BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022694
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1
SV=2
Length = 471
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/290 (62%), Positives = 229/290 (78%), Gaps = 3/290 (1%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
+FT ++LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFS
Sbjct: 178 IFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFS 236
Query: 61 DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHL 118
D DY+G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +
Sbjct: 237 DLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 296
Query: 119 FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
F + ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPN
Sbjct: 297 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 356
Query: 179 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
S+I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I
Sbjct: 357 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQI 416
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
+K+Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 417 RKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 466
>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2
SV=2
Length = 472
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/290 (62%), Positives = 229/290 (78%), Gaps = 3/290 (1%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
+FT ++LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFS
Sbjct: 179 IFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFS 237
Query: 61 DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHL 118
D DY+G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +
Sbjct: 238 DLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 297
Query: 119 FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
F + ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPN
Sbjct: 298 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 357
Query: 179 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
S+I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I
Sbjct: 358 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQI 417
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
+K+Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 418 RKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 467
>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus
GN=WARS PE=2 SV=3
Length = 475
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/287 (62%), Positives = 225/287 (78%), Gaps = 2/287 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++LQD F VPLV+Q++DDEK +WK+L++E+ ENAKDIIACGFDV KTFIFSD D
Sbjct: 184 TKWLQDVFDVPLVVQMSDDEKYLWKDLTLEQVYGYTLENAKDIIACGFDVNKTFIFSDLD 243
Query: 64 YVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
Y+G + FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F G
Sbjct: 244 YMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFHG 303
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I
Sbjct: 304 QADIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 363
Query: 182 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+
Sbjct: 364 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 423
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
Y +G MLTGE+K+ L VL LV HQ R VTDEMV FM R L
Sbjct: 424 YSSGAMLTGELKKELIDVLQPLVAEHQARRKEVTDEMVKEFMTPRQL 470
>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1
SV=3
Length = 476
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 178/287 (62%), Positives = 227/287 (79%), Gaps = 2/287 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD D
Sbjct: 185 TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAVENAKDIIACGFDINKTFIFSDLD 244
Query: 64 YVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
Y+G + FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F
Sbjct: 245 YMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRD 304
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I
Sbjct: 305 RTDVQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 364
Query: 182 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
++TD+AK IK K+NK+AFSGG+++VE HR+ G N +VD+ YL+FFLEDD +LE I+++
Sbjct: 365 FLTDTAKQIKTKVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRRD 424
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 425 YTSGAMLTGELKKELIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 471
>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars
PE=1 SV=2
Length = 481
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/287 (62%), Positives = 226/287 (78%), Gaps = 2/287 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++LQD F VPLVIQ++DDEK +WK+L++E++ ENAKDIIACGFDV KTFIFSD +
Sbjct: 184 TKWLQDVFDVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDVNKTFIFSDLE 243
Query: 64 YVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
Y+G + FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP VQA PSF +SFP +F
Sbjct: 244 YMGQSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRD 303
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
+ ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG KMSASDPNS+I
Sbjct: 304 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSI 363
Query: 182 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
++TD+AK IK+K+NK+AFSGG+++VE HR+ G N EVD+ YL+FFLEDD LE I+K+
Sbjct: 364 FLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIRKD 423
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
Y +G MLTGE+K+ L VL L+ HQ R AVT+E V FMA R L
Sbjct: 424 YTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQL 470
>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1
SV=2
Length = 481
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/287 (61%), Positives = 225/287 (78%), Gaps = 2/287 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++LQD F VPLVIQ++DDEK +WK+L++E++ ENAKDIIACGFD+ KTFIFSD +
Sbjct: 184 TKWLQDVFNVPLVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIFSDLE 243
Query: 64 YVGGA--FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
Y+G + FY+N+VK+ K VT+N+V GIFGFT D IGK+SFP VQA PSF +SFP +F
Sbjct: 244 YMGQSPGFYRNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRD 303
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
+ ++CLIPCAIDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG KMSASDPNS+I
Sbjct: 304 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSI 363
Query: 182 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
++TD+AK IK+K+NK+AFSGG+++VE HR+ G N EVD+ YL+FFLEDD LE I+K+
Sbjct: 364 FLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIRKD 423
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
Y +G MLTGE+K+ L VL L+ HQ R AVT+E V FM R L
Sbjct: 424 YTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMTPRQL 470
>sp|Q55DZ8|SYWC_DICDI Tryptophan--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=trpS PE=3 SV=1
Length = 400
Score = 345 bits (884), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 160/288 (55%), Positives = 212/288 (73%), Gaps = 5/288 (1%)
Query: 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
+YLQDAF VPLV+Q+T+DEK +WK++++EES + N KDIIA GFD+ KTFIFS+ +Y
Sbjct: 112 KYLQDAFNVPLVVQMTNDEKFLWKDMTLEESIKFTHNNVKDIIALGFDIQKTFIFSNLEY 171
Query: 65 VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD- 123
+ Y N++K+A+CV N++ IFGF D IGK +FPPVQA P FP SFPH+F D
Sbjct: 172 IH-HLYPNVLKIARCVNLNQIQNIFGFKESDAIGKFTFPPVQAAPCFPDSFPHIFPLNDP 230
Query: 124 ---HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
++RCLIPCAIDQDPYFRMTRD+A RIG+ KPALI S FFPALQG KMSASD NSA
Sbjct: 231 EIKNIRCLIPCAIDQDPYFRMTRDIAHRIGHQKPALIHSKFFPALQGHNTKMSASDTNSA 290
Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240
+Y++D+ +K+KI K+AFSGG + E K GA+L VDI +YL+F LEDD +L+ I
Sbjct: 291 VYLSDTPDQVKDKIKKHAFSGGGATKEEQEKNGADLSVDITYEYLTFMLEDDEQLKDIAH 350
Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
Y G M+TGE+KQ L ++ +++ RH+ ARA +TDE++ FM++R L
Sbjct: 351 RYSTGKMMTGEIKQILIDLMNKIIIRHKEARAKITDEVLSTFMSIRKL 398
>sp|Q09692|SYWC_SCHPO Tryptophan--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wrs1 PE=1 SV=1
Length = 395
Score = 333 bits (854), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 159/280 (56%), Positives = 208/280 (74%), Gaps = 1/280 (0%)
Query: 5 RYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++LQD F+VPLVIQLTDDEK ++K +S+E+ QR ARENAKDIIA GFD KTFIF +
Sbjct: 108 KWLQDVFQVPLVIQLTDDEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFMNST 167
Query: 64 YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 123
YVGGAFY+N+V++AKC+T N+ FGFT D IGK+ F +QA PSF SSFPH+F+G
Sbjct: 168 YVGGAFYQNVVRIAKCITANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSFPHIFNGAK 227
Query: 124 HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 183
+ CLIPCAIDQDPYFR+TRDV+ R+ + KPAL+ S FFPALQG KMSAS +SAI++
Sbjct: 228 DIPCLIPCAIDQDPYFRLTRDVSGRLKFKKPALLHSRFFPALQGPQSKMSASKDSSAIFM 287
Query: 184 TDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYG 243
TD+ IKNKIN++AFSGG ++E+HR+ G N +VD+ +YLSFFL+DD +L+ + Y
Sbjct: 288 TDTPNKIKNKINRHAFSGGGATIEIHREKGGNPDVDVAYQYLSFFLDDDEKLKQLYNTYK 347
Query: 244 AGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM 283
AG + TGE+K K+L + V Q AR+ V + +D FM
Sbjct: 348 AGTLSTGEMKGECIKLLQQFVSDFQAARSKVDEATLDMFM 387
>sp|Q12109|SYWC_YEAST Tryptophan--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=WRS1 PE=1 SV=1
Length = 432
Score = 304 bits (779), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 200/286 (69%), Gaps = 1/286 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
++LQ+ F VPLVI+LTDDEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD
Sbjct: 127 TKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDL 186
Query: 63 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 122
Y+GGAFY+ +V+V++ +T + +FGF D IGK F +Q +FPSSFP++
Sbjct: 187 QYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLP 246
Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
D CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI+
Sbjct: 247 DKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIF 306
Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
+TD+ K I+ KINKYAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y
Sbjct: 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKY 366
Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
+G +L+GE+K+ + L E V+ Q RA V +E +D FM L
Sbjct: 367 KSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>sp|O96771|SYW_ENCCU Tryptophan--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU11_0530 PE=1 SV=2
Length = 385
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 125/281 (44%), Positives = 189/281 (67%), Gaps = 4/281 (1%)
Query: 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
+Y+QDAFK+ LVIQ+TDDEK +WK++ +E++ REN KDI+A GFD T+IFS+ +
Sbjct: 106 KYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVALGFDPKLTYIFSNVE- 164
Query: 65 VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 124
F +N++K++K + N+ + +FGF +IG+V FP + P F SSF F GK
Sbjct: 165 ASHHFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFR--FIGKGA 222
Query: 125 LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 184
+ CL+P A+DQDP+FR+ RD A +G KP+ I S P L+G KMSASDPNS+IY+
Sbjct: 223 M-CLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLD 281
Query: 185 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 244
D+ I+ KI YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE + Y
Sbjct: 282 DAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIK 341
Query: 245 GGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 285
G + + E+K++ V+ E V R+Q +R VTD+ + AF+ +
Sbjct: 342 GEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDI 382
>sp|Q4JBG7|SYW_SULAC Tryptophan--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=trpS PE=3 SV=1
Length = 381
Score = 235 bits (599), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/282 (43%), Positives = 178/282 (63%), Gaps = 16/282 (5%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNL--SVEESQRLARENAKDIIACGFDVTKTFIFSD 61
++LQ+ FKV + I++TDDEK + +N+ ++++++ + EN DIIA GFD KTFIF D
Sbjct: 97 TKWLQEKFKVNVYIEITDDEKFL-RNVDYTLDQTKEWSYENILDIIAVGFDPNKTFIFQD 155
Query: 62 FDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
+Y+ Y VK+AK +T+N+V FG +IG + +P +Q VP+ +F
Sbjct: 156 TEYIKN-MYPLSVKIAKKLTFNEVRATFGLDTSSNIGIIFYPALQIVPT-------MFEK 207
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
+ RCLIP IDQDPY+R+ RD+A +GY K A I S F P L G GKMS+S P +AI
Sbjct: 208 R---RCLIPAGIDQDPYWRLQRDIAESLGYFKAAQIHSKFLPPLTGPEGKMSSSQPETAI 264
Query: 182 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKK 240
Y+TD K ++ KI KYAFSGGQ +VELHRK G N ++D+ ++L F E DD + I++
Sbjct: 265 YLTDDPKTVERKIMKYAFSGGQATVELHRKYGGNPDIDVAFQWLYMFFEPDDQRIRKIEE 324
Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 282
+Y +G MLTGE+KQ L L +E H+ R D +V+ F
Sbjct: 325 DYRSGAMLTGELKQILVDKLNAFLEEHREKREKAKD-LVNVF 365
>sp|Q976M1|SYW_SULTO Tryptophan--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=trpS PE=3 SV=2
Length = 381
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 184/285 (64%), Gaps = 17/285 (5%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFI 58
+FT ++LQD F V L I++TDDEK M +N +++++++ A +N DIIA GF+ KTFI
Sbjct: 95 IFT-KWLQDKFNVNLYIEITDDEKFM-RNPEYTLDQTRQWAYDNILDIIAVGFNPDKTFI 152
Query: 59 FSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHL 118
F D +Y+ Y +K+AK +T+++V FG +IG + +P +Q P+ +
Sbjct: 153 FQDTEYIRN-MYPIAIKIAKKLTFSEVRATFGLDTSSNIGIIWYPALQIAPT-------M 204
Query: 119 FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
F + RCLIP IDQDPY+R+ RD+A +GY+K A I S F P L G GKMS+S P
Sbjct: 205 FEKR---RCLIPAGIDQDPYWRLQRDIAESLGYYKAAQIHSKFLPPLTGPEGKMSSSQPE 261
Query: 179 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEH 237
+AIY+TD K ++ KI KYAFSGGQ ++ELHRK G N ++D+ ++L F E DD +++
Sbjct: 262 TAIYLTDDPKTVERKIMKYAFSGGQPTIELHRKYGGNPDIDVSFQWLYMFFEPDDNKIKK 321
Query: 238 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 282
I+++Y +G +LTGE+KQ L + L + +E H+ R ++V+ F
Sbjct: 322 IEEDYRSGALLTGELKQILIEKLNDFLEEHRQKREEAK-KLVNVF 365
>sp|Q97ZX0|SYW_SULSO Tryptophan--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=trpS PE=3 SV=2
Length = 380
Score = 227 bits (578), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 170/266 (63%), Gaps = 14/266 (5%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIF 59
+FT ++LQ+ F L I++TDDEK M ++++++ A +N DIIA GF+ KTFIF
Sbjct: 94 IFT-KWLQEKFNANLYIEITDDEKYMRNPEFTLDQTRSWAYDNILDIIAVGFNPDKTFIF 152
Query: 60 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 119
D +Y+ Y VK+AK +T+++V FG +IG + +P +Q P+ +F
Sbjct: 153 QDTEYIRN-MYPITVKIAKKLTFSEVRATFGLDASSNIGLIFYPALQIAPT-------MF 204
Query: 120 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 179
K RCLIP IDQDPY+R+ RD+A +GY+K A I S F P L G GKMS+S+P +
Sbjct: 205 EKK---RCLIPAGIDQDPYWRLQRDIAESLGYYKAAQIHSKFLPPLTGPEGKMSSSNPET 261
Query: 180 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHI 238
AIY+ D K ++ KI KYAFSGGQ ++ELHRK G N E+D+P ++L +F EDD ++ I
Sbjct: 262 AIYLVDDPKTVERKIMKYAFSGGQPTIELHRKYGGNPEIDVPFQWLYYFFEEDDNRIKEI 321
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELV 264
++EY +G MLTGE+KQ L L +
Sbjct: 322 EEEYRSGKMLTGELKQILIDKLNNFL 347
>sp|Q8U453|SYW_PYRFU Tryptophan--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=trpS PE=3 SV=1
Length = 385
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 169/284 (59%), Gaps = 15/284 (5%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIF 59
F ++LQ+ F V L IQ+TDDEK ++K NL+ E+++ A +N DIIA GFD KTFIF
Sbjct: 94 FFATKWLQEKFDVNLYIQITDDEKFLFKENLTFEDTKYWAYQNILDIIAVGFDPDKTFIF 153
Query: 60 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 119
+ ++ Y+ + +AK + ++ +FGFT + IG + FP +QA P+F F
Sbjct: 154 QNSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQAAPTF-------F 204
Query: 120 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 179
K RCLIP AIDQDPY+R+ RD A +GY+K A + S FFP L G GKMSAS P +
Sbjct: 205 EKK---RCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFFPPLTGLEGKMSASKPET 261
Query: 180 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHI 238
AIY+TD+ + KI K+A +GGQ +++ R+ G N E + K+L F E DD +L
Sbjct: 262 AIYLTDNPEEAGKKIWKFALTGGQPTLKEQREKGGNPEKCVVFKWLEIFFEPDDKKLMER 321
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 282
G +L GE K+ L + + E ++ HQ R +++V+ F
Sbjct: 322 YYACKNGELLCGECKRYLIQRVQEFLKEHQEKRKKA-EKLVEKF 364
>sp|B6YUH1|SYW_THEON Tryptophan--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=trpS PE=3 SV=1
Length = 384
Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 161/272 (59%), Gaps = 14/272 (5%)
Query: 2 FTNRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFS 60
F ++LQ+ F V L IQ+TDDEK ++K+ L+ E+++ A +N DIIA GFD +TFIF
Sbjct: 94 FATKWLQEKFGVNLYIQITDDEKFLFKDKLTFEDTKYWAYQNILDIIAVGFDPDRTFIFQ 153
Query: 61 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS 120
D ++ Y+ + +AK + ++ +FGFT + IG + +P +QA P+F F
Sbjct: 154 DSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFYPAIQAAPTF-------FE 204
Query: 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
K RCLIP AIDQDPY+R+ RD A +GY+K A I S F P L G GKMSAS P +A
Sbjct: 205 KK---RCLIPAAIDQDPYWRLQRDFAESLGYYKTAAIHSKFVPGLMGLEGKMSASKPETA 261
Query: 181 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIK 239
IY+TD + + KI KYA +GG+ + + R+ G E + K+L FF EDD +L
Sbjct: 262 IYLTDDPEEVGRKIWKYALTGGRATAKEQREKGGEPEKCVVFKWLEIFFEEDDKKLMERY 321
Query: 240 KEYGAGGMLTGEVKQRLAKVLTELVERHQVAR 271
G +L G+ K+ L K + E ++ HQ R
Sbjct: 322 HACKNGELLCGQCKRYLIKKVQEFLKEHQKKR 353
>sp|Q9UY11|SYW_PYRAB Tryptophan--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=trpS PE=3 SV=1
Length = 385
Score = 200 bits (509), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 164/280 (58%), Gaps = 14/280 (5%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIF 59
F ++LQ+ F V L IQ+TDDEK ++K NL+ E+++ A EN DIIA GFD KTFIF
Sbjct: 94 FFATKWLQEKFGVNLYIQITDDEKFLFKENLTFEDTKHWAYENILDIIAVGFDPDKTFIF 153
Query: 60 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 119
+ ++ Y+ + +AK + ++ +FGFT + IG + FP +Q P+F
Sbjct: 154 QNSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTF-------- 203
Query: 120 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 179
+ RCLIP AIDQDPY+R+ RD A +GY+K A I S F P+L +GKMSAS P +
Sbjct: 204 --FEKRRCLIPAAIDQDPYWRLQRDFAESLGYYKTAAIHSKFVPSLTSLSGKMSASKPET 261
Query: 180 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHI 238
AIY+TDS + ++ K+ K+A +GG+ +++ R+ G E + K+L FF EDD +L+
Sbjct: 262 AIYLTDSPEDVEKKVWKFALTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKER 321
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEM 278
G + GE K+ L + E ++ HQ R ++
Sbjct: 322 YYACKNGELTCGECKRYLISKIQEFLKEHQKRRKKAEKQI 361
>sp|O59584|SYW_PYRHO Tryptophan--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=trpS PE=1 SV=2
Length = 386
Score = 199 bits (505), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 169/284 (59%), Gaps = 15/284 (5%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIF 59
F ++LQ+ F V L IQ+TDDEK ++K NL+ ++++R A +N DIIA GFD KTFIF
Sbjct: 94 FFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIF 153
Query: 60 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 119
+ ++ Y+ + +AK + ++ +FGFT + IG + FP +Q P+F F
Sbjct: 154 QNSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTF-------F 204
Query: 120 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 179
K RCLIP AIDQDPY+R+ RD A +GY+K A + S F P+L +GKMSAS P +
Sbjct: 205 ERK---RCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPET 261
Query: 180 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHI 238
AIY+TDS + ++ K+ K+ +GG+ +++ R+ G E + K+L FF EDD +L+
Sbjct: 262 AIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKER 321
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 282
G + GE K+ L + E ++ HQ R +++V+ F
Sbjct: 322 YYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKA-EKLVEKF 364
>sp|Q5JEP3|SYW_PYRKO Tryptophan--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=trpS PE=3 SV=1
Length = 384
Score = 197 bits (500), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 159/273 (58%), Gaps = 14/273 (5%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIF 59
F ++LQ+ F V L IQ+TDDEK ++K LS E+++R A EN DIIA GFD KTFIF
Sbjct: 93 FFATKWLQENFDVNLYIQITDDEKFLFKEKLSFEDTKRWAYENILDIIAVGFDPDKTFIF 152
Query: 60 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 119
+ ++ Y+ + +AK + ++ +FGF + IG + +P +QA P+F F
Sbjct: 153 QNSEFT--KIYEMALPIAKKINFSMARAVFGFNEQSKIGMIFYPAIQAAPTF-------F 203
Query: 120 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 179
K RCLIP AIDQDPY+R+ RD A +GY+K A I S F P L GKMSAS P +
Sbjct: 204 EKK---RCLIPAAIDQDPYWRLQRDFAESLGYYKTAAIHSKFVPGLTSLEGKMSASKPET 260
Query: 180 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHI 238
A+Y+TD + KI K+A +GGQ +++ R+ G N E + K+ F E DD +L
Sbjct: 261 AVYLTDDPEEAGKKIWKFALTGGQPTLKEQREKGGNPEKCVVFKWFEIFFEPDDEKLMER 320
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVAR 271
+ AG + G+ K+ L + + + ++ HQ R
Sbjct: 321 YRACKAGELTCGQCKRELIERVQKFLKEHQKKR 353
>sp|C6A032|SYW_THESM Tryptophan--tRNA ligase OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=trpS PE=3 SV=1
Length = 384
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 161/282 (57%), Gaps = 18/282 (6%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIF 59
F ++LQ+ F V L +Q+TDDEK ++K L+ E ++R A EN DIIA GFD KTFIF
Sbjct: 93 FFATKWLQENFGVNLYVQITDDEKFLFKPQLTFEGTKRWAYENILDIIAVGFDPDKTFIF 152
Query: 60 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLF 119
D ++ Y+ + +AK VTY+ +FGF + IG + FP +QA P+F F
Sbjct: 153 QDSEFT--KIYEMAIPIAKKVTYSMAKAVFGFNEQSKIGMIFFPAIQAAPTF-------F 203
Query: 120 SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 179
K R LIP AIDQDPY+R+ RD A +GY+K A + S F P L G GKMSAS P +
Sbjct: 204 EEK---RSLIPAAIDQDPYWRIQRDFAESLGYYKTAALHSKFVPGLMGLGGKMSASKPET 260
Query: 180 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 239
AIY+TD + KI KYA +GG+ + + R+LG + + K+L F E D + +
Sbjct: 261 AIYLTDDPEEAGKKIWKYALTGGRATAKEQRELGGEPDKCVVFKWLEIFFEPDE--KKLL 318
Query: 240 KEYGA---GGMLTGEVKQRLAKVLTELVERHQVARAAVTDEM 278
+ Y A G +L G+ K+ L + + ++ HQ R E+
Sbjct: 319 ERYIACKNGEILCGQCKRYLIEKVQNFLKEHQEKREKAKKEI 360
>sp|A3MX72|SYW_PYRCJ Tryptophan--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=trpS PE=3 SV=1
Length = 374
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/279 (41%), Positives = 159/279 (56%), Gaps = 9/279 (3%)
Query: 5 RYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++L D F V + Q+TDDEK + +EE+ + A ENA D+IA GF K + D
Sbjct: 97 KWLSDKFGVEVYFQMTDDEKFYDDPEMRLEEATKWAYENALDVIALGFTPDKLHLIIDTK 156
Query: 64 YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 123
+ Y KVAK +T+N V FGFT +IG + +P +Q +F P G+
Sbjct: 157 DIK-PLYPIAAKVAKKLTWNTVKATFGFTDSTNIGLIFYPSLQIAVAF---LPTELHGRP 212
Query: 124 HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 183
LIPCAIDQDPYFR+ RD+A +GY KPA + S F AL GE+ KMSAS+PNSAIY
Sbjct: 213 -TPVLIPCAIDQDPYFRLARDIAESLGYPKPATLYSKFIMALTGES-KMSASNPNSAIYT 270
Query: 184 TDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYG 243
D K I+ KI A++GG+ + E R+LG N +V Y F DDA +E I
Sbjct: 271 IDDEKTIRRKIAN-AYTGGRPTAEEQRRLGGNPDVCPVYHYHMLFDPDDASVEKIYHSCK 329
Query: 244 AGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 282
+G +L GE KQ L + + + V++HQ AR D+ VDA+
Sbjct: 330 SGALLCGECKQMLYEKIRKFVKQHQEAREKARDK-VDAY 367
>sp|A4WL99|SYW_PYRAR Tryptophan--tRNA ligase OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=trpS PE=3 SV=1
Length = 374
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 156/278 (56%), Gaps = 14/278 (5%)
Query: 5 RYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++ D F V + Q+TDDEK + +EE+ A ENA D+IA GF K + D
Sbjct: 97 KWFSDKFGVEVYFQMTDDEKFFDDPEMKLEEATGWAYENALDVIALGFGPDKLHLIVDTK 156
Query: 64 YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ-AVPSFPSSFPHLFSGK 122
+ Y V+VAK +T+N V FGFT +IG + +P +Q AV P+ K
Sbjct: 157 DIA-PLYPIAVRVAKKLTWNTVKATFGFTDSSNIGLIFYPSLQIAVAFLPTEL-----KK 210
Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
+ LIPCAIDQDPYFR+ RD+A + Y KP + S F AL GE+ KMSAS+P+SAIY
Sbjct: 211 EPTPVLIPCAIDQDPYFRLARDIADSLSYPKPTTLYSKFIMALTGES-KMSASNPDSAIY 269
Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
D K +K+KI AF+GG+ + E RK G N ++ Y F DDA +E I+++
Sbjct: 270 TMDDDKTVKHKILN-AFTGGRPTAEEQRKYGGNPDICPVFHYHMLFDPDDASVEKIRQDC 328
Query: 243 GAGGMLTGEVK----QRLAKVLTELVERHQVARAAVTD 276
+G +L GE K ++++K L E ER + AR V +
Sbjct: 329 KSGALLCGECKLKLHEKISKFLKEHRERREKARGKVDE 366
>sp|Q8ZTU5|SYW_PYRAE Tryptophan--tRNA ligase OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=trpS
PE=3 SV=1
Length = 375
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 161/284 (56%), Gaps = 10/284 (3%)
Query: 5 RYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++ D F + + Q+TDDEK + +EE+ A ENA D+IA GF + + D
Sbjct: 97 KWFSDKFGLEVYFQITDDEKFYDDPEMKLEEATNWAYENALDVIALGFSPERLHLIIDTK 156
Query: 64 YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ-AVPSFPSSFPHLFSGK 122
+ Y V+VAK +T+N V FGFT +IG + +P +Q AV P+ +
Sbjct: 157 DIK-PLYPIAVRVAKKLTWNTVKATFGFTDSTNIGLIFYPSLQIAVAFLPTEL-----RR 210
Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
+ LIPCAIDQDPYFR+ RD+A +GY KP+ + S F AL GE+ KMSAS+P+SAIY
Sbjct: 211 EATPVLIPCAIDQDPYFRLARDIADALGYPKPSTLYSKFIMALTGES-KMSASNPDSAIY 269
Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
D K ++ K+ AF+GG+ + E RK G N EV Y F DDA +E I+++
Sbjct: 270 TLDDEKTVRRKVMN-AFTGGRPTAEEQRKYGGNPEVCPVFHYHMLFDPDDASVEKIRQDC 328
Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 286
+G +L GE K +L + +T+ ++ H+ R ++ + ++V+
Sbjct: 329 KSGALLCGECKLKLHEKITKFLKEHRERREKARGKVDEYRLSVK 372
>sp|Q9HN66|SYW2_HALSA Tryptophan--tRNA ligase 2 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS2 PE=3 SV=1
Length = 380
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 154/283 (54%), Gaps = 15/283 (5%)
Query: 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
R LQD F + + L+DDEK +K+ + E+ R N +D++A GFD T I D
Sbjct: 90 RRLQDEFGARVYVPLSDDEKYWFKDQTPAETGDYLRANLRDLLAVGFDPELTRIVVDT-R 148
Query: 65 VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 124
Y A V + + ++G D++G+ +P VQ P L G+
Sbjct: 149 DADVLYPLATAFAGDVRHATLQNVYG--EPDNVGQAFYPAVQTAHLL---LPQLVHGEHE 203
Query: 125 LRCLIPCAIDQDPYFRMTRDVAPRIGY--HKPALIESSFFPALQGETGKMSASDPNSAIY 182
L+P A+DQDP+ R++RDVA + Y KP + F P+L G GKMS+S +I
Sbjct: 204 --TLVPIAVDQDPHVRVSRDVAAKARYPVGKPGALLMQFLPSLAG-PGKMSSS-AGVSIR 259
Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKE 241
+TDS ++ K+ +A++GG+ SVE HR G D+P +YLS F E DDAEL I++E
Sbjct: 260 LTDSPDTVREKVRTHAYTGGRASVEEHRAKGGVPAEDVPFQYLSAFFEPDDAELARIERE 319
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD--EMVDAF 282
Y AG +L+GE+K A +TE + HQ RAA+ D E +DAF
Sbjct: 320 YRAGDLLSGELKDLAADRITEFLAAHQRRRAALGDVTEALDAF 362
>sp|Q8TYF7|SYW_METKA Tryptophan--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=trpS PE=3 SV=1
Length = 374
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 137/282 (48%), Gaps = 13/282 (4%)
Query: 6 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDY 64
+ Q V + + + D E +N+ ++ + R+A E + A G D+
Sbjct: 88 FYQQEMDVKVYVPIADLEAHHARNMDLDRAHRIAVEEYVLNYAALGLDLDPDRCEIYLQS 147
Query: 65 VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 124
+ + +A +T+N V +GFTGE ++G P VQA P G
Sbjct: 148 ERKTVQRMALLLAGRLTWNTVKNTYGFTGETNMGHAFAPIVQAADIL---HPQEIEGPH- 203
Query: 125 LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 184
R L+P +DQDP+ R+TRD+A + KPA F L G GKMS+S PN+AI++T
Sbjct: 204 -RVLVPVGVDQDPHLRLTRDIAEKEDLIKPASTYHRFMTGLTG--GKMSSSKPNTAIFLT 260
Query: 185 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED----DAELEHIKK 240
D + K K+ A +GG ++E HR+ G N + + + + + L D D +L I+K
Sbjct: 261 DDPETAKEKVWN-AKTGGGATLEEHREHGGNPDECVVYELMVYHLADRIGGDEKLREIRK 319
Query: 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 282
+ G ++ GE K+ + + L E++E + R V DE+ D
Sbjct: 320 KCREGDIICGECKRMVGEALAEILEELERRREDVRDELPDLL 361
>sp|Q58810|SYW_METJA Tryptophan--tRNA ligase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=trpS PE=3 SV=1
Length = 370
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 134/265 (50%), Gaps = 17/265 (6%)
Query: 17 IQLTDDEKCMWKNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK 75
I + D E +N+S E ++ LA E + IA G D K ++ Y K++
Sbjct: 102 IPIADLEAYWARNMSFETTKELALNEYITNYIALGLDPEKINVYLQSKYQK---VKDLAL 158
Query: 76 V-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAID 134
+ +K ++++ I+GF GE +IG V P VQ S + ++P ID
Sbjct: 159 ILSKRTNWSEMKAIYGFKGETNIGHVFAPIVQVADILHPQLDENLSPEP-KPVVVPVGID 217
Query: 135 QDPYFRMTRDVAPRIGYHK---PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 191
QDP+ R+TRD+A R K P+ F L G GKMS+S P +AI++TD K +K
Sbjct: 218 QDPHIRLTRDIANRAKEFKFIPPSSTYHRFMTGLLG--GKMSSSKPETAIFLTDDEKTVK 275
Query: 192 NKINKYAFSGGQESVELHRKLGANLEVDIPVK-YLSFFLEDDAELEHIKKEYGAGGMLTG 250
KI A +GG+E++E H+K G E + + +L + DD EL I ++ +G + G
Sbjct: 276 KKIFS-AKTGGRETLEEHKKYGGVPEECVVYELFLYHLILDDKELAEIYQKCRSGELTCG 334
Query: 251 EVK----QRLAKVLTELVERHQVAR 271
+ K +R+ + L +L E+ + A+
Sbjct: 335 KCKKMAYERVVEFLKDLKEKREQAK 359
>sp|O26352|SYW_METTH Tryptophan--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=trpS PE=3 SV=1
Length = 364
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 127/279 (45%), Gaps = 32/279 (11%)
Query: 9 DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-RENAKDIIACGFDVTK----------TF 57
D + I + D E + + E+S+R+A E IA G D+ K
Sbjct: 89 DRMGAEIFIPIADMEAYSARGVDFEDSRRIAIEEYIAGYIALGLDLEKDNIHVYLQSENL 148
Query: 58 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPH 117
+ D YV +A V +N++ I+GFTG + + P +Q
Sbjct: 149 MVEDLAYV----------LAGKVNFNELRAIYGFTGSTSMAHMYAPIIQVSDILHPQLDE 198
Query: 118 LFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI----GYHKPALIESSFFPALQGETGKMS 173
L + ++P DQDP+ R+TRD+A R G+ P+ F L G GKMS
Sbjct: 199 LGGPRP---VIVPVGPDQDPHIRLTRDIAARFRDRYGFILPSSTYHRFMGGLTG--GKMS 253
Query: 174 ASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DD 232
++ P SAI+++D+ + + KI + A +GG+E+++ R+LG E I + L + + D
Sbjct: 254 SNRPKSAIFLSDTPEEAEAKI-RNAKTGGRETLKEQRELGGVPEECIIYETLLYHMSGSD 312
Query: 233 AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVAR 271
+ LE I + G ++ GE K A+ + + E V R
Sbjct: 313 SRLEEIYESCRNGTLMCGECKNNTAEFIRKFFEELSVKR 351
>sp|Q9Y924|SYW_AERPE Tryptophan--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=trpS PE=1
SV=2
Length = 372
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 132/278 (47%), Gaps = 35/278 (12%)
Query: 6 YLQ-DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFD 63
YLQ + FKV + + D E + + EE+ R+A E ++IA G D T + F
Sbjct: 96 YLQKNGFKV--FVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFY--FQ 151
Query: 64 YVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHL---- 118
G Y ++++ + VT ++ I+G P + + S + L
Sbjct: 152 TNRGTPYFRLIQLFSGKVTAAEMEAIYG----------ELTPAKMMASLTQAADILHVQL 201
Query: 119 --FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----YHKPALIESSFFPALQGETGKM 172
+ G H+ ++P DQDP+ R+TRD+A R+ +PA P L G KM
Sbjct: 202 DEYGGYRHV--VVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGR--KM 257
Query: 173 SASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF--LE 230
S+S P+S I++TD + +NK+ + A +GG+ + E R+LG EV V ++ + +
Sbjct: 258 SSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEV-CSVYHMDLYHLMP 315
Query: 231 DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 268
DD E++HI G +L GE KQ + L + HQ
Sbjct: 316 DDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQ 353
>sp|A2BLD4|SYW_HYPBU Tryptophan--tRNA ligase OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=trpS PE=3 SV=1
Length = 373
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 117/246 (47%), Gaps = 16/246 (6%)
Query: 41 ENAKDIIACGFDVTK-TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK 99
E ++IA G + K T I+ +Y +Y+ + ++ VT ++ I+G + K
Sbjct: 131 EYVANLIALGLEKNKHTHIYFQTNY-ETPYYRLIQMFSRRVTLEEMSAIYG---DLEPSK 186
Query: 100 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR----IGYHKPA 155
+ QA + F G ++ ++P DQDP+ R+TRD+A R +G +PA
Sbjct: 187 IMAALTQAADILHPQLDY-FGGFKYV--VVPVGADQDPHIRLTRDIAARFENELGLRRPA 243
Query: 156 LIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGAN 215
F L G KMS+S P I++TD K+ + A +GG+ +VE R+LG
Sbjct: 244 STYHRFQTGLDG--NKMSSSRPEYTIFLTDPVDIAVRKLKR-ALTGGRATVEEQRRLGGE 300
Query: 216 LE-VDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 274
E + YL +EDD +L I ++ +L G K+ A++L + +E HQ
Sbjct: 301 PEKCTVYEFYLYHLIEDDTQLRKIYEDCRGSRLLCGPDKEYAAELLAKFLEEHQRRLERA 360
Query: 275 TDEMVD 280
D +++
Sbjct: 361 RDRVLE 366
>sp|Q8TUA1|SYW_METAC Tryptophan--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=trpS PE=3 SV=1
Length = 437
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 140 RMTRDVAPRIGYHK---PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 196
++ R+V G + PA F LQG GKMS+S P S I +TDS K K+ K
Sbjct: 289 KLVREVTVEFGGYAFIPPASTYHRFMSGLQG--GKMSSSIPESQIALTDSPKEGAKKV-K 345
Query: 197 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQR 255
A +GG ++E +KLG E + + F L D EL IK+E +G + G KQ
Sbjct: 346 RAKTGGCVTLEEQKKLGGKPEECSVFELMLFHLIASDEELLEIKQECISGTRMCGSCKQL 405
Query: 256 LAKVLTELVERHQVARAAVTDEM 278
A+ + E ++ HQ R + +
Sbjct: 406 AAEKMQEFLKDHQEKRELAREHL 428
>sp|Q8PWV5|SYW_METMA Tryptophan--tRNA ligase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=trpS PE=3 SV=2
Length = 491
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 154 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLG 213
PA F LQG GKMS+S P+S I +TD K K+ K A +GG ++E +KLG
Sbjct: 360 PASTYHRFMSGLQG--GKMSSSIPDSHIALTDDPKEGAKKV-KRAKTGGCITLEEQKKLG 416
Query: 214 ANL-EVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 272
E + L +EDD EL I++E G + G KQ A+ + E ++ HQ R
Sbjct: 417 GKPDECSVFELMLFHLIEDDEELLEIREECIYGTRMCGSCKQLAAEKMQEFLKDHQEKRE 476
Query: 273 AVTDEM 278
+++
Sbjct: 477 LAREQL 482
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 46 IIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFGFTGEDHIGKVSFPP 104
+IA GF F G K++ ++ V ++++ I+GF+GE + +
Sbjct: 131 LIALGFKPEGLIYFQS----GCGSVKDLAFELGAKVNFSELSAIYGFSGETSLSHMLSVA 186
Query: 105 VQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 149
QA K ++P DQDP+ R+TR +A ++
Sbjct: 187 TQAADILQPQLEEFGGSKP---VVVPVGPDQDPHLRLTRGLAGKM 228
>sp|O28579|SYW_ARCFU Tryptophan--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=trpS PE=3 SV=1
Length = 420
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 124/320 (38%), Gaps = 69/320 (21%)
Query: 17 IQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-K 75
+ + D E + LS E+++ L K IIA G F + K++ +
Sbjct: 99 VAIADMEAHSVRGLSWEKTRELGMLYIKSIIALGLREDAVIYFQS----KSSHVKDLAFE 154
Query: 76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQA------------------VPSFPSSFPH 117
++ V ++++ I+GF + + K+ +QA VP PH
Sbjct: 155 LSAEVNFSELRAIYGFNSDTSLAKMFVTAIQAADILHPQLSDFGGPKPVVVPVGADQDPH 214
Query: 118 L------------FS--------------GKDHLRCLIPCAIDQDPYF------------ 139
+ FS G ++L L D+ Y
Sbjct: 215 MRLTRDLAARISIFSFEPVEGGVRVRSRKGAEYLSSLRDLEFDKKIYEEHMDIFGEAEEI 274
Query: 140 -RMTRDVAPRIG---YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 195
R R + IG + P+ F L G GKMS+S P S I + D + K+
Sbjct: 275 ERAVRKIEVEIGGFAFIPPSSTYHRFTTGLTG--GKMSSSKPESYISLLDPPEEGAKKVM 332
Query: 196 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED-DAELEHIKKEYGAGGMLTGEVKQ 254
K AF+GG+ + E R+LG + + + SF L D D EL I+ E G +L G+ K+
Sbjct: 333 K-AFTGGRATAEEQRRLGGEPDRCVVFELYSFHLIDSDEELNQIEAECREGRLLCGKCKK 391
Query: 255 RLAKVLTELVERHQVARAAV 274
A+++ ++ HQ AV
Sbjct: 392 MAAELVKSFLKEHQEKMEAV 411
>sp|Q9HN83|SYW1_HALSA Tryptophan--tRNA ligase 1 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS1 PE=3 SV=1
Length = 513
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 150 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELH 209
G+ P+ + F L G GKMS+S+P S I + D + +K+ A +GG+++
Sbjct: 374 GFVPPSSVYHRFMTGLTG--GKMSSSEPASHISLLDDPETGADKVAA-ATTGGRDTAAEQ 430
Query: 210 RKLGANLEVDIPVKYLSFFL---EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 266
R+ G + D PV L +L +DDA E + E G L G K++ A ++ + +E
Sbjct: 431 RERGGEPD-DCPVYELYAYLLAGDDDALAEEVYAECANGDRLCGGCKEQAADLMAQFLET 489
Query: 267 HQVARAAVTD 276
HQ R A D
Sbjct: 490 HQENREAARD 499
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 88 IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 147
I+GF G+ + + Q +P L + K +IP DQDP+ R RD+A
Sbjct: 182 IYGFGGDTDVSHMQSVVTQMADIL---YPQLDAPK---PTVIPVGPDQDPHVRFARDLAE 235
Query: 148 RIGYHK 153
R Y K
Sbjct: 236 RTRYFK 241
>sp|Q9YA64|SYY_AERPE Tyrosine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=tyrS PE=1 SV=1
Length = 364
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 91/234 (38%), Gaps = 42/234 (17%)
Query: 58 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED---HIGKVSFPPVQAVPSFPSS 114
+ SD DY G + K A + + I G E+ K+ +P +Q F
Sbjct: 120 LASDKDYWG--LVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVSDIFYMD 177
Query: 115 FPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG------- 167
G +DQ + RDVA ++G KP I + +LQG
Sbjct: 178 LDIALGG-----------MDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEAS 226
Query: 168 --------ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSG----GQESVELHRKL--- 212
KMS S P +A++V DS I+ KI K G +E+ R +
Sbjct: 227 QGEIDDVLAEVKMSKSKPETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFA 286
Query: 213 --GANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 264
G L VD P KY + E ++++Y G + ++K +A+ L E+V
Sbjct: 287 RDGFTLRVDRPAKYGGPV--EYTSYEELERDYTDGRLHPLDLKNAVAESLIEVV 338
>sp|Q6L2J1|SYY_PICTO Tyrosine--tRNA ligase OS=Picrophilus torridus (strain ATCC 700027 /
DSM 9790 / JCM 10055 / NBRC 100828) GN=tyrS PE=3 SV=1
Length = 329
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 46/244 (18%)
Query: 47 IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKV---VGIFGFTGED---HIGKV 100
+A G + F+++ ++ ++KVAK + ++ + I G + ED K
Sbjct: 96 LAAGLNSNVKFVWASELVEKSDYWSLLLKVAKNASLLRIRRSLPIMGRSEEDADRDFSKY 155
Query: 101 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 160
+P +Q F G +DQ + RD+A R+ KP + +
Sbjct: 156 IYPLMQVTDIFYLDVDFALGG-----------MDQRHAHMLARDIAERMNIKKPVSVHTP 204
Query: 161 FFPALQGET-----GKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGAN 215
+L+G KMS S+P+SAI++TDS IK KI K A+ +E + N
Sbjct: 205 LLSSLKGSGRMDSFKKMSKSEPDSAIFMTDSNDDIKRKI-KNAYCPMKE-------VNGN 256
Query: 216 LEVDIPVKYLSF-FLED--------------DAELEHIKKEYGAGGMLTGEVKQRLAKVL 260
+DI +KY+ F + D D +++ + + Y +G + ++K + ++L
Sbjct: 257 PVIDI-LKYIIFPYYNDKISIKRPESKGGPVDVDMDSLTRMYISGEIHPVDLKNAVGELL 315
Query: 261 TELV 264
+++
Sbjct: 316 CDII 319
>sp|Q978Y8|SYW_THEVO Tryptophan--tRNA ligase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=trpS
PE=3 SV=1
Length = 426
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 154 PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLG 213
P+ L+G GKMS+S P+S I + D + K KI + A +GG+++ E RKLG
Sbjct: 299 PSATYQKLMKGLKG--GKMSSSVPDSLISMNDDVEEAKRKIMR-ALTGGRDTEEEQRKLG 355
Query: 214 ANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTG----EVKQRLAKVLTELVERHQV 269
E ++ ++DD + + +E +G + G E+ +++ L ++ E+ ++
Sbjct: 356 GEPEKCPVFDLYNYEIDDDKYVNEVFEECKSGKRMCGYCKREIADKMSIFLKDIKEKREI 415
Query: 270 ARAAVT 275
AR ++
Sbjct: 416 AREKLS 421
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 135
+ N++ ++GFT + I ++ P +QA + + + G ++P DQ
Sbjct: 149 LGNWTNMNELKALYGFTDSNDILHINAPLIQAADVLHTQLNN-YGGP--APTVVPVGFDQ 205
Query: 136 DPYFRMTRDVAPRI 149
DP+ R+ RD+A R+
Sbjct: 206 DPHIRLMRDLAKRM 219
>sp|P36421|SYYC_YEAST Tyrosine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TYS1 PE=1 SV=3
Length = 394
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 132 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 191
+DQ F + + P +GY K A + + P L + GKMSASDPNS I + + K +K
Sbjct: 189 GVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGL-AQGGKMSASDPNSKIDLLEEPKQVK 247
Query: 192 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 227
KIN S G +VE + L V P++ L F
Sbjct: 248 KKINSAFCSPG--NVEENGLLSFVQYVIAPIQELKF 281
>sp|Q99XH4|SYW_STRP1 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M1
GN=trpS PE=3 SV=1
Length = 340
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 117/289 (40%), Gaps = 47/289 (16%)
Query: 2 FTNR-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF- 59
NR +LQ+ K + + L D + E Q A D ++ G D ++ IF
Sbjct: 25 LKNRVFLQNENKYKMFVFLADQQALTDHAKESELIQESIGNVALDYLSVGLDPKQSTIFI 84
Query: 60 -SDFDYVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTGEDHIGKVSFPPVQA--VPSF 111
S + +Y N+V +A+ T + GF G + +P QA + +F
Sbjct: 85 QSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGESIPSGFLVYPVSQAADITAF 144
Query: 112 PSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------S 159
++ L+P DQ P TR++ YH L+E +
Sbjct: 145 KAN-------------LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKA 191
Query: 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD 219
P L G KMS S N IY++D A ++ K+ +E ++ N+
Sbjct: 192 GRLPGLDG-NAKMSKSLGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM--- 246
Query: 220 IPVKYLSFFL--EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 266
YL F ED A++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 247 -VFHYLDIFARKEDQADIEAMKEHYQIGGL--GDVKTK--RYLLDILER 290
>sp|P0DG61|SYW_STRPQ Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=trpS PE=3 SV=1
Length = 340
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 117/289 (40%), Gaps = 47/289 (16%)
Query: 2 FTNR-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF- 59
NR +LQ+ K + + L D + E Q A D ++ G D ++ IF
Sbjct: 25 LKNRVFLQNENKYKMFVFLADQQALTDHAKESELIQESIGNVALDYLSVGLDPKQSTIFI 84
Query: 60 -SDFDYVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTGEDHIGKVSFPPVQA--VPSF 111
S + +Y N+V +A+ T + GF G + +P QA + +F
Sbjct: 85 QSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGESIPSGFLVYPVSQAADITAF 144
Query: 112 PSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------S 159
++ L+P DQ P TR++ YH L+E +
Sbjct: 145 KAN-------------LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKA 191
Query: 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD 219
P L G KMS S N IY++D A ++ K+ +E ++ N+
Sbjct: 192 GRLPGLDG-NAKMSKSLGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM--- 246
Query: 220 IPVKYLSFFL--EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 266
YL F ED A++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 247 -VFHYLDIFARKEDQADIEAMKEHYQRGGL--GDVKTK--RYLLDILER 290
>sp|P67598|SYW_STRP8 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=trpS PE=3 SV=1
Length = 340
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 117/289 (40%), Gaps = 47/289 (16%)
Query: 2 FTNR-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF- 59
NR +LQ+ K + + L D + E Q A D ++ G D ++ IF
Sbjct: 25 LKNRVFLQNENKYKMFVFLADQQALTDHAKESELIQESIGNVALDYLSVGLDPKQSTIFI 84
Query: 60 -SDFDYVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTGEDHIGKVSFPPVQA--VPSF 111
S + +Y N+V +A+ T + GF G + +P QA + +F
Sbjct: 85 QSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGESIPSGFLVYPVSQAADITAF 144
Query: 112 PSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------S 159
++ L+P DQ P TR++ YH L+E +
Sbjct: 145 KAN-------------LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKA 191
Query: 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD 219
P L G KMS S N IY++D A ++ K+ +E ++ N+
Sbjct: 192 GRLPGLDG-NAKMSKSLGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM--- 246
Query: 220 IPVKYLSFFL--EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 266
YL F ED A++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 247 -VFHYLDIFARKEDQADIEAMKEHYQRGGL--GDVKTK--RYLLDILER 290
>sp|Q5X9A2|SYW_STRP6 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=trpS PE=3 SV=2
Length = 340
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 117/289 (40%), Gaps = 47/289 (16%)
Query: 2 FTNR-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF- 59
NR +LQ+ K + + L D + E Q A D ++ G D ++ IF
Sbjct: 25 LKNRVFLQNENKYKMFVFLADQQALTDHAKESELIQESIGNVALDYLSVGLDPKQSTIFI 84
Query: 60 -SDFDYVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTGEDHIGKVSFPPVQA--VPSF 111
S + +Y N+V +A+ T + GF G + +P QA + +F
Sbjct: 85 QSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGESIPSGFLVYPVSQAADITAF 144
Query: 112 PSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------S 159
++ L+P DQ P TR++ YH L+E +
Sbjct: 145 KAN-------------LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKA 191
Query: 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD 219
P L G KMS S N IY++D A ++ K+ +E ++ N+
Sbjct: 192 GRLPGLDG-NAKMSKSLGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM--- 246
Query: 220 IPVKYLSFFL--EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 266
YL F ED A++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 247 -VFHYLDIFARKEDQADIEAMKEHYQRGGL--GDVKTK--RYLLDILER 290
>sp|P0DG60|SYW_STRP3 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=trpS PE=3 SV=1
Length = 340
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 117/289 (40%), Gaps = 47/289 (16%)
Query: 2 FTNR-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF- 59
NR +LQ+ K + + L D + E Q A D ++ G D ++ IF
Sbjct: 25 LKNRVFLQNENKYKMFVFLADQQALTDHAKESELIQESIGNVALDYLSVGLDPKQSTIFI 84
Query: 60 -SDFDYVG--GAFYKNMVKVAKCV---TYNKVVGIFGFTGEDHIGKVSFPPVQA--VPSF 111
S + +Y N+V +A+ T + GF G + +P QA + +F
Sbjct: 85 QSQIPELAELSMYYMNLVSLARLERNPTVKTEIAQKGFGESIPSGFLVYPVSQAADITAF 144
Query: 112 PSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPALIE----------S 159
++ L+P DQ P TR++ YH L+E +
Sbjct: 145 KAN-------------LVPVGNDQKPMIEQTREIVRSFNHTYHTDCLVEPEGIYPENEKA 191
Query: 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD 219
P L G KMS S N IY++D A ++ K+ +E ++ N+
Sbjct: 192 GRLPGLDG-NAKMSKSLGN-GIYLSDDADTVRKKVMSMYTDPNHIKIEDPGQIEGNM--- 246
Query: 220 IPVKYLSFFL--EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 266
YL F ED A++E +K+ Y GG+ G+VK + + L +++ER
Sbjct: 247 -VFHYLDIFARKEDQADIEAMKEHYQRGGL--GDVKTK--RYLLDILER 290
>sp|Q46BQ5|SYY_METBF Tyrosine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=tyrS PE=3 SV=1
Length = 317
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 17/186 (9%)
Query: 15 LVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYK-NM 73
+ + L D + + ++EE +++A N + IA G D KT DY GA Y N+
Sbjct: 63 ITVLLADVHAYLNRKGTLEEVRKIADYNKRCFIALGLDKEKTNFVYGSDYQLGAEYMLNV 122
Query: 74 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA- 132
+K+++ VT N+ D +G+ P + +P L D + A
Sbjct: 123 LKLSRSVTLNR-----ARRSMDEVGRAMDDPTVSQMVYP-----LMQAIDIAMLGVDIAV 172
Query: 133 --IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 190
IDQ + R+ +G+ P I + P L G G AS + I V D+ + I
Sbjct: 173 GGIDQRKIHMLARENLKNLGFETPICIHT---PILLGLDGTKMASSKENFISVDDTEEEI 229
Query: 191 KNKINK 196
K+ K
Sbjct: 230 YRKLKK 235
>sp|Q8TSI1|SYY_METAC Tyrosine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=tyrS PE=3 SV=1
Length = 317
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 22/196 (11%)
Query: 7 LQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDFD 63
LQ A FK+ ++ L D + K ++EE +++A N + IA G D +T F++ SDF
Sbjct: 56 LQKAGFKITVL--LADVHAYLNKKGTLEEVRKIADYNRRCFIALGLDEEQTDFVYGSDFQ 113
Query: 64 YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 123
+G + N++K+++ VT N+ D +G+ P + +P L D
Sbjct: 114 -LGAEYMLNVLKLSRAVTLNR-----AKRSMDEVGRAMDDPTVSQMVYP-----LMQAID 162
Query: 124 HLRCLIPCA---IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
+ A IDQ + R+ +G+ P I + P L G G AS ++
Sbjct: 163 IALLEVDVAVGGIDQRKIHMLARENLKSLGFETPICIHT---PILLGLDGTKMASSKDNF 219
Query: 181 IYVTDSAKAIKNKINK 196
I + D+ + I K K
Sbjct: 220 ISIDDTGEDIYRKFKK 235
>sp|Q8PVK0|SYY_METMA Tyrosine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=tyrS
PE=3 SV=1
Length = 317
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 22/196 (11%)
Query: 7 LQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDFD 63
LQ A FK+ ++ L D + + ++EE +++A N + IA G D +T F++ SDF
Sbjct: 56 LQKAGFKITVL--LADVHAYLNRKGTLEEVRKIADYNRRCFIALGLDEEQTDFVYGSDFQ 113
Query: 64 YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 123
+G + N++K+++ VT N+ D +G+ P + +P L D
Sbjct: 114 -LGAEYMLNVLKLSRAVTLNR-----AKRSMDEVGRAMDDPTVSQMVYP-----LMQAID 162
Query: 124 HLRCLIPCA---IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 180
+ A IDQ + R+ +G+ P I + P L G G AS ++
Sbjct: 163 IALLEVDVAVGGIDQRKIHMLARENLKSLGFETPICIHT---PILLGLDGTKMASSKDNF 219
Query: 181 IYVTDSAKAIKNKINK 196
I V D+ + I K K
Sbjct: 220 ISVDDTEEEIYRKFKK 235
>sp|O83640|SYW_TREPA Tryptophan--tRNA ligase OS=Treponema pallidum (strain Nichols)
GN=trpS PE=3 SV=1
Length = 337
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 108/266 (40%), Gaps = 43/266 (16%)
Query: 38 LARENAKDIIACGFDVTKTFIFSDF---DYVGGAF-YKNMVKVAKC--VTYNKVVGIFGF 91
L RE D +ACG D + I+ + AF + N+V V + + K +
Sbjct: 60 LVRELVLDYLACGIDAQRAVIYLQSAVPEVTELAFIFANLVTVPRLQRIPSLKEMAQAAN 119
Query: 92 TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY 151
E G + +P +QA + + HL +P D + + +TR+VA R
Sbjct: 120 LSELPFGLLGYPVLQAA--------DILLARAHL---VPVGKDNESHVELTREVAKRFNR 168
Query: 152 HKPALIESSFFP----------ALQGETG--KMSASDPNSAIYVTDSAKAIKNKINKYAF 199
+ FP L G G KMS S N AI+++D + ++ K+
Sbjct: 169 -----LYGEVFPLPRALLSDCATLVGTDGQAKMSKSLGN-AIFLSDDEETVRRKVRAMYT 222
Query: 200 SGGQESVELHRKLGANLEVDIPV-KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAK 258
+ ++ ++ N PV Y F + E+ H K+ Y AG + EVK LA+
Sbjct: 223 DPARTRADIPGRVEGN-----PVFAYHDAFNPNTDEVAHFKERYRAGRVGDTEVKDALAR 277
Query: 259 VLTELVERHQVARAAVTDEMVDAFMA 284
L +E + RA + E A++A
Sbjct: 278 ALNTFLEPIRARRAQL--EQQPAYLA 301
>sp|O84589|SYW_CHLTR Tryptophan--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=trpS PE=3 SV=1
Length = 346
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 128 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPA---LQGE---------TGKMSAS 175
L+P D + + +TRD+A + FP LQGE GKMS S
Sbjct: 151 LVPVGKDNEAHVELTRDIAKTFNR-----LYGEVFPEPDILQGELTALVGTNGQGKMSKS 205
Query: 176 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL 235
N+AIY++D AK ++ KI K + +H +E + Y F E+
Sbjct: 206 -ANNAIYLSDDAKTVQEKIRKLYTDPNR----IHATTPGRVEGNPLFIYHDLFNPHKEEV 260
Query: 236 EHIKKEYGAGGMLTGEVKQRLAK 258
E K Y G + EVK RLA+
Sbjct: 261 EEFKTRYRQGCIRDVEVKARLAE 283
>sp|Q9HKT3|SYY_THEAC Tyrosine--tRNA ligase OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=tyrS PE=3 SV=1
Length = 332
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 102/263 (38%), Gaps = 69/263 (26%)
Query: 45 DIIACGFDV-TKTFI---FSDFDYVGGA-------FYKNMVKVAKCVTYNKVVGIFGFTG 93
D+I G ++ KTF + DYV + +++ + AK T +V+ G
Sbjct: 82 DLIRKGGEILRKTFQAEGLTKADYVWASDLVDSSEYWRMFIDTAKRSTLKRVIRSLPIMG 141
Query: 94 ------EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 147
E +P +Q F F G +DQ + RD+A
Sbjct: 142 RNETDAEKDFSMYLYPIMQVTDIFYLDVDMAFGG-----------MDQRHAHMLARDIAE 190
Query: 148 RIGYHKPALIESSFFPALQGETG-----KMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 202
++ K + +L+G KMS SDPNSAI VTD + I+ KIN A+
Sbjct: 191 KMKRKKVVSVHGFLLSSLKGNARMDNFVKMSKSDPNSAILVTDHMEDIERKINA-AYCPP 249
Query: 203 QE--------------------SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
Q+ S+E+H G+N +++ +E+ + Y
Sbjct: 250 QQVEGNPVAEIMKYIIIPYYGKSIEIH---GSNGVINLD------------SVENFDQAY 294
Query: 243 GAGGMLTGEVKQRLAKVLTELVE 265
G + ++K ++A +L E+VE
Sbjct: 295 QRGEIQPADLKHKVATILNEMVE 317
>sp|Q821H9|SYW_CHLCV Tryptophan--tRNA ligase OS=Chlamydophila caviae (strain GPIC)
GN=trpS PE=3 SV=1
Length = 345
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 99/252 (39%), Gaps = 45/252 (17%)
Query: 45 DIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT----------GE 94
D ++ G D K+ I+ Y+ + + ++ N+++GI G
Sbjct: 72 DWLSVGIDPNKSSIY--LQSAIPEIYELHLLFSMLISVNRIMGIPSLKEMAKNASIEEGG 129
Query: 95 DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP 154
+G + +P +Q+ + L+P D + + +TRD+A
Sbjct: 130 LSLGLMGYPVLQSADILLAKAQ-----------LVPVGKDNEAHIELTRDIARNFNR--- 175
Query: 155 ALIESSFFP---ALQGE---------TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 202
+ FP LQGE GKMS S N+AIY++D I++K+ +
Sbjct: 176 --LYGEIFPEPETLQGELTSLVGIDGQGKMSKS-ANNAIYLSDDDATIEDKVRRMYTDPN 232
Query: 203 QESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 262
+ +H +E + Y F + E+E K Y G + E+K RLA+ L
Sbjct: 233 R----IHASTPGRVEGNPLFIYHDIFNPNKEEVEEFKTRYRQGCIKDVEIKTRLAEELIR 288
Query: 263 LVERHQVARAAV 274
++ + RA +
Sbjct: 289 FLQPFREKRAEL 300
>sp|Q9PJF5|SYW_CHLMU Tryptophan--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=trpS PE=3 SV=1
Length = 346
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 128 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPA---LQGE---------TGKMSAS 175
L+P D + + +TRD+A + S FP LQGE GKMS S
Sbjct: 151 LVPVGKDNEAHVELTRDIAKTFNR-----LYGSVFPEPDILQGELTSLVGTNGQGKMSKS 205
Query: 176 DPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL 235
N+AIY++D K ++ KI K + +H +E + Y F E+
Sbjct: 206 -ANNAIYLSDDEKTVQEKIRKMYTDPNR----VHATTPGRVEGNPLFIYHDLFNPHKEEV 260
Query: 236 EHIKKEYGAGGMLTGEVKQRLAK 258
E K Y G + EVK RLA+
Sbjct: 261 EEFKTRYRQGCIKDVEVKARLAE 283
>sp|O29482|SYY_ARCFU Tyrosine--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC 49558
/ VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=tyrS
PE=1 SV=1
Length = 323
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 15 LVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFYKNM 73
+++ L D + + + EE +A N K IA G D ++ F+ + + ++
Sbjct: 66 IIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDV 125
Query: 74 VKVAKCVTYNKV---VGIFGFTGED-HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 129
+K+A+ T N+ + ED + ++ +P +QA+ HL G D L
Sbjct: 126 LKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQAL-----DIAHL--GVD----LA 174
Query: 130 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 189
IDQ + R+ PR+GY P + + L G+ KMS+S N I V D +
Sbjct: 175 VGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDGQ--KMSSSKGNY-ISVRDPPEE 231
Query: 190 IKNKINK 196
++ KI K
Sbjct: 232 VERKIRK 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,786,783
Number of Sequences: 539616
Number of extensions: 4661643
Number of successful extensions: 12663
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 12476
Number of HSP's gapped (non-prelim): 178
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)