GY K A + + P L + GKMSASDPNS I
Sbjct: 189 GVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGL-AQGGKMSASDPNSKI 237
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 20/170 (11%)
Query: 15 LVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFYKNM 73
+++ L D + + + EE +A N K IA G D ++ F+ + + ++
Sbjct: 66 IIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDV 125
Query: 74 VKVAKCVTYNKV---VGIFGFTGED-HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRC-L 128
+K+A+ T N+ + ED + ++ +P +QA+ HL L
Sbjct: 126 LKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQALDIA------------HLGVDL 173
Query: 129 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
IDQ + R+ PR+GY P + + L G+ KMS+S N
Sbjct: 174 AVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDGQ--KMSSSKGN 221
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 26/157 (16%)
Query: 132 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETG---------------KMSASD 176
+DQ + RDVA ++G KP I + +LQG KMS S
Sbjct: 184 GMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSK 243
Query: 177 PNSAIYVTDSXXXXXXXXXXYAFSG----GQESVELHRKL-----GANLEVDIPVKYLSF 227
P +A++V DS G +E+ R + G L VD P KY
Sbjct: 244 PETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGP 303
Query: 228 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 264
+ E ++++Y G + ++K +A+ L E+V
Sbjct: 304 V--EYTSYEELERDYTDGRLHPLDLKNAVAESLIEVV 338
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 23/151 (15%)
Query: 40 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 95
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 55 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 108
Query: 96 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 155
G +++PP+ A ++P DQ + +TRD+A R A
Sbjct: 109 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFFTIPEA 157
Query: 156 LIES--SFFPALQGETGKMSASDPNSAIYVT 184
I + +L T KMS SDPN Y+T
Sbjct: 158 RIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 188
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 27/155 (17%)
Query: 40 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 95
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 96 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 155
G +++PP+ A ++P DQ + +TRD+A R
Sbjct: 104 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFT 152
Query: 156 LIESSF------FPALQGETGKMSASDPNSAIYVT 184
+ E+ +L T KMS SDPN Y+T
Sbjct: 153 IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 27/155 (17%)
Query: 40 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 95
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 96 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 155
G +++PP+ A ++P DQ + +TRD+A R
Sbjct: 104 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFT 152
Query: 156 LIESSF------FPALQGETGKMSASDPNSAIYVT 184
+ E+ +L T KMS SDPN Y+T
Sbjct: 153 IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 27/155 (17%)
Query: 40 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 95
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 96 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 155
G +++PP+ A ++P DQ + +TRD+A R
Sbjct: 104 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFT 152
Query: 156 LIESSF------FPALQGETGKMSASDPNSAIYVT 184
+ E+ +L T KMS SDPN Y+T
Sbjct: 153 IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 63/154 (40%), Gaps = 14/154 (9%)
Query: 127 CLIPCAIDQDPYFRMTRDVAPRI-GYHKPALIES----SFFPALQGETG--KMSASDPNS 179
L+P DQ P TR++ R + P L E S P L G G KMS S N
Sbjct: 164 TLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGN- 222
Query: 180 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDAELEHI 238
AI + DS G ++ N PV +L F D A ++ +
Sbjct: 223 AIALGDSADEVARKVMGMYTDPGHLRASDPGRVEGN-----PVFTFLDAFDPDPARVQAL 277
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 272
K +Y AGG+ +VK+ L VL ++ + RA
Sbjct: 278 KDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRA 311
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 63/154 (40%), Gaps = 14/154 (9%)
Query: 127 CLIPCAIDQDPYFRMTRDVAPRI-GYHKPALIES----SFFPALQGETG--KMSASDPNS 179
L+P DQ P TR++ R + P L E S P L G G KMS S N
Sbjct: 144 TLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGN- 202
Query: 180 AIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDAELEHI 238
AI + DS G ++ N PV +L F D A ++ +
Sbjct: 203 AIALGDSADEVARKVMGMYTDPGHLRASDPGRVEGN-----PVFTFLDAFDPDPARVQAL 257
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 272
K +Y AGG+ +VK+ L VL ++ + RA
Sbjct: 258 KDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRA 291
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 34/165 (20%)
Query: 40 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 95
R+N + + +A G D T+ +F + A M++ C+ Y + E
Sbjct: 55 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVYIGELERMTQFKEK 111
Query: 96 HIGK-------VSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPR 148
GK +++PP+ A ++P DQ + +TRD+A R
Sbjct: 112 SAGKEAVSAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAER 160
Query: 149 IG--YHKPALIESSFFP-------ALQGETGKMSASDPNSAIYVT 184
Y + I + P +L T KMS SDPN Y+T
Sbjct: 161 FNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 205
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 128 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 178
++P DQ + +TRD+A R Y + I + P +L T KMS SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPN 199
Query: 179 SAIYVT 184
Y+T
Sbjct: 200 PKAYIT 205
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 133 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDS 186
+DQ + R+ IG KP ++ L+ KMS SDP+SAI++ D+
Sbjct: 191 LDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDT 245
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
Query: 48 ACGFDVTKT-FIF-SDFDYVGGAFYKNMVKVAKCVTYNKV---VGIFGFTGEDHI--GKV 100
ACG ++ T FI+ S+F ++ + M+ +A+ T ++V I G D + ++
Sbjct: 110 ACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQI 169
Query: 101 SFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 160
+P +QA G D + IDQ + + A G P +
Sbjct: 170 FYPCMQAADVFELVPE----GID----ICQLGIDQRKVNMLAIEYANDRGLKIPISLSHH 221
Query: 161 FFPALQGETGKMSASDPNSAIYVTDS 186
+L G KMS SDP AI++ D+
Sbjct: 222 MLMSLSGPKKKMSKSDPQGAIFMDDT 247
>pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution.
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
Length = 814
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 35 SQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-----AFYKNMVKVAKCVT 81
+Q+L NAK+I A D +TF++ D D + A Y+ + +AK +T
Sbjct: 110 NQKLDETNAKNIEAIKLDSNRTFLWKDLDNLNNSAQLTATYRRLEDLAKQIT 161
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 34/175 (19%)
Query: 30 LSVEESQRLARENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY-NK 84
++V + + R+N +++ +A G D K +F + A M++ CV Y +
Sbjct: 79 ITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQ---CVAYIGE 135
Query: 85 VVGIFGFT----GEDHI--GKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPY 138
+ + F G + + G +++PP+ A G D L+P DQ +
Sbjct: 136 LERMTQFKDKSKGNEAVVSGLLTYPPLMAADILLY-------GTD----LVPPGEDQKQH 184
Query: 139 FRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPNSAIYVT 184
+TR++A R Y+ I P +L KMS SDPN Y+T
Sbjct: 185 LELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYIT 239
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 128 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 178
++P DQ + +TRD+A R Y + I + P +L T K S SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPN 199
Query: 179 SAIYVT 184
Y+T
Sbjct: 200 PKAYIT 205
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 128 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 178
++P DQ + +TRD+A R Y + I + P +L T K S SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPN 199
Query: 179 SAIYVT 184
Y+T
Sbjct: 200 PKAYIT 205
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 154 PALIESSFFPALQGETGKMSASDPNSAIYVTDS 186
P ++ P L KMS SD NSAI++ DS
Sbjct: 230 PVILSHGMLPGLLEGQEKMSKSDENSAIFMDDS 262
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 133 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDS 186
+DQ + R+ IG KP ++ L+ K S SDP+SAI+ D+
Sbjct: 191 LDQRKVNXLAREYCDLIGRKLKPVILSHHXLAGLKQGQAKXSKSDPDSAIFXEDT 245
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD----EMVDAF 282
G G ++T E+ + AK+L+E +ER V+ A VT+ E+V F
Sbjct: 129 GKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHF 172
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 26/161 (16%)
Query: 32 VEESQRLARENAKDIIACGFDVTKTFIFSDF---DYVGGAFYKNMV----KVAKCVTYNK 84
V + + R+ + +ACG D K+ IF ++ A +M+ ++ + TY +
Sbjct: 64 VSKLKEYTRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKE 123
Query: 85 VVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRD 144
+ + G + +P +QA +P DQ + +TR+
Sbjct: 124 IKSELNYKDLSTAGFLIYPVLQAADILIYKAEG-----------VPVGEDQVYHIELTRE 172
Query: 145 VAPRIGY------HKPALIESSFFPALQGETG-KMSASDPN 178
+A R Y +P I S P L G G KMS S N
Sbjct: 173 IARRFNYLYDEVFPEPEAILSR-VPKLPGTDGRKMSKSYGN 212
>pdb|2Y50|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum At 2.80 Angstrom Resolution
pdb|2Y6I|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum In Complex With
Isoamylphosphonyl-Gly-Pro-Ala At 3.25 Angstrom
Resolution
Length = 785
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 61 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT 92
DF+Y+ G Y + + K + +N++ G+F ++
Sbjct: 25 DFEYLNGLSYTELTNLIKNIKWNQINGLFNYS 56
>pdb|2Y3U|A Chain A, Crystal Structure Of Apo Collagenase G From Clostridium
Histolyticum At 2.55 Angstrom Resolution
Length = 785
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 61 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT 92
DF+Y+ G Y + + K + +N++ G+F ++
Sbjct: 25 DFEYLNGLSYTELTNLIKNIKWNQINGLFNYS 56
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 210 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH-- 267
R+LGA+ + +P Y+ E + + + AG GE+ A+V+TE+V
Sbjct: 25 RELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFD 84
Query: 268 ------QVARAAVTDEMVDAFMAVR 286
+ A VT ++ A +AVR
Sbjct: 85 KVPAAIEGCDAVVTTGLLPAAVAVR 109
>pdb|1PN3|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PN3|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PNV|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
pdb|1PNV|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
Length = 404
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 210 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH-- 267
R+LGA+ + +P Y+ E + + + AG GE+ A+V+TE+V
Sbjct: 25 RELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFD 84
Query: 268 ------QVARAAVTDEMVDAFMAVR 286
+ A VT ++ A +AVR
Sbjct: 85 KVPAAIEGCDAVVTTGLLPAAVAVR 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,957,126
Number of Sequences: 62578
Number of extensions: 296444
Number of successful extensions: 809
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 52
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)