Query 022694
Match_columns 293
No_of_seqs 183 out of 1197
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:28:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02486 aminoacyl-tRNA ligase 100.0 9.8E-73 2.1E-77 534.8 10.9 287 2-289 97-383 (383)
2 COG0180 TrpS Tryptophanyl-tRNA 100.0 7.7E-71 1.7E-75 505.5 10.7 264 5-287 30-312 (314)
3 KOG2145 Cytoplasmic tryptophan 100.0 3.5E-68 7.7E-73 473.1 18.4 289 1-290 108-397 (397)
4 PRK12285 tryptophanyl-tRNA syn 100.0 3.3E-69 7.1E-74 509.6 9.0 274 2-288 89-367 (368)
5 PRK00927 tryptophanyl-tRNA syn 100.0 4.6E-67 9.9E-72 491.1 8.2 264 5-287 25-310 (333)
6 PRK12282 tryptophanyl-tRNA syn 100.0 8.7E-66 1.9E-70 481.5 9.1 263 6-287 29-309 (333)
7 PRK12556 tryptophanyl-tRNA syn 100.0 8.5E-66 1.8E-70 481.1 8.8 259 6-287 30-311 (332)
8 PLN02886 aminoacyl-tRNA ligase 100.0 1.8E-65 3.8E-70 483.8 9.0 261 5-287 70-364 (389)
9 PRK12284 tryptophanyl-tRNA syn 100.0 8.2E-65 1.8E-69 482.4 9.1 258 7-287 30-311 (431)
10 TIGR00233 trpS tryptophanyl-tR 100.0 1.7E-64 3.6E-69 472.5 10.9 263 5-286 27-307 (328)
11 PRK12283 tryptophanyl-tRNA syn 100.0 8.9E-64 1.9E-68 471.7 9.1 262 5-287 26-376 (398)
12 KOG2713 Mitochondrial tryptoph 100.0 8E-63 1.7E-67 437.9 5.5 263 4-286 36-323 (347)
13 PRK08560 tyrosyl-tRNA syntheta 100.0 2E-62 4.4E-67 459.2 8.3 247 5-275 55-324 (329)
14 cd00806 TrpRS_core catalytic c 100.0 4.2E-60 9E-65 434.6 7.0 240 5-263 25-280 (280)
15 PTZ00126 tyrosyl-tRNA syntheta 100.0 2.1E-58 4.6E-63 437.7 12.8 245 6-274 93-366 (383)
16 PTZ00348 tyrosyl-tRNA syntheta 100.0 7.1E-56 1.5E-60 443.2 9.1 253 11-275 63-341 (682)
17 cd00805 TyrRS_core catalytic c 100.0 1.7E-52 3.6E-57 382.5 2.1 225 5-262 26-268 (269)
18 PF00579 tRNA-synt_1b: tRNA sy 100.0 5.9E-53 1.3E-57 389.8 -2.9 245 5-265 30-292 (292)
19 cd00395 Tyr_Trp_RS_core cataly 100.0 1.3E-48 2.7E-53 357.3 3.6 228 5-263 25-273 (273)
20 KOG2144 Tyrosyl-tRNA synthetas 100.0 5.7E-47 1.2E-51 337.3 5.7 248 8-276 62-336 (360)
21 PTZ00348 tyrosyl-tRNA syntheta 100.0 7.6E-45 1.6E-49 363.9 9.6 244 5-272 400-661 (682)
22 PRK05912 tyrosyl-tRNA syntheta 100.0 1.3E-44 2.7E-49 347.3 7.3 235 5-274 59-318 (408)
23 PRK13354 tyrosyl-tRNA syntheta 100.0 1.1E-43 2.3E-48 340.6 6.8 237 2-275 57-317 (410)
24 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 2.5E-36 5.4E-41 287.3 6.3 216 5-267 56-295 (377)
25 COG0162 TyrS Tyrosyl-tRNA synt 100.0 2.1E-31 4.5E-36 253.1 3.6 245 5-286 58-320 (401)
26 KOG2623 Tyrosyl-tRNA synthetas 99.3 5.3E-13 1.2E-17 124.5 3.4 229 5-266 89-351 (467)
27 cd00808 GluRS_core catalytic c 98.8 1.5E-09 3.2E-14 97.6 3.2 149 11-196 32-191 (239)
28 cd00802 class_I_aaRS_core cata 98.6 1.3E-09 2.8E-14 90.3 -4.0 65 102-176 78-143 (143)
29 cd00418 GlxRS_core catalytic c 97.9 1.2E-05 2.5E-10 72.1 4.5 149 9-196 30-182 (230)
30 PRK00750 lysK lysyl-tRNA synth 97.6 3.6E-05 7.8E-10 76.7 2.3 55 128-185 237-293 (510)
31 cd00674 LysRS_core_class_I cat 96.8 0.00024 5.2E-09 67.6 -0.7 55 128-185 230-288 (353)
32 PRK01406 gltX glutamyl-tRNA sy 93.5 0.056 1.2E-06 53.6 3.0 66 127-196 209-280 (476)
33 PRK05743 ileS isoleucyl-tRNA s 92.8 0.028 6E-07 60.1 -0.4 56 120-182 543-602 (912)
34 cd00807 GlnRS_core catalytic c 92.6 0.18 3.9E-06 45.4 4.6 141 8-177 29-170 (238)
35 cd00668 Ile_Leu_Val_MetRS_core 92.3 0.026 5.5E-07 52.7 -1.3 55 128-185 229-286 (312)
36 PRK01611 argS arginyl-tRNA syn 92.2 0.031 6.8E-07 55.8 -0.9 59 128-189 276-339 (507)
37 cd09287 GluRS_non_core catalyt 91.7 0.3 6.6E-06 44.1 5.0 143 8-177 29-172 (240)
38 cd00817 ValRS_core catalytic c 91.3 0.046 1E-06 52.6 -0.7 53 128-184 299-355 (382)
39 TIGR00467 lysS_arch lysyl-tRNA 90.7 0.066 1.4E-06 53.6 -0.3 56 128-185 228-287 (515)
40 PRK14895 gltX glutamyl-tRNA sy 90.1 0.064 1.4E-06 53.5 -0.9 72 127-200 198-273 (513)
41 PRK00260 cysS cysteinyl-tRNA s 89.7 0.094 2E-06 51.8 -0.2 60 117-185 215-279 (463)
42 cd00812 LeuRS_core catalytic c 89.6 0.068 1.5E-06 50.0 -1.2 54 128-185 227-288 (314)
43 TIGR03838 queuosine_YadB gluta 89.4 0.15 3.3E-06 46.9 1.0 85 102-196 170-254 (272)
44 TIGR00392 ileS isoleucyl-tRNA 89.3 0.09 1.9E-06 55.9 -0.7 54 128-185 567-624 (861)
45 cd00818 IleRS_core catalytic c 89.2 0.077 1.7E-06 50.2 -1.2 53 128-184 255-311 (338)
46 PRK11893 methionyl-tRNA synthe 88.7 0.13 2.8E-06 51.1 0.0 52 128-185 257-312 (511)
47 PRK13804 ileS isoleucyl-tRNA s 88.5 0.13 2.7E-06 55.4 -0.3 57 120-183 581-641 (961)
48 TIGR00464 gltX_bact glutamyl-t 88.0 0.15 3.3E-06 50.5 -0.0 66 127-196 199-270 (470)
49 KOG0432 Valyl-tRNA synthetase 87.6 0.3 6.4E-06 51.2 1.8 25 155-182 579-603 (995)
50 PF01921 tRNA-synt_1f: tRNA sy 87.5 0.054 1.2E-06 51.6 -3.4 66 128-196 237-311 (360)
51 TIGR00456 argS arginyl-tRNA sy 87.4 0.13 2.8E-06 52.2 -0.9 63 128-196 331-396 (566)
52 TIGR00435 cysS cysteinyl-tRNA 87.4 0.11 2.4E-06 51.3 -1.4 62 117-185 214-278 (465)
53 PLN02381 valyl-tRNA synthetase 86.9 0.13 2.9E-06 55.8 -1.2 56 121-183 607-666 (1066)
54 PRK04156 gltX glutamyl-tRNA sy 86.7 0.21 4.5E-06 50.5 0.1 67 100-177 278-344 (567)
55 PRK05710 glutamyl-Q tRNA(Asp) 86.6 0.23 5E-06 46.3 0.3 49 127-177 194-242 (299)
56 PF00133 tRNA-synt_1: tRNA syn 86.4 0.2 4.2E-06 51.2 -0.3 56 121-183 513-572 (601)
57 COG0008 GlnS Glutamyl- and glu 86.3 0.27 5.8E-06 48.7 0.6 55 117-177 202-256 (472)
58 PRK05729 valS valyl-tRNA synth 86.3 0.15 3.3E-06 54.3 -1.2 54 128-185 476-533 (874)
59 PRK13208 valS valyl-tRNA synth 86.3 0.2 4.3E-06 52.9 -0.3 53 128-185 489-546 (800)
60 PLN02286 arginine-tRNA ligase 86.1 0.42 9.2E-06 48.6 1.9 63 127-192 330-398 (576)
61 PLN02843 isoleucyl-tRNA synthe 86.0 0.24 5.1E-06 53.5 0.1 57 120-183 562-622 (974)
62 PRK14900 valS valyl-tRNA synth 85.2 0.15 3.3E-06 55.3 -1.8 54 128-185 494-551 (1052)
63 TIGR00395 leuS_arch leucyl-tRN 84.9 0.29 6.3E-06 52.6 0.1 64 128-196 576-649 (938)
64 PTZ00419 valyl-tRNA synthetase 84.5 0.19 4.1E-06 54.3 -1.5 55 121-182 537-595 (995)
65 COG0215 CysS Cysteinyl-tRNA sy 84.2 0.46 1E-05 46.7 1.2 58 130-191 226-292 (464)
66 PLN02943 aminoacyl-tRNA ligase 84.2 0.29 6.4E-06 52.7 -0.2 69 121-196 535-612 (958)
67 PRK12300 leuS leucyl-tRNA synt 83.5 0.41 8.9E-06 51.2 0.5 53 128-184 533-589 (897)
68 cd00671 ArgRS_core catalytic c 82.6 0.28 6E-06 43.2 -1.0 45 130-176 164-211 (212)
69 TIGR00422 valS valyl-tRNA synt 82.6 0.29 6.3E-06 52.1 -1.0 54 128-185 481-538 (861)
70 PLN02959 aminoacyl-tRNA ligase 82.5 0.25 5.4E-06 53.8 -1.5 53 128-185 674-731 (1084)
71 PRK06039 ileS isoleucyl-tRNA s 82.2 0.32 7E-06 52.5 -0.9 57 121-184 544-604 (975)
72 cd00814 MetRS_core catalytic c 82.1 0.32 6.9E-06 45.6 -0.9 52 128-185 238-293 (319)
73 PLN02563 aminoacyl-tRNA ligase 81.7 0.41 8.8E-06 51.5 -0.3 41 121-164 615-664 (963)
74 PRK12268 methionyl-tRNA synthe 81.6 0.52 1.1E-05 47.5 0.4 54 128-185 290-347 (556)
75 COG1384 LysS Lysyl-tRNA synthe 81.1 0.48 1E-05 47.0 -0.0 55 128-185 232-290 (521)
76 TIGR00396 leuS_bact leucyl-tRN 80.5 0.39 8.5E-06 51.0 -0.9 59 121-185 519-617 (842)
77 PLN02882 aminoacyl-tRNA ligase 80.2 0.47 1E-05 52.1 -0.5 55 121-182 566-624 (1159)
78 PRK00133 metG methionyl-tRNA s 77.3 0.76 1.7E-05 47.6 0.1 52 128-185 287-342 (673)
79 PRK12418 cysteinyl-tRNA synthe 75.7 1.2 2.6E-05 43.1 0.9 53 129-184 218-273 (384)
80 PRK12267 methionyl-tRNA synthe 75.7 0.67 1.5E-05 47.7 -0.9 52 128-185 257-312 (648)
81 PRK12410 glutamylglutaminyl-tR 75.4 0.9 1.9E-05 44.6 -0.0 142 115-276 184-343 (433)
82 TIGR03447 mycothiol_MshC cyste 75.3 1.2 2.7E-05 43.3 0.9 51 130-183 246-299 (411)
83 cd00672 CysRS_core catalytic c 75.1 1.1 2.3E-05 39.7 0.4 53 130-185 133-187 (213)
84 PLN02627 glutamyl-tRNA synthet 74.1 1.3 2.8E-05 44.5 0.7 66 127-196 251-322 (535)
85 TIGR00398 metG methionyl-tRNA 73.8 0.92 2E-05 45.5 -0.4 54 128-185 285-340 (530)
86 COG0018 ArgS Arginyl-tRNA synt 73.6 1.3 2.9E-05 45.0 0.7 71 122-194 333-405 (577)
87 PTZ00427 isoleucine-tRNA ligas 70.8 1.2 2.5E-05 49.2 -0.5 54 121-182 672-730 (1205)
88 PRK00390 leuS leucyl-tRNA synt 70.5 0.95 2.1E-05 47.9 -1.2 53 121-185 522-583 (805)
89 PF01406 tRNA-synt_1e: tRNA sy 69.9 1.8 3.9E-05 40.3 0.6 60 5-64 38-104 (300)
90 PF09334 tRNA-synt_1g: tRNA sy 69.6 1.4 2.9E-05 42.7 -0.3 33 149-185 307-340 (391)
91 PRK12451 arginyl-tRNA syntheta 69.3 1.3 2.7E-05 45.0 -0.6 58 128-189 328-388 (562)
92 PRK12558 glutamyl-tRNA synthet 68.8 2.2 4.7E-05 42.1 0.9 72 127-200 198-273 (445)
93 PRK14536 cysS cysteinyl-tRNA s 68.4 1.2 2.7E-05 44.3 -0.9 54 128-184 236-291 (490)
94 PF00749 tRNA-synt_1c: tRNA sy 67.8 1.5 3.3E-05 41.1 -0.3 68 127-196 201-274 (314)
95 PTZ00402 glutamyl-tRNA synthet 66.2 1.9 4.2E-05 43.9 0.0 66 101-177 229-294 (601)
96 cd02156 nt_trans nucleotidyl t 66.1 1.3 2.8E-05 34.2 -1.0 45 128-176 59-105 (105)
97 PTZ00399 cysteinyl-tRNA-synthe 65.3 1.7 3.6E-05 45.0 -0.7 61 117-185 263-328 (651)
98 COG0495 LeuS Leucyl-tRNA synth 65.1 26 0.00057 37.2 8.0 54 129-185 530-592 (814)
99 COG0525 ValS Valyl-tRNA synthe 64.7 2.4 5.1E-05 45.0 0.3 29 152-183 506-536 (877)
100 COG0060 IleS Isoleucyl-tRNA sy 64.0 4.6 0.0001 43.3 2.3 57 128-193 558-619 (933)
101 PLN02946 cysteine-tRNA ligase 63.6 2.4 5.1E-05 43.0 0.1 51 129-183 281-334 (557)
102 PLN03233 putative glutamate-tR 63.1 2.5 5.5E-05 42.4 0.1 65 101-176 187-251 (523)
103 PRK14535 cysS cysteinyl-tRNA s 62.9 2.6 5.5E-05 43.6 0.2 25 157-185 497-521 (699)
104 PF00750 tRNA-synt_1d: tRNA sy 59.5 1.6 3.4E-05 41.7 -2.0 70 121-193 236-309 (354)
105 PRK14534 cysS cysteinyl-tRNA s 57.2 3.5 7.6E-05 41.0 0.0 53 128-184 236-291 (481)
106 PLN02224 methionine-tRNA ligas 53.2 5.7 0.00012 40.8 0.8 51 129-185 325-379 (616)
107 PLN02610 probable methionyl-tR 47.7 7.9 0.00017 41.1 0.8 29 152-184 331-360 (801)
108 PLN02859 glutamine-tRNA ligase 47.4 7.8 0.00017 40.8 0.7 67 100-177 439-505 (788)
109 KOG0437 Leucyl-tRNA synthetase 45.9 16 0.00036 38.2 2.7 36 170-206 709-744 (1080)
110 COG0143 MetG Methionyl-tRNA sy 43.5 11 0.00024 38.3 1.0 26 170-196 332-362 (558)
111 COG0162 TyrS Tyrosyl-tRNA synt 42.5 25 0.00054 34.2 3.3 103 170-275 232-358 (401)
112 PLN02907 glutamate-tRNA ligase 36.1 11 0.00023 39.7 -0.4 64 102-176 390-453 (722)
113 PRK05347 glutaminyl-tRNA synth 22.9 36 0.00078 34.6 0.8 65 102-177 211-276 (554)
114 KOG2007 Cysteinyl-tRNA synthet 22.4 35 0.00075 34.2 0.5 72 117-196 253-334 (586)
115 KOG3046 Transcription factor, 20.6 1.3E+02 0.0029 24.9 3.5 81 159-270 51-132 (147)
116 PF09164 VitD-bind_III: Vitami 20.5 1.2E+02 0.0025 21.9 2.7 26 237-264 1-26 (68)
117 PF06825 HSBP1: Heat shock fac 20.3 2.9E+02 0.0063 19.0 4.6 23 255-277 3-25 (54)
No 1
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=9.8e-73 Score=534.80 Aligned_cols=287 Identities=87% Similarity=1.355 Sum_probs=270.4
Q ss_pred cchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheee
Q 022694 2 FTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 81 (293)
Q Consensus 2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t 81 (293)
++ +|||++.|+.++|+|||+|+++.+..++|++++++++++++|+|||+||+|++||.|++|...+||..+++++|++|
T Consensus 97 ~~-~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~~~~~~~~~~l~r~~t 175 (383)
T PLN02486 97 FT-KYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVGGAFYKNMVKIAKCVT 175 (383)
T ss_pred HH-HHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHhHhHHHHHHHHHhhCc
Confidence 57 89999889999999999999998669999999999999999999999999999999998865568999999999999
Q ss_pred ecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccc
Q 022694 82 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF 161 (293)
Q Consensus 82 ~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~ 161 (293)
++++++.+|+.++.++|+++||+|||||+|+.+||.++....+++|+||||.||+||+++|||+|+|||+.+|+++++++
T Consensus 176 ~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia~r~~~~kp~~~~~~~ 255 (383)
T PLN02486 176 LNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRLGYYKPALIESRF 255 (383)
T ss_pred HHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHHHHhCCCCcceecccc
Confidence 99999999998888999999999999999988887665555568899999999999999999999999999999999999
Q ss_pred cccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHHh
Q 022694 162 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241 (293)
Q Consensus 162 lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~~ 241 (293)
+|||+|+++|||||.|||+|+|+|+|++|++||++||||||+.+.+++++.||||++|++|+|+.+|.++++++++|+++
T Consensus 256 lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~ 335 (383)
T PLN02486 256 FPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKE 335 (383)
T ss_pred ccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHH
Confidence 99999987899999999999999999999999999999999999999999999999999999999997667899999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCC
Q 022694 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP 289 (293)
Q Consensus 242 y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~ 289 (293)
|++|+++|++||+.|++.|+++|+|+|+||++++++.|++++..++++
T Consensus 336 y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~~~~~~~~~~~~~~~~~ 383 (383)
T PLN02486 336 YGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP 383 (383)
T ss_pred hccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999999999999999999999999999998874
No 2
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-71 Score=505.54 Aligned_cols=264 Identities=29% Similarity=0.433 Sum_probs=234.9
Q ss_pred HH-HHhhcCCcEEEEeecccchhhcccCh-HHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694 5 RY-LQDAFKVPLVIQLTDDEKCMWKNLSV-EESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK 75 (293)
Q Consensus 5 k~-lQ~~~g~~~~I~iaD~ha~~~~~~~~-~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~ 75 (293)
.| +|+.+ ..+++.|||+||+|.+..++ +.+++++++++++||||||||+|++||.||++++| |.+. .+++
T Consensus 30 ~v~~q~~~-~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e~~eLa~~l~~~~~~ge 108 (314)
T COG0180 30 WVLLQEEY-YECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPEHAELAWLLSCVTNFGE 108 (314)
T ss_pred HHHHhccc-CceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchHHHHHHHHHHccCcHHH
Confidence 55 55542 45677779999999864333 88999999999999999999999999999999987 3443 4899
Q ss_pred hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC-----
Q 022694 76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----- 150 (293)
Q Consensus 76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n----- 150 (293)
|.|+++||++..+.+ .++++|++.||+|||| |||.|++ |+||||.||+||+|||||||+|||
T Consensus 109 l~r~~~fKdk~~~~~--~~~~~Gl~~YPvlqAA--------DILl~~a---~~VPVG~DQ~qHleLtRDiA~rfn~~y~~ 175 (314)
T COG0180 109 LERMTQFKDKSAKKG--ESIPIGLLTYPVLQAA--------DILLYQA---TLVPVGEDQDQHLELTRDIARRFNHLYGE 175 (314)
T ss_pred HHhhcCcchhhhccc--ccccccchhccHHHHH--------HhhhccC---CeeccCCCchHHHHHHHHHHHHHHhhcCC
Confidence 999999999988764 4889999999999999 8999999 589999999999999999999999
Q ss_pred -CCCccccccc--ccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee
Q 022694 151 -YHKPALIESS--FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 227 (293)
Q Consensus 151 -~~~p~~l~~~--~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~ 227 (293)
+++|..+++. +||||+|| +|||||+|||+|+|+|+|++|++||++ |+||| .+..++++ ||+|++||+|.|+.+
T Consensus 176 ~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~-~~td~-~~~~~~~~-~g~Pe~~~l~~~~~~ 251 (314)
T COG0180 176 VFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIKK-AATDG-PTLIEYRK-GGKPEVCNLFEIYSA 251 (314)
T ss_pred ccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHHHH-hccCC-CCccccCC-CCCCCcchHHHHHHH
Confidence 6899998876 99999998 999999999999999999999999999 99998 44445555 999999999999999
Q ss_pred eecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694 228 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 287 (293)
Q Consensus 228 ~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~ 287 (293)
|+. +++.+++++.|++|+++||+||+.|++.|+++|+|||+||++++++ +++++|..+.
T Consensus 252 ~~~-~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~~il~~g~ 312 (314)
T COG0180 252 FFE-DDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLDDILRKGA 312 (314)
T ss_pred hcC-CCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhccC
Confidence 964 5667799999999999999999999999999999999999999887 8999987764
No 3
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-68 Score=473.15 Aligned_cols=289 Identities=66% Similarity=1.110 Sum_probs=281.8
Q ss_pred CcchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccc-hhhhhhHHhhhhe
Q 022694 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKC 79 (293)
Q Consensus 1 ~~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~-~~~~~~~~~l~r~ 79 (293)
+|| ||||+.++++++|+++|.++++....+.++..+.+++++++++|||+||++|+||.+.++.+ +.++.++.++++.
T Consensus 108 ift-KwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfIFsn~~y~g~~~fy~nivki~k~ 186 (397)
T KOG2145|consen 108 IFT-KWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFIFSNLDYMGGPAFYENIVKISKC 186 (397)
T ss_pred HHH-HHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEEEechhhccCcHHHHHHHHHhhe
Confidence 588 99999999999999999999998559999999999999999999999999999999999986 5999999999999
Q ss_pred eeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694 80 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 159 (293)
Q Consensus 80 ~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~ 159 (293)
+|+++++..+||+++.++|++.+|..|||++|+++||.|+....|++|++|+.+||+|+++++||+|+|+|+++|+.+++
T Consensus 187 vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyFRmtRDvA~rlg~~Kpali~s 266 (397)
T KOG2145|consen 187 VTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYFRMTRDVAPRLGYPKPALIHS 266 (397)
T ss_pred echhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCChHHHhhhhhhhhhCCCCcceeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHH
Q 022694 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 239 (293)
Q Consensus 160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~ 239 (293)
.++|.|+|.+.|||.|+|||+|||+|++++|++||.+|||+|++.++|+|++.||||+|++.|+||++|.+++.++|+++
T Consensus 267 tffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~kLeq~r 346 (397)
T KOG2145|consen 267 TFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDKLEQIR 346 (397)
T ss_pred hhchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCCC
Q 022694 240 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 290 (293)
Q Consensus 240 ~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~~ 290 (293)
.+|.+|.|..|++|+.+.+.|.++++.+|++|++++++.|++++..+++++
T Consensus 347 ~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtde~ld~Fm~~r~l~~ 397 (397)
T KOG2145|consen 347 KDYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTDETLDAFMDPRKLSF 397 (397)
T ss_pred hhccccccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCcccCCC
Confidence 999999999999999999999999999999999999999999999988763
No 4
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.3e-69 Score=509.63 Aligned_cols=274 Identities=37% Similarity=0.613 Sum_probs=251.2
Q ss_pred cchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheee
Q 022694 2 FTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 81 (293)
Q Consensus 2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t 81 (293)
++ +|||+ +|+.++|+||||||++++..+++++++++++++++|+|||+||+|++||.||+|++ ++..++.+++.+|
T Consensus 89 ~~-~~lQ~-~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~~--~~~l~~~l~~~~t 164 (368)
T PRK12285 89 EL-KWHQE-FGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENIK--VYDLAFELAKKVN 164 (368)
T ss_pred HH-HHHHh-cCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchHH--HHHHHHHHHhhCc
Confidence 45 78999 69999999999999998668999999999999999999999999999999999974 7788889999999
Q ss_pred ecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCcc----CCCCcccc
Q 022694 82 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI----GYHKPALI 157 (293)
Q Consensus 82 ~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~----n~~~p~~l 157 (293)
++++++.+|++++.|+|+++||+|||||+|++.+.. .+++ |+||||+||+||+|+||++|+|| |+++|.++
T Consensus 165 ~~~l~r~~~f~~~~~~g~~~YP~lQaADil~~~~~~--~~~~---~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P~~l 239 (368)
T PRK12285 165 FSELKAIYGFTGETNIGHIFYPATQAADILHPQLEE--GPKP---TLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPSST 239 (368)
T ss_pred HHHHHHhhCCCCCCchhhhhhhHHHHHHHHhhcccc--cCCc---eEEEeccchHHHHHHHHHHHHHHhhhcCCCCchhH
Confidence 999999999988899999999999999544332221 2555 79999999999999999999999 78999999
Q ss_pred cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeee-cChHHHH
Q 022694 158 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELE 236 (293)
Q Consensus 158 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~e 236 (293)
+++++|||+| +|||||+|+|+|+|+|+|++|++||++ |+||++.+.+++++.||||++|++++|+++|. .++++++
T Consensus 240 ~~~~lpgL~G--~KMSkS~~~s~I~L~D~p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~e 316 (368)
T PRK12285 240 YHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELK 316 (368)
T ss_pred hhhcccCCCC--CcCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHH
Confidence 9999999999 699999998999999999999999999 99999999888999999999999999999986 4678999
Q ss_pred HHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCC
Q 022694 237 HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288 (293)
Q Consensus 237 ei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~ 288 (293)
+++++|++|+++|++||+.|++.|+++|+|+|+|++++++ .|++++...++
T Consensus 317 ei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~~~-~~~~~~~~~~~ 367 (368)
T PRK12285 317 EIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEARE-ILEKYLYDGKL 367 (368)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccC
Confidence 9999999999999999999999999999999999999999 89998877653
No 5
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.6e-67 Score=491.13 Aligned_cols=264 Identities=26% Similarity=0.348 Sum_probs=237.9
Q ss_pred HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchh--hh-----hhHHh
Q 022694 5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FY-----KNMVK 75 (293)
Q Consensus 5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~--~~-----~~~~~ 75 (293)
+| ||++ +.++|+||||||+|++ .+++++++++++++++|+|||+||+|++||.||+|++|. +| ..+.+
T Consensus 25 ~~~~lQ~~--~~~~~~IaD~ha~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~~~el~~~l~~~~~~~~ 101 (333)
T PRK00927 25 NWVELQDE--YECFFCIADLHALTVP-QDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPEHAELAWILNCITPLGE 101 (333)
T ss_pred HHHHHHhc--CCeEEEEecHHHHhCC-CCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCchhHHHHHHHHhhhhHHH
Confidence 67 9995 6677888999999975 699999999999999999999999999999999999871 22 25789
Q ss_pred hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC----
Q 022694 76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY---- 151 (293)
Q Consensus 76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~---- 151 (293)
|+|++++++.... +.++.++|+++||+|||| |||.+++| +||||.||+||+||||++|+|||+
T Consensus 102 l~r~~~~k~~~~~--~~~~~~~g~~~YP~lQaa--------Dil~~~~d---ivpvG~DQ~~h~elaRdia~~~n~~~~~ 168 (333)
T PRK00927 102 LERMTQFKDKSAK--QKENVSAGLFTYPVLMAA--------DILLYKAD---LVPVGEDQKQHLELTRDIARRFNNLYGE 168 (333)
T ss_pred HHhhhhHHHHHhc--cCCCCCcHhhhcHHHHHH--------HHHhcCCC---EEeeccchHHHHHHHHHHHHHhhhhccc
Confidence 9999999987543 246789999999999999 89999995 799999999999999999999995
Q ss_pred --CCccccc---ccccccccCCccccccCCCC--ceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeeccee
Q 022694 152 --HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 224 (293)
Q Consensus 152 --~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~ 224 (293)
++|..++ +++||||+|+++|||||+++ |+|+|+|+|++|++||++ |+||+..+.+++++.|++|++|++++|
T Consensus 169 ~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~-a~td~~~~~~~~~~~~~~p~~~~l~~~ 247 (333)
T PRK00927 169 VFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLLTI 247 (333)
T ss_pred cCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHh-CCCCCCcccccccCCCCCCccccHHHH
Confidence 5787665 38999999987799999986 899999999999999999 999998877777889999999999999
Q ss_pred eeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694 225 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 287 (293)
Q Consensus 225 l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~ 287 (293)
+++|+ ++++++++++|.+|+++|++||+.||+.|+++|+|+|+||++++++ +|+++|..|.
T Consensus 248 ~~~~~--~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~~G~ 310 (333)
T PRK00927 248 YSALS--GESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILAEGA 310 (333)
T ss_pred HHHhC--CCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 99994 6789999999999999999999999999999999999999999876 9999998764
No 6
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=8.7e-66 Score=481.50 Aligned_cols=263 Identities=26% Similarity=0.363 Sum_probs=233.4
Q ss_pred HHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHhhhh
Q 022694 6 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVAK 78 (293)
Q Consensus 6 ~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~r 78 (293)
|||++ |+ ++|+||||||++++..+++++++++++++++|+|||+||+|++||.||+|+++ |+|. ++.++.|
T Consensus 29 ~lQ~~-~~-~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~e~~~l~~~l~~~~~~~~l~r 106 (333)
T PRK12282 29 ALQNE-HE-QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFIQSQIPELAELTMYYMNLVTVARLER 106 (333)
T ss_pred HHHhC-CC-EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEECCcchHHHHHHHHHHhhchHHHHhh
Confidence 69996 44 68888999999975589999999999999999999999999999999999876 6665 4679999
Q ss_pred eeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC--CCccc
Q 022694 79 CVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--HKPAL 156 (293)
Q Consensus 79 ~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~--~~p~~ 156 (293)
+++++++....++.++.++|+++||+|||| |||.+++| +||||.||+||+||||++|+|||+ .+|..
T Consensus 107 ~~~~k~~~~~~~~~~~~~~g~l~YP~lqaa--------DIl~~~~d---~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~ 175 (333)
T PRK12282 107 NPTVKTEIAQKGFGRSIPAGFLTYPVSQAA--------DITAFKAT---LVPVGDDQLPMIEQTREIVRRFNSLYGTDVL 175 (333)
T ss_pred chHHHHHHhccCCCCCCcchhhcchHHHHH--------HHHhhCCC---EEEeccccHHHHHHHHHHHHHHhhhcCCccc
Confidence 999998766555567789999999999999 89999995 899999999999999999999993 33332
Q ss_pred -----c--cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeee
Q 022694 157 -----I--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL 229 (293)
Q Consensus 157 -----l--~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 229 (293)
+ .+++||||+|+ +|||||+++ +|+|+|+|++|++||++ |+||+.. .+++.+++|+++++++|+++|.
T Consensus 176 ~~p~~~~~~~~~i~~L~g~-~KMSKS~~~-~I~L~D~pe~I~kKI~~-A~td~~~---~~~~~~~~~~~~~l~~~~~~f~ 249 (333)
T PRK12282 176 VEPEALLPEAGRLPGLDGK-AKMSKSLGN-AIYLSDDADTIKKKVMS-MYTDPNH---IRVEDPGKVEGNVVFTYLDAFD 249 (333)
T ss_pred cCchhcccCCCcccCCCCC-CcCCCCCCC-eeeeeCCHHHHHHHHHh-CcCCCCC---ccCCCCCCCCcChHHHHHHHhC
Confidence 2 36899999985 799999975 99999999999999999 9998743 3467899999999999999996
Q ss_pred cChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694 230 EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 287 (293)
Q Consensus 230 ~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~ 287 (293)
.+++++++++++|.+|+++|++||+.|++.|+++|+|+|+||+++.++ +|+++|..+.
T Consensus 250 ~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~vl~~G~ 309 (333)
T PRK12282 250 PDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEILKAGS 309 (333)
T ss_pred CCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999876 8999998764
No 7
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.5e-66 Score=481.09 Aligned_cols=259 Identities=17% Similarity=0.234 Sum_probs=229.8
Q ss_pred HHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHhhhh
Q 022694 6 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVAK 78 (293)
Q Consensus 6 ~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~r 78 (293)
|+|+.+|+.++|+||||||+|. ..+++++++++++++++|+|||+||+|++||.||++++| |.+. .+++|+|
T Consensus 30 ~lq~~~~~~~~~~IADlHalt~-~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~~~eL~~il~~~t~~g~L~R 108 (332)
T PRK12556 30 QMAKNYEGKALYFIADYHALNA-VHDPEQFRSYTREVAATWLSLGLDPEDVIFYRQSDVPEIFELAWILSCLTPKGLMNR 108 (332)
T ss_pred HHHHhcCCeEEEEEechhhccC-CCCHHHHHHHHHHHHHHHhheeecccceEEEECCCchHHHHHHHHHHccchHHHHHh
Confidence 4888789888888999999985 489999999999999999999999999999999999987 2233 3789999
Q ss_pred eeeecceeeec-----cccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC---
Q 022694 79 CVTYNKVVGIF-----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--- 150 (293)
Q Consensus 79 ~~t~~~~~~~~-----g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n--- 150 (293)
+++||++.... |+.++.++|+++||+|||| |||.|++| +||||+||+||+||||++|+|||
T Consensus 109 ~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAA--------DIl~~~~d---~VpvG~DQ~qhleLtRdiA~rfn~~y 177 (332)
T PRK12556 109 AHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAA--------DILLFQAT---HVPVGKDQIQHIEIARDIATYFNHTF 177 (332)
T ss_pred ccHHHHHHhhhhhhccccCCCCcchhhhchHHHhh--------hhhhccCC---EEEeccccHHHHHHHHHHHHHHHHhc
Confidence 99999886532 2345679999999999999 89999995 89999999999999999999999
Q ss_pred ---CCCcccc---cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeeccee
Q 022694 151 ---YHKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 224 (293)
Q Consensus 151 ---~~~p~~l---~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~ 224 (293)
+++|..+ +++++|||+| +|||||++| +|+|+|+|++|++||++ |+||+... +.+++|++||+++|
T Consensus 178 g~~f~~P~~~~~~~~~~l~gLdg--~KMSKS~~n-~I~L~D~p~~I~kKI~k-a~Td~~~~-----~~~~~p~~~~l~~i 248 (332)
T PRK12556 178 GDTFTLPEYVIQEEGAILPGLDG--RKMSKSYGN-VIPLFAEQEKLRKLIFK-IKTDSSLP-----NEPKDPETSALFTI 248 (332)
T ss_pred cccCCCceeccccccccccCCCC--CCCCCCCCC-cccccCCHHHHHHHHHH-hccCCCcc-----cCCCCcchhHHHHH
Confidence 5778766 5899999998 599999975 89999999999999999 99998642 35789999999999
Q ss_pred eeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694 225 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 287 (293)
Q Consensus 225 l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~ 287 (293)
+++|.. ++++++++++|.+ +++|++||+.||+.|+++|+|||+|++++.++ +|+++|+.|.
T Consensus 249 ~~~~~~-~~~~eei~~~y~~-~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~~~~il~~G~ 311 (332)
T PRK12556 249 YKEFAT-EEEVQSMREKYET-GIGWGDVKKELFRVVDRELAGPREKYAMYMNEPSLLDEALEKGA 311 (332)
T ss_pred HHHHCC-chhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 999853 4689999999987 58999999999999999999999999999876 8999998763
No 8
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.8e-65 Score=483.76 Aligned_cols=261 Identities=21% Similarity=0.281 Sum_probs=229.9
Q ss_pred HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694 5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK 75 (293)
Q Consensus 5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~ 75 (293)
+| ||+ |+.++|+||||||+|. ..+++++++++++++++|+|||+||+|++||.||++++| |.+. .+++
T Consensus 70 ~~v~lQ~--~~~~~~~IADlHAlt~-~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~ 146 (389)
T PLN02886 70 NWVALQE--TYDTFFCVVDLHAITL-PHDPRELGKATRSTAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGW 146 (389)
T ss_pred HHHHHhc--cCCEEEEEecHHHhhC-CCCHHHHHHHHHHHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHH
Confidence 56 998 5556777899999997 489999999999999999999999999999999999987 3333 3789
Q ss_pred hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC----
Q 022694 76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY---- 151 (293)
Q Consensus 76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~---- 151 (293)
|+|++|||++.+..+ .++.++|+|+||+|||| |||+|++| +||||+||+||+|||||+|+|||+
T Consensus 147 L~R~~q~K~k~~~~~-~~~~~~gll~YPvLqAA--------DILl~~a~---~VPVG~DQ~qH~eLtRdiA~rfN~~y~~ 214 (389)
T PLN02886 147 LNKMIQFKEKSRKAG-DENVGVGLLTYPVLMAS--------DILLYQAD---LVPVGEDQKQHLELTRDIAERVNNLYGG 214 (389)
T ss_pred HHhcchHHHHHHhcC-CCCCChHhhhChHHHHh--------hhhhcCCC---eEEEccchHHHHHHHHHHHHHHhhhccc
Confidence 999999999987654 35689999999999999 89999996 799999999999999999999985
Q ss_pred --------------CCccccc---ccccccccCCccccccCCCC--ceeeeccChHHHHHHhhhcccCCCchhHHHHHHc
Q 022694 152 --------------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKL 212 (293)
Q Consensus 152 --------------~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~ 212 (293)
++|..++ +++||||+|+++|||||+|+ |+|+|+|+|++|++||++ |+||+...++ ++.
T Consensus 215 ~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~e~I~kKI~~-a~TD~~~~i~--~~~ 291 (389)
T PLN02886 215 RKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKR-CKTDSFPGLE--FDN 291 (389)
T ss_pred cccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCHHHHHHHHhc-CCCCCCCCcc--CCC
Confidence 3565555 45899999887899999985 799999999999999999 9999986543 467
Q ss_pred CCCeeeeecceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694 213 GANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 287 (293)
Q Consensus 213 ~~~p~~~~~~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~ 287 (293)
+++|++++++.+|..+ ++.++++++++|. .+++++||+.|++.|+++|+|||+||+++.+| ||+++|.++.
T Consensus 292 p~~p~v~nl~~i~~~~--~~~~~eei~~~~~--~~~~g~~K~~Lae~I~~~L~Pirer~~~l~~d~~~l~~iL~~Ga 364 (389)
T PLN02886 292 PERPECNNLLSIYQLV--TGKTKEEVLAECG--DMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPSYLDSVLKEGA 364 (389)
T ss_pred CCCcccccHHHHHHHc--cCCCHHHHHHHhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 7899999999999988 4678999999997 36999999999999999999999999999876 9999998763
No 9
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.2e-65 Score=482.39 Aligned_cols=258 Identities=18% Similarity=0.180 Sum_probs=224.3
Q ss_pred HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHhhhhe
Q 022694 7 LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVAKC 79 (293)
Q Consensus 7 lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~r~ 79 (293)
+|+..|+.++++||||||+|. ..+++.+++++++++++|+|||+||+|++||.||++++| |.+. .+++|+|+
T Consensus 30 lq~q~~~~~~~~IADlHAlT~-~~dp~~lr~~~~e~aa~~LA~GlDPek~~if~QSdvpeh~EL~wiL~~it~~g~L~Rm 108 (431)
T PRK12284 30 ASRQPGVESFYFLADYHALIK-CDDPARIQRSTLEIAATWLAAGLDPERVTFYRQSDIPEIPELTWLLTCVAGKGLLNRA 108 (431)
T ss_pred HHHhCCCcEEEEeechhhccC-CCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCcchhHHHHHHHHHhhhhHHHHHhh
Confidence 665457788888899999995 489999999999999999999999999999999999987 3333 47999999
Q ss_pred eeecceeeec---ccc--CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC---
Q 022694 80 VTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--- 151 (293)
Q Consensus 80 ~t~~~~~~~~---g~~--~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~--- 151 (293)
++||++.... |+. ++.++|+|+||+|||| |||+|++| +||||.||+||+|||||||+|||+
T Consensus 109 ~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAA--------DILly~ad---~VPVG~DQ~qHlELaRdIA~rFN~~yg 177 (431)
T PRK12284 109 HAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAA--------DILMFNAH---KVPVGRDQIQHIEMARDIAQRFNHLYG 177 (431)
T ss_pred hHHHHHHHhhhccccCcccCcchHHhhchHHHHh--------hhhhcCCC---EEEEcchhHHHHHHHHHHHHHHhhhcC
Confidence 9999875332 222 3479999999999999 89999996 799999999999999999999984
Q ss_pred ----CCccccc---ccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeeccee
Q 022694 152 ----HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 224 (293)
Q Consensus 152 ----~~p~~l~---~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~ 224 (293)
+.|..+. +++||||+| +|||||++ |+|+|+|+|++|++||++ |+||+..+. .+++|++||++.|
T Consensus 178 ~~~F~~Pe~~i~~~~~~I~gLdg--~KMSKS~~-n~I~L~Ds~~~I~kKI~~-A~TDs~~~~-----~~~~pe~snLl~i 248 (431)
T PRK12284 178 GEFFVLPEAVIEESVATLPGLDG--RKMSKSYD-NTIPLFAPREELKKAIFS-IVTDSRAPG-----EPKDTEGSALFQL 248 (431)
T ss_pred CcccCCCccccccccccccCCCC--ccccCCCC-CEeeecCCHHHHHHHHhc-CCCCCCCCC-----CCCCCCcchHHHH
Confidence 3454433 689999998 69999996 499999999999999999 999987532 3588999999999
Q ss_pred eeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694 225 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 287 (293)
Q Consensus 225 l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~ 287 (293)
+++|+. .+++++++++|.+| ++|++||+.|++.|+++|+|||+||+++.++ ||++||.++.
T Consensus 249 ~~~~~~-~~~~eel~~~~~~g-~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~l~~iL~~Ga 311 (431)
T PRK12284 249 YQAFAT-PEETAAFRQALADG-IGWGDAKQRLFERIDRELAPMRERYEALIARPADIEDILLAGA 311 (431)
T ss_pred HHHhCC-cchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 999853 46799999999844 9999999999999999999999999999886 8999998763
No 10
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=1.7e-64 Score=472.47 Aligned_cols=263 Identities=35% Similarity=0.531 Sum_probs=227.8
Q ss_pred HHHHhhcCCcEEEEeecccchhhccc-ChHHHHHHHHhcccchhhcccCCCceeEeecccccchh----hhh---hHHhh
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA----FYK---NMVKV 76 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~~-~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~----~~~---~~~~l 76 (293)
+++|. .|+.++|+||||||+|+++. +++.++.++++++++|+|||+||+|++||.||+|++++ .+. ++.+|
T Consensus 27 ~~~~q-~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~e~~el~~~l~~~~t~~~l 105 (328)
T TIGR00233 27 KWLQQ-FGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYPEHYELAWLLSCQVTFGEL 105 (328)
T ss_pred HHHHh-CCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcHHHHHHHHHHHccCCHHHH
Confidence 45775 59999999999999997532 78899999999999999999999999999999998652 111 35666
Q ss_pred hheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC------
Q 022694 77 AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG------ 150 (293)
Q Consensus 77 ~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n------ 150 (293)
.|++++++... .++.++|+|+||+|||| |||.+++| +||||.||+||+||||++|+|||
T Consensus 106 ~r~~~~k~k~~----~~~~~~g~l~YP~lqaa--------Dil~~~~d---~vpvG~DQ~~h~elaRdia~r~n~~~~~~ 170 (328)
T TIGR00233 106 KRMTQFKDKSQ----AENVPIGLFSYPVLQAA--------DILLYQAD---LVPVGIDQDQHLELTRDLAERFNKKFKNF 170 (328)
T ss_pred HhccCcchhcc----CCCCCchhhcchHHHHh--------hhhhcCCC---eeecccccHHHHHHHHHHHHHhhhhcCcc
Confidence 77777766531 24579999999999999 89999996 79999999999999999999999
Q ss_pred CCCcccccc---cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCch-hHHHHHHcCCCeeeeecceeee
Q 022694 151 YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-SVELHRKLGANLEVDIPVKYLS 226 (293)
Q Consensus 151 ~~~p~~l~~---~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~-~~~~~~~~~~~p~~~~~~~~l~ 226 (293)
+++|.++++ |.||||+| +|||||+|||+|+|+|+|++|++||++ |+||++. +.+++++.+++|.++++++++.
T Consensus 171 f~~P~~l~~~~~~~l~gl~~--~KMSKS~~~s~I~L~D~~e~I~~KI~~-a~td~~~~~~~~~~~~~g~~~l~~i~~~~~ 247 (328)
T TIGR00233 171 FPKPESLISKFFPRLMGLSG--KKMSKSDPNSAIFLTDTPKQIKKKIRK-AATDGGRVTLFEHREKGGVPNLLVIYQYLS 247 (328)
T ss_pred cCCChhhhccccCCCCCCCC--CcCCCCCCCCeEeecCCHHHHHHHHHh-cCCCCCCCcccCcCCCCCCchHHHHHHHhh
Confidence 688988875 56777776 699999999999999999999999999 9999873 4444556778888888888888
Q ss_pred eeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhccc
Q 022694 227 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 286 (293)
Q Consensus 227 ~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~ 286 (293)
++..+++++++++++|.+|+++|++||+.|++.|+++|+|||+|++++.+++|+++|..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~~~~~~l~~g 307 (328)
T TIGR00233 248 FFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEEILDKILEPG 307 (328)
T ss_pred ccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 886656789999999999999999999999999999999999999999999999999875
No 11
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.9e-64 Score=471.74 Aligned_cols=262 Identities=19% Similarity=0.218 Sum_probs=228.3
Q ss_pred HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694 5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK 75 (293)
Q Consensus 5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~ 75 (293)
+| +|+ ++.++|+||||||+|++..+++.+++++++++++|+|||+||+|+.||.||++++| |.+. .+++
T Consensus 26 ~wv~lq~--~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v~eh~eL~wil~~~t~~~~ 103 (398)
T PRK12283 26 NWVKLQH--EYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKVPEHAELHLLLSMITPLGW 103 (398)
T ss_pred HHHHHhc--CCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCchHHHHHHHHHHhhccHHH
Confidence 67 455 55678888999999975469999999999999999999999999999999999987 3333 4899
Q ss_pred hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC----
Q 022694 76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY---- 151 (293)
Q Consensus 76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~---- 151 (293)
|.|++|+|++..+.+..++.++|+++||+|||| |||+|++| +||||.||+||+|||||||+|||+
T Consensus 104 L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAA--------DILl~~a~---iVPVG~DQ~qHleLaRdIA~rfN~~yg~ 172 (398)
T PRK12283 104 LERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSA--------DILIYRAG---LVPVGEDQVPHVEMTREIARRFNHLYGR 172 (398)
T ss_pred HHhhhHHHHHHhhhccccCCcchhhcCcHHHHH--------HHHhcCCC---EeeeccccHHHHHHHHHHHHHHHHhcCc
Confidence 999999999876532235679999999999999 89999995 799999999999999999999875
Q ss_pred ------------------------------------------------------------------------CCcccc--
Q 022694 152 ------------------------------------------------------------------------HKPALI-- 157 (293)
Q Consensus 152 ------------------------------------------------------------------------~~p~~l-- 157 (293)
+.|..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 252 (398)
T PRK12283 173 EPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKIILPEPQALLT 252 (398)
T ss_pred cccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCCcccCCCccccc
Confidence 233332
Q ss_pred cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHH
Q 022694 158 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEH 237 (293)
Q Consensus 158 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ee 237 (293)
.+++||||+| +|||||++ ++|+|+|+|++|++||++ |+||+.. +++..||+|++||+++|+++|+ ++++.++
T Consensus 253 ~~~~I~gLdg--~KMSKS~~-n~I~L~Ds~~~I~kKI~~-a~TDs~~---~~~~~~g~Pe~~nl~~i~~~~~-~~~~~~~ 324 (398)
T PRK12283 253 EASKMPGLDG--QKMSKSYG-NTIGLREDPESVTKKIRT-MPTDPAR---VRRTDPGDPEKCPVWQLHQVYS-DEETKEW 324 (398)
T ss_pred CCCcccCCCC--CcCCCCCC-CeeeCcCCHHHHHHHHHh-CCCCCcc---cccCCCCCCCcCHHHHHHHHhC-CChHHHH
Confidence 2589999988 69999976 599999999999999999 9998653 4567789999999999999994 3457899
Q ss_pred HHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhcccC
Q 022694 238 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVRP 287 (293)
Q Consensus 238 i~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~~ 287 (293)
+.++|++|+++|++||+.|++.|+++|+|||+|++++.++ +|+++|+.+.
T Consensus 325 i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~ 376 (398)
T PRK12283 325 VQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGC 376 (398)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876 8999998763
No 12
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8e-63 Score=437.86 Aligned_cols=263 Identities=21% Similarity=0.304 Sum_probs=234.5
Q ss_pred hHH--HHhhcC--CcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---h
Q 022694 4 NRY--LQDAFK--VPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---N 72 (293)
Q Consensus 4 ~k~--lQ~~~g--~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~ 72 (293)
.+| |||.++ ..+++.|+|+||+|. +.++.++|+++.++++.+||||+||+|+.+|.||++++| |.+. .
T Consensus 36 ~~Wv~LQ~~~d~~~~~~f~vvDlHaITv-p~dp~~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~Vpqh~el~WlLsslt~ 114 (347)
T KOG2713|consen 36 KPWVQLQNEYDKNILVLFSVVDLHAITV-PQDPAELRQATHDMAASLLACGIDPEKSSLFVQSDVPQHAELSWLLSSLTT 114 (347)
T ss_pred hHHHHHHHHhcCCceEEEEEeeceeecC-CCChHHHHHHHHHHHHHHHHhccCcccceeeeeccchHHHHHHHHHHhccc
Confidence 368 998754 457777899999998 577779999999999999999999999999999999987 3333 4
Q ss_pred HHhhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC-
Q 022694 73 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY- 151 (293)
Q Consensus 73 ~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~- 151 (293)
+++|+||++||+++.+.+ .++.++|+|+||+|||| |||+|++ |+||||+||.||+||+|++|++||.
T Consensus 115 mg~L~rm~Q~KeKs~~~~-~~~~~vGLftYPvLqAA--------DILLYks---ThVPVGeDQsQHleL~r~lA~~fN~~ 182 (347)
T KOG2713|consen 115 MGRLARMPQWKEKSERFK-VGDVPVGLFTYPVLQAA--------DILLYKS---THVPVGEDQSQHLELARHLAQAFNKT 182 (347)
T ss_pred hHHHHhhHHHHhhhhhhc-cCccceeeecchhHhhh--------hHhhhcc---ccccCCccHHHHHHHHHHHHHHHhhh
Confidence 899999999999998654 46789999999999999 8999999 5999999999999999999999995
Q ss_pred ------CCccccc---ccccccccCCccccccCCCC--ceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeee
Q 022694 152 ------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI 220 (293)
Q Consensus 152 ------~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~ 220 (293)
|.|..+. +.+|++|..|.+|||||+|| ++|+|+|+|+.|.+||+| |.||.... ..++++++|+++|
T Consensus 183 Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~k-a~TD~~~~--vtYd~~~RpgvsN 259 (347)
T KOG2713|consen 183 YGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKK-AQTDNTSG--VTYDPANRPGVSN 259 (347)
T ss_pred ccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHH-Hhcccccc--eeeCCccccchhH
Confidence 6776654 58999999999999999986 799999999999999999 99996543 3488999999999
Q ss_pred cceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694 221 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 286 (293)
Q Consensus 221 ~~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~ 286 (293)
+..+++.. ++.+.+|+.+.+++ ++++++|..||++|++.|+|||++++++..+ ||+++|+.+
T Consensus 260 Llni~aaV--t~~s~eeV~~~~a~--~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~~G 323 (347)
T KOG2713|consen 260 LLNIYAAV--TGKSIEEVVEESAN--MSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLEEG 323 (347)
T ss_pred HHHHHHHH--cCCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHHHh
Confidence 99999888 56789999998774 8999999999999999999999999999886 999999876
No 13
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=2e-62 Score=459.19 Aligned_cols=247 Identities=25% Similarity=0.354 Sum_probs=222.3
Q ss_pred HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch-hhhhhHHhhhheeeec
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYN 83 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t~~ 83 (293)
+|||+ +|+.++|+||||||+++++.+++++++++++++++|+|||+||+|+.||.||+|++| .||..+.+|++.+++.
T Consensus 55 ~~lq~-~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~ 133 (329)
T PRK08560 55 ADLQK-AGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLA 133 (329)
T ss_pred HHHHH-CCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHH
Confidence 67999 599999999999999986589999999999999999999999999999999999976 6888999999999999
Q ss_pred ceeee---cccc-CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694 84 KVVGI---FGFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 159 (293)
Q Consensus 84 ~~~~~---~g~~-~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~ 159 (293)
++.+. .++. ++.++|+|+||+|||| |||.+++| +||||.||+||+++||++|+|||+++|.++++
T Consensus 134 ~l~r~~~~~~~~~~~~~~g~l~YP~lqaa--------Dil~~~ad---~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~ 202 (329)
T PRK08560 134 RARRSMTIMGRRMEEPDVSKLVYPLMQVA--------DIFYLDVD---IAVGGMDQRKIHMLAREVLPKLGYKKPVCIHT 202 (329)
T ss_pred HHHHhhhhhcccCCCCCHHHHHHHHHHHH--------HHHHhCCC---EEEechhHHHHHHHHHHhhHhcCCCCceEEEc
Confidence 88874 2332 3459999999999999 89999996 79999999999999999999999999999999
Q ss_pred cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecC--------
Q 022694 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED-------- 231 (293)
Q Consensus 160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~-------- 231 (293)
++||||+|+++|||||+|+|+|+|+|+|++|++||++ |+||++ +|+.++++.|++++...
T Consensus 203 ~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I~~KI~k-A~t~~~-----------~~~~n~v~~~~~~~~~~~~~~~~~~ 270 (329)
T PRK08560 203 PLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRKIKK-AYCPPG-----------EVEGNPVLEIAKYHIFPRYDPFVIE 270 (329)
T ss_pred CccCCCCCCCCCCcCCCCCCeecccCCHHHHHHHHHh-ccCCCC-----------CcCCCcHHHHHHHHhhccccceEEe
Confidence 9999999987799999988899999999999999999 999763 45566777887776422
Q ss_pred ----------hHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022694 232 ----------DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 275 (293)
Q Consensus 232 ----------~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~ 275 (293)
++++++++++|++|+++|++||++||++|+++|+|||+++++-.
T Consensus 271 r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~ 324 (329)
T PRK08560 271 RPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLIEILEPVREYLEEGP 324 (329)
T ss_pred chhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 26789999999999999999999999999999999999998743
No 14
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=4.2e-60 Score=434.57 Aligned_cols=240 Identities=39% Similarity=0.588 Sum_probs=210.6
Q ss_pred HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchh----hhh---hHHhhh
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA----FYK---NMVKVA 77 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~----~~~---~~~~l~ 77 (293)
+|||++ |+.++|+|||+||+|++..+++++++++++++++|+|||+||+|++||.||++++|. .+. ++.+|.
T Consensus 25 ~~lQ~a-g~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~~~~~l~~~l~~~~~~~~l~ 103 (280)
T cd00806 25 VWLQEA-GYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVPEHYELAWLLSCVVTFGELE 103 (280)
T ss_pred HHHHhC-CCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcHHHHHHHHHHhCcCCHHHHH
Confidence 569996 999999999999999753599999999999999999999999999999999998651 121 356667
Q ss_pred heeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC------C
Q 022694 78 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG------Y 151 (293)
Q Consensus 78 r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n------~ 151 (293)
|+++|+++.+. .++.++|+++||+|||| |||.+++ |+||||.||+||+++||++|+||| +
T Consensus 104 r~~~fk~~~~~---~~~~~~g~~~YP~lqaa--------Dil~~~~---~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~ 169 (280)
T cd00806 104 RMTGFKDKSAQ---GESVNIGLLTYPVLQAA--------DILLYKA---CLVPVGIDQDPHLELTRDIARRFNKLYGEIF 169 (280)
T ss_pred hccchhhhhcc---CCCCcchhhcchHHHHh--------hhhhccC---CEEeeccccHHHHHHHHHHHHHhcccccccc
Confidence 77777665442 35789999999999999 8999998 589999999999999999999999 6
Q ss_pred CCcccccc--cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeee
Q 022694 152 HKPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL 229 (293)
Q Consensus 152 ~~p~~l~~--~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 229 (293)
++|..+++ ++||||+|+++|||||+++|+|+|+|+|++|++||++ |+||+..+ ++++.+++|++++++.|+++|.
T Consensus 170 ~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~-a~td~~~~--~~~~~~~~~~~~~l~~~~~~~~ 246 (280)
T cd00806 170 PKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMK-AATDGGRT--EHRRDGGGPGVSNLVEIYSAFF 246 (280)
T ss_pred CCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHh-ccCCCCCc--eecCCCCCCCcChHHHHHHHHh
Confidence 89999888 9999999987899999997899999999999999999 99998864 5588999999999999999875
Q ss_pred -cChHHHHHHHHhccCCCcccHHHHHHHHHHHHHH
Q 022694 230 -EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 263 (293)
Q Consensus 230 -~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~ 263 (293)
.+.++++++ ++|+.|++++++||+.||+.|+++
T Consensus 247 ~~~~~~~~~~-~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 247 NDDDEELEEI-DEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred CCCHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHhC
Confidence 345566666 899999999999999999999863
No 15
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.1e-58 Score=437.73 Aligned_cols=245 Identities=21% Similarity=0.301 Sum_probs=211.4
Q ss_pred HHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeecccc-cch--hhhhhHHhhhhee
Q 022694 6 YLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG--AFYKNMVKVAKCV 80 (293)
Q Consensus 6 ~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~--~~~~~~~~l~r~~ 80 (293)
+||++ |+.++|+||||||+++++ .++++++++++++++.|+|||+||+|+.||.||+| ++| .||..+..+++.+
T Consensus 93 ~lq~~-G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~ 171 (383)
T PTZ00126 93 KLTKA-GCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSF 171 (383)
T ss_pred HHHhC-CCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccC
Confidence 49994 999999999999999865 79999999999999999999999999999999985 454 6888888999999
Q ss_pred eecceeee---cccc--CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC-CCc
Q 022694 81 TYNKVVGI---FGFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKP 154 (293)
Q Consensus 81 t~~~~~~~---~g~~--~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~-~~p 154 (293)
|++++++. +++. ++.++|+|+||+|||| ||+.+++| +||||.||+||++||||+|++||+ ++|
T Consensus 172 tl~r~~r~~~~~~r~~~~~~~~g~l~YP~LQaa--------Dil~l~ad---ivpvG~DQ~~~~~LaRdia~~~~~~~~~ 240 (383)
T PTZ00126 172 NITRIKRCSQIMGRSEGDEQPCAQILYPCMQCA--------DIFYLKAD---ICQLGMDQRKVNMLAREYCDKKKIKKKP 240 (383)
T ss_pred CHHHHHhhhhhhccccCCCCCchhhhhhHHHhh--------hhhccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCc
Confidence 99888643 2332 3468999999999999 89999997 699999999999999999999996 678
Q ss_pred ccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee-------
Q 022694 155 ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF------- 227 (293)
Q Consensus 155 ~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~------- 227 (293)
.++++|+||||+++++|||||+||++|+|+|+|++|++|||+ |||+++.. ++||.+ .|+++
T Consensus 241 ~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~Dspe~I~kKI~k-A~t~p~~~-------~~npv~----~~~~~~~~~~~~ 308 (383)
T PTZ00126 241 IILSHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNRKIKK-AYCPPGVI-------EGNPIL----AYFKSIVFPAFN 308 (383)
T ss_pred eeecccccccCCCCCCCCCcCCCCCeecCCCCHHHHHHHHHh-CcCCCCCC-------CCCcch----hhhhhccccccc
Confidence 888999999996546899999999999999999999999999 99987532 355544 44432
Q ss_pred -ee-c---------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022694 228 -FL-E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 274 (293)
Q Consensus 228 -~~-~---------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~ 274 (293)
|. . ++.++++++++|++|.++|++||++||++|+++|+|||++++.-
T Consensus 309 ~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~p~dlK~~lae~i~~~L~PIRe~~~~~ 366 (383)
T PTZ00126 309 SFTVLRKEKNGGDVTYTTYEELEKDYLSGALHPGDLKPALAKYLNLMLQPVRDHFQNN 366 (383)
T ss_pred ceeEeccccccCccCcCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 21 0 23589999999999999999999999999999999999999854
No 16
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.1e-56 Score=443.17 Aligned_cols=253 Identities=18% Similarity=0.251 Sum_probs=214.8
Q ss_pred cCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeeccc-ccch--hhhhhHHhhhheeeecce
Q 022694 11 FKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFD-YVGG--AFYKNMVKVAKCVTYNKV 85 (293)
Q Consensus 11 ~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~-~~~~--~~~~~~~~l~r~~t~~~~ 85 (293)
.|+.++|+||||||+|+++ .+++.++.+++++++.|+|||+||+|+.||.||+ +++| .||..+..+++.+|+.++
T Consensus 63 ~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~ 142 (682)
T PTZ00348 63 AGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARI 142 (682)
T ss_pred CCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHH
Confidence 3889999999999999754 5889999999999999999999999999999997 6665 567767777777777666
Q ss_pred eee---ccccC-CccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC-CCccccccc
Q 022694 86 VGI---FGFTG-EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESS 160 (293)
Q Consensus 86 ~~~---~g~~~-~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~-~~p~~l~~~ 160 (293)
++. .|+.+ +.++|+++||+|||| |||.+++| +||||.||+||++|||++|++||. ++|.+++++
T Consensus 143 K~~~~~~g~~~~~i~~gll~YPvLQAA--------DIl~l~ad---ivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~ 211 (682)
T PTZ00348 143 KKCCTIMGKTEGTLTAAQVLYPLMQCA--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHH 211 (682)
T ss_pred HHHHHhhcccCCCCchHHHhhhHHHhh--------cccccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCceecccc
Confidence 653 34433 479999999999999 89999997 699999999999999999999995 578888899
Q ss_pred ccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCe----eeeecceeeeeeec------
Q 022694 161 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANL----EVDIPVKYLSFFLE------ 230 (293)
Q Consensus 161 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p----~~~~~~~~l~~~~~------ 230 (293)
+||||+|+++|||||+|+|+|+|+|+|++|++||++ ||||+..........+|+| +.++++.|++++..
T Consensus 212 ~LpGL~gg~~KMSKS~p~naI~L~Dspe~I~kKI~k-A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~ 290 (682)
T PTZ00348 212 MLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAV 290 (682)
T ss_pred cCcCCCCCCCcCCCCCCCCeecccCCHHHHHHHHHh-CCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchh
Confidence 999999766899999998899999999999999999 9999752111123456777 77888888877621
Q ss_pred ------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022694 231 ------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 275 (293)
Q Consensus 231 ------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~ 275 (293)
.++++++++++|.+|++||++||++|+++|+++|+|||+++++-.
T Consensus 291 ~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l~~~L~PIRe~~~~~~ 341 (682)
T PTZ00348 291 ATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEVNALLEPVRQHFASNP 341 (682)
T ss_pred cccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 126789999999999999999999999999999999999998654
No 17
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.7e-52 Score=382.46 Aligned_cols=225 Identities=24% Similarity=0.285 Sum_probs=200.9
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccC--CCceeEeecccccchhhhhhH
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYKNM 73 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gld--p~k~~i~~qs~~~~~~~~~~~ 73 (293)
+|||++ |+.++|+|||+||+++++ .+++++++|+++++++|+|+|+| |+|+.||.||+|+++.+|..+
T Consensus 26 ~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k~~i~~~s~~~~~l~~~~~ 104 (269)
T cd00805 26 RDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEKAKFVNNSDWLLSLYTLDF 104 (269)
T ss_pred HHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcceEEEEchHhhccCCHHHH
Confidence 679995 999999999999999865 79999999999999999999997 999999999999988888888
Q ss_pred Hhhhheeeecceeeeccc------cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCC
Q 022694 74 VKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 147 (293)
Q Consensus 74 ~~l~r~~t~~~~~~~~g~------~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~ 147 (293)
+++++.++++++.++.++ .++.++|+|+||+|||| ||+.++++ +||||.||++|++++||+|+
T Consensus 105 l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaa--------Di~~l~~~---l~~~G~DQ~~~i~~~rd~a~ 173 (269)
T cd00805 105 LRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAY--------DFVYLDVD---LQLGGSDQRGNITLGRDLIR 173 (269)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh--------hHHHHhCC---eeEecHHHHHHHHHHHHHHH
Confidence 889999998888876533 34679999999999999 89999884 79999999999999999999
Q ss_pred ccCCCCcccccccccccccCCccccccCCCCce-eeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeee
Q 022694 148 RIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS 226 (293)
Q Consensus 148 r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~-I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~ 226 (293)
|||+.+|..+++|+||||+| .|||||.+|+. |++.|+|++|++||++ |+|++ +++++.++.
T Consensus 174 r~~~~~~~~l~~~ll~~l~G--~KMSKS~~~~~~i~l~dsp~~i~~Ki~~-a~~~~---------------v~~~l~~~~ 235 (269)
T cd00805 174 KLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDPD---------------VLEFLKLFT 235 (269)
T ss_pred HhCCCCcEEEeeccccCCCC--CcccCCCCCcccccCCCCHHHHHHHHHc-CCcHH---------------HHHHHHHHH
Confidence 99999999999999999999 59999999866 7999999999999999 99961 233444444
Q ss_pred eeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHH
Q 022694 227 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 262 (293)
Q Consensus 227 ~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~ 262 (293)
++ +++++++++++|.+|.+ ++++|+.||+.|++
T Consensus 236 ~~--~~~~~eel~~~~~~~~~-~~~~K~~la~~i~~ 268 (269)
T cd00805 236 FL--DYEEIEELEEEHAEGPL-PRDAKKALAEELTK 268 (269)
T ss_pred cC--CHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Confidence 44 67899999999998877 99999999999986
No 18
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=5.9e-53 Score=389.79 Aligned_cols=245 Identities=30% Similarity=0.458 Sum_probs=214.0
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccc--hhhcccCCCceeEeecccccch-hhh---h---hH
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKD--IIACGFDVTKTFIFSDFDYVGG-AFY---K---NM 73 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~--~lA~Gldp~k~~i~~qs~~~~~-~~~---~---~~ 73 (293)
.|||+ .|+.++|+||||||+++++ .+++.++.++++++.. ++|+|+||+++.||.||+|+++ .++ . ..
T Consensus 30 ~~lq~-~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~~~~~~~~~~~l~~~~~~ 108 (292)
T PF00579_consen 30 IWLQK-AGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSDWPEHMELWWFLSDVARL 108 (292)
T ss_dssp HHHHH-TTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHHHHCHHHHHHHHHHHHBH
T ss_pred HHHHh-cCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCCcccccchhhhhcccccc
Confidence 68999 5999999999999999875 3799999999999999 9999999999999999999876 332 2 24
Q ss_pred HhhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCC-
Q 022694 74 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH- 152 (293)
Q Consensus 74 ~~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~- 152 (293)
.+|+|+.++++++++++.+++.++|+|+||+|||| |++.+++| +||||.||++|+++||++|+|+|+.
T Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaa--------D~~~l~~~---~~~~G~DQ~~~~~l~rd~a~k~~~~~ 177 (292)
T PF00579_consen 109 FSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAA--------DILLLKAD---LVPGGIDQRGHIELARDLARKFNYKE 177 (292)
T ss_dssp HHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHH--------HHHHTTHS---EEEEEGGGHHHHHHHHHHHHHHTHHS
T ss_pred cchhhhhhhcccccccccccCcceeeEEccccccc--------ceeeeccc---cccccchHHHHHHHHHHHHhhhcccc
Confidence 66888888888766665445789999999999999 89999996 7999999999999999999999997
Q ss_pred ---CcccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeee-cceeeeee
Q 022694 153 ---KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI-PVKYLSFF 228 (293)
Q Consensus 153 ---~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~-~~~~l~~~ 228 (293)
+|.++++|++|||+|. +|||||++|++|+|+|++++|++||++ |+|++.. +.++..+++|.+++ ++.++..+
T Consensus 178 ~~~~p~~l~~~~l~~l~G~-~KMSKS~~ns~I~L~d~~~~i~~Ki~~-a~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~ 253 (292)
T PF00579_consen 178 IFPKPAGLTSPLLPGLDGQ-KKMSKSDPNSAIFLDDSPEEIRKKIKK-AFCDPDR--ENPRLLKGRPFISPFLIERLEAF 253 (292)
T ss_dssp TSSS-EEEEETCBBSTTSS-SBTTTTTTGGS-BTTTTHHHHHHHHHH-SHTSTTS--HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccCchheeeccccccCCc-cccCccCCccEEEEeccchhHHHHHHH-HhhCCCc--ccccccccCCCCCHHHHHHHHHh
Confidence 9999999999999994 599999999999999999999999999 9999987 44566778888888 77777776
Q ss_pred ecCh--HHHHHHHHhccCCCcccHHHHHHHHHHHHHHHH
Q 022694 229 LEDD--AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 265 (293)
Q Consensus 229 ~~~~--~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~ 265 (293)
..+. .+++++.++|.+|.+|++++|++++++++++|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 254 HGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp HHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 4322 368999999999999999999999999999985
No 19
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.3e-48 Score=357.27 Aligned_cols=228 Identities=18% Similarity=0.194 Sum_probs=188.9
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc-c--------ChHHHHHHHHhcccchhhcccC--CCceeEeecccccch-hhhhh
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN-L--------SVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGG-AFYKN 72 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~-~--------~~~~i~~~~~~~~~~~lA~Gld--p~k~~i~~qs~~~~~-~~~~~ 72 (293)
+|||+ +|+.++++|||+||+++++ . +++++++|+++++++++|+|+| |++++||.||+|++. .++..
T Consensus 25 ~~lq~-~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k~~i~~ns~~~~~~~~~~l 103 (273)
T cd00395 25 RRFQH-AGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHIQF 103 (273)
T ss_pred HHHHH-CCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcceEEEEccccCCcccHHHH
Confidence 78999 5999999999999999864 2 8999999999999999999999 999999999999843 45555
Q ss_pred HHhhhheeeecceeeecccc----CCccccccccCCcccCCCCCCCCCcccCCCCccce-eccccccCCcccccccccCC
Q 022694 73 MVKVAKCVTYNKVVGIFGFT----GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAP 147 (293)
Q Consensus 73 ~~~l~r~~t~~~~~~~~g~~----~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~-~vpvG~DQ~~~~~laRdia~ 147 (293)
...+++.++++++.++.++. ++.++|+|+||+|||| ||+.++++..| +||||.||+||+++|||+|+
T Consensus 104 ~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaa--------D~l~l~~~~~~~~vp~G~DQ~~~i~l~rdla~ 175 (273)
T cd00395 104 LRDLGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAA--------DFLLLNTTEGCDIQPGGSDQWGNITLGRELAR 175 (273)
T ss_pred HHHHHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHH--------HHHHHhcccCCcEEEecHHHHHHHHHHHHHHH
Confidence 55566666666666655442 3689999999999999 78888773444 89999999999999999999
Q ss_pred ccC-CCCcccccccccccccCCccccccCCCCce--eeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeeccee
Q 022694 148 RIG-YHKPALIESSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 224 (293)
Q Consensus 148 r~n-~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~--I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~ 224 (293)
||| +++|..+++|+||||+| .|||||++|+. |+++|||++|++||++ |+ .++++.|
T Consensus 176 r~n~~~~p~~l~~p~l~~l~G--~KMSKS~~~~i~l~~~~dsp~~i~~ki~~-a~------------------d~~v~~~ 234 (273)
T cd00395 176 RFNGFTIAEGLTIPLVTKLDG--PKFGKSESGPKWLDTEKTSPYEFYQFWIN-AV------------------DSDVINI 234 (273)
T ss_pred HhCCCCCCeEEeeccccCCCC--CcCCCCCCCCccccccCCCHHHHHHHHHc-cc------------------HhHHHHH
Confidence 997 57899999999999999 49999998743 4479999999999999 86 1445677
Q ss_pred eeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHH
Q 022694 225 LSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 263 (293)
Q Consensus 225 l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~ 263 (293)
+++|+. +.+++++|++++.+|. +++++|+.||+.|+++
T Consensus 235 ~~~~t~~~~~ei~~i~~~~~~~~-~~~~~K~~La~~i~~~ 273 (273)
T cd00395 235 LKYFTFLSKEEIERLEQEQYEAP-GYRVAQKTLAEEVTKT 273 (273)
T ss_pred HHHHcCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Confidence 777653 5677888777776664 7799999999999863
No 20
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-47 Score=337.29 Aligned_cols=248 Identities=21% Similarity=0.231 Sum_probs=204.3
Q ss_pred HhhcCCcEEEEeecccchhhcc-cChHHHHHHHHhcccchh-h---cccCCCceeEeecccccch-hhhhhHHhhhheee
Q 022694 8 QDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDII-A---CGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVT 81 (293)
Q Consensus 8 Q~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~~~~~~~l-A---~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t 81 (293)
-+ +||.|.|++|||||+++|. .+++.+..++.++-..+. | .+++.++.-+..-|++... .|..++.++++.+|
T Consensus 62 lk-AGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~~ 140 (360)
T KOG2144|consen 62 LK-AGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNVT 140 (360)
T ss_pred Hh-cCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhcccccccCccchhhHHHHHhhcc
Confidence 35 4999999999999999876 888888888865555333 3 3555566543344555433 55668999999999
Q ss_pred ecceeeec--c--ccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccc
Q 022694 82 YNKVVGIF--G--FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALI 157 (293)
Q Consensus 82 ~~~~~~~~--g--~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l 157 (293)
.++.+++. + ..++..++.++||.|||+ |++.+++| ..++|.|||+.+.+||++++.+|+++|.++
T Consensus 141 ~hdak~agaevvkqve~plls~llYP~MQal--------De~~L~vD---~qfgGvDQRKIf~~A~eylp~l~ykKrihL 209 (360)
T KOG2144|consen 141 QHDAKKAGAEVVKQVENPLLSGLLYPGMQAL--------DEFYLEVD---AQFGGVDQRKIFVLAEEYLPDLGYKKRIHL 209 (360)
T ss_pred HhHHHHhhhhHHHhhcchhhhhhhhhhHHHh--------hHHHHhhh---HHhcCccHHHHHHHHHHhhhhhCcccceee
Confidence 99888763 2 246678899999999999 67778887 479999999999999999999999999999
Q ss_pred cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeee----ecceeeeeeec---
Q 022694 158 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD----IPVKYLSFFLE--- 230 (293)
Q Consensus 158 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~----~~~~~l~~~~~--- 230 (293)
++||||||++ ++|||||+|+|.|+|.|+|++|.+||++ |||.|+.. .+|+..+ ++|+++..+..
T Consensus 210 mnpMvPGL~q-~~KMSsSd~~SkIdllD~~~~V~kKI~k-AfCePg~v-------e~Ng~L~fvkyvvfP~~~e~~~~~i 280 (360)
T KOG2144|consen 210 MNPMVPGLAQ-GEKMSSSDPLSKIDLLDEPADVNKKIKK-AFCEPGNV-------EGNGCLSFVKYVVFPIFEEFGVEVI 280 (360)
T ss_pred cCCCCccccc-cCccccCCcccccccccCHHHHHHHHHH-hcCCCCCc-------CCCcHHHHHHHHHhhhHHhcCceee
Confidence 9999999996 4899999999999999999999999999 99998754 3787765 34555543220
Q ss_pred ----------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 022694 231 ----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 276 (293)
Q Consensus 231 ----------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~ 276 (293)
+++++|+++++|.+|.+||+|||+.|+.+|+++|+|||+.++...+
T Consensus 281 ~r~ek~GG~~tf~syed~e~~y~~~~lhPgDLK~~l~~alN~lL~~ir~~~~~~~~ 336 (360)
T KOG2144|consen 281 DRPEKFGGNKTFKSYEDIEKDYEEGELHPGDLKKGLEKALNELLQPIREEFSNWPE 336 (360)
T ss_pred cchhhcCCcchhHHHHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 3689999999999999999999999999999999999999887544
No 21
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.6e-45 Score=363.87 Aligned_cols=244 Identities=14% Similarity=0.178 Sum_probs=209.8
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeecccc-cch--hhhhhHHhhhhe
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG--AFYKNMVKVAKC 79 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~--~~~~~~~~l~r~ 79 (293)
.+|+...||.++|++|||||+++++ +++++|++.++++++.|.|+|+|++ +.+...|+. ..+ .||..+.+++|.
T Consensus 400 ~~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~ 478 (682)
T PTZ00348 400 DFIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARK 478 (682)
T ss_pred HHHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHh
Confidence 4577778999999999999999987 8999999999999999999999999 844444454 343 899999999999
Q ss_pred eeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694 80 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 159 (293)
Q Consensus 80 ~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~ 159 (293)
+|++++++++| .+..++|+++||+|||+ ||+.+++| +..+|+|||+.++||||++++-+ +|.++++
T Consensus 479 ~tl~r~~r~~g-~~~~~~s~~iYP~MQ~~--------Di~~L~~d---i~~gG~DQRki~mlAre~~~~~~--~~~~~~~ 544 (682)
T PTZ00348 479 NLLSHVEELYG-GELRNAGQVIAALMRVA--------TALMLSAS---HVISTSLDGGINEFAREYTKGRI--ECIQALE 544 (682)
T ss_pred ccHHHHHHHhc-CCcccHHHHHHHHHHHH--------HHHhcCCC---eeecChhHHHHHHHHHHhccccc--cchhhcC
Confidence 99999999986 45568999999999999 89999998 57899999999999999999654 3455778
Q ss_pred cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee---ee-c-----
Q 022694 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF---FL-E----- 230 (293)
Q Consensus 160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~---~~-~----- 230 (293)
+++|||.+|..+|++|+++|+|++.|++++|++||++ |||+++. .+||.++.+-.++.. |. .
T Consensus 545 ~~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki~k-A~Cpp~~--------~~Npvl~~~~y~~~~~~~~~i~R~e~~ 615 (682)
T PTZ00348 545 GRVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNE--------EANPVISVAQHLLAQQGALSIERGEAN 615 (682)
T ss_pred CCCccccccccccCCCCCCCeeeecCCHHHHHHHHHh-CCCCCCC--------CCCcHHHHHHHHhcCCCeEEEeccccc
Confidence 9999999777899999888999999999999999999 9998842 368887643222111 21 1
Q ss_pred ----ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 022694 231 ----DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 272 (293)
Q Consensus 231 ----~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~ 272 (293)
.+.++++++++|.+|.+||+|||.+++++|+++|+|+|++++
T Consensus 616 Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 616 GGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred CCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999999997
No 22
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.3e-44 Score=347.29 Aligned_cols=235 Identities=22% Similarity=0.217 Sum_probs=193.9
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccCCCc--eeEeecccccchhhhhhH
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTK--TFIFSDFDYVGGAFYKNM 73 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k--~~i~~qs~~~~~~~~~~~ 73 (293)
+|||+ .|+.++++||||||+++++ .+.+++++|+..+ ...+|+|+||++ ++||.||+|+++..+..+
T Consensus 59 ~~lQ~-~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i-~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~~~ 136 (408)
T PRK05912 59 RRFQD-AGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETI-KEQLFKFLDFEKDGAEIVNNSDWLGKLNAIDF 136 (408)
T ss_pred HHHHH-CCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHH-HHHHHHhcCcCcCcEEEEECCCcCCcccHHHH
Confidence 77999 5999999999999999753 4788899999765 556699999999 999999999987555555
Q ss_pred Hh-hhheeeecceeee------ccccCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccccCCcccccc
Q 022694 74 VK-VAKCVTYNKVVGI------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMT 142 (293)
Q Consensus 74 ~~-l~r~~t~~~~~~~------~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~~~~la 142 (293)
++ +++.++++++.++ ++..++.++|+|+||+|||| |++.+ +++ ++|||.||++|++++
T Consensus 137 l~~v~~~~~v~~m~~~~~~k~r~~~~~~is~~ef~Yp~LQa~--------D~l~l~~~~~~~---i~~gG~DQ~~ni~~g 205 (408)
T PRK05912 137 LRDLGKHFTVNRMLERDDFKKRLREGQGISFTEFLYPLLQGY--------DFVALNKRYGCD---LQLGGSDQWGNILSG 205 (408)
T ss_pred HHHHhhhccHHHHhhcchHHHHhccCCCCchhhhhhHHHHHh--------hHHHHhccCCCC---EEeccHHHHHHHHHH
Confidence 55 6667776666543 22235689999999999999 78888 885 689999999999999
Q ss_pred cccCCccCCCCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHHcCCCeeee
Q 022694 143 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVD 219 (293)
Q Consensus 143 Rdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~ 219 (293)
||+|+|||..++..++.|+|||++| +|||||. +++|+|+| ||+++++||++ + + +++++
T Consensus 206 rdla~r~~~~~~~~l~~plL~~~~G--~KMsKS~-~naI~L~d~~tsp~~i~qki~~-~-~--------------D~~v~ 266 (408)
T PRK05912 206 RDLQRRYGGKPQFGLTMPLLTGLDG--KKMGKSE-GNAVWLDEEKTSPYEMYQKWMN-I-S--------------DADVW 266 (408)
T ss_pred HHHHHHhCCCCeEEEecCCcCCCCC--CcccCCC-CCceeCCCCCCCHHHHHHHHhc-C-C--------------hHHHH
Confidence 9999999987778888999999998 7999998 46999999 99999999999 5 1 22334
Q ss_pred ecceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022694 220 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 274 (293)
Q Consensus 220 ~~~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~ 274 (293)
.++.++.++ +.+++++++++|++|. +++++|+.||+.|++++++..+..+..
T Consensus 267 ~~l~~~t~~--~~~ei~~l~~~~~~g~-~~~~~Kk~LA~~v~~~lhg~~~~~~a~ 318 (408)
T PRK05912 267 RYLKLLTFL--SLEEIEELEEELAEGP-NPREAKKVLAEEITALVHGEEAAEAAE 318 (408)
T ss_pred HHHHHHhcC--CHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 334444433 6788999999998887 999999999999999999977665543
No 23
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-43 Score=340.61 Aligned_cols=237 Identities=19% Similarity=0.188 Sum_probs=198.6
Q ss_pred cchHHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhh
Q 022694 2 FTNRYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN 72 (293)
Q Consensus 2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~ 72 (293)
++ +|||+ +|+.++|+|||+||+++++ .+.+++++|+..+.+++.+ |+||++++|+.||+|.++..+..
T Consensus 57 ~l-~~lq~-~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~ 133 (410)
T PRK13354 57 KL-KRFQD-AGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIFK-LFDFEKTEIVNNSDWLSKLNLID 133 (410)
T ss_pred HH-HHHHH-cCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHHH-hcCccceEEEECccccccccHHH
Confidence 35 78999 5999999999999999753 5788999999988888877 99999999999999998644454
Q ss_pred HH-hhhheeeecceee------eccccCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccccCCccccc
Q 022694 73 MV-KVAKCVTYNKVVG------IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRM 141 (293)
Q Consensus 73 ~~-~l~r~~t~~~~~~------~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~~~~l 141 (293)
++ .+++++|++++.+ +++..++.++|+|+||+|||| |++.+ +++ ++|||.||++|+++
T Consensus 134 ~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~--------D~~~l~~~~~~~---iq~gG~DQ~~ni~~ 202 (410)
T PRK13354 134 FLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAY--------DFVHLNRKEDVD---LQIGGTDQWGNILM 202 (410)
T ss_pred HHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhh--------hHHHHhccCCCC---EEEecHHHHHHHHH
Confidence 44 4666666655543 333234678899999999999 78888 775 68999999999999
Q ss_pred ccccCCccCCCCcccccccccccccCCccccccCCCCceeeeccC---hHHHHHHhhhcccCCCchhHHHHHHcCCCeee
Q 022694 142 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS---AKAIKNKINKYAFSGGQESVELHRKLGANLEV 218 (293)
Q Consensus 142 aRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~---~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~ 218 (293)
+||+++|+|..+|..++.|+|+|++| .|||||.+| +|+|+|+ |+++++||++ + +|
T Consensus 203 grdl~~r~~~~~~~~lt~PlL~g~dG--~KMsKS~~n-aI~L~d~~tsp~~i~qki~~-~-~D----------------- 260 (410)
T PRK13354 203 GRDLQRKLEGEEQFGLTMPLLEGADG--TKMGKSAGG-AIWLDPEKTSPYEFYQFWMN-I-DD----------------- 260 (410)
T ss_pred HHHHHHHhCCCCceEeccCCccCCCC--CccCCCCCC-ceeccCCCCCHHHHHHHHHc-C-Ch-----------------
Confidence 99999999998899999999999999 499999875 9999999 9999999999 5 11
Q ss_pred eecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022694 219 DIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 275 (293)
Q Consensus 219 ~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~ 275 (293)
+.++.|+++|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+...
T Consensus 261 ~~v~~~l~~~t~l~~~ei~~l~~~~~~~~-~~~~~Kk~LA~~v~~~vhg~~~~~~a~~ 317 (410)
T PRK13354 261 RDVVKYLKLFTDLSPDEIDELEAQLETEP-NPRDAKKVLAEEITKFVHGEEAAEEAEK 317 (410)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 233678888764 6789999999999875 5999999999999999999888766543
No 24
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=2.5e-36 Score=287.29 Aligned_cols=216 Identities=22% Similarity=0.176 Sum_probs=181.6
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccCCCceeEeecccccch-hhhhhHH
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMV 74 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~ 74 (293)
+|||+ .|+.++|+|||+||+++++ .+.+++++|+ +.++.++|+|+||+++.|+.||+|... .|+..+.
T Consensus 56 ~~lq~-~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~ 133 (377)
T TIGR00234 56 RDFQQ-AGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIR 133 (377)
T ss_pred HHHHH-CCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHHhCChhheEEEECchhcCcCCHHHHHH
Confidence 77999 4999999999999999864 4566777777 678889999999999999999999864 5777777
Q ss_pred hhhheeeecceeeeccc----cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC
Q 022694 75 KVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 150 (293)
Q Consensus 75 ~l~r~~t~~~~~~~~g~----~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n 150 (293)
++++.+|++++.++.++ .++.++++|+||+|||+ |++.+++| ++|||.||++|++.+|++|++++
T Consensus 134 ~~~~~~tv~~m~~~~~~~~R~~~~is~~ef~YpllQa~--------D~~~l~~d---i~~gG~DQ~~ni~~g~dLar~~~ 202 (377)
T TIGR00234 134 DLGKIFSVNRMLRRDAFSSRLERGISLSEFIYPLLQAY--------DFVYLNVD---LQIGGSDQWGNIRKGRDLIRRNL 202 (377)
T ss_pred HHhCceEHHHHHcccHHHHHHhcCCCchhhhhHHHHHH--------HHHHHcCC---eeEecchhHHHHHHHHHHHHHhc
Confidence 89999999999887654 24689999999999999 89999997 69999999999999999999999
Q ss_pred CCCcccccccccccccCCccccccCCC----------CceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeee
Q 022694 151 YHKPALIESSFFPALQGETGKMSASDP----------NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI 220 (293)
Q Consensus 151 ~~~p~~l~~~~lpgL~g~~~KMSkS~~----------~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~ 220 (293)
...+..+..|++++++| .|||||.+ +++|++.|+|+++.+||++ |||+..
T Consensus 203 ~~~~~~~t~pLl~~~dg--~KmgKS~~~~i~l~~~~~~~~i~~~d~~D~~~~Ki~k-~~t~~~----------------- 262 (377)
T TIGR00234 203 PSLGFGLTVPLLTPADG--EKMGKSGGGAVSLDEGKYDFYQFWINTPDEDVKKILK-LFTFLG----------------- 262 (377)
T ss_pred CCCceeeceeeecCCCC--CCccCCCCCcccCCccHhhhhhhhcCCcHHHHHHHHH-HcCCCc-----------------
Confidence 77777788899999997 69999953 3678888889999999999 999643
Q ss_pred cceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHH
Q 022694 221 PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH 267 (293)
Q Consensus 221 ~~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pi 267 (293)
.+++++|.+ . ..-++.+.|+.+|..|+..++.-
T Consensus 263 -----------~~ei~~l~~--~-~~~~~~~~q~~la~ei~~~vhg~ 295 (377)
T TIGR00234 263 -----------LEEIEALVE--L-KGPSPREVKENLAKEITKYVHGE 295 (377)
T ss_pred -----------HHHHHHHHH--h-cccCHHHHHHHHHHHHHHHhcCH
Confidence 235666654 2 22578999999999998888753
No 25
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.1e-31 Score=253.05 Aligned_cols=245 Identities=22% Similarity=0.229 Sum_probs=187.4
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc-cChHHHHHHHH----hcccchh-hcccCCC-ceeEeecccccch-hhhhhHHhh
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLAR----ENAKDII-ACGFDVT-KTFIFSDFDYVGG-AFYKNMVKV 76 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~----~~~~~~l-A~Gldp~-k~~i~~qs~~~~~-~~~~~~~~l 76 (293)
++||++ ||.++++|||+||+++++ ...+..+..++ ++++.+. ++|.+++ ++.+..+|+|... .|+..+.++
T Consensus 58 ~~fQ~a-Gh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~ 136 (401)
T COG0162 58 RRFQDA-GHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDV 136 (401)
T ss_pred HHHHHC-CCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHHHH
Confidence 789995 999999999999999987 77777776665 4444333 6687777 8988899999864 788888888
Q ss_pred hheeeecceeeeccc------cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC
Q 022694 77 AKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 150 (293)
Q Consensus 77 ~r~~t~~~~~~~~g~------~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n 150 (293)
++++|++++.++..+ ..++++.+|+||+|||+ |++.++.| +..||.|||.++.++||+++|+|
T Consensus 137 g~~~sv~rml~~d~~~~R~~~~~~is~~Ef~YpLmQay--------D~~~L~~d---lq~GG~DQ~~ni~~grdl~rr~g 205 (401)
T COG0162 137 GKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAY--------DFVYLNKD---LQLGGSDQWGNILAGRDLIRRLG 205 (401)
T ss_pred HhHccHHHHHHhhhHHHHhccCCCCchhhhhhHHHHHH--------HHHHHccc---hhcCChHHHHHHHHHHHHHHHhC
Confidence 899999999887432 23589999999999999 88989987 58999999999999999999999
Q ss_pred CCCcccccccccccccCCccccccCCCCceeeec-cC--hHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee
Q 022694 151 YHKPALIESSFFPALQGETGKMSASDPNSAIYVT-DS--AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 227 (293)
Q Consensus 151 ~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~-D~--~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~ 227 (293)
+++|.++++|+|+|++| +|||||..+ ++++. +. |-+++.++++ . + . ..+..|+..
T Consensus 206 ~~~~~~lt~PLL~~ldG--~KmgKs~~~-a~~~~s~~~Sp~~~yq~~~~-i--~----D------------~~~~~~~~~ 263 (401)
T COG0162 206 QKKVVGLTTPLLTGLDG--KKMGKSEGG-AVWLDSEKTSPYDFYQYWMN-I--E----D------------ADVKRFLKL 263 (401)
T ss_pred CCCeEEEEeccccCCCC--CcccccCCC-ceEccCCCCCcHhhhhcHhc-C--c----H------------HHHHHHHHH
Confidence 99999999999999999 389988765 33332 22 5555555555 1 0 0 111233333
Q ss_pred eec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhccc
Q 022694 228 FLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 286 (293)
Q Consensus 228 ~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~ 286 (293)
++. ..+++++|.+....+. ++.++|+.||..++...++-...++.... .++.+..+
T Consensus 264 ~t~l~~~eI~~i~~~~~~~~-~~r~~k~~LA~e~~~~~hG~~~a~~a~~~--~~~~F~~g 320 (401)
T COG0162 264 LTFLSLEEIEEIEKYVLKGP-EPREAKKLLAKEVTKLVHGEEAAEAAEEE--FEKLFSEG 320 (401)
T ss_pred hCcCChHHHHHHHHHhhcCC-ChHHHHHHHHHHhhHhhcCHHHHHHHHHH--HHHHHhcC
Confidence 322 2368899998777675 88899999999999999887666555433 55555554
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=5.3e-13 Score=124.47 Aligned_cols=229 Identities=15% Similarity=0.126 Sum_probs=157.2
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccch----------hhcccCCCceeEeeccccc
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDI----------IACGFDVTKTFIFSDFDYV 65 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~----------lA~Gldp~k~~i~~qs~~~ 65 (293)
-|+|.+ |+.++-+|++.+|-++++ ...+.+++|++.+..++ .-+|..-.+-+|+.+++|-
T Consensus 89 ~hfqr~-Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~ 167 (467)
T KOG2623|consen 89 IHFQRA-GHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWY 167 (467)
T ss_pred HHHHHc-CCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHHh
Confidence 478995 999999999999999864 22233555554332222 2234433456888998886
Q ss_pred ch----hhhhhH---HhhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccC-CC-CccceeccccccCC
Q 022694 66 GG----AFYKNM---VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS-GK-DHLRCLIPCAIDQD 136 (293)
Q Consensus 66 ~~----~~~~~~---~~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~-~~-ad~~~~vpvG~DQ~ 136 (293)
+. .|+..+ .++..|.....++.+...+++.+..+|+|-+|||+| .+. ++ -.+ |+..+|.||+
T Consensus 168 ~d~~llDFLa~vGrh~RvgsMLar~SV~~RLes~~GlSftEFtYQ~lQAYD--------fy~L~~~~g~-~~QlGGsDQw 238 (467)
T KOG2623|consen 168 KDIKLLDFLAEVGRHFRVGSMLARDSVKSRLESPNGLSFTEFTYQLLQAYD--------FYHLYENYGC-RFQLGGSDQW 238 (467)
T ss_pred hhchHHHHHHHhchhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHh--------HHHHHHhcCe-eEEecccccc
Confidence 53 455444 556666666667766655677889999999999994 442 22 222 5679999999
Q ss_pred cccccccccCCccCC--CCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHH
Q 022694 137 PYFRMTRDVAPRIGY--HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRK 211 (293)
Q Consensus 137 ~~~~laRdia~r~n~--~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~ 211 (293)
.|+..+-|+.+|+-. ..+..++.|+|.+-+| .|..||.+| +|||+- ||-.+++-.-+ +-- +.
T Consensus 239 GNitaG~dlI~ki~~~~~~vfGlT~PLlTsstG--~KlGKSaGn-AvWLdp~~tspy~lYQfF~~-~pD---d~------ 305 (467)
T KOG2623|consen 239 GNITAGTDLIRKIMPIQAFVFGLTFPLLTSSTG--AKLGKSAGN-AVWLDPSKTSPYHLYQFFAS-LPD---DD------ 305 (467)
T ss_pred cccchHHHHHHHhcccccceeeeeeeeEecCcc--hhhccCCCc-eEEecCccCCcHHHHHHHHh-Cch---hH------
Confidence 999999999988764 3456677899999998 699999987 999974 78888887777 311 11
Q ss_pred cCCCeeeeecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHH
Q 022694 212 LGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVER 266 (293)
Q Consensus 212 ~~~~p~~~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~p 266 (293)
++ .+++.|+. +-+++++|.+.-.+. -...-.-+.||+.|..++++
T Consensus 306 ------v~---k~LklfTfl~l~eI~~I~~~H~k~-P~~r~aQ~~LA~eVTr~VHG 351 (467)
T KOG2623|consen 306 ------VE---KFLKLFTFLPLEEIKQILEEHRKE-PSQRIAQKLLAAEVTRMVHG 351 (467)
T ss_pred ------HH---HHHHHHhcCCHHHHHHHHHHHhcC-hhhhhHHHHHHHHHHHHHcc
Confidence 11 34444432 456777766655532 34455677888888888865
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.85 E-value=1.5e-09 Score=97.62 Aligned_cols=149 Identities=11% Similarity=0.048 Sum_probs=106.8
Q ss_pred cCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCcee-------EeecccccchhhhhhHHhhhheeeec
Q 022694 11 FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------IFSDFDYVGGAFYKNMVKVAKCVTYN 83 (293)
Q Consensus 11 ~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~-------i~~qs~~~~~~~~~~~~~l~r~~t~~ 83 (293)
+|..+++-|.| |+ ......++...+.+++..+|+++++.. +|.||+-. ..|..-+-+|...
T Consensus 32 ~~G~~ilRieD----td---~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~QS~r~-~~y~~~~~~L~~~---- 99 (239)
T cd00808 32 HGGKFILRIED----TD---QERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQSERL-EIYRKYAEKLLEK---- 99 (239)
T ss_pred cCCeEEEEECc----CC---CCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEeeeCCH-HHHHHHHHHHHHc----
Confidence 57777777888 43 223344556666777778899999854 78898743 2333333333211
Q ss_pred ceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccc
Q 022694 84 KVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP 163 (293)
Q Consensus 84 ~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lp 163 (293)
| -|..+|++.+++| ....+. |+|+.|.|+..+...-+.+++.||.+.|...+.|+++
T Consensus 100 ------g------dg~ptY~~a~~vD--------D~~~~i---thViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~ 156 (239)
T cd00808 100 ------G------DGFPTYHLANVVD--------DHLMGI---THVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLIL 156 (239)
T ss_pred ------C------CCCcccccHHHHh--------HHhcCC---CEEEEChhhhhChHHHHHHHHHcCCCCCceEeecccc
Confidence 1 2788999999994 555666 5899999999999999999999999999888899999
Q ss_pred cccCCccccccCCCCceeeec----cChHHHHHHhhh
Q 022694 164 ALQGETGKMSASDPNSAIYVT----DSAKAIKNKINK 196 (293)
Q Consensus 164 gL~g~~~KMSkS~~~s~I~L~----D~~~~i~~KI~k 196 (293)
+.+| .||||+..+.+|.-. -+|+.|..-+..
T Consensus 157 ~~~g--~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 157 NPDG--KKLSKRKGDTSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred CCCC--CcccCCCCCccHHHHHHCCCCHHHHHHHHHH
Confidence 9998 699999876333222 256666665554
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.63 E-value=1.3e-09 Score=90.32 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=55.3
Q ss_pred cCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCC-CcccccccccccccCCccccccCC
Q 022694 102 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASD 176 (293)
Q Consensus 102 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~-~p~~l~~~~lpgL~g~~~KMSkS~ 176 (293)
||++|+| |++.+.....+++++|.||.+|++..++++++++.+ +|.+++.++|++.+| +|||||.
T Consensus 78 y~~~~~a--------~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g--~KmSks~ 143 (143)
T cd00802 78 YMFLQAA--------DFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADG--TKMSKSK 143 (143)
T ss_pred HHHHHHH--------HHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCC--CcCCCCC
Confidence 9999999 666666533457999999999999999999999764 688889999999886 6999984
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=97.91 E-value=1.2e-05 Score=72.09 Aligned_cols=149 Identities=12% Similarity=0.121 Sum_probs=98.7
Q ss_pred hhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheeeecceeee
Q 022694 9 DAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 88 (293)
Q Consensus 9 ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~~~~~~~ 88 (293)
..+|..+++-|=| |+ ......+....+..++..+|++.++- ++.||+-. ..|...+-+|...=
T Consensus 30 r~~~G~~iLRieD----tD---~~R~~~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~-~~y~~~~~~L~~~g-------- 92 (230)
T cd00418 30 RKYGGKFILRIED----TD---PERSRPEYVESILEDLKWLGLDWDEG-PYRQSDRF-DLYRAYAEELIKKG-------- 92 (230)
T ss_pred HHcCCeEEEEeCc----CC---CCCCChHHHHHHHHHHHHcCCCCCCC-eeehhcCH-HHHHHHHHHHHHcC--------
Confidence 4468888887777 32 12233455666777777889999864 56787754 23333333333110
Q ss_pred ccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccccccCC
Q 022694 89 FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGE 168 (293)
Q Consensus 89 ~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~ 168 (293)
| ||..+-|- .++|.+. +. |+|..|.|+..+-..-+.+++.||.++|...+.|+|.+.+|
T Consensus 93 ---------g---~p~Y~la~----vvDD~~~-gI---ThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g- 151 (230)
T cd00418 93 ---------G---YPLYNFVH----PVDDALM-GI---THVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDG- 151 (230)
T ss_pred ---------C---Cccccccc----ccccccc-CC---CEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCC-
Confidence 3 44444332 2237654 33 68999999999999999999999999999999999999887
Q ss_pred ccccccCCCCceeeec----cChHHHHHHhhh
Q 022694 169 TGKMSASDPNSAIYVT----DSAKAIKNKINK 196 (293)
Q Consensus 169 ~~KMSkS~~~s~I~L~----D~~~~i~~KI~k 196 (293)
+|||||..+.+|.-. -+|+.|..-+..
T Consensus 152 -~KLSKr~~~~~i~~~r~~G~~p~ai~~~l~~ 182 (230)
T cd00418 152 -TKLSKRKLNTTLRALRRRGYLPEALRNYLAL 182 (230)
T ss_pred -CCccCcCCCcCHHHHHHCCCcHHHHHHHHHH
Confidence 799999875333221 345556555544
No 30
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=97.55 E-value=3.6e-05 Score=76.68 Aligned_cols=55 Identities=24% Similarity=0.374 Sum_probs=47.6
Q ss_pred eccccccCCc-ccccccccCC-ccCCCCcccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDP-YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~-~~~laRdia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+.|.|.||.. +...++.+++ .||.+.|..+...++..-+| +|||||.+| .|.+.|
T Consensus 237 ~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G--~KMSKSkGN-~i~~~d 293 (510)
T PRK00750 237 FEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKG--EKISKSKGN-VITIED 293 (510)
T ss_pred EEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCC--CcccccCCC-ccCHHH
Confidence 6899999999 9999999999 99998898887787776555 799999986 787765
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=96.81 E-value=0.00024 Score=67.59 Aligned_cols=55 Identities=29% Similarity=0.461 Sum_probs=44.9
Q ss_pred eccccccCCcc---cccccccCC-ccCCCCcccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPY---FRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~---~~laRdia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
..|+|.||..+ +..++.+++ .||.+.|..+...++ .+.|. .|||||.+| .|.+.|
T Consensus 230 ~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V-~l~gg-~KMSKSkGn-vI~~~d 288 (353)
T cd00674 230 FEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFI-GLKGG-GKMSSSKGN-VITPSD 288 (353)
T ss_pred EEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeE-EeCCC-CccCCCCCC-cCCHHH
Confidence 57999999999 999999999 999988877666655 35552 599999986 777765
No 32
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=93.50 E-value=0.056 Score=53.61 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=52.5
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc------ChHHHHHHhhh
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 196 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~i~~KI~k 196 (293)
|+|..|.||..|.-.-..+.+.||.+.|...|.|++.+++| +||||.++ .+.+.+ .|+.+..-+.+
T Consensus 209 thvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g--~klSKR~g--~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 209 THVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDG--KKLSKRHG--ATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred CEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccCcCC--ccCHHHHHHCCCCHHHHHHHHHH
Confidence 57889999999998888899999998898888899989987 79999975 454433 55555555544
No 33
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=92.76 E-value=0.028 Score=60.06 Aligned_cols=56 Identities=25% Similarity=0.110 Sum_probs=37.4
Q ss_pred CCCCccceeccccccCC---cccccccccCCccCCCCc-ccccccccccccCCccccccCCCCceee
Q 022694 120 SGKDHLRCLIPCAIDQD---PYFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIY 182 (293)
Q Consensus 120 ~~~ad~~~~vpvG~DQ~---~~~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~ 182 (293)
.+.+| +...|.||. .|-.+-..++- +|.+++ .++.+.++...+| .|||||.+| .|.
T Consensus 543 ~~P~D---l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G--~KMSKSlGN-vId 602 (912)
T PRK05743 543 GYPAD---LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKG--RKMSKSLGN-VID 602 (912)
T ss_pred CCCce---EEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCC--CCCCCCCCC-cCC
Confidence 34565 568999997 33444444443 555545 3445788888887 799999987 554
No 34
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=92.58 E-value=0.18 Score=45.44 Aligned_cols=141 Identities=15% Similarity=0.132 Sum_probs=82.7
Q ss_pred HhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhh-eeeeccee
Q 022694 8 QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAK-CVTYNKVV 86 (293)
Q Consensus 8 Q~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r-~~t~~~~~ 86 (293)
...+|..+++=|=| |+ ......+....+..++..+|++++. ++.||+-.+ .|..-+-+|-. -..|...
T Consensus 29 Ar~~~G~~iLRieD----tD---~~R~~~~~~~~I~~dL~wlGl~wD~--~~~QS~r~~-~Y~~~~~~L~~~g~aY~~~- 97 (238)
T cd00807 29 AKKYGGRCNLRFDD----TN---PEKEEEEYVDSIKEDVKWLGIKPYK--VTYASDYFD-QLYEYAEQLIKKGKAYVHH- 97 (238)
T ss_pred HHHhCCEEEEEecC----CC---CcccchHHHHHHHHHHHHcCCCCCC--ceecccCHH-HHHHHHHHHHHcCCeecCC-
Confidence 34467777777666 32 2223445566777788889999984 677887542 23222222211 1111100
Q ss_pred eeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCccccccccccccc
Q 022694 87 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQ 166 (293)
Q Consensus 87 ~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~ 166 (293)
+ .. -...+||..+-|- -++|.+.. | |+|.-|.|....-..=.-+.+.||.+.|..+.-..+ +.+
T Consensus 98 -~---~~---~~~~i~ptY~lA~----vVDD~~~g---I-ThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hl-n~~ 161 (238)
T cd00807 98 -R---TG---DKWCIYPTYDFAH----PIVDSIEG---I-THSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRL-NLT 161 (238)
T ss_pred -C---CC---CCEEEEeccccce----EeeccccC---C-CeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEE-CCC
Confidence 0 00 1233467777652 23376543 3 689999998877666666778899988865432233 666
Q ss_pred CCccccccCCC
Q 022694 167 GETGKMSASDP 177 (293)
Q Consensus 167 g~~~KMSkS~~ 177 (293)
| .|+||+..
T Consensus 162 g--~kLSKR~~ 170 (238)
T cd00807 162 Y--TVMSKRKL 170 (238)
T ss_pred C--CCccCcCc
Confidence 6 79999974
No 35
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=92.30 E-value=0.026 Score=52.68 Aligned_cols=55 Identities=22% Similarity=0.106 Sum_probs=34.8
Q ss_pred eccccccCC-cccccccccCCccCCC-Cc-ccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQD-PYFRMTRDVAPRIGYH-KP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~-~~~~laRdia~r~n~~-~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+..+|.||. +|+..-.-....++.. .| .++.+.++---.| +|||||.+| .|.+.|
T Consensus 229 i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~KmSKS~gn-~v~~~d 286 (312)
T cd00668 229 WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGG--QKMSKSKGN-VIDPSD 286 (312)
T ss_pred EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCC--ccccccCCC-cCCHHH
Confidence 568999999 7766555444444433 33 3344566653333 799999987 777643
No 36
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=92.17 E-value=0.031 Score=55.78 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=42.1
Q ss_pred eccccccCCcccccccccCCccCCCCcc---ccc--ccccccccCCccccccCCCCceeeeccChHH
Q 022694 128 LIPCAIDQDPYFRMTRDVAPRIGYHKPA---LIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKA 189 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRdia~r~n~~~p~---~l~--~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~ 189 (293)
+-.+|.||..|+.-...+++.+|+.++. .+| ..++-+=+| +|||||.+| .|.+.|==++
T Consensus 276 i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g--~KMSkR~Gn-~i~l~dll~~ 339 (507)
T PRK01611 276 IYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEG--VKMSTRAGN-VVTLDDLLDE 339 (507)
T ss_pred EEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCC--CcccCCCCc-eeEHHHHHHH
Confidence 3479999999999999999999986442 233 234444344 799999987 8887653333
No 37
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=91.69 E-value=0.3 Score=44.08 Aligned_cols=143 Identities=14% Similarity=0.137 Sum_probs=87.2
Q ss_pred HhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhh-heeeeccee
Q 022694 8 QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVA-KCVTYNKVV 86 (293)
Q Consensus 8 Q~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~-r~~t~~~~~ 86 (293)
-..+|..+++=|-|. +.+. ..........+.+++..+|++++. ++.||+-.+ .|...+-+|- +-.-|. .
T Consensus 29 Ar~~~G~~ilRieDt----D~~r-~~~~~~~~~~i~~dL~wLGl~~d~--~~~qS~r~~-~y~~~~~~Li~~G~aY~--~ 98 (240)
T cd09287 29 AKMYGGKFILRFDDT----DPRT-KRPDPEAYDMIPEDLEWLGVKWDE--VVIASDRIE-LYYEYARKLIEMGGAYV--H 98 (240)
T ss_pred HHHcCCEEEEeeCcC----CCCc-ccchHHHHHHHHHHHHHcCCCCCC--ccchhccHH-HHHHHHHHHHHcCCccc--C
Confidence 344788888887883 3222 012333344577788889999984 678887642 2322222221 111111 0
Q ss_pred eeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCccccccccccccc
Q 022694 87 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQ 166 (293)
Q Consensus 87 ~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~ 166 (293)
... ++ ..++||..+-|- .++|.+.. . |+|.-|.|-..+-..=.-+.+.||.+.|...+.|+|.. .
T Consensus 99 ~~~---~~---~~~i~ptY~la~----vVDD~~~g-I---ThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~-~ 163 (240)
T cd09287 99 PRT---GS---KYRVWPTLNFAV----AVDDHLLG-V---THVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKI-E 163 (240)
T ss_pred ccc---CC---cEEEEEccccce----eeeccccC-C---CeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecC-C
Confidence 110 11 124567777663 23366543 3 68999999888877777788889999999889898863 4
Q ss_pred CCccccccCCC
Q 022694 167 GETGKMSASDP 177 (293)
Q Consensus 167 g~~~KMSkS~~ 177 (293)
| .||||.+.
T Consensus 164 ~--~kLSKR~~ 172 (240)
T cd09287 164 G--GKLSTSKI 172 (240)
T ss_pred C--Ceeccccc
Confidence 5 79999963
No 38
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=91.30 E-value=0.046 Score=52.62 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=33.3
Q ss_pred eccccccCCcccccccccCC--ccCCCCc--ccccccccccccCCccccccCCCCceeeec
Q 022694 128 LIPCAIDQDPYFRMTRDVAP--RIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 184 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRdia~--r~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 184 (293)
+..+|.||...+-.. .++. .+....| .++.+.++.+++| +|||||.+| .|.+.
T Consensus 299 ~~~~G~D~~~~h~~~-~l~~~~~~~g~~p~~~v~~hg~v~~~~g--~KMSKS~Gn-~v~~~ 355 (382)
T cd00817 299 LLVTGHDIIFFWVAR-MIMRGLKLTGKLPFKEVYLHGLVRDEDG--RKMSKSLGN-VIDPL 355 (382)
T ss_pred eeeeecCcCchHHHH-HHHHHHHhhCCCchHHeEeeeeEECCCC--CCccccCCC-CCCHH
Confidence 468999997654332 2221 1212234 4445778877777 799999987 77664
No 39
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=90.70 E-value=0.066 Score=53.58 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=34.7
Q ss_pred eccccccCCccc---ccccccCC-ccCCCCcccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYF---RMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~---~laRdia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
..|.|.|+...- ....++|+ -||...|..+.--+ ..|+|.+.|||||.+| .|.+.|
T Consensus 228 ~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~-v~L~~~g~KMSKS~Gn-~itl~d 287 (515)
T TIGR00467 228 FEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEW-ISLKGKGGKMSSSKGD-VISVKD 287 (515)
T ss_pred cccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEE-EEEcCCCccccCCCCC-CccHHH
Confidence 579999987633 44555554 56665665433222 2255655799999986 666544
No 40
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=90.12 E-value=0.064 Score=53.47 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=55.4
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceee-ec---cChHHHHHHhhhcccC
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VT---DSAKAIKNKINKYAFS 200 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~---D~~~~i~~KI~k~A~t 200 (293)
++|..|.||..|.---..+.+.||...|...|.|+|.+++| +||||..+...|. +. =.|+.|..-+.....+
T Consensus 198 thVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g--~KLSKR~g~~~i~~~r~~G~~Peai~n~la~LG~s 273 (513)
T PRK14895 198 THIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG--AKLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWS 273 (513)
T ss_pred CEEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCC--CccccccCchhHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 57889999999988888888999998899999999999998 7999997643221 11 1677777777653333
No 41
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=89.68 E-value=0.094 Score=51.82 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=34.8
Q ss_pred cccCCCCccceeccccccCC-cccccccccCC---ccCCCCccc-ccccccccccCCccccccCCCCceeeecc
Q 022694 117 HLFSGKDHLRCLIPCAIDQD-PYFRMTRDVAP---RIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 117 Dil~~~ad~~~~vpvG~DQ~-~~~~laRdia~---r~n~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
.+|...-| +-++|.|.. +|+ .+++|. -+|.|-+-. +|+.+| .++| +|||||.+| .|.+.|
T Consensus 215 ~~lg~~~D---ih~gG~DlifpHh--~neiaqs~a~~g~p~~~~w~H~g~v-~~~G--~KMSKS~GN-~i~~~d 279 (463)
T PRK00260 215 KYLGETFD---IHGGGADLIFPHH--ENEIAQSEAATGKPFANYWMHNGFV-TVNG--EKMSKSLGN-FFTIRD 279 (463)
T ss_pred HhcCCCcc---eecCccccCCCch--HhHHHHHHHhcCCCcceEEEEccEE-ccCC--CcccCcCCC-CCCHHH
Confidence 34444344 358999954 454 445555 245222223 344444 4777 799999987 666644
No 42
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=89.61 E-value=0.068 Score=50.02 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=32.6
Q ss_pred eccccccCCccc----ccccccCCccCC---CCccc-ccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYF----RMTRDVAPRIGY---HKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~----~laRdia~r~n~---~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+-.+|.||.+++ .+-..++...|+ +.|.. +.+.+|- ++| +|||||.+| .|.+.|
T Consensus 227 i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g--~KmSkS~Gn-~v~~~d 288 (314)
T cd00812 227 IYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEG--EKMSKSKGN-VVTPDE 288 (314)
T ss_pred eeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCc--cccCCcCCC-CCCHHH
Confidence 457899996633 233344444443 34433 3455554 566 799999987 777743
No 43
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=89.36 E-value=0.15 Score=46.87 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=57.2
Q ss_pred cCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCcee
Q 022694 102 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181 (293)
Q Consensus 102 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I 181 (293)
||..+-|. .++|.+.. . |+|.-|.|....--.=.-+.+.||.++|...|.|+|.+.+| .|+||++....|
T Consensus 170 ~ptY~fA~----vVDD~~~g-I---ThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKR~~~~~i 239 (272)
T TIGR03838 170 LFAYQLAV----VVDDAAQG-I---THVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADG--EKLSKQNGAPAL 239 (272)
T ss_pred CccccChh----hhhcccCC-C---CEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhCCCC--CeeeccCCccch
Confidence 45555442 23365542 2 68889999877666666677888999999899999999998 799999864444
Q ss_pred eeccChHHHHHHhhh
Q 022694 182 YVTDSAKAIKNKINK 196 (293)
Q Consensus 182 ~L~D~~~~i~~KI~k 196 (293)
.=.+.++.+..-+.+
T Consensus 240 ~~~~~~~~~~~~l~~ 254 (272)
T TIGR03838 240 DLSHPLPALLAALRF 254 (272)
T ss_pred hcCCcHHHHHHHHHH
Confidence 333444444444433
No 44
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=89.29 E-value=0.09 Score=55.89 Aligned_cols=54 Identities=26% Similarity=0.205 Sum_probs=33.3
Q ss_pred eccccccCCc---ccccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~---~~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+...|.||.. |..+-..++- ++.++| .++.+.++...+| +|||||.+| .|...|
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~-~~~~P~k~v~~hG~vl~~~G--~KMSKSkGN-vI~p~d 624 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTAL-FGQAPYKNVITHGFTLDEKG--RKMSKSLGN-VVDPLK 624 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHH-cCCCChHhhEecceEECCCC--CCcCCCCCC-CCCHHH
Confidence 5789999966 2222222221 354444 3445777776676 799999987 676543
No 45
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=89.18 E-value=0.077 Score=50.23 Aligned_cols=53 Identities=26% Similarity=0.176 Sum_probs=32.6
Q ss_pred eccccccCCc---ccccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeeec
Q 022694 128 LIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 184 (293)
Q Consensus 128 ~vpvG~DQ~~---~~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 184 (293)
+.+.|.||.. |..+-.-++ -.+...| .++.+.++...+| +|||||.+| .|.+.
T Consensus 255 ~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g--~KmSKS~gn-~i~~~ 311 (338)
T cd00818 255 FILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDG--RKMSKSLGN-YVDPQ 311 (338)
T ss_pred EEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCC--CCCCCCCCC-cCCHH
Confidence 4577999974 333333332 2333333 3445777766677 799999987 77764
No 46
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=88.70 E-value=0.13 Score=51.09 Aligned_cols=52 Identities=27% Similarity=0.265 Sum_probs=33.7
Q ss_pred eccccccCCccccc---ccccCCccCCCCc-ccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYFRM---TRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~~l---aRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+...|.||..++-. +.-.+- +.+.| .++++.++- ++| +|||||.+| .|.+.|
T Consensus 257 ~~~~G~D~~~~h~~~~~a~~~a~--~~~~p~~~~~~g~v~-~~G--~KMSKS~GN-~i~~~d 312 (511)
T PRK11893 257 VHLIGKDILRFHAVYWPAFLMAA--GLPLPKRVFAHGFLT-LDG--EKMSKSLGN-VIDPFD 312 (511)
T ss_pred ceEecccccccchhHHHHHHHhC--CCCCCCEEEeeccEE-ECC--eeecccCCc-EEcHHH
Confidence 36789999885322 332322 44556 444567765 576 799999987 887754
No 47
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=88.46 E-value=0.13 Score=55.44 Aligned_cols=57 Identities=21% Similarity=0.113 Sum_probs=34.4
Q ss_pred CCCCccceeccccccCCc---ccccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeee
Q 022694 120 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 183 (293)
Q Consensus 120 ~~~ad~~~~vpvG~DQ~~---~~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 183 (293)
.+.+| +...|.||.. |-.+..-++ -.|.+++ .++.|.++...+| +|||||.+| .|..
T Consensus 581 ~~PaD---~~~eG~Di~rgWF~s~ll~s~~-~~~~~P~k~V~~HG~vld~~G--~KMSKSlGN-vIdP 641 (961)
T PRK13804 581 KWPAD---LYLEGSDQHRGWFNSSLLESCG-TRGRAPYKAVLTHGFTLDEKG--EKMSKSLGN-TVSP 641 (961)
T ss_pred CCCce---EEEEEcccccHHHHHHHHHHHH-hcCCCChhhEEEeccEECCCC--CCccCCCCC-cCCH
Confidence 45665 5689999975 111111111 0122233 4556888888787 799999987 6644
No 48
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=87.98 E-value=0.15 Score=50.48 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=53.1
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc------ChHHHHHHhhh
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 196 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~i~~KI~k 196 (293)
++|..|.||..|...-..+.+.+|.+.|...|.|++.+++| +||||..+ .+.|.+ .|+.+..-+.+
T Consensus 199 thvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g--~kLSKR~g--~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 199 THVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG--KKLSKRDG--ATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred CEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC--ccccccCC--CccHHHHHHCCCCHHHHHHHHHH
Confidence 57889999999998888999999998898888899889888 79999975 444433 56666665554
No 49
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.61 E-value=0.3 Score=51.15 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=20.7
Q ss_pred ccccccccccccCCccccccCCCCceee
Q 022694 155 ALIESSFFPALQGETGKMSASDPNSAIY 182 (293)
Q Consensus 155 ~~l~~~~lpgL~g~~~KMSkS~~~s~I~ 182 (293)
.++.+++|..-+| .|||||.+| .|.
T Consensus 579 ~V~LH~mVRDa~G--RKMSKSLGN-VID 603 (995)
T KOG0432|consen 579 EVLLHGLVRDAHG--RKMSKSLGN-VID 603 (995)
T ss_pred heeechhhccccc--cccchhhcc-ccC
Confidence 4567999999998 699999997 553
No 50
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=87.46 E-value=0.054 Score=51.63 Aligned_cols=66 Identities=23% Similarity=0.412 Sum_probs=31.1
Q ss_pred eccccccCCc---ccccccccC-CccCCCCcccccccccccccCCccccccCCCCceeeecc-----ChHHHHHHhhh
Q 022694 128 LIPCAIDQDP---YFRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 196 (293)
Q Consensus 128 ~vpvG~DQ~~---~~~laRdia-~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~i~~KI~k 196 (293)
..|.|.|+.. -...+.+|| +=||.++|..+.--+ -++.|. +|||||.+| .|.+.| +||.++=-+-+
T Consensus 237 fEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~-~~~~g~-~kmSsSkG~-~~t~~e~L~~~~PE~lr~l~~~ 311 (360)
T PF01921_consen 237 FEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEF-FLDKGG-GKMSSSKGN-GITPEEWLEYAPPESLRYLMAR 311 (360)
T ss_dssp EEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE---EEES----------------HHHHHTTS-HHHHHHHHHC
T ss_pred eccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeE-EEeCCC-cccccCCCC-ccCHHHHHHhcCHHHHHHHHcc
Confidence 5799999888 888999999 778988887754322 345563 599999987 777665 66666544433
No 51
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=87.43 E-value=0.13 Score=52.16 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=46.7
Q ss_pred eccccccCCcccccccccCCccCCCCcc-cccc--cccccccCCccccccCCCCceeeeccChHHHHHHhhh
Q 022694 128 LIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 196 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRdia~r~n~~~p~-~l~~--~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k 196 (293)
+-.+|.||..|+.-...++..+|++.|. +.+. .++. | .|||||.+| .|.+.|=.+++.++...
T Consensus 331 I~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~---~--~kmSkr~Gn-~V~~~dll~~~~~ra~~ 396 (566)
T TIGR00456 331 IYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVP---L--GSMKTRRGN-VISLDNLLDEASKRAGN 396 (566)
T ss_pred EEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEE---C--CCCCccCCc-eeeHHHHHHHHHHHHHH
Confidence 3479999999999999999999987664 3333 3332 2 499999986 99998766665554444
No 52
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=87.38 E-value=0.11 Score=51.33 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=35.9
Q ss_pred cccCCCCccceeccccccCC-cccccccccCCc-cCCCCccc-ccccccccccCCccccccCCCCceeeecc
Q 022694 117 HLFSGKDHLRCLIPCAIDQD-PYFRMTRDVAPR-IGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 117 Dil~~~ad~~~~vpvG~DQ~-~~~~laRdia~r-~n~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
.+|+..-| +-.+|.|.. +|++--+-...- +|.+.+.. +++.+| .++| +|||||.+| .|.+.|
T Consensus 214 ~~lg~~~D---ih~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v-~~~g--~KMSKS~GN-~i~~~d 278 (465)
T TIGR00435 214 KYLGDQID---IHGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFL-MIDN--EKMSKSLGN-FFTVRD 278 (465)
T ss_pred HhcCCCce---eeccccccccchHHHHHHHHHHhcCCCCCcEEEEeeEE-EecC--ccccccCCC-cCCHHH
Confidence 35554444 458999984 565544433322 34333333 344443 4777 699999987 666644
No 53
>PLN02381 valyl-tRNA synthetase
Probab=86.92 E-value=0.13 Score=55.77 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCCccceeccccccCCcccccccccCCcc--CCCCc--ccccccccccccCCccccccCCCCceeee
Q 022694 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRI--GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV 183 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ~~~~~laRdia~r~--n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 183 (293)
|.+| +..-|.||. ++=++|-++..+ ....| .++.+++|.+-+| .|||||.+| .|..
T Consensus 607 ~P~d---~~~~G~Dii-~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G--~KMSKS~GN-vIdP 666 (1066)
T PLN02381 607 YPTS---VLETGHDIL-FFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG--RKMSKSLGN-VIDP 666 (1066)
T ss_pred CCCe---eeeecchhh-hhHHHHHHHHHHHhCCCCchHHheecceEECCCC--CCCCCCCCC-CCCH
Confidence 4565 456899998 444555554332 22456 3456889988888 799999987 6644
No 54
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=86.74 E-value=0.21 Score=50.52 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=51.4
Q ss_pred cccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCC
Q 022694 100 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 177 (293)
Q Consensus 100 ~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~ 177 (293)
..||.++-|.. ++|.+. +. |+|..|.|...+-..=.-+.+.||.+.|...|.++|. ++| .|||||..
T Consensus 278 ~i~PtY~fA~~----VDD~l~-GI---THViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~-~~g--~kLSKR~~ 344 (567)
T PRK04156 278 RVWPTYNFAVA----VDDHLL-GV---THVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLK-IEG--FVLSTSKI 344 (567)
T ss_pred EEEEEeccCce----eeecCC-CC---CeEEcccccccChHHHHHHHHHcCCCCceEEEcceec-CCC--ceeecccc
Confidence 35788776643 335543 33 6899999998887777788888999899999999886 566 69999973
No 55
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=86.56 E-value=0.23 Score=46.34 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=42.0
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCC
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 177 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~ 177 (293)
|+|.=|.|....-..=.-+.+.||.+.|...|.|+|.+.+| .||||++.
T Consensus 194 ThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~H~pll~~~~g--~kLSKr~~ 242 (299)
T PRK05710 194 THVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNADG--QKLSKQNG 242 (299)
T ss_pred CEEEeChhhhhcCHHHHHHHHHcCCCCCeEEEeecccCCCC--CcccccCC
Confidence 57889999877766666777889999999999999999998 79999965
No 56
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=86.36 E-value=0.2 Score=51.20 Aligned_cols=56 Identities=23% Similarity=0.097 Sum_probs=30.5
Q ss_pred CCCccceeccccccCCcccccccccC--CccCCCCc--ccccccccccccCCccccccCCCCceeee
Q 022694 121 GKDHLRCLIPCAIDQDPYFRMTRDVA--PRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYV 183 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ~~~~~laRdia--~r~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 183 (293)
+.+| +...|.||....- .+-+. ..+....| .++.+.++...+| +|||||.+| .|..
T Consensus 513 ~P~D---~~~~G~D~~~~W~-~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p 572 (601)
T PF00133_consen 513 YPVD---LYIEGKDQIRGWF-QSSLFLSVALFGKEPFKKVITHGFVLDEDG--RKMSKSKGN-VIDP 572 (601)
T ss_dssp SSBS---EEEEEGGGTTTHH-HHHHHHHHHHSSSTSBSEEEEE--EEETTS--SB-BTTTTB---BH
T ss_pred CCcc---cccCCccchhhHH-HHhHhhccccccCCchheeeecccccccce--eecccCCCc-ccCH
Confidence 4455 5679999976532 11111 11111233 5566888888888 799999987 6654
No 57
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=86.30 E-value=0.27 Score=48.74 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=45.1
Q ss_pred cccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCC
Q 022694 117 HLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 177 (293)
Q Consensus 117 Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~ 177 (293)
|.+.. | |+|.-|.|+..+=..=+-+.+.||.+.|...|.|+|.+=+| +||||++.
T Consensus 202 D~~mg---I-THviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~~g--~kLSKr~~ 256 (472)
T COG0008 202 DHLMG---I-THVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDG--KKLSKRKG 256 (472)
T ss_pred hhhcC---C-ceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecCCC--CeecCccC
Confidence 65543 3 68999999988877777788889999999999999999443 79999986
No 58
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=86.25 E-value=0.15 Score=54.29 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=35.5
Q ss_pred eccccccCCcccccccccCCccC--CCCc--ccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRdia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+...|.||..+ =++|-++.... ...| .++.+.+|...+| +|||||.+| .|...|
T Consensus 476 ~~~~G~Dii~~-W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKSlGN-vIdP~d 533 (874)
T PRK05729 476 VLVTGFDIIFF-WVARMIMMGLHFTGQVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDPLD 533 (874)
T ss_pred cccccccccch-HHHHHHHHHHHhcCCCchhheEEeeeEECCCC--CCcccCCCC-CCCHHH
Confidence 45789998875 34444433221 1345 4556888888888 799999987 666544
No 59
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=86.25 E-value=0.2 Score=52.87 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=31.6
Q ss_pred eccccccCCcccccccccCCc---cCCCCc--ccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYFRMTRDVAPR---IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRdia~r---~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+...|.||.... +.+-++.. ++. .| .++.+.++...+| +|||||.+| .|...|
T Consensus 489 ~~~~G~Di~~~w-~~~~l~~~~~~~~~-~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~ 546 (800)
T PRK13208 489 LRPQGHDIIRTW-LFYTILRAYLLTGK-LPWKNIMISGMVLDPDG--KKMSKSKGN-VVTPEE 546 (800)
T ss_pred EEEeecchhhhH-HHHHHHHHHHhcCC-CCcceEEEeeEEECCCC--CCCCCCCCC-CCCHHH
Confidence 456899997621 11222111 232 34 3445778877777 799999987 666533
No 60
>PLN02286 arginine-tRNA ligase
Probab=86.07 E-value=0.42 Score=48.57 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=46.3
Q ss_pred eeccccccCCcccccccccCCccCCCCc------ccccccccccccCCccccccCCCCceeeeccChHHHHH
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKP------ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 192 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p------~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~ 192 (293)
++-.+|.||..|+.-...+++.+|+.++ .++.-.+|-+++| +||||-.++ .|.|.|=-+++.+
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g--~kmStR~G~-~v~L~dlldea~~ 398 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG--KRFRTRSGE-VVRLVDLLDEAKS 398 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC--CcccCCCCC-eeEHHHHHHHHHH
Confidence 3447899999999999999999997422 2334567866776 699988775 8998774444433
No 61
>PLN02843 isoleucyl-tRNA synthetase
Probab=85.98 E-value=0.24 Score=53.46 Aligned_cols=57 Identities=25% Similarity=0.123 Sum_probs=34.3
Q ss_pred CCCCccceeccccccCCc---ccccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeee
Q 022694 120 SGKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 183 (293)
Q Consensus 120 ~~~ad~~~~vpvG~DQ~~---~~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 183 (293)
.+.+| +...|.||.. |-++..-++ -.|.+++ .++.|.++..-+| +|||||.+| .|..
T Consensus 562 ~~PaD---l~~eG~Di~rgWf~s~l~~~~~-~~g~~Pfk~v~~HG~vld~~G--~KMSKSlGN-vI~p 622 (974)
T PLN02843 562 SYPAD---LYLEGSDQHRGWFQSSLLTSVA-TKGKAPYKSVLTHGFVLDEKG--FKMSKSLGN-VVDP 622 (974)
T ss_pred CCCce---eeeeeccccchHHHHHHHHHHH-hcCCCccceEEEeccEECCCC--CCcCCCCCC-cCCH
Confidence 35565 4688999987 222222221 1343332 4455788877777 799999987 5543
No 62
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=85.23 E-value=0.15 Score=55.29 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=36.0
Q ss_pred eccccccCCcccccccccCCccC--CCCc--ccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRdia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+...|.||.. +=++|-++..+. ...| .++.+.+|..-+| +|||||.+| .|...|
T Consensus 494 ~~~~G~Dii~-~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G--~KMSKSkGN-vIdP~d 551 (1052)
T PRK14900 494 VMETGHDIIF-FWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKG--QKMSKTKGN-VIDPLV 551 (1052)
T ss_pred hhcccccHHh-HHHHHHHHHHHHhcCCCccceeEecccEECCCC--CCccCCCCC-CCCHHH
Confidence 4578999974 455565553332 1345 3556888877777 799999987 776654
No 63
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=84.87 E-value=0.29 Score=52.56 Aligned_cols=64 Identities=20% Similarity=0.218 Sum_probs=36.0
Q ss_pred eccccccCCc-ccccc--cccCCccC-CCCc-ccccccccccccCCccccccCCCCceeeecc-----ChHHHHHHhhh
Q 022694 128 LIPCAIDQDP-YFRMT--RDVAPRIG-YHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 196 (293)
Q Consensus 128 ~vpvG~DQ~~-~~~la--Rdia~r~n-~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~i~~KI~k 196 (293)
+...|.||.+ |+.+. ...| -|+ .+-| .++++.+|.. +| +|||||.+| .|.+.| +++.++=-+..
T Consensus 576 ~~~~GkDii~~H~~~~i~~~~a-~~~~~~~Pk~i~~~G~vl~-~G--~KMSKSlGN-vI~p~d~i~~yGaDalRl~Ll~ 649 (938)
T TIGR00395 576 WRISGKDLIPNHLTFYIFHHVA-IFPEKFWPRGIVVNGYVML-EG--KKMSKSKGN-VLTLEQAVEKFGADVARLYIAD 649 (938)
T ss_pred EEEEeeccccchHHHHHHHHHH-cCCccccCcEEEEeceEEe-CC--ccccCcCCC-CCCHHHHHHHcChHHHHHHHHh
Confidence 4679999976 43322 1111 011 1123 4445666654 66 799999987 776654 44555544444
No 64
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=84.47 E-value=0.19 Score=54.32 Aligned_cols=55 Identities=25% Similarity=0.193 Sum_probs=35.2
Q ss_pred CCCccceeccccccCCcccccccccCCccC--CCCc--ccccccccccccCCccccccCCCCceee
Q 022694 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIY 182 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ~~~~~laRdia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~ 182 (293)
|.+| +...|.||.. +=++|-++.... .+.| .++.|.+|.+-+| .|||||.+| .|.
T Consensus 537 ~P~d---~~~~G~Dii~-~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G--~KMSKSlGN-vId 595 (995)
T PTZ00419 537 FPTS---LLETGSDILF-FWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQG--EKMSKSKGN-VID 595 (995)
T ss_pred CCCc---EEEechhHHh-HHHHHHHHHHHHhcCCCChHHHhccceEECCCC--CCcccCCCC-cCC
Confidence 4455 4678899865 233443333221 1466 3556888888887 799999987 553
No 65
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.25 E-value=0.46 Score=46.73 Aligned_cols=58 Identities=24% Similarity=0.228 Sum_probs=35.7
Q ss_pred ccccc-CCcccccccccCCccCCCCccc---ccccccccccCCccccccCCCCceeeecc-----ChHHHH
Q 022694 130 PCAID-QDPYFRMTRDVAPRIGYHKPAL---IESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK 191 (293)
Q Consensus 130 pvG~D-Q~~~~~laRdia~r~n~~~p~~---l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~i~ 191 (293)
-||.| +-||+|--+--++-..-.+|.+ +|+.+| ..+| .|||||.+| .|.+.| +|+.++
T Consensus 226 gGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l-~i~g--eKMSKSLGN-fiti~d~l~~~~p~~lR 292 (464)
T COG0215 226 GGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFL-NIDG--EKMSKSLGN-FITVRDLLKKYDPEVLR 292 (464)
T ss_pred cCcccccCCCcccHHHHHHhhhCCCcceeEeEEccee-eecC--cCcccccCC-eeEHHHHHhhcCHHHHH
Confidence 46666 5688875444444333335533 455554 3466 799999987 777765 566665
No 66
>PLN02943 aminoacyl-tRNA ligase
Probab=84.19 E-value=0.29 Score=52.66 Aligned_cols=69 Identities=22% Similarity=0.139 Sum_probs=43.1
Q ss_pred CCCccceeccccccCCcccccccccCCccC--CCCc--ccccccccccccCCccccccCCCCceeeecc-----ChHHHH
Q 022694 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIK 191 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ~~~~~laRdia~r~n--~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~i~ 191 (293)
+.+| +...|.||.. +=++|-++.-.. ...| .++.+.++...+| +|||||.+| .|...| .++.++
T Consensus 535 yP~d---l~~~G~Dii~-fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~~i~~ygaDalR 607 (958)
T PLN02943 535 YPTT---VLETGHDILF-FWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQG--RKMSKTLGN-VIDPLDTIKEFGTDALR 607 (958)
T ss_pred CCCe---EEEEeehHHH-HHHHHHHHhhhhhcCCCChheEEEeccEECCCC--CcccCcCCC-CCCHHHHHHhcCChHHH
Confidence 4555 4578999984 456664443222 2345 3456788888887 799999987 776654 455555
Q ss_pred HHhhh
Q 022694 192 NKINK 196 (293)
Q Consensus 192 ~KI~k 196 (293)
=-+..
T Consensus 608 ~~l~~ 612 (958)
T PLN02943 608 FTLAL 612 (958)
T ss_pred HHHHh
Confidence 44443
No 67
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=83.50 E-value=0.41 Score=51.19 Aligned_cols=53 Identities=21% Similarity=0.152 Sum_probs=29.9
Q ss_pred eccccccCCcc-cccccccC-CccCC-CCc-ccccccccccccCCccccccCCCCceeeec
Q 022694 128 LIPCAIDQDPY-FRMTRDVA-PRIGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 184 (293)
Q Consensus 128 ~vpvG~DQ~~~-~~laRdia-~r~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 184 (293)
+...|.||... +-+.+-.. --|+. +-| .++.+.++.. +| +|||||.+| .|...
T Consensus 533 ~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G--~KMSKS~GN-vVdp~ 589 (897)
T PRK12300 533 WRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EG--KKMSKSKGN-VIPLR 589 (897)
T ss_pred EEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CC--ccccCcCCC-CCCHH
Confidence 45789999763 22221110 00111 334 4445677665 66 799999987 66553
No 68
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=82.63 E-value=0.28 Score=43.21 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=35.0
Q ss_pred cccccCCcccccccccCCccCCC-Cc--ccccccccccccCCccccccCC
Q 022694 130 PCAIDQDPYFRMTRDVAPRIGYH-KP--ALIESSFFPALQGETGKMSASD 176 (293)
Q Consensus 130 pvG~DQ~~~~~laRdia~r~n~~-~p--~~l~~~~lpgL~g~~~KMSkS~ 176 (293)
.+|.||..|+.--+.+++.+|.+ +| .++..++|.+-+| +||||..
T Consensus 164 v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~--~kmS~R~ 211 (212)
T cd00671 164 VVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKE--GKMSTRA 211 (212)
T ss_pred EECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCC--CCCCCCC
Confidence 89999999999999999999975 33 3333467765445 7999975
No 69
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=82.59 E-value=0.29 Score=52.06 Aligned_cols=54 Identities=24% Similarity=0.213 Sum_probs=34.9
Q ss_pred eccccccCCcccccccccCCc--cCCCCc--ccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRdia~r--~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+...|.||...+ ++|-++.. +..+.| .++.+.++...+| +|||||.+| .|...|
T Consensus 481 ~~~~G~Dii~fw-~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKS~GN-~i~p~~ 538 (861)
T TIGR00422 481 LLVTGYDIIFFW-VARMIFRSLALTGQVPFKEVYIHGLVRDEQG--RKMSKSLGN-VIDPLD 538 (861)
T ss_pred eeecchhhhhHH-HHHHHHHHHHhcCCCchheEEEeeEEECCCC--CCCCcCCCC-CCCHHH
Confidence 568899997753 23333322 111345 4556888888887 799999987 676544
No 70
>PLN02959 aminoacyl-tRNA ligase
Probab=82.52 E-value=0.25 Score=53.82 Aligned_cols=53 Identities=21% Similarity=0.098 Sum_probs=29.6
Q ss_pred eccccccCCcccccccccCCc---cCC-CCcc-cccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYFRMTRDVAPR---IGY-HKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRdia~r---~n~-~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+...|.||...+- +.-+... ++. |-|. ++.+.+|. ++| +|||||.+| .|.+.|
T Consensus 674 l~~sG~Dii~~wl-~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G--~KMSKSkGN-vI~p~d 731 (1084)
T PLN02959 674 LRVSGKDLIQNHL-TFAIYNHTAIWAEEHWPRGFRCNGHLM-LNS--EKMSKSTGN-FLTLRQ 731 (1084)
T ss_pred EEEecccHHHHHH-HHHHHHHHHhcCCCCCCceEEEccEEe-cCC--cCccccCCC-cCCHHH
Confidence 4567888866542 2222211 121 2232 33456555 676 799999987 666544
No 71
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=82.24 E-value=0.32 Score=52.47 Aligned_cols=57 Identities=19% Similarity=0.014 Sum_probs=32.9
Q ss_pred CCCccceeccccccCCcc---cccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeeec
Q 022694 121 GKDHLRCLIPCAIDQDPY---FRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 184 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ~~~---~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 184 (293)
+.+| +...|.||... ..+..-.+ -+|.+++ .++.+.++...+| +|||||.+| .|...
T Consensus 544 ~Pad---~~~~G~Di~r~Wf~~l~~~~~~-~~~~~pfk~v~~hG~Vld~~G--~KMSKSlGN-vIdP~ 604 (975)
T PRK06039 544 FPAD---FIVEGIDQTRGWFYTLLALSTA-LFDRPPYKNVLVHGHVLDEDG--QKMSKSLGN-YVDPF 604 (975)
T ss_pred CCce---EEEechhhHhhHHHHHHHHHHH-hcCCCcccEEEEeeeEECCCC--CCcCCCCCC-cCCHH
Confidence 4454 56789999752 11111111 1333322 3445777776677 799999987 66543
No 72
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=82.09 E-value=0.32 Score=45.58 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=30.7
Q ss_pred eccccccCCcccc---cccccCCccCCCCcccc-cccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYFR---MTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~~---laRdia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+..+|.|+..++. .|--. -.+.+.|..+ .+.++ .++| +|||||.+| .|.+.|
T Consensus 238 v~~~G~D~~~fh~~~~pa~l~--~~~~~~~~~~~~~~~~-~~~g--~kmSkS~gn-~i~~~~ 293 (319)
T cd00814 238 VHFIGKDIIRFHAIYWPAMLL--GAGLPLPTRIVAHGYL-TVEG--KKMSKSRGN-VVDPDD 293 (319)
T ss_pred EEEEeechhhhhHHHHHHHHH--hCCCCCCcEeeeeeeE-EECC--eeecccCCc-ccCHHH
Confidence 4589999988641 12111 1244545433 34444 3456 799999987 777643
No 73
>PLN02563 aminoacyl-tRNA ligase
Probab=81.69 E-value=0.41 Score=51.53 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=23.8
Q ss_pred CCCccceeccccccC-CcccccccccCCc------cCCCCcc--ccccccccc
Q 022694 121 GKDHLRCLIPCAIDQ-DPYFRMTRDVAPR------IGYHKPA--LIESSFFPA 164 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ-~~~~~laRdia~r------~n~~~p~--~l~~~~lpg 164 (293)
+.+| +..+|.|| .-|+-.+|-.... ....+|. ++.+.+|-+
T Consensus 615 ~PvD---~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~ 664 (963)
T PLN02563 615 MPVD---LYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILG 664 (963)
T ss_pred CCCc---EeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeec
Confidence 4566 57899999 4555555554322 1225673 344677765
No 74
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=81.61 E-value=0.52 Score=47.49 Aligned_cols=54 Identities=24% Similarity=0.387 Sum_probs=31.1
Q ss_pred eccccccCCccccc-cccc--CCccCCCCc-ccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYFRM-TRDV--APRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~~l-aRdi--a~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+...|.|+.+++.+ --.+ +.....+.| .++.+.++. ++| +|||||.+| .|...|
T Consensus 290 ~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~G--~KMSKS~GN-~I~p~d 347 (556)
T PRK12268 290 YYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LEG--GKFSKSRGW-GIWVDD 347 (556)
T ss_pred EEEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-ECC--eeeccCCCc-ccCHHH
Confidence 45779999775432 1111 121113445 444466664 566 799999987 666544
No 75
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=81.07 E-value=0.48 Score=46.97 Aligned_cols=55 Identities=29% Similarity=0.471 Sum_probs=36.2
Q ss_pred eccccccCCc---ccccccccCC-ccCCCCcccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDP---YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~---~~~laRdia~-r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
..|.|.|+.- -..-+++|++ -||+++|..+.-- .-+|+| ++|||||.+| .|.+.|
T Consensus 232 ~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE-~i~lkg-~~~mSsSkG~-~i~~~d 290 (521)
T COG1384 232 FEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYE-WILLKG-GGKMSSSKGN-VISLSD 290 (521)
T ss_pred cccCCcccccccCchHHHHHHHHHhcCCCCCCCCceE-EEEecC-CcccccCCCc-EEcHHH
Confidence 5799999754 2334455555 4677777765422 234566 4899999986 787776
No 76
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=80.52 E-value=0.39 Score=51.00 Aligned_cols=59 Identities=20% Similarity=0.109 Sum_probs=35.4
Q ss_pred CCCccceeccccccC-CcccccccccC---Cc---cCCCCcc--ccccccccc----ccCCcc-----------------
Q 022694 121 GKDHLRCLIPCAIDQ-DPYFRMTRDVA---PR---IGYHKPA--LIESSFFPA----LQGETG----------------- 170 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ-~~~~~laRdia---~r---~n~~~p~--~l~~~~lpg----L~g~~~----------------- 170 (293)
+.+| +..+|.|| .-|+-.+|-.. .. +...+|. ++.+.+|-+ -+| +
T Consensus 519 ~PvD---~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G--~~~~~~~~~~~~~~~~~~ 593 (842)
T TIGR00396 519 LPVD---LYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNG--KSPPDELTERDEKAKDKS 593 (842)
T ss_pred CCCc---EeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCC--CccChhhhcccccccccc
Confidence 4565 57899999 44444444321 11 1224663 455777776 455 4
Q ss_pred ----------ccccCCCCceeeecc
Q 022694 171 ----------KMSASDPNSAIYVTD 185 (293)
Q Consensus 171 ----------KMSkS~~~s~I~L~D 185 (293)
|||||.+| .|.+.|
T Consensus 594 ~~~~~~~~~~KMSKS~GN-~v~p~~ 617 (842)
T TIGR00396 594 GGELVVVGYEKMSKSKGN-GIDPQE 617 (842)
T ss_pred CCcccccchhhhhhcCCC-cCCHHH
Confidence 99999987 666543
No 77
>PLN02882 aminoacyl-tRNA ligase
Probab=80.19 E-value=0.47 Score=52.10 Aligned_cols=55 Identities=20% Similarity=0.047 Sum_probs=34.4
Q ss_pred CCCccceeccccccCCcccccccccCC---ccCCCCcc-cccccccccccCCccccccCCCCceee
Q 022694 121 GKDHLRCLIPCAIDQDPYFRMTRDVAP---RIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIY 182 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ~~~~~laRdia~---r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~ 182 (293)
+.+| ++.-|.||.... +.+-++. -||.++|. ++.+.++..=+| +|||||.+| .|.
T Consensus 566 ~PaD---~i~eG~Dq~RgW-f~~ll~~s~~l~~~~pfk~VivhG~vlde~G--~KMSKSlGN-vId 624 (1159)
T PLN02882 566 FPAD---FVAEGLDQTRGW-FYTLMVLSTALFDKPAFKNLICNGLVLAEDG--KKMSKSLKN-YPD 624 (1159)
T ss_pred CCce---EEEEecchhhhH-HHHHHHHHHHhcCCCCcceeEEccEEECCCC--CCcccCCCC-CCC
Confidence 3465 578999998854 3332222 24555553 345777765566 799999987 553
No 78
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=77.34 E-value=0.76 Score=47.58 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=30.6
Q ss_pred eccccccCCccccc---ccccCCccCCCCcccc-cccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYFRM---TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~~l---aRdia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+.+.|.|-..++.+ |.=++ .|++.|..+ .+.++.. +| +|||||.+| .|+..|
T Consensus 287 v~~iGkDi~~fH~i~wpa~l~a--~g~~lP~~v~~hg~v~~-~G--~KMSKS~GN-vV~p~d 342 (673)
T PRK00133 287 YHFIGKDIIYFHTLFWPAMLEG--AGYRLPTNVFAHGFLTV-EG--AKMSKSRGT-FIWART 342 (673)
T ss_pred EEEEeecchhHHHHHHHHHHHh--CCCCCCCEEeeeccEEe-cC--CcccccCCc-ccCHHH
Confidence 34577777664321 22222 355566443 4666665 66 799999987 666543
No 79
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=75.70 E-value=1.2 Score=43.09 Aligned_cols=53 Identities=23% Similarity=0.170 Sum_probs=29.2
Q ss_pred ccccccCC-cccccccccCCc-cCC-CCcccccccccccccCCccccccCCCCceeeec
Q 022694 129 IPCAIDQD-PYFRMTRDVAPR-IGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVT 184 (293)
Q Consensus 129 vpvG~DQ~-~~~~laRdia~r-~n~-~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 184 (293)
--+|.|-. +|+|--+-...- +|. +-+...++.-+...+| .|||||.+| .|.+.
T Consensus 218 H~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G--~KMSKSlGN-~i~~~ 273 (384)
T PRK12418 218 QGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDG--EKMSKSRGN-LVFVS 273 (384)
T ss_pred ccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCC--CcccCcCCC-cCCHH
Confidence 35777754 455433332222 333 2223444544556677 799999987 66653
No 80
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=75.67 E-value=0.67 Score=47.72 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=30.6
Q ss_pred eccccccCCccccc---ccccCCccCCCCcccc-cccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYFRM---TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~~l---aRdia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+...|.||..++-+ +.-++ .|++.|..+ .+.++. +.| +|||||.+| .|+..|
T Consensus 257 ~~~~GkDii~fH~i~wpa~l~~--~~~~~p~~v~~hg~l~-~eg--~KMSKS~GN-~i~p~d 312 (648)
T PRK12267 257 VHLVGKDILRFHAIYWPIMLMA--LGLPLPKKVFAHGWWL-MKD--GKMSKSKGN-VVDPEE 312 (648)
T ss_pred eEEEeeeecchhHHHHHHHHHh--CCCCCCcEEEecceEE-ECC--ceecccCCc-ccCHHH
Confidence 45789999874331 11111 245566444 355543 345 799999987 776654
No 81
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=75.37 E-value=0.9 Score=44.57 Aligned_cols=142 Identities=18% Similarity=0.130 Sum_probs=83.9
Q ss_pred CCcccCCCCccceeccccccCCcccccccccCCccCCCC-cccccccccccccCCccccccCCCCceee-e---ccChHH
Q 022694 115 FPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK-PALIESSFFPALQGETGKMSASDPNSAIY-V---TDSAKA 189 (293)
Q Consensus 115 ~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~-p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L---~D~~~~ 189 (293)
++|.+.. | |+|.=|.|....--.=.-+.+.||.+. |...|.|++.+-+| +|+||.++...|. + -=.|+.
T Consensus 184 VDD~~mg---I-ThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpli~~~~g--~KLSKR~~~~~v~~~r~~G~~PeA 257 (433)
T PRK12410 184 VDDMLYD---I-SLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNEEG--KKMSKRDNASSVKWLLEQGFLPSA 257 (433)
T ss_pred hchhhcC---C-CEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEeeeeeCCCC--CeeecccChhhHHHHHHCCCCHHH
Confidence 3466543 3 689999998877655556778889876 48889999999988 7999997632221 1 116666
Q ss_pred HHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeee----------ecChHHHHHHHHhccCCCcccHHHHHHHH--
Q 022694 190 IKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF----------LEDDAELEHIKKEYGAGGMLTGEVKQRLA-- 257 (293)
Q Consensus 190 i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~----------~~~~~~~eei~~~y~~g~~~~~~lK~~la-- 257 (293)
|..-+.....+.+.. +...-+++..| ..+.+++..+...|-. .+...++...+.
T Consensus 258 i~n~l~~lG~~~~~e-------------~~~~~eli~~F~~~~i~~~~~~~d~~kL~~~N~~~i~-~~~~~~l~~~~~~~ 323 (433)
T PRK12410 258 IANYLILLGNKTPKE-------------IFTLEEAIEWFDIEKISKSPAKFDLKKLRFINREHLK-MLDDERLSKLLGFK 323 (433)
T ss_pred HHHHHHHhCCCCccc-------------ccCHHHHHHhCCHhhCCCccccCCHHHHHHHHHHHHH-hCCHHHHHHHHhhh
Confidence 766665522211100 00000011111 0045667777777764 356666665542
Q ss_pred -HHHHHHHHHHHHHHHhhhH
Q 022694 258 -KVLTELVERHQVARAAVTD 276 (293)
Q Consensus 258 -~~i~~~l~pir~~~~~~~~ 276 (293)
+.+...+.-+|+|.+.+.+
T Consensus 324 ~~~~~~~~~l~~~r~~~l~d 343 (433)
T PRK12410 324 DKDLGGLAKLYLQEASTLNE 343 (433)
T ss_pred hHHHHHHHHHHHHhcCcHHH
Confidence 3366677778888777654
No 82
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=75.35 E-value=1.2 Score=43.33 Aligned_cols=51 Identities=24% Similarity=0.178 Sum_probs=27.8
Q ss_pred cccccCC-cccccccccCCc-cCC-CCcccccccccccccCCccccccCCCCceeee
Q 022694 130 PCAIDQD-PYFRMTRDVAPR-IGY-HKPALIESSFFPALQGETGKMSASDPNSAIYV 183 (293)
Q Consensus 130 pvG~DQ~-~~~~laRdia~r-~n~-~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 183 (293)
-+|.|-. +|++.-+-...- +|. +-+-..++.-....+| +|||||.+| .|.+
T Consensus 246 ~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G--~KMSKSlGN-~i~~ 299 (411)
T TIGR03447 246 GGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDG--EKMSKSLGN-LVFV 299 (411)
T ss_pred cCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCC--CCccCcCCC-CCCH
Confidence 4677643 454433322222 333 2223444444556677 799999987 6665
No 83
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=75.13 E-value=1.1 Score=39.72 Aligned_cols=53 Identities=23% Similarity=0.092 Sum_probs=29.6
Q ss_pred cccccCC-cccccccccCCc-cCCCCcccccccccccccCCccccccCCCCceeeecc
Q 022694 130 PCAIDQD-PYFRMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 130 pvG~DQ~-~~~~laRdia~r-~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
-+|.|.. +|++.-+-.... +|.+.+..+.+.-+..++| +|||||.+| .|.+.|
T Consensus 133 ~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g--~KMSKs~Gn-~v~~~d 187 (213)
T cd00672 133 GGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDG--EKMSKSLGN-FITVRD 187 (213)
T ss_pred eecCCCCcChHHHHHHHHHHHhCCCCCcEEEEEEEEeccC--cchhhcCCC-ccCHHH
Confidence 4666654 444443322222 3433333444444556777 699999987 776654
No 84
>PLN02627 glutamyl-tRNA synthetase
Probab=74.10 E-value=1.3 Score=44.54 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=50.5
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc------ChHHHHHHhhh
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 196 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~i~~KI~k 196 (293)
|+|.=|.|....---=.-|.+.||.+.|...|.|+|.+-+| +||||.++. +.+.+ .|+.|..-+..
T Consensus 251 THViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g--~KLSKR~~~--~~v~~~r~~G~~PeAi~nyla~ 322 (535)
T PLN02627 251 THVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPDAMVNYLAL 322 (535)
T ss_pred cEEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCC--CccccccCC--ccHHHHHHCCCCHHHHHHHHHH
Confidence 68999999877655555567778999999999999999887 799999753 33332 67777776665
No 85
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=73.78 E-value=0.92 Score=45.45 Aligned_cols=54 Identities=20% Similarity=0.307 Sum_probs=31.2
Q ss_pred eccccccCCcccccc-cccCCccCCCCc-ccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYFRMT-RDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~~la-Rdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+.+.|.|...++-+- --+..-.+++.| .++.+.++. +.| +|||||.+| .|.+.|
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~-~~g--~KmSKS~Gn-~i~~~d 340 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLT-VEG--GKMSKSLGN-VVDPSD 340 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEE-ECC--ceecccCCc-eecHHH
Confidence 568999998853221 001111234445 334456654 345 799999987 776644
No 86
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=73.64 E-value=1.3 Score=45.01 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=48.8
Q ss_pred CCccceeccccccCCcccccccccCCccCCCCcc-cccccccccc-cCCccccccCCCCceeeeccChHHHHHHh
Q 022694 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPAL-QGETGKMSASDPNSAIYVTDSAKAIKNKI 194 (293)
Q Consensus 122 ~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~-~l~~~~lpgL-~g~~~KMSkS~~~s~I~L~D~~~~i~~KI 194 (293)
++|. ++--+|.||.+|+.-.+.++...|+..+. .+.+-..... .|.+.||||-.++ .|.|.|=-+++.+|-
T Consensus 333 ~~d~-~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~-~vtl~dllde~~era 405 (577)
T COG0018 333 GFDK-LIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN-VVTLDDLLDEAGERA 405 (577)
T ss_pred CCCE-EEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc-eEEHHHHHHHHHHHh
Confidence 4443 44579999999999999999999986663 3333222222 2334789999876 999988666666333
No 87
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=70.83 E-value=1.2 Score=49.24 Aligned_cols=54 Identities=24% Similarity=0.127 Sum_probs=33.7
Q ss_pred CCCccceeccccccCCcccccc---cccCCccCCCCc--ccccccccccccCCccccccCCCCceee
Q 022694 121 GKDHLRCLIPCAIDQDPYFRMT---RDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIY 182 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ~~~~~la---Rdia~r~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~ 182 (293)
+.+| +.+=|.||....-.+ .-++ -||. .| .++.|.++..-+| +|||||.+| .|.
T Consensus 672 fPaD---~i~eG~Dq~rgWf~s~l~~s~~-l~~~-~PfK~VlvHG~Vld~dG--~KMSKSlGN-vID 730 (1205)
T PTZ00427 672 FPAD---FIAEGLDQTRGWFYTLLVISTL-LFDK-APFKNLICNGLVLASDG--KKMSKRLKN-YPD 730 (1205)
T ss_pred CCce---EEEEecchhccHHHHHHHHHHH-hcCC-CCcceeEEccEEEcCCC--CCcccCCCC-CCC
Confidence 4565 578899998743221 1111 1333 45 4455778877777 799999987 553
No 88
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=70.51 E-value=0.95 Score=47.91 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=30.9
Q ss_pred CCCccceeccccccC-CcccccccccCCc------cCCCCc--ccccccccccccCCccccccCCCCceeeecc
Q 022694 121 GKDHLRCLIPCAIDQ-DPYFRMTRDVAPR------IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ-~~~~~laRdia~r------~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+.+| +...|.|| .-|+-++|-.... ....+| .++++.+| |||||.+| .|...|
T Consensus 522 ~P~D---ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v--------KMSKS~GN-~i~p~~ 583 (805)
T PRK00390 522 LPVD---QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV--------KMSKSKGN-VVDPDD 583 (805)
T ss_pred CCCc---EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE--------EeCCCCCC-CCCHHH
Confidence 4566 56899999 4555444422110 112355 34456666 99999987 665543
No 89
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=69.95 E-value=1.8 Score=40.34 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=30.9
Q ss_pred HHHHhh-cCCcEEEEeecccchhhc-----ccChHHH-HHHHHhcccchhhcccCCCceeEeecccc
Q 022694 5 RYLQDA-FKVPLVIQLTDDEKCMWK-----NLSVEES-QRLARENAKDIIACGFDVTKTFIFSDFDY 64 (293)
Q Consensus 5 k~lQ~~-~g~~~~I~iaD~ha~~~~-----~~~~~~i-~~~~~~~~~~~lA~Gldp~k~~i~~qs~~ 64 (293)
+||+.. +.+.++.-|+|..--+.+ ..++.++ +.+..++..++.++|+.|-.........+
T Consensus 38 R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i 104 (300)
T PF01406_consen 38 RYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPPDHYPRATEHI 104 (300)
T ss_dssp HHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGH
T ss_pred HHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCCccccchhccH
Confidence 677763 334556667887544432 2566664 45566788888898887654444433333
No 90
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=69.61 E-value=1.4 Score=42.73 Aligned_cols=33 Identities=39% Similarity=0.546 Sum_probs=18.4
Q ss_pred cCCCCccccc-ccccccccCCccccccCCCCceeeecc
Q 022694 149 IGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 149 ~n~~~p~~l~-~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
.|.+.|..+. +.++. ++| +|||||.+| .|+..|
T Consensus 307 ~~~~lP~~i~~~~~~~-~~g--~K~SkS~gn-~i~~~~ 340 (391)
T PF09334_consen 307 AGLPLPRRIVVHGFLT-LDG--EKMSKSRGN-VIWPDD 340 (391)
T ss_dssp CTB---SEEEEE--EE-ETT--CCEETTTTE-SSBHHH
T ss_pred ccCCCCCEEEeeeeEE-ECC--eeccccCCc-ccCHHH
Confidence 3456665443 44544 576 799999976 886643
No 91
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=69.33 E-value=1.3 Score=45.02 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=42.1
Q ss_pred eccccccCCcccccccccCCccCCCCcc---cccccccccccCCccccccCCCCceeeeccChHH
Q 022694 128 LIPCAIDQDPYFRMTRDVAPRIGYHKPA---LIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 189 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRdia~r~n~~~p~---~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~ 189 (293)
+-.+|.||..|+.-...+++.+|+..+. ++.-.+|- ++| +||||-.++ .|.|.|=-++
T Consensus 328 IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g--~kmStR~G~-~v~l~dLlde 388 (562)
T PRK12451 328 LYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDG--KKMSTRKGR-VVLLEEVLEE 388 (562)
T ss_pred EEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCC--CCCcCCCCC-eeEHHHHHHH
Confidence 3489999999999999999999975332 23334453 455 699999886 8888763333
No 92
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=68.84 E-value=2.2 Score=42.08 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=52.6
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCcee-eec---cChHHHHHHhhhcccC
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI-YVT---DSAKAIKNKINKYAFS 200 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I-~L~---D~~~~i~~KI~k~A~t 200 (293)
|+|.-|.|...+--.=.-+.+.||.+.|...|.|+|.+-+| +|+||.++..+| .+- =.|+.|..-+.....+
T Consensus 198 THViRG~d~l~~t~~q~~l~~alg~~~P~f~H~pli~~~~g--~KLSKR~g~~sv~~~r~~G~~Peai~n~la~lG~s 273 (445)
T PRK12558 198 THIIRGEDHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADG--KGLSKRLGGLSIRSLREDGIEPMAIASLLARLGTS 273 (445)
T ss_pred CEEEechhhhhCCHHHHHHHHHhCCCCCeEEEcccccCCCc--ccccccCCCcCHHHHHHCCCCHHHHHHHHHHHcCC
Confidence 68999999877655555566778889999999999999887 799999753222 111 1678788777764444
No 93
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=68.40 E-value=1.2 Score=44.33 Aligned_cols=54 Identities=15% Similarity=0.021 Sum_probs=30.7
Q ss_pred eccccccCC-cccccccccCCc-cCCCCcccccccccccccCCccccccCCCCceeeec
Q 022694 128 LIPCAIDQD-PYFRMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 184 (293)
Q Consensus 128 ~vpvG~DQ~-~~~~laRdia~r-~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 184 (293)
+--+|.|-. ||+|--+-.... .|.+-+-..++......+| +|||||.+| .|.+.
T Consensus 236 IH~GG~DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g--~KMSKSlGN-~itl~ 291 (490)
T PRK14536 236 IHIGGVDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNK--GKMSKSAGQ-FLTLS 291 (490)
T ss_pred EEeccccCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecC--ccccccCCC-cccHH
Confidence 356788854 565543333332 2333333444433345676 799999987 77763
No 94
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=67.75 E-value=1.5 Score=41.08 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=49.3
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeee------ccChHHHHHHhhh
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV------TDSAKAIKNKINK 196 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L------~D~~~~i~~KI~k 196 (293)
|+|.-|.|-...-..=.-|.+.||.+.|...|.|++.+.+| +|+||++....|.+ .++|+.+..-+++
T Consensus 201 THViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g--~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~ 274 (314)
T PF00749_consen 201 THVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDG--KKLSKRKGAKSIELGDYREWGDPPEATLNYLAR 274 (314)
T ss_dssp SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTS--SBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHH
T ss_pred CeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCC--cEechhhccccccccccccCCCCHHHHHHHHHH
Confidence 68889999887766667778889998899899999999887 79999986544322 2455555544444
No 95
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=66.23 E-value=1.9 Score=43.88 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=50.1
Q ss_pred ccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCC
Q 022694 101 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 177 (293)
Q Consensus 101 ~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~ 177 (293)
.||..+-|-. ++|.+.. | |+|..|.|...+-..=.-+.+.||.+.|...+.++ .+++| .||||+..
T Consensus 229 gyPtYdfA~v----VDD~l~g---I-THvlRg~E~l~~tp~q~~L~~aLg~~~P~~~h~~r-Ln~~g--~kLSKRkl 294 (601)
T PTZ00402 229 AYPTYDFCCP----IIDSVEG---V-THALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSR-LNMEY--SVMSKRKL 294 (601)
T ss_pred eeeccCccee----eEccccC---C-ceEeechhhhhCcHHHHHHHHHhCCCCceEEEEee-EcCCC--CcccccCC
Confidence 6677776633 2365542 3 68999999988877777788889998998888886 57887 69999975
No 96
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=66.11 E-value=1.3 Score=34.25 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=30.8
Q ss_pred eccccccCCcccccccc--cCCccCCCCcccccccccccccCCccccccCC
Q 022694 128 LIPCAIDQDPYFRMTRD--VAPRIGYHKPALIESSFFPALQGETGKMSASD 176 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRd--ia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~ 176 (293)
+++.|.|+.+++++-|. .-+.++ +.|..+..+..+ +++ ..||||+
T Consensus 59 ~~~~G~~~~~~~~~e~~~~~n~~l~-~~~e~v~~~~~~-~~~--~~iSSs~ 105 (105)
T cd02156 59 ISVCGEDFQQNRELYRWVKDNITLP-VDPEQVELPRLN-LET--TVMSKRK 105 (105)
T ss_pred HHHHHhhhhhchhHHHHHHHhcCCC-CCCeEEEccccc-cCc--eeeccCC
Confidence 47899999999999885 112232 456666655555 555 6899984
No 97
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=65.28 E-value=1.7 Score=44.96 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=35.8
Q ss_pred cccCCCCccceeccccccCC-ccc--ccccccCCccCC-CCc-ccccccccccccCCccccccCCCCceeeecc
Q 022694 117 HLFSGKDHLRCLIPCAIDQD-PYF--RMTRDVAPRIGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 117 Dil~~~ad~~~~vpvG~DQ~-~~~--~laRdia~r~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
|||....|| --+|.|-. ||+ |+|.--|- +|. +-+ ..+|+.+| .++| .|||||.+| .|.+.|
T Consensus 263 ~~lg~~~DI---h~gG~DL~FPHHeNEiAQseA~-~~~~~~v~y~~H~G~L-~i~G--~KMSKSLGN-fItp~d 328 (651)
T PTZ00399 263 NILGDPIDI---HSGGIDLKFPHHDNELAQSEAY-FDKHQWVNYFLHSGHL-HIKG--LKMSKSLKN-FITIRQ 328 (651)
T ss_pred HHcCCccee---eccCCCCCCCcchhHHHHHHHh-hCCCCCCcEEEEEEEE-Eecc--chhhhcCCC-cccHHH
Confidence 777776663 47888873 553 33333322 232 222 33444553 4676 799999987 776654
No 98
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.09 E-value=26 Score=37.19 Aligned_cols=54 Identities=22% Similarity=0.193 Sum_probs=30.8
Q ss_pred ccccccCCccc-ccccccC---CccCC---CCcc--cccccccccccCCccccccCCCCceeeecc
Q 022694 129 IPCAIDQDPYF-RMTRDVA---PRIGY---HKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 129 vpvG~DQ~~~~-~laRdia---~r~n~---~~p~--~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
-.+|.|+...+ .++|=.- .-.|+ .+|. ++...+|.+-.| .|||||.+| .|.+.+
T Consensus 530 yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g--~KMSKSKgN-~v~p~~ 592 (814)
T COG0495 530 YIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEG--EKMSKSKGN-VVDPEE 592 (814)
T ss_pred eecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCC--CccccccCC-CCCHHH
Confidence 35777776533 3333221 11222 4453 344677777666 699999987 666544
No 99
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.66 E-value=2.4 Score=44.99 Aligned_cols=29 Identities=31% Similarity=0.263 Sum_probs=20.7
Q ss_pred CCcc--cccccccccccCCccccccCCCCceeee
Q 022694 152 HKPA--LIESSFFPALQGETGKMSASDPNSAIYV 183 (293)
Q Consensus 152 ~~p~--~l~~~~lpgL~g~~~KMSkS~~~s~I~L 183 (293)
..|. ++.|.+|.+=+| .|||||.+| .|..
T Consensus 506 ~~PFk~V~ihGLVrDe~G--~KMSKS~GN-vIDP 536 (877)
T COG0525 506 EVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDP 536 (877)
T ss_pred CCCccEEEEeeeEEcCCC--CCCcccCCC-cCCH
Confidence 4563 334778887787 799999997 6544
No 100
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.99 E-value=4.6 Score=43.29 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=33.5
Q ss_pred eccccccCCccc---ccccccCCccCCCCc--ccccccccccccCCccccccCCCCceeeeccChHHHHHH
Q 022694 128 LIPCAIDQDPYF---RMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 193 (293)
Q Consensus 128 ~vpvG~DQ~~~~---~laRdia~r~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~K 193 (293)
++.=|.||..=. -+.--.| -+| ..| .++++.++..=+| .|||||.+| +| +|.+|-+|
T Consensus 558 ~~lEGsDQ~RGWF~Ssl~~s~a-~~~-~aPYk~vltHGfvlDe~G--rKMSKSlGN-~v----~P~~V~~~ 619 (933)
T COG0060 558 FYLEGSDQTRGWFYSSLLTSTA-LFG-RAPYKNVLTHGFVLDEKG--RKMSKSLGN-VV----DPQDVIDK 619 (933)
T ss_pred EEEEeccccchhHHHHHHHHHH-HcC-CchHHHHhhcccEECCCC--CCccccCCC-cC----CHHHHHHh
Confidence 467799996421 1111111 123 345 4567888877776 799999987 43 44555544
No 101
>PLN02946 cysteine-tRNA ligase
Probab=63.65 E-value=2.4 Score=43.01 Aligned_cols=51 Identities=18% Similarity=0.074 Sum_probs=28.5
Q ss_pred ccccccCC-cccccccccCCc-cCCCC-cccccccccccccCCccccccCCCCceeee
Q 022694 129 IPCAIDQD-PYFRMTRDVAPR-IGYHK-PALIESSFFPALQGETGKMSASDPNSAIYV 183 (293)
Q Consensus 129 vpvG~DQ~-~~~~laRdia~r-~n~~~-p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 183 (293)
--||.|-. ||+|--+..... .|.+- ..-+|+.+|. ++| +|||||.+| .|.+
T Consensus 281 H~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v~-~~G--~KMSKSlGN-~itl 334 (557)
T PLN02946 281 HGGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVT-VDS--EKMSKSLGN-FFTI 334 (557)
T ss_pred eccccccCCCcccchHHHHHHHhCCCCCceeeEeeEEE-eCC--CCcCCcCCC-cCCH
Confidence 46777753 566543333222 22111 1235667776 777 799999886 5544
No 102
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=63.09 E-value=2.5 Score=42.43 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=49.1
Q ss_pred ccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCC
Q 022694 101 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 176 (293)
Q Consensus 101 ~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~ 176 (293)
.||..+-|.. ++|.+.. | |+|..|.|...+-..=.-+.+.||.+.|.. +.+...++.| .||||+.
T Consensus 187 ~~PtY~fA~~----VDD~l~g---I-THviRg~E~~~~t~~q~~l~~aLg~~~P~~-~~f~rln~~~--~kLSKR~ 251 (523)
T PLN03233 187 AYPTYDLACP----IVDSIEG---V-THALRTTEYDDRDAQFFWIQKALGLRRPRI-HAFARMNFMN--TVLSKRK 251 (523)
T ss_pred ceeccCCcee----eeccccC---C-CeEEechhhhcCCHHHHHHHHHhCCCCCee-eeeEEECCCC--CcccccC
Confidence 4788877643 3365543 3 689999999888777777888899988876 5577778887 6999996
No 103
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=62.89 E-value=2.6 Score=43.64 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=18.1
Q ss_pred ccccccccccCCccccccCCCCceeeecc
Q 022694 157 IESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 157 l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+|+.+|. ++| +|||||.+| .|.+.|
T Consensus 497 mHnG~V~-vdG--eKMSKSLGN-~it~~d 521 (699)
T PRK14535 497 LHNGFIR-VDG--EKMSKSLGN-FFTIRE 521 (699)
T ss_pred EECCeEe-eCC--CccCCCCCC-cCCHHH
Confidence 4566666 777 799999987 665543
No 104
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=59.46 E-value=1.6 Score=41.67 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=43.0
Q ss_pred CCCccceeccccccCCcccccccccCCccCCC-Cc-cc--ccccccccccCCccccccCCCCceeeeccChHHHHHH
Q 022694 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KP-AL--IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 193 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~-~p-~~--l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~K 193 (293)
++.|. .+-.+|.||..|+.-...+++.+|+. +. .+ +.-.++-+-+|. .|||+..++ .|.|.|==++..++
T Consensus 236 ~~~d~-~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk-~~mstR~G~-~i~l~dllde~~~~ 309 (354)
T PF00750_consen 236 YGFDK-IIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGK-VKMSTRKGN-VITLDDLLDEAVER 309 (354)
T ss_dssp SS-SE-EEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBE-ESS-TTTTS-STBHHHHHHHHHHH
T ss_pred hcccc-EEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCC-ccccCCCCC-ceEHHHHHHHHHHH
Confidence 44553 34589999999999999999999972 21 12 223444444552 379999876 88885544444333
No 105
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=57.19 E-value=3.5 Score=41.04 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=31.0
Q ss_pred eccccccCC-cccccccccCCcc-CCCCccc-ccccccccccCCccccccCCCCceeeec
Q 022694 128 LIPCAIDQD-PYFRMTRDVAPRI-GYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVT 184 (293)
Q Consensus 128 ~vpvG~DQ~-~~~~laRdia~r~-n~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 184 (293)
+--+|.|-. ||+|.=+-.+... |.+-+-. +++.+| -++| .|||||.+| .|.+.
T Consensus 236 IH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l-~~~g--~KMSKSlGN-~i~l~ 291 (481)
T PRK14534 236 IHLGGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFL-IMEY--EKMSKSNNN-FITIK 291 (481)
T ss_pred EEecccccCCCcchhHHHHHhhhcCCCcceEEEEecEE-EecC--ceecccCCC-cccHH
Confidence 457888865 4655444433332 4333333 344444 4566 799999987 77763
No 106
>PLN02224 methionine-tRNA ligase
Probab=53.19 E-value=5.7 Score=40.83 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=28.5
Q ss_pred ccccccCCccccc---ccccCCccCCCCcccc-cccccccccCCccccccCCCCceeeecc
Q 022694 129 IPCAIDQDPYFRM---TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 129 vpvG~DQ~~~~~l---aRdia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
-.+|.|-.+++.+ |.-++ .|++.|..+ .+..+ .++| +|||||.+| .|+..|
T Consensus 325 ~~iGKDii~fH~i~wpa~l~~--~g~~~P~~i~~~g~l-~~eG--~KMSKS~GN-~i~p~e 379 (616)
T PLN02224 325 HLIGKDILRFHAVYWPAMLMS--AGLELPKMVFGHGFL-TKDG--MKMGKSLGN-TLEPFE 379 (616)
T ss_pred EEEeecccccHHHHHHHHHHH--CCCCCCcEEEecccE-ecCC--ccccccCCc-cCCHHH
Confidence 4667777664211 11111 244555433 35554 4566 799999987 776644
No 107
>PLN02610 probable methionyl-tRNA synthetase
Probab=47.65 E-value=7.9 Score=41.06 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=17.9
Q ss_pred CCccccc-ccccccccCCccccccCCCCceeeec
Q 022694 152 HKPALIE-SSFFPALQGETGKMSASDPNSAIYVT 184 (293)
Q Consensus 152 ~~p~~l~-~~~lpgL~g~~~KMSkS~~~s~I~L~ 184 (293)
+.|..+. |..+ .++| +|||||.+| .|+..
T Consensus 331 ~~p~~i~~~g~l-~~eG--~KMSKS~GN-vV~p~ 360 (801)
T PLN02610 331 TMMKTISVTEYL-NYEG--GKFSKSKGV-GVFGN 360 (801)
T ss_pred CCCCEEEeccCE-ecCC--ceecCcCCc-ccCHH
Confidence 3454443 4443 2455 799999987 77654
No 108
>PLN02859 glutamine-tRNA ligase
Probab=47.35 E-value=7.8 Score=40.79 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=49.6
Q ss_pred cccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCC
Q 022694 100 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 177 (293)
Q Consensus 100 ~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~ 177 (293)
.+||..--|.++ .|.+.. | ||+..|.|...+-..=.-+...||...|...+-++ .+++| .||||+..
T Consensus 439 ~iyPtYdFA~~v----dD~leg---I-THvLRg~E~~~~~~~y~wl~~aLg~~~P~~~~f~r-Ln~~~--t~LSKRkl 505 (788)
T PLN02859 439 CIYPSYDYAHCI----VDSLEN---I-THSLCTLEFETRRASYYWLLDSLGLYQPYVWEYSR-LNVTN--TVMSKRKL 505 (788)
T ss_pred EEEecccccccc----cccccC---C-ceEeechhhhcCCHHHHHHHHHcCCCCCcEEeeee-ECCCC--CcccCcCc
Confidence 358877666443 265542 3 79999999888776666677888888898888774 57887 69999974
No 109
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.85 E-value=16 Score=38.23 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=19.9
Q ss_pred cccccCCCCceeeeccChHHHHHHhhhcccCCCchhH
Q 022694 170 GKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV 206 (293)
Q Consensus 170 ~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~ 206 (293)
.|||||.+| ..-|..+-+..---=+|+|..|.++++
T Consensus 709 EKMSKSTGN-fmTL~qaieKFgad~tRlalAdaGD~v 744 (1080)
T KOG0437|consen 709 EKMSKSTGN-FMTLEQAIEKFGADGTRLALADAGDGV 744 (1080)
T ss_pred hhhccccCC-eeeHHHHHHHhCccceeeeeecccCCc
Confidence 799999987 555544333332222334555555554
No 110
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.51 E-value=11 Score=38.30 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=17.1
Q ss_pred cccccCCCCceeeecc-----ChHHHHHHhhh
Q 022694 170 GKMSASDPNSAIYVTD-----SAKAIKNKINK 196 (293)
Q Consensus 170 ~KMSkS~~~s~I~L~D-----~~~~i~~KI~k 196 (293)
+|||||.+| .|+..+ +++.++=-+.+
T Consensus 332 ~KmSKSrG~-~V~~~~~~~~~~~D~lRYyL~~ 362 (558)
T COG0143 332 QKMSKSRGN-VVDPDELLEQYGVDALRYYLAR 362 (558)
T ss_pred ccccccCCc-EEeHHHHHHHcCchHhHHHHHH
Confidence 799999987 777654 44445444444
No 111
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.52 E-value=25 Score=34.24 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=72.8
Q ss_pred cccccCCCCceeeeccChHHHHHHhhhcccCCCc-hh----HH-HHH--HcCCCeeeeecceeee------eeec--ChH
Q 022694 170 GKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ-ES----VE-LHR--KLGANLEVDIPVKYLS------FFLE--DDA 233 (293)
Q Consensus 170 ~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~-~~----~~-~~~--~~~~~p~~~~~~~~l~------~~~~--~~~ 233 (293)
.+||+|+++|.|.+.+.+..|..|++. +||... .. +. ... ..+.+|-. +-.++. .+.. ..+
T Consensus 232 a~~~~s~~~Sp~~~yq~~~~i~D~~~~-~~~~~~t~l~~~eI~~i~~~~~~~~~~r~--~k~~LA~e~~~~~hG~~~a~~ 308 (401)
T COG0162 232 AVWLDSEKTSPYDFYQYWMNIEDADVK-RFLKLLTFLSLEEIEEIEKYVLKGPEPRE--AKKLLAKEVTKLVHGEEAAEA 308 (401)
T ss_pred ceEccCCCCCcHhhhhcHhcCcHHHHH-HHHHHhCcCChHHHHHHHHHhhcCCChHH--HHHHHHHHhhHhhcCHHHHHH
Confidence 699999999999999999999999999 999765 11 11 111 11112211 101111 1111 245
Q ss_pred HHHHHHHhccCC---CcccHHHHH-----HHHHHHHHHHHHHHHHHHhhh
Q 022694 234 ELEHIKKEYGAG---GMLTGEVKQ-----RLAKVLTELVERHQVARAAVT 275 (293)
Q Consensus 234 ~~eei~~~y~~g---~~~~~~lK~-----~la~~i~~~l~pir~~~~~~~ 275 (293)
.+++.+..|.+| .+++.++|. .++..+...|.|.|.......
T Consensus 309 a~~~~~~~F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr~i 358 (401)
T COG0162 309 AEEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARRLI 358 (401)
T ss_pred HHHHHHHHHhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHhhc
Confidence 778899999988 899999999 888889999999998766543
No 112
>PLN02907 glutamate-tRNA ligase
Probab=36.11 E-value=11 Score=39.66 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=46.8
Q ss_pred cCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCC
Q 022694 102 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 176 (293)
Q Consensus 102 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~ 176 (293)
||..+-|.. ++|.+.. | |+|..|.|...+-..=.-+.+.||.++|....-.+ .+++| .||||+.
T Consensus 390 ~PtY~fa~~----vdD~~~g---I-ThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~-l~~~~--~~lSKR~ 453 (722)
T PLN02907 390 YPTYDFACP----FVDALEG---V-THALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSR-LNFVY--TLLSKRK 453 (722)
T ss_pred eeccCCceE----EEcccCC---C-ceEeecHhhhhChHHHHHHHHHcCCCCCeeEEEEE-EcCCC--ccccccc
Confidence 788776643 2355543 3 78999999988877777788889998886555444 36776 6999997
No 113
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=22.85 E-value=36 Score=34.58 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=44.9
Q ss_pred cCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC-CCcccccccccccccCCccccccCCC
Q 022694 102 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDP 177 (293)
Q Consensus 102 YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~-~~p~~l~~~~lpgL~g~~~KMSkS~~ 177 (293)
||..--|.+ +.|.+.. | |+|..|.|...+-..=.-+.+.||. +.|....-.+| +++| .||||+..
T Consensus 211 yPtYdfA~~----vdD~l~g---I-THvlRg~E~~~~t~~~~~i~~alg~~~~P~~~~F~rl-n~~~--~~LSKRkl 276 (554)
T PRK05347 211 YPMYDFAHC----ISDAIEG---I-THSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRL-NLTY--TVMSKRKL 276 (554)
T ss_pred ecCcCccce----eeccccC---C-ceEEeccccccChHHHHHHHHHcCCCCCCceEEEEEE-CCCC--Cccccccc
Confidence 777765533 2366543 3 6899999999887777777788874 36765553333 6777 69999974
No 114
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.39 E-value=35 Score=34.24 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=35.8
Q ss_pred cccCCCCccceeccccccCC-cccc--cccccCCccCCC--CcccccccccccccCCccccccCCCCceeeecc-----C
Q 022694 117 HLFSGKDHLRCLIPCAIDQD-PYFR--MTRDVAPRIGYH--KPALIESSFFPALQGETGKMSASDPNSAIYVTD-----S 186 (293)
Q Consensus 117 Dil~~~ad~~~~vpvG~DQ~-~~~~--laRdia~r~n~~--~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~ 186 (293)
+||+.+-|| =-||.|=. ||++ +|.--|. |..+ .-..+|+.-|- ..| .|||||..| .|-+-+ +
T Consensus 253 ~~lG~~lDI---H~GG~DL~FPHHeNEiAQ~eA~-~~~~~wVnYflHtGhL~-i~g--~KMSKSLkN-FiTIke~Lk~~s 324 (586)
T KOG2007|consen 253 AILGSQLDI---HGGGIDLAFPHHENEIAQSEAA-FDDSQWVNYFLHTGHLT-ING--EKMSKSLKN-FITIKEALKKYS 324 (586)
T ss_pred Hhhccccce---ecCcccccCCCcccHHHHHHHH-hcCCccceeEEEcCeee-ecc--chhhhhhcc-ceeHHHHHHhcC
Confidence 566666553 36777754 4443 3332221 2211 01234433221 234 799999987 776644 5
Q ss_pred hHHHHHHhhh
Q 022694 187 AKAIKNKINK 196 (293)
Q Consensus 187 ~~~i~~KI~k 196 (293)
|.+.+--.+.
T Consensus 325 p~qLRl~fl~ 334 (586)
T KOG2007|consen 325 PRQLRLAFLL 334 (586)
T ss_pred HHHHHHHHHH
Confidence 5555543333
No 115
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=20.55 E-value=1.3e+02 Score=24.90 Aligned_cols=81 Identities=20% Similarity=0.160 Sum_probs=44.8
Q ss_pred ccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHH
Q 022694 159 SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238 (293)
Q Consensus 159 ~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei 238 (293)
..+++||+.- .|||.+-..-.|. -+|-.-| +.|.||++- -+-| -+.-.-
T Consensus 51 ~tLv~~L~~l-~~~s~k~n~i~IP-----leVl~yI----------------ddGrNPd~y-----tke~----le~~~~ 99 (147)
T KOG3046|consen 51 NTLVRGLQDL-DKLSSKLNDIQIP-----LEVLEYI----------------DDGRNPDLY-----TKEF----LEKCLA 99 (147)
T ss_pred HHHHHHhhhh-HHHHHhhccccCc-----HHHHHHH----------------hcCCCccHH-----HHHH----HHHHHH
Confidence 4678888874 6888765422333 2333333 347788761 1112 112223
Q ss_pred HHhccCCCcc-cHHHHHHHHHHHHHHHHHHHHH
Q 022694 239 KKEYGAGGML-TGEVKQRLAKVLTELVERHQVA 270 (293)
Q Consensus 239 ~~~y~~g~~~-~~~lK~~la~~i~~~l~pir~~ 270 (293)
...|..|+++ ...+++.|++.|.+.+=..-+.
T Consensus 100 kNq~vkGK~~~~K~fr~~l~eEl~q~fPe~~~~ 132 (147)
T KOG3046|consen 100 KNQYVKGKIDAFKKFRKHLAEELSQEFPELVDP 132 (147)
T ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHChHHHHH
Confidence 4556678765 5668888888776655433333
No 116
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=20.52 E-value=1.2e+02 Score=21.88 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=17.6
Q ss_pred HHHHhccCCCcccHHHHHHHHHHHHHHH
Q 022694 237 HIKKEYGAGGMLTGEVKQRLAKVLTELV 264 (293)
Q Consensus 237 ei~~~y~~g~~~~~~lK~~la~~i~~~l 264 (293)
|+..+|.. ...-|.|+.|++.+...+
T Consensus 1 eLC~dYse--~tFtEyKKrL~e~l~~k~ 26 (68)
T PF09164_consen 1 ELCADYSE--NTFTEYKKRLAERLRAKL 26 (68)
T ss_dssp HHTTTTTT--S-HHHHHHHHHHHHHHH-
T ss_pred Ccchhhhh--ccHHHHHHHHHHHHHHHC
Confidence 45667764 468899999998875543
No 117
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=20.28 E-value=2.9e+02 Score=18.99 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q 022694 255 RLAKVLTELVERHQVARAAVTDE 277 (293)
Q Consensus 255 ~la~~i~~~l~pir~~~~~~~~~ 277 (293)
.|+..|..+|..++.||+...+.
T Consensus 3 elt~~v~~lL~qmq~kFq~mS~~ 25 (54)
T PF06825_consen 3 ELTAFVQNLLQQMQDKFQTMSDQ 25 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888899999999887775
Done!