Query 022694
Match_columns 293
No_of_seqs 183 out of 1197
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 09:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tze_A Tryptophanyl-tRNA synth 100.0 8.1E-75 2.8E-79 552.7 6.4 282 2-288 125-406 (406)
2 3hzr_A Tryptophanyl-tRNA synth 100.0 6.5E-74 2.2E-78 543.7 6.6 282 2-288 105-386 (386)
3 3i05_A Tryptophanyl-tRNA synth 100.0 9.7E-74 3.3E-78 544.4 3.0 285 2-289 102-387 (395)
4 3hv0_A Tryptophanyl-tRNA synth 100.0 3.3E-73 1.1E-77 540.4 4.0 287 2-290 98-385 (393)
5 3foc_A Tryptophanyl-tRNA synth 100.0 7.1E-72 2.4E-76 536.8 8.1 286 2-288 115-450 (451)
6 3jxe_A Tryptophanyl-tRNA synth 100.0 7.2E-72 2.5E-76 530.7 6.4 272 2-288 96-370 (392)
7 1r6u_A Tryptophanyl-tRNA synth 100.0 2.5E-68 8.5E-73 512.2 5.8 287 5-291 134-422 (437)
8 1r6t_A Tryptophanyl-tRNA synth 100.0 5E-68 1.7E-72 516.2 6.2 288 2-290 179-468 (477)
9 2ip1_A Tryptophanyl-tRNA synth 100.0 1.7E-67 5.9E-72 506.9 7.5 284 2-289 126-413 (432)
10 3sz3_A Tryptophanyl-tRNA synth 100.0 3.5E-67 1.2E-71 491.0 -3.2 262 5-286 30-316 (341)
11 3a04_A Tryptophanyl-tRNA synth 100.0 4.5E-65 1.5E-69 482.5 7.7 271 5-287 95-371 (372)
12 3n9i_A Tryptophanyl-tRNA synth 100.0 3.9E-66 1.3E-70 484.1 -1.0 262 4-286 38-321 (346)
13 3prh_A Tryptophanyl-tRNA synth 100.0 2.2E-65 7.4E-70 484.9 3.1 258 5-286 61-337 (388)
14 3tzl_A Tryptophanyl-tRNA synth 100.0 5.4E-64 1.9E-68 467.1 2.1 255 5-286 29-301 (322)
15 2yy5_A Tryptophanyl-tRNA synth 100.0 1.8E-63 6.3E-68 468.0 0.9 260 5-286 28-321 (348)
16 2g36_A Tryptophanyl-tRNA synth 100.0 4.7E-63 1.6E-67 463.9 3.5 262 6-286 39-317 (340)
17 1i6k_A TRPRS, tryptophanyl-tRN 100.0 3.3E-63 1.1E-67 463.0 1.6 258 5-286 25-303 (328)
18 2el7_A Tryptophanyl-tRNA synth 100.0 1.3E-61 4.4E-66 453.8 6.4 260 5-286 25-306 (337)
19 1yi8_B Tryptophanyl-tRNA synth 100.0 3.3E-62 1.1E-66 459.9 2.3 263 5-286 46-327 (351)
20 3vgj_A Tyrosyl-tRNA synthetase 100.0 2.7E-60 9.4E-65 449.7 5.8 257 5-282 82-366 (373)
21 2cya_A Tyrosyl-tRNA synthetase 100.0 1.5E-58 5E-63 437.2 4.8 246 5-274 60-348 (364)
22 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.3E-58 4.3E-63 439.0 4.3 254 5-282 59-371 (375)
23 2j5b_A Tyrosyl-tRNA synthetase 100.0 9.7E-58 3.3E-62 429.2 3.0 254 5-281 66-338 (348)
24 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.6E-57 5.4E-62 458.8 3.9 269 5-286 66-362 (690)
25 2cyb_A Tyrosyl-tRNA synthetase 100.0 4.7E-55 1.6E-59 407.8 5.1 242 5-273 57-321 (323)
26 1n3l_A Tyrosyl-tRNA synthetase 100.0 2.6E-53 8.7E-58 402.6 5.8 246 5-272 60-329 (372)
27 2zp1_A Tyrosyl-tRNA synthetase 100.0 2.5E-53 8.5E-58 394.4 4.6 236 5-273 53-308 (314)
28 2dlc_X Tyrosyl-tRNA synthetase 100.0 4.6E-52 1.6E-56 396.6 6.9 262 5-284 64-352 (394)
29 2yxn_A Tyrosyl-tRNA synthetase 100.0 1.5E-51 5.2E-56 383.6 -0.1 234 5-273 59-320 (322)
30 1h3f_A Tyrosyl-tRNA synthetase 100.0 2.6E-51 8.8E-56 394.5 -1.7 242 5-285 63-326 (432)
31 3p0j_A Tyrosyl-tRNA synthetase 100.0 6.3E-50 2.1E-54 403.6 6.2 246 5-275 408-672 (690)
32 2jan_A Tyrosyl-tRNA synthetase 100.0 2.3E-49 8E-54 380.1 0.2 237 5-275 58-319 (432)
33 2pid_A Tyrosyl-tRNA synthetase 100.0 1.6E-48 5.6E-53 367.2 0.5 235 5-275 72-341 (356)
34 2ts1_A Tyrosyl-tRNA synthetase 100.0 1.2E-47 4E-52 367.5 1.2 233 5-274 56-316 (419)
35 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 1.2E-46 4.2E-51 361.2 2.1 234 5-274 58-317 (420)
36 1y42_X Tyrosyl-tRNA synthetase 100.0 9.5E-47 3.2E-51 358.9 -0.8 236 5-275 90-380 (392)
37 2cfo_A Glutamyl-tRNA synthetas 97.5 3.2E-05 1.1E-09 75.3 1.9 72 127-200 205-280 (492)
38 1nzj_A Hypothetical protein YA 97.3 5.2E-05 1.8E-09 69.3 1.6 60 128-189 187-246 (298)
39 1j09_A Glutamyl-tRNA synthetas 97.3 2.5E-05 8.7E-10 75.6 -0.5 179 5-200 25-276 (468)
40 3al0_C Glutamyl-tRNA(Gln) amid 97.3 0.00017 6E-09 71.6 4.5 66 127-196 317-388 (592)
41 3afh_A Glutamyl-tRNA synthetas 97.1 0.00013 4.3E-09 71.0 1.3 66 127-196 213-284 (488)
42 2ja2_A Glutamyl-tRNA synthetas 96.9 0.00021 7E-09 69.7 1.2 67 128-196 211-286 (498)
43 3fnr_A Arginyl-tRNA synthetase 93.9 0.0062 2.1E-07 58.8 -1.6 56 129-185 240-298 (464)
44 2csx_A Methionyl-tRNA syntheta 93.2 0.0074 2.5E-07 58.4 -2.4 54 128-185 253-308 (497)
45 2d5b_A Methionyl-tRNA syntheta 92.8 0.01 3.4E-07 57.4 -2.1 53 128-185 254-310 (500)
46 2o5r_A Glutamyl-tRNA synthetas 92.5 0.012 4.2E-07 57.0 -1.9 66 127-196 220-291 (481)
47 1ffy_A Isoleucyl-tRNA syntheta 89.8 0.045 1.5E-06 57.0 -1.0 57 121-184 547-607 (917)
48 2x1l_A Methionyl-tRNA syntheta 89.6 0.022 7.7E-07 55.3 -3.3 54 128-185 268-323 (524)
49 3kfl_A Methionyl-tRNA syntheta 89.5 0.035 1.2E-06 54.7 -2.1 52 128-185 297-352 (564)
50 1gax_A Valrs, valyl-tRNA synth 88.9 0.043 1.5E-06 56.8 -1.9 57 121-185 480-541 (862)
51 4dlp_A Aminoacyl-tRNA syntheta 87.9 0.051 1.8E-06 53.0 -2.0 52 128-185 279-334 (536)
52 3c8z_A Cysteinyl-tRNA syntheta 87.0 0.057 1.9E-06 51.1 -2.3 52 128-183 247-302 (414)
53 1irx_A Lysyl-tRNA synthetase; 86.9 0.034 1.2E-06 54.3 -4.0 65 130-196 235-308 (523)
54 1li5_A Cysrs, cysteinyl-tRNA s 86.6 0.072 2.5E-06 51.2 -1.8 64 128-196 223-295 (461)
55 1ile_A Ilers, isoleucyl-tRNA s 86.5 0.073 2.5E-06 54.7 -1.9 53 128-184 547-603 (821)
56 3u1f_A Methionyl-tRNA syntheta 86.4 0.061 2.1E-06 52.4 -2.4 52 128-185 281-336 (542)
57 3h99_A Methionyl-tRNA syntheta 84.8 0.077 2.6E-06 52.1 -2.6 53 129-185 304-358 (560)
58 1wkb_A Leucyl-tRNA synthetase; 82.9 0.15 5.2E-06 52.2 -1.5 58 121-185 602-663 (810)
59 1wz2_A Leucyl-tRNA synthetase; 82.0 0.38 1.3E-05 50.4 1.0 57 121-184 602-662 (967)
60 4arc_A Leucine--tRNA ligase; l 80.4 0.25 8.5E-06 51.2 -1.0 40 121-163 542-590 (880)
61 4g6z_A Glutamate-tRNA ligase; 80.0 0.31 1.1E-05 47.2 -0.4 68 127-196 222-293 (490)
62 1iq0_A Arginyl-tRNA synthetase 79.8 0.16 5.5E-06 50.3 -2.6 52 130-185 352-407 (592)
63 4gri_A Glutamate--tRNA ligase; 78.2 0.37 1.3E-05 46.9 -0.5 50 127-178 231-280 (512)
64 3tqo_A Cysteinyl-tRNA syntheta 77.5 0.15 5.1E-06 49.0 -3.5 53 128-185 226-282 (462)
65 2v0c_A Aminoacyl-tRNA syntheta 77.0 0.41 1.4E-05 49.6 -0.6 14 170-184 636-649 (878)
66 3foc_A Tryptophanyl-tRNA synth 73.2 0.78 2.7E-05 43.9 0.3 24 117-140 223-248 (451)
67 3aii_A Glutamyl-tRNA synthetas 72.2 0.42 1.4E-05 46.9 -1.8 49 127-178 288-336 (553)
68 2zue_A Arginyl-tRNA synthetase 66.9 0.46 1.6E-05 47.4 -3.0 54 128-185 380-439 (629)
69 3sp1_A Cysteinyl-tRNA syntheta 66.4 0.5 1.7E-05 45.8 -2.7 52 128-183 256-310 (501)
70 1rqg_A Methionyl-tRNA syntheta 66.1 1.5 5E-05 44.4 0.5 42 151-196 326-373 (722)
71 1f7u_A Arginyl-tRNA synthetase 50.7 1.4 4.7E-05 43.8 -2.7 50 130-185 370-420 (607)
72 1qtq_A GLNRS, protein (glutami 48.9 3.2 0.00011 40.6 -0.4 54 5-66 50-104 (553)
73 3ci9_A Heat shock factor-bindi 25.9 1.3E+02 0.0044 19.3 4.6 24 254-277 5-28 (48)
74 2hz7_A Glutaminyl-tRNA synthet 24.1 11 0.00037 38.8 -1.3 54 5-66 90-144 (851)
No 1
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=8.1e-75 Score=552.70 Aligned_cols=282 Identities=43% Similarity=0.793 Sum_probs=261.8
Q ss_pred cchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheee
Q 022694 2 FTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 81 (293)
Q Consensus 2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t 81 (293)
++ +|||+++||+++|+|||+||+++++.+++++++|+++++++|+|||+||+|++||.||+|++ +++..+++|+|++|
T Consensus 125 ~~-~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qs~~~~-~~~~~~~~L~r~~t 202 (406)
T 3tze_A 125 LC-KYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEASH-HFEENILKISKTIN 202 (406)
T ss_dssp HH-HHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGG-GGHHHHHHHHHTCB
T ss_pred HH-HHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccHhHH-HHHHHHHHHHhhCC
Confidence 45 89999889999999999999987669999999999999999999999999999999999986 88999999999999
Q ss_pred ecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccc
Q 022694 82 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF 161 (293)
Q Consensus 82 ~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~ 161 (293)
++++++++|+.++.++|+|+||+|||||+++++||.|+.+++ |+||||.||++|+++|||+|+|||+++|.++++|+
T Consensus 203 ~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a---~lvpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~ 279 (406)
T 3tze_A 203 LNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAM---CLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSL 279 (406)
T ss_dssp HHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCE---EEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECC
T ss_pred HHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCC---eEEeeccchHHHHHHHHHHHHHcCCCCceeeccCc
Confidence 999999998878899999999999999999999999998777 68999999999999999999999999999999999
Q ss_pred cccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHHh
Q 022694 162 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241 (293)
Q Consensus 162 lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~~ 241 (293)
||||+|+++|||||+|+|+|+|+|+|++|++|||+||+|||+.+.+++++.|+||++|+++.|+++|+.+++++++|+++
T Consensus 280 l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~ 359 (406)
T 3tze_A 280 LPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSG 359 (406)
T ss_dssp CCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHH
Confidence 99999976799999988899999999999999999999999998888888999999999999999997668899999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCC
Q 022694 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288 (293)
Q Consensus 242 y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~ 288 (293)
|++|+++|++||+.||+.|+++|+|||+||++++++.|++++..+++
T Consensus 360 y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~ 406 (406)
T 3tze_A 360 YIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406 (406)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCGGGC
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcCCC
Confidence 99999999999999999999999999999999999999999998764
No 2
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=6.5e-74 Score=543.72 Aligned_cols=282 Identities=30% Similarity=0.632 Sum_probs=266.6
Q ss_pred cchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheee
Q 022694 2 FTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 81 (293)
Q Consensus 2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t 81 (293)
++ +|||+++||+++|+|+|+||++.++.+++++++|+++++++|+|||+||+|++||.||+|++ .++..+++|+|++|
T Consensus 105 ~~-~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~-~~~~~~~~l~r~~t 182 (386)
T 3hzr_A 105 FA-RYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG-KMYRTISLVEKATA 182 (386)
T ss_dssp HH-HHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH-HHHHHHHHHHHHCB
T ss_pred HH-HHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH-HHHHHHHHHHhhcc
Confidence 45 89999889999999999999998669999999999999999999999999999999999986 88899999999999
Q ss_pred ecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccccc
Q 022694 82 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF 161 (293)
Q Consensus 82 ~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~ 161 (293)
++++++++|+.++.++|+|+||+|||||+++++|||||.++ ++|+||||.||+||+++|||+|+|||+++|.++++++
T Consensus 183 ~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~--~a~~VpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~ 260 (386)
T 3hzr_A 183 YNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKM 260 (386)
T ss_dssp HHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSC--CEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECC
T ss_pred HHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCC--CccccccccchHHHHHHHHHHHHHcCCCCceEeecCe
Confidence 99999999888889999999999999999999999999886 2279999999999999999999999999998889999
Q ss_pred cccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHHh
Q 022694 162 FPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241 (293)
Q Consensus 162 lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~~ 241 (293)
||||+|+ +|||||+++|+|+|+|+|++|++|||++||||++.|++++++.|++|+++++++|+++|+.+++++++|+++
T Consensus 261 l~gLdG~-~KMSKSd~~~~I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~~~~~eei~~~ 339 (386)
T 3hzr_A 261 VPLLSGV-TKFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEK 339 (386)
T ss_dssp CCCTTCT-TCCCCCCTTTSCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSCHHHHHHHHHH
T ss_pred eeCCCCC-CccCcCCCCCeeecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCChhhHHHHHHH
Confidence 9999997 499999988999999999999999999899999999999999999999999999999987667899999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCC
Q 022694 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288 (293)
Q Consensus 242 y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~ 288 (293)
|++|+++|++||+.||+.|+++|+|||+||++++++.|++++..+++
T Consensus 340 ~~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~~~~~~~~~ 386 (386)
T 3hzr_A 340 YSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTKF 386 (386)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999999999999999999999999999987653
No 3
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=9.7e-74 Score=544.35 Aligned_cols=285 Identities=53% Similarity=0.912 Sum_probs=229.9
Q ss_pred cchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheee
Q 022694 2 FTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 81 (293)
Q Consensus 2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t 81 (293)
++ +|||+++||+++|+|||+|++++++.+++++++|+++++++|+|||+||+|++||.||+|.+ .|+..+++|+|++|
T Consensus 102 ~~-~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~-~~~~~v~~l~r~~t 179 (395)
T 3i05_A 102 FT-KWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYMG-CMYRTVAKIERAFT 179 (395)
T ss_dssp HH-HHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHTT-TSHHHHHHHHHHSB
T ss_pred HH-HHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHHH-HHHHHHHHHHhhCC
Confidence 45 89999889999999999998887679999999999999999999999999999999999986 78899999999999
Q ss_pred ecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCC-CccceeccccccCCcccccccccCCccCCCCccccccc
Q 022694 82 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 160 (293)
Q Consensus 82 ~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~-ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~ 160 (293)
++++++++|+.++.++|+|+||+|||||++.++||||++++ .+.+|+||||.||+||+++|||+|+|||+++|.++++|
T Consensus 180 ~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~ 259 (395)
T 3i05_A 180 ASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSK 259 (395)
T ss_dssp HHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEEC
T ss_pred HHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHHHHHcCCCCceeeccc
Confidence 99999999888889999999999999999999999999998 22347999999999999999999999999999999999
Q ss_pred ccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHH
Q 022694 161 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240 (293)
Q Consensus 161 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~ 240 (293)
+||||+|+++||||| ++|+|+|+|+|++|++|||++||||++.+.+++++.|+||++|++|+|+++|+.+++++++|++
T Consensus 260 ~l~gLdG~~~KMSKS-~~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~~~~eei~~ 338 (395)
T 3i05_A 260 FFPGLSGPKGKMSSS-SGTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKK 338 (395)
T ss_dssp CCCCC--------------CCBTTCCHHHHHHHHC----------------------CCHHHHHHHHHCCCSHHHHHHCC
T ss_pred cccCCCCCcccCCCC-CCCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCChhhHHHHHH
Confidence 999999987899999 7789999999999999999989999999888888999999999999999999767889999999
Q ss_pred hccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCC
Q 022694 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP 289 (293)
Q Consensus 241 ~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~ 289 (293)
+|++|+++|++||+.|++.|+++|+|||+||++++++.|++++..+++.
T Consensus 339 ~y~~G~l~~g~lK~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~ 387 (395)
T 3i05_A 339 EYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMG 387 (395)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCT
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhChhccc
Confidence 9999999999999999999999999999999999999999999988763
No 4
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=3.3e-73 Score=540.42 Aligned_cols=287 Identities=53% Similarity=0.926 Sum_probs=255.2
Q ss_pred cchHHHHhhcCCcEEEEeecccchhhc-ccChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhhee
Q 022694 2 FTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV 80 (293)
Q Consensus 2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~-~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~ 80 (293)
++ +|||+++||+++|+|||+||++.+ ..+++++++++++++++|+|||+||+|++||.||+|++ .++..+++|+|++
T Consensus 98 ~~-~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~-~~~~~~~~l~r~~ 175 (393)
T 3hv0_A 98 FT-KYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA-ELYPDILRIEKKI 175 (393)
T ss_dssp HH-HHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHH-HHHHHHHHHHHHS
T ss_pred HH-HHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHHH-HHHHHHHHHHccC
Confidence 35 899998899999999999998876 49999999999999999999999999999999999985 5688899999999
Q ss_pred eecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCccccccc
Q 022694 81 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 160 (293)
Q Consensus 81 t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~ 160 (293)
|++++++++|+.++.++|+|+||+|||||+++.+||.++..++|++|+||||.||++|+++|||+|+|||+++|.++++|
T Consensus 176 t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~ 255 (393)
T 3hv0_A 176 SCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSI 255 (393)
T ss_dssp BHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEEC
T ss_pred CHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHHHHcCCCCceeeccC
Confidence 99999999988888999999999999999888888888877888889999999999999999999999999999999999
Q ss_pred ccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHH
Q 022694 161 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKK 240 (293)
Q Consensus 161 ~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~ 240 (293)
+||||+|+++|||||.+||+|+|+|+|++|++|||++|+||++.+.+++++.|+||++|++|+|+++|+.+++++++|++
T Consensus 256 ~l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~eei~~ 335 (393)
T 3hv0_A 256 FLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGK 335 (393)
T ss_dssp CCCC-------------CCCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHHHHHHHHH
T ss_pred cccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChhHHHHHHH
Confidence 99999998789999999889999999999999999999999998887777889999999999999998767889999999
Q ss_pred hccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCCC
Q 022694 241 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 290 (293)
Q Consensus 241 ~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~~ 290 (293)
+|++|+++|++||+.|++.|+++|+|+|+||++++++.|+++|..+++.+
T Consensus 336 ~y~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~~ 385 (393)
T 3hv0_A 336 KYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKSREQL 385 (393)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCCCCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCcCHHHH
Confidence 99999999999999999999999999999999999999999999998743
No 5
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=7.1e-72 Score=536.79 Aligned_cols=286 Identities=48% Similarity=0.808 Sum_probs=268.8
Q ss_pred cchHHHHhhcCCcEEEEeecccchhhcc-cChHHHHHHHHhcccchhhcccCCCceeEeecccccc-hhhhhhHHhhhhe
Q 022694 2 FTNRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKC 79 (293)
Q Consensus 2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~-~~~~~~~~~l~r~ 79 (293)
++ +|||+++||+++|+|+|+||++.++ .+++++++|+++++++|+|||+||++++||.||+|++ .+++..+.+|+|+
T Consensus 115 ~l-~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~r~ 193 (451)
T 3foc_A 115 FT-KYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRM 193 (451)
T ss_dssp HH-HHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHHHT
T ss_pred HH-HHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHHhh
Confidence 35 8999988999999999999999864 8999999999999999999999999999999999997 7899999999999
Q ss_pred eeecceeeeccccCCccccccccCCcccCCCCCCCC----------------------------------CcccCCCCc-
Q 022694 80 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF----------------------------------PHLFSGKDH- 124 (293)
Q Consensus 80 ~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~----------------------------------~Dil~~~ad- 124 (293)
+|+++++++.++.++.++|+|+||+|||||++++.| .|||+++++
T Consensus 194 ~Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 273 (451)
T 3foc_A 194 LPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHV 273 (451)
T ss_dssp CCHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHHHH
T ss_pred CCHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhhhhccc
Confidence 999999999998888999999999999999987777 268888887
Q ss_pred -------------cceeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeeccChHHHH
Q 022694 125 -------------LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 191 (293)
Q Consensus 125 -------------~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~ 191 (293)
++|+||||+||+||+++||++|+|||+++|.++++++||||+|+++|||||++||+|+|+|+|++|+
T Consensus 274 ~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~p~~I~ 353 (451)
T 3foc_A 274 VEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIK 353 (451)
T ss_dssp HHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCCHHHHH
T ss_pred chhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCCHHHHH
Confidence 7899999999999999999999999999999999999999999877999999998999999999999
Q ss_pred HHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 022694 192 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVAR 271 (293)
Q Consensus 192 ~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~ 271 (293)
+|||++|+||++.+.++++++|+||++|++|.|+.+|+.+++++++|+++|++|+++|++||+.|++.|+++|+|||+||
T Consensus 354 kKI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~ 433 (451)
T 3foc_A 354 NKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERR 433 (451)
T ss_dssp HHHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCCccchhcccCCCCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999789999988888889999999999999999997678899999999999999999999999999999999999999
Q ss_pred HhhhHHHHHhhhcccCC
Q 022694 272 AAVTDEMVDAFMAVRPL 288 (293)
Q Consensus 272 ~~~~~~~l~~il~~~~~ 288 (293)
++++++.|++++..+++
T Consensus 434 ~~l~~d~v~~f~~~~~~ 450 (451)
T 3foc_A 434 DKVDTTMIESFTVKKEL 450 (451)
T ss_dssp HTCCHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHhhCcccC
Confidence 99999999999998875
No 6
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.2e-72 Score=530.67 Aligned_cols=272 Identities=39% Similarity=0.682 Sum_probs=238.5
Q ss_pred cchHHHHhhcCCcEEEEeecccchhhcc-cChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhhee
Q 022694 2 FTNRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV 80 (293)
Q Consensus 2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~ 80 (293)
++ +|||+++||.++|+||||||+++++ .+++++++++++++++|+|||+||+|++||.||+|++ ++..+..|++++
T Consensus 96 ~~-~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~--~~~~~~~l~~~~ 172 (392)
T 3jxe_A 96 AT-KWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFTK--IYEMAIPIAKKI 172 (392)
T ss_dssp HH-HHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTSTH--HHHHHHHHHHHS
T ss_pred HH-HHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhHH--HHHHHHHHHhhC
Confidence 35 8999977999999999999999866 8999999999999999999999999999999999986 888899999999
Q ss_pred eecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCC-CccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694 81 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 159 (293)
Q Consensus 81 t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~-ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~ 159 (293)
|+++++++.++.++.++|+|+||+|||| |||.++ + |+||||.||+||+++|||+|+|||+++|.++++
T Consensus 173 t~~~~~~~~~~~~~~~~g~f~YP~LQaa--------Dil~~~~a---~~vpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~ 241 (392)
T 3jxe_A 173 NFSMAKAVFGFTEQSKIGMIFFPAIQIA--------PTFFERKR---CLIPAAIDQDPYWRLQRDFAESLGYYKTAALHS 241 (392)
T ss_dssp BHHHHHHHHCCCTTSBHHHHHHHHHHHG--------GGGSSSSC---EEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEE
T ss_pred CHHHHhhhhccCCCCchHHHHHHHHHHh--------hHHhhcCC---ceeecccchHHHHHHHHHHHHHcCCCCCeeeec
Confidence 9999999988888899999999999999 899994 6 689999999999999999999999999999999
Q ss_pred cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeee-cChHHHHHH
Q 022694 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHI 238 (293)
Q Consensus 160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~eei 238 (293)
++||||+|+++|||||++||+|+|+|+|++|++|||+||+||+..+.+++++.|+||++|++++|+.+|+ .+++++++|
T Consensus 242 ~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~~~~~eel 321 (392)
T 3jxe_A 242 KFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKER 321 (392)
T ss_dssp CCCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHHHTCC--------------------CHHHHHHHHTTCCCHHHHHHH
T ss_pred ccccCCCCCccccccCCCCCeeeCCCCHHHHHHHHHhhccCCCCcccccccccCCCCchhHHHHHHHHHHcCCcchHHHH
Confidence 9999999987899999999999999999999999999999999988888888899999999999999986 468899999
Q ss_pred HHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCC
Q 022694 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288 (293)
Q Consensus 239 ~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~ 288 (293)
+++|++|+++|++||+.||++|+++|+|||+||++++ ++|++++..+++
T Consensus 322 ~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~-~~v~~~l~~g~~ 370 (392)
T 3jxe_A 322 YYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE-KLVEKFKYTGKL 370 (392)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSHHHHHTTSHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcc
Confidence 9999999999999999999999999999999999999 699999998875
No 7
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=2.5e-68 Score=512.25 Aligned_cols=287 Identities=62% Similarity=1.063 Sum_probs=262.3
Q ss_pred HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch--hhhhhHHhhhheeee
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG--AFYKNMVKVAKCVTY 82 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~--~~~~~~~~l~r~~t~ 82 (293)
+|||+.+||.++|+|||+||++++..+++++++|+++++++|+|||+||+|++||.||+|++. +++..+++|+||+++
T Consensus 134 ~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~nSd~~~~l~~~~~l~~~v~rm~~~ 213 (437)
T 1r6u_A 134 KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTF 213 (437)
T ss_dssp HHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGGGCTTHHHHHHHHHHTCBH
T ss_pred HHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEechhhhhhHHHHHHHHHHHHhhccH
Confidence 899997799999999999999986589999999999999999999999999999999999863 789999999999999
Q ss_pred cceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCccccccccc
Q 022694 83 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFF 162 (293)
Q Consensus 83 ~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~l 162 (293)
+++++++++.++.++|+|+||+|||||++...++-.+..+...+|+||||.||++|++++|++|+|||+++|.++++|+|
T Consensus 214 ~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i~l~Rdla~r~~~~~P~~l~~pll 293 (437)
T 1r6u_A 214 NQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFF 293 (437)
T ss_dssp HHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCC
T ss_pred HHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHHHHHHHHHHHHhCCCCceEeecccc
Confidence 99999988777889999999999999655444433333233444899999999999999999999999999999999999
Q ss_pred ccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHHHhc
Q 022694 163 PALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242 (293)
Q Consensus 163 pgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~~~y 242 (293)
|||+|+++|||||.+||+|+|+|+|++|++||++|||||+..+.+++++.|+||++|+++.|+++|+.+++++++|+++|
T Consensus 294 ~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~ 373 (437)
T 1r6u_A 294 PALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDY 373 (437)
T ss_dssp EETTEEEEECCTTSSSSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred cCCCCCccccCCCCCCCeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHcCCHhHHHHHHHHH
Confidence 99999767999999988999999999999999999999998888888889999999999999999876789999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCCCC
Q 022694 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNM 291 (293)
Q Consensus 243 ~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~~~ 291 (293)
.+|+++++++|+.||+.|+++|+|+|+||++++++.|++++..+++.+.
T Consensus 374 ~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~~ 422 (437)
T 1r6u_A 374 TSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFD 422 (437)
T ss_dssp HHTSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCCCSCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcc
Confidence 9998999999999999999999999999999999889999999988653
No 8
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=5e-68 Score=516.16 Aligned_cols=288 Identities=63% Similarity=1.081 Sum_probs=263.1
Q ss_pred cchHHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccc--hhhhhhHHhhhhe
Q 022694 2 FTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKC 79 (293)
Q Consensus 2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~--~~~~~~~~~l~r~ 79 (293)
++ +|||+.+||.++|+|||+||++++..+++++++|+++++++|+|||+||+|++||.||+|++ .+++..+++|+|+
T Consensus 179 ~~-~~lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~nsd~~~~l~~~~~~~~~l~r~ 257 (477)
T 1r6t_A 179 FT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKH 257 (477)
T ss_dssp HH-HHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHGGGCTTHHHHHHHHHHT
T ss_pred HH-HHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEechhhhcccHHHHHHHHHHHhh
Confidence 35 89999779999999999999998558999999999999999999999999999999999986 3799999999999
Q ss_pred eeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694 80 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 159 (293)
Q Consensus 80 ~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~ 159 (293)
+|++++++++++.++.++|+|+||+|||||++..+++.++..+...+|+||||.||++|++++|++|+|||+++|.++++
T Consensus 258 ~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~ 337 (477)
T 1r6t_A 258 VTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHS 337 (477)
T ss_dssp CBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEE
T ss_pred ccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHHHHHHHHHHHhCCCCceeeec
Confidence 99999999888777899999999999999665555544443233445899999999999999999999999999999999
Q ss_pred cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHHHH
Q 022694 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIK 239 (293)
Q Consensus 160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~eei~ 239 (293)
|+||||+|+++|||||.+||+|+|+|+|++|++||++||||++..+.+++++.|+||++|+++.|+++|+.+++++++|+
T Consensus 338 pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~ 417 (477)
T 1r6t_A 338 TFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR 417 (477)
T ss_dssp CCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHH
T ss_pred ccccCCCCCccccCCCCCCCceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999767999999988999999999999999999999998888888889999999999999999877789999999
Q ss_pred HhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCCC
Q 022694 240 KEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 290 (293)
Q Consensus 240 ~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~~ 290 (293)
++|.+|+++++++|+.||+.|+++|+|||+||+++.++.|++++..+++.+
T Consensus 418 ~~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~~v~~~~~~~~~~~ 468 (477)
T 1r6t_A 418 KDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAA 468 (477)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC-
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 999999899999999999999999999999999999988999999998754
No 9
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=1.7e-67 Score=506.86 Aligned_cols=284 Identities=53% Similarity=0.912 Sum_probs=253.5
Q ss_pred cchHHHHhhcCCcEEEEeecccchhhcc-cChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhhee
Q 022694 2 FTNRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV 80 (293)
Q Consensus 2 ~~~k~lQ~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~ 80 (293)
++ +|||+.+||.++|+|||+||+++++ .+++.+++++++++++|+|||+||+|++||.||+|++.+++..+.+++||+
T Consensus 126 ~l-~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k~~i~~nSd~~~~~~~~~~~~v~rm~ 204 (432)
T 2ip1_A 126 FT-KWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQI 204 (432)
T ss_dssp HH-HHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHCSHHHHHHHHHHHTSC
T ss_pred HH-HHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCchhhhhhHHHHHHHHHhhh
Confidence 35 8999967999999999999999865 899999999999999999999999999999999998778888899999999
Q ss_pred eecceeeeccccCCccccccccCCcccCCCCCCCCCcccC---CCCccceeccccccCCcccccccccCCccCCCCcccc
Q 022694 81 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS---GKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALI 157 (293)
Q Consensus 81 t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~---~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l 157 (293)
+++++++++|+.++.++|+|+||+|||||++..+++.++. +++ |+||||.||++|++++|++|+|||+++|.++
T Consensus 205 ~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~---~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l 281 (432)
T 2ip1_A 205 TGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTP---CLIPCAIDQDPYFRVCRDVADKLKYSKPALL 281 (432)
T ss_dssp CHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCC---EEEEEEGGGHHHHHHHHHHHHHHTSCCCEEE
T ss_pred cHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCc---eEEEeccCcHHHHHHHHHHHHHhCCCCceee
Confidence 9999999888777889999999999999777666654443 445 7999999999999999999999999999999
Q ss_pred cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeecChHHHHH
Q 022694 158 ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEH 237 (293)
Q Consensus 158 ~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ee 237 (293)
++|+||||+|+++|||||.+||+|+|+|+|++|++||++||||++..+.+++++.|+||++|+++.|+++|+.+++++++
T Consensus 282 ~~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eiee 361 (432)
T 2ip1_A 282 HSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKE 361 (432)
T ss_dssp EECCCCCTTC--------CGGGCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHH
T ss_pred ccccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHH
Confidence 99999999998789999999889999999999999999999999988888888899999999999999998767899999
Q ss_pred HHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccCCC
Q 022694 238 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP 289 (293)
Q Consensus 238 i~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~~~ 289 (293)
|+++|.+|+++|+++|+.||+.|+++|+|+|+||++++++.++++...+++.
T Consensus 362 l~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~ 413 (432)
T 2ip1_A 362 CYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLV 413 (432)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHH
Confidence 9999999989999999999999999999999999999997788887777653
No 10
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=3.5e-67 Score=491.03 Aligned_cols=262 Identities=18% Similarity=0.248 Sum_probs=232.8
Q ss_pred HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694 5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK 75 (293)
Q Consensus 5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~ 75 (293)
+| ||+. +.++|+||||||+|+ +.+++++++++++++++|+|||+||+|++||.||+|++| |.+. .+++
T Consensus 30 ~~~~lQ~~--~~~~~~iaD~ha~~~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~qS~v~~~~el~~~l~~~~~~~~ 106 (341)
T 3sz3_A 30 QWQQMQDD--YDCQYCVVDLHAITV-RQDPQALHEATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGE 106 (341)
T ss_dssp GHHHHHHH--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHhc--CeEEEEEecceeEcC-CCCHHHHHHHHHHHHHHHHHcCCChhhcEEEeccchhhhHHHHHHHHhhccHHH
Confidence 67 9994 678888999999998 589999999999999999999999999999999999976 2222 4799
Q ss_pred hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC----
Q 022694 76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY---- 151 (293)
Q Consensus 76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~---- 151 (293)
|+|+++++++..+++ ++.++|+|+||+|||| |||.+++| +||||.||+||+++|||+|+|||+
T Consensus 107 l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQaa--------Dil~~~ad---~vpvG~DQ~~hlel~Rdia~rfn~~yg~ 173 (341)
T 3sz3_A 107 LSRMTQFKDKSARYA--NDVNAGLFGYPVLMAA--------DILLYGAH---QVPVGSDQKQHLELARDIATRFNNIYSP 173 (341)
T ss_dssp HHTCHHHHHHHHHHG--GGCCHHHHHHHHHHHH--------HHHTTTCS---EECCCGGGHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhhcc--CCCChhhHHhHHHHHH--------HHHHcCCC---EEEeccchHHHHHHHHHHHHHhchhccC
Confidence 999999999887653 5789999999999999 89999995 799999999999999999999983
Q ss_pred -----CCccccc---ccccccccCCccccccCCC--CceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeec
Q 022694 152 -----HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIP 221 (293)
Q Consensus 152 -----~~p~~l~---~~~lpgL~g~~~KMSkS~~--~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~ 221 (293)
+.|..+. +++||||+++++|||||+| +|+|+|+|+|++|++|||+ |+||+..+.+++++.+++|+++++
T Consensus 174 ~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~-a~Td~~~~~~~~~~~~~~p~v~~l 252 (341)
T 3sz3_A 174 EQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINK-AQTDAETPPRIAYDVENKAGIANL 252 (341)
T ss_dssp SSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHHH
T ss_pred CCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhh-ccCCCCCCcccccCCCCCcchhHH
Confidence 2454433 5899999765689999998 6899999999999999999 999998754555677999999999
Q ss_pred ceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694 222 VKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 286 (293)
Q Consensus 222 ~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~ 286 (293)
+.|+++| +++++++++++|+ |+++|++||+.|++.|+++|+|||+||+++.++ +|++||+++
T Consensus 253 ~~~~~~~--~~~~~e~i~~~~~-g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~G 316 (341)
T 3sz3_A 253 MGLYSAA--TGKTFAEIEAQYA-GVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDG 316 (341)
T ss_dssp HHHHHHH--HCCCHHHHHHHTT-TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHc--CCccHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999998 5678999999999 668999999999999999999999999999876 999999876
No 11
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=4.5e-65 Score=482.53 Aligned_cols=271 Identities=26% Similarity=0.369 Sum_probs=240.6
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc-cChHHHHHHHHhcccchhhcccCCCceeEeecccccchhhhhhHHhhhheeeec
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYN 83 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~~~~~~~~~l~r~~t~~ 83 (293)
+|+|+. |+.++|+||||||+|++. .+++.++.++++++++|+||||||+|++||.||++. ..++..+..+++.++++
T Consensus 95 ~~lq~~-~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~-~~~~~l~~~~~~~~~~~ 172 (372)
T 3a04_A 95 IYLQKN-GFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRG-TPYFRLIQLFSGKVTAA 172 (372)
T ss_dssp HHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSC-HHHHHHHHHHTTSSCHH
T ss_pred HHHHhC-CCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccch-HHHHHHHHHHHhhhhHH
Confidence 679985 999999999999999865 466779999999999999999999999999999864 45667788899999999
Q ss_pred ceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC----CCCcccccc
Q 022694 84 KVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----YHKPALIES 159 (293)
Q Consensus 84 ~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n----~~~p~~l~~ 159 (293)
++++.++ ..+.|.++||+|||||++...++.+++|++ |+||||+||+||+|+|||+|+||| .++|..+++
T Consensus 173 ~~~~~~~---~~~~~~~~yP~lqAaDil~~~~d~~~gy~a---~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~ 246 (372)
T 3a04_A 173 EMEAIYG---ELTPAKMMASLTQAADILHVQLDEYGGYRH---VVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYH 246 (372)
T ss_dssp HHHHHHS---SCCHHHHHHHHHHHHHHHGGGSGGGTCCCC---EEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEE
T ss_pred HHhhhhh---ccCcccccCCcchhHHHhhhcCccccCccc---eecccchhhHHHHHHHHHHHHHhcCcccccChhhhhh
Confidence 9887754 467899999999999666555555555666 799999999999999999999998 478999999
Q ss_pred cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee-eecChHHHHHH
Q 022694 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF-FLEDDAELEHI 238 (293)
Q Consensus 160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~-~~~~~~~~eei 238 (293)
+++|||+| .|||||++||+|+|+|+|++|++|||+ |+||++.+.+++++.||+|++|++|.++.+ +..++++++++
T Consensus 247 ~~~pgldG--~KmS~S~~ns~I~l~D~p~~i~kKI~k-a~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~~e~~ei 323 (372)
T 3a04_A 247 KLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHI 323 (372)
T ss_dssp CCCBCTTS--SBCCTTSGGGSCBTTCCHHHHHHHHHT-CCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSHHHHHHH
T ss_pred cccCCCCC--CccCCCCCCcccccCCCHHHHHHHHhc-CccCCCCCcccccccCCCCchhhHHHHHHHccCCCHHHHHHH
Confidence 99999998 699999999999999999999999999 999999999999999999999999986433 34578899999
Q ss_pred HHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcccC
Q 022694 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRP 287 (293)
Q Consensus 239 ~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~~~~ 287 (293)
+++|++|+++||+||+.|++.|+++|+|+|+||++..+ +++++++...
T Consensus 324 ~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer~e~~~~-~~~kile~~r 371 (372)
T 3a04_A 324 YTSCRLGKILCGECKQIAWEKLERFLAEHQSRLEKAKT-IAWKLVEPPR 371 (372)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTSCCCCC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhcccC
Confidence 99999999999999999999999999999999998766 8999988653
No 12
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=3.9e-66 Score=484.14 Aligned_cols=262 Identities=17% Similarity=0.256 Sum_probs=230.6
Q ss_pred hHH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHH
Q 022694 4 NRY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMV 74 (293)
Q Consensus 4 ~k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~ 74 (293)
.+| ||+ ++.++|+||||||+|+ ..+++++++++++++++|+|||+||+|++||.||+|++| |.+. .++
T Consensus 38 ~~~~~lQ~--~~~~~~~iaD~hA~t~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~v~~~~el~~~l~~~~~~~ 114 (346)
T 3n9i_A 38 RQWVQMQD--DYDCIYCIVDLHAITA-RQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFG 114 (346)
T ss_dssp HHHHTTTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGCTHHHHHHHHHHTTSBHH
T ss_pred HHHHHHHh--hCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccccccchHHHHHHHHHhhHH
Confidence 378 898 5778899999999997 589999999999999999999999999999999999976 2222 478
Q ss_pred hhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC---
Q 022694 75 KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--- 151 (293)
Q Consensus 75 ~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~--- 151 (293)
+|+|+++++++..+. .++.++|+|+||+|||| |||.+++| +||||.||+||+++|||+|+|||+
T Consensus 115 ~l~R~~~~k~~~~~~--~~~~~~g~~~YP~lQAa--------Dil~~~ad---~vpvG~DQ~~hleltRdia~rfn~~yg 181 (346)
T 3n9i_A 115 ELSRMTQFKDKSARY--AENINAGLFDYPVLMAA--------DILLYQTN---QVPVGEDQKQHLELSRDIASRFNNLYG 181 (346)
T ss_dssp HHHTCHHHHHHHHHS--GGGCBHHHHHHHHHHHH--------HHHTTTCS---EECCCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcc--CCCCCchhHHhHHHHHH--------HHHHhCce---EEEeccchHHHHHHHHHHHHHhccccC
Confidence 999999999887654 25689999999999999 89999995 899999999999999999999993
Q ss_pred ---CCccccc---ccccccccCCccccccCCCC--ceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecce
Q 022694 152 ---HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVK 223 (293)
Q Consensus 152 ---~~p~~l~---~~~lpgL~g~~~KMSkS~~~--s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~ 223 (293)
+.|..+. +++||||+++++|||||++| |+|+|+|+|++|++||++ |+||+..+.+++++.+++|++++++.
T Consensus 182 ~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~k-A~Td~~~~~~~~~~~~~~p~v~~l~~ 260 (346)
T 3n9i_A 182 DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKR-AMTDSDEPALIRYDVEKKAGVSNLLD 260 (346)
T ss_dssp SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHHHHH
T ss_pred CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHh-CcCCCCCCccccCCCCCCCChhHHHH
Confidence 4565544 38999996556899999986 899999999999999999 99999864334466789999999999
Q ss_pred eeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694 224 YLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 286 (293)
Q Consensus 224 ~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~ 286 (293)
|+..| +++++++++++|.+| ++++||+.|+++|+++|+|||+||+++.+| +|++||+++
T Consensus 261 ~~~~~--~~~~~eel~~~y~~~--~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~~G 321 (346)
T 3n9i_A 261 ILSGV--TGQSIPELEAQFTGQ--MYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREG 321 (346)
T ss_dssp HHHHH--HCCCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhc--CCccHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99888 567899999999865 699999999999999999999999999876 999999876
No 13
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=2.2e-65 Score=484.90 Aligned_cols=258 Identities=20% Similarity=0.232 Sum_probs=220.5
Q ss_pred HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHhhh
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVA 77 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~ 77 (293)
+|||+ |+.++|+||||||+|+ +.+++++++++++++++|+|||+||+|++||.||+|++| |.+. .+++|+
T Consensus 61 ~~LQ~--~~~~~~~IaD~hAlt~-~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~~~el~w~l~~~~~~~~L~ 137 (388)
T 3prh_A 61 VELQH--DYNSYFCIVDQHAITV-PQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELE 137 (388)
T ss_dssp HHTTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHc--cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecccccchHHHHHHHHhhccHHHHH
Confidence 34898 7788899999999998 689999999999999999999999999999999999986 2232 489999
Q ss_pred heeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC------
Q 022694 78 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY------ 151 (293)
Q Consensus 78 r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~------ 151 (293)
|+++|+++.+.. ++.++|+|+||+|||| |||.|++| +||||.||+||+|+|||+|+|||+
T Consensus 138 R~~~fk~k~~~~---~~~~~g~~~YPvLQAA--------DIl~~~ad---~vPvG~DQ~~hleltRdia~rfn~~y~~~f 203 (388)
T 3prh_A 138 RMTQFKDKSKGN---EAVVSGLLTYPPLMAA--------DILLYGTD---LVPPGEDQKQHLELTRNLAERFNKKYNDIF 203 (388)
T ss_dssp TTC-------------CCBHHHHSCHHHHHH--------HHHTTTCC---EECCCSSCHHHHHHHHHHHHHHHHHTCSCC
T ss_pred hhhhHhHHhhcc---CCCcchhHhhHHHHHH--------HHHHhCCC---EEEechhHHHHHHHHHHHHHHhCcccCCCc
Confidence 999999887642 6789999999999999 89999995 799999999999999999999995
Q ss_pred CCccccc---ccccccccCCccccccCCC--CceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeee
Q 022694 152 HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS 226 (293)
Q Consensus 152 ~~p~~l~---~~~lpgL~g~~~KMSkS~~--~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~ 226 (293)
+.|..+. +++||||+|+++|||||+| +|+|+|+|+|++|++|||+ |+||+....+ ++++++|++++++.|++
T Consensus 204 ~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~k-a~TD~~~~~~--~~~~~~p~v~~l~~i~~ 280 (388)
T 3prh_A 204 TIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVK--FDKENKPGVSNLLTIYS 280 (388)
T ss_dssp CCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHT-CCCCSSCCCC--CCTTTCHHHHHHHHHHH
T ss_pred ccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhh-ccCCCCCccc--CCCCCCCCcchHHHHHH
Confidence 2243332 4789999887789999997 6899999999999999999 9999865432 34689999999999999
Q ss_pred eeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHhhhccc
Q 022694 227 FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR 286 (293)
Q Consensus 227 ~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~-~l~~il~~~ 286 (293)
++ +++++++|+++|. |. +|++||+.|+++|+++|+|||+||+++.++ +|++||+++
T Consensus 281 ~~--~~~~~eel~~~y~-g~-~~g~lK~~lae~l~~~l~pirer~~~~~~~~~l~~il~~G 337 (388)
T 3prh_A 281 IL--GNTTIEELEAKYE-GK-GYGEFKGDLAEVVVNALKPIQDRYYELIESEELDRILDEG 337 (388)
T ss_dssp HH--HTCCHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred hc--CCCcHHHHHHHHc-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 88 5678999999999 76 999999999999999999999999999876 999999875
No 14
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=5.4e-64 Score=467.05 Aligned_cols=255 Identities=17% Similarity=0.207 Sum_probs=228.0
Q ss_pred HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHhhh
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVA 77 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~ 77 (293)
+|||+ |+.++|+||||||+|++ .+++++++++++++++|+|||+||+|++||.||+|++| |.+. .+.+|.
T Consensus 29 ~~lQ~--g~~~~~~iaD~ha~~~~-~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~~~el~~~l~~~~~~~~l~ 105 (322)
T 3tzl_A 29 VDAQE--KSQMFMFIANYHAMTSS-QDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE 105 (322)
T ss_dssp HHTTT--TSCCEEEECHHHHTTTC-CCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHGGGCBHHHHH
T ss_pred HHHhc--CCCEEEEEecCeeecCC-CCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcchhHHHHHHHHhccCcHHHHH
Confidence 45999 88899999999999985 79999999999999999999999999999999999976 2222 478888
Q ss_pred heeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC------
Q 022694 78 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY------ 151 (293)
Q Consensus 78 r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~------ 151 (293)
|++++|+.... .++.++|+|+||+|||| |||.|+++ +||||.||+||+++|||+|+|||+
T Consensus 106 r~~~~K~~~~~---~~~~~~g~f~YP~LQAa--------Dil~~~~~---~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f 171 (322)
T 3tzl_A 106 RAHSYKDKVAK---GLSASHGLFSYPVLMAA--------DILLFDTR---IVPVGKDQIQHVEIARDIALKVNNEWGEIF 171 (322)
T ss_dssp SCHHHHHHHHT---TCCCBHHHHHHHHHHHH--------HHHHTTCS---EEECCGGGHHHHHHHHHHHHHHHHHHCSCS
T ss_pred hhhHHHHHHcc---CCCCchHHHHHHHHHHH--------HHHHhCCc---EEEeccchHHHHHHHHHHHHHhcccccCCC
Confidence 99888775433 35789999999999999 89999995 899999999999999999999986
Q ss_pred CCccccc---ccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeee
Q 022694 152 HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF 228 (293)
Q Consensus 152 ~~p~~l~---~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 228 (293)
++|..++ +|+||||+| +|||||++| +|+|+|+|++|++||++ |+|||..+. ..+||++++++.|+++|
T Consensus 172 ~~P~~~~~~~~~~l~~l~G--~KMSKS~~n-~I~L~d~p~~i~~KI~~-a~td~~~~~-----~~~~~~~~~v~~~~~~~ 242 (322)
T 3tzl_A 172 TLPEARVNEEVAVVVGTDG--AKMSKSYQN-TIDIFSSEKTLKKQISS-IVTDSTALE-----DPKDHENCNIFKIAKLF 242 (322)
T ss_dssp CCCEEECCCSSCCCBCTTS--SBCCGGGTC-CCBSSCCHHHHHHHHHT-CCCCCCCTT-----SCCCGGGCHHHHHHGGG
T ss_pred CCchhhhccccccccCCCC--CcCCCCCCC-ceecCCCHHHHHHHHHh-ccCCCcccc-----CCCCCcchhHHHHHHHh
Confidence 5665443 799999999 799999997 89999999999999999 999998652 35789999999999999
Q ss_pred ecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694 229 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 286 (293)
Q Consensus 229 ~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~ 286 (293)
+ +++++++++++|++|+++|+++|+.||+.|+++|+|||+||+++.+| +|++||+++
T Consensus 243 ~-~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~G 301 (322)
T 3tzl_A 243 L-DESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDFG 301 (322)
T ss_dssp C-CHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred C-ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 6 57899999999999889999999999999999999999999999986 999999876
No 15
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=1.8e-63 Score=467.96 Aligned_cols=260 Identities=18% Similarity=0.233 Sum_probs=228.4
Q ss_pred HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694 5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK 75 (293)
Q Consensus 5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~ 75 (293)
+| ||+ |+.++|+||||||+|++ .+++++++++++++++|+||||||+|++||.||+|++| |.+. .+.+
T Consensus 28 ~~~~lQ~--~~~~~~~IaD~ha~~~~-~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~qS~~~~~~el~w~l~~~~~~~~ 104 (348)
T 2yy5_A 28 SLIELQE--QCQLFVFVADLHSITVD-FQPQALKQNNFDLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGE 104 (348)
T ss_dssp GHHHHHH--HSEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGCHHHHHHHHHHHHHSBHHH
T ss_pred HHHHHHh--CCcEEEEEcChhhccCC-CCHHHHHHHHHHHHHHHHHhCCChhHeEEEECCcccchhHHHHHHHhhccHHH
Confidence 67 998 67889999999999985 89999999999999999999999999999999999876 2222 4899
Q ss_pred hhheeeecceeeeccc----cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC-
Q 022694 76 VAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG- 150 (293)
Q Consensus 76 l~r~~t~~~~~~~~g~----~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n- 150 (293)
|+|++++++..++.++ .++.++|+|+||+|||| |||.|++| +||||.||+||++++|++|+|||
T Consensus 105 l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaa--------Dil~~~a~---~vpvG~DQ~~~lel~Rdia~r~n~ 173 (348)
T 2yy5_A 105 LQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAG--------DILLYQPD---IVPVGNDQKQHLELTRDLAQRIQK 173 (348)
T ss_dssp HHHCHHHHTTC-----------CCBTHHHHHHHHHHH--------HHHTTCCS---EEECCGGGHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHH--------HHHHhCcc---EEEecccHHHHHHHHHHHHHHhhh
Confidence 9999999988765432 45789999999999999 89999995 79999999999999999999998
Q ss_pred -----CCCccccc---ccccccccCCccccccCCCCc--eeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeee
Q 022694 151 -----YHKPALIE---SSFFPALQGETGKMSASDPNS--AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI 220 (293)
Q Consensus 151 -----~~~p~~l~---~~~lpgL~g~~~KMSkS~~~s--~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~ 220 (293)
+++|..++ +++||||+||++|||||++|+ +|+|+|+|++|++|||+ |+||+..+.+ ++++++|++++
T Consensus 174 ~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~-a~td~~~~~~--~~~~~~p~v~~ 250 (348)
T 2yy5_A 174 KFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIR--FASKTQPGVTN 250 (348)
T ss_dssp HHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHT-CCCCSSCCCS--CCTTTCHHHHH
T ss_pred hcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHh-CCCCCccccc--cCCCCCCchhh
Confidence 56787776 599999999888999999985 99999999999999999 9999965432 34577899999
Q ss_pred cceeeeeeecChHHHH---------HHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHhhhccc
Q 022694 221 PVKYLSFFLEDDAELE---------HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR 286 (293)
Q Consensus 221 ~~~~l~~~~~~~~~~e---------ei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~-~l~~il~~~ 286 (293)
++.|+++| ++++++ +|+++|. | ++|+++|+.||+.|+++|+|||+||+++ +| .|+++|.++
T Consensus 251 ~~~~~~~~--~~~~~~~~~~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~-~d~~~~~~l~~G 321 (348)
T 2yy5_A 251 MLTILKAL--LKEPVNQSLTNQLGNDLEAYFS-T-KSYLDLKNALTEATVNLLVNIQRKREQI-SREQVFNCLQAG 321 (348)
T ss_dssp HHHHHHHH--TTSGGGHHHHHHHCSCHHHHGG-G-CCHHHHHHHHHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHH
T ss_pred HHHHHHhC--ChHhhhhhcccchHHHHHHHHc-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHH
Confidence 99999998 667899 9999999 7 8999999999999999999999999999 54 699999875
No 16
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=4.7e-63 Score=463.87 Aligned_cols=262 Identities=20% Similarity=0.246 Sum_probs=229.0
Q ss_pred HHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHhhhh
Q 022694 6 YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVKVAK 78 (293)
Q Consensus 6 ~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~l~r 78 (293)
|||++ |+.++++||||||+|+++.+++.+++++++++++|+|||+||+|++||.||+|+++ |.+. ++.+|.|
T Consensus 39 ~lQ~~-G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~if~qS~~~~~~el~~~l~~~~~v~~l~r 117 (340)
T 2g36_A 39 KLQEE-GNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLER 117 (340)
T ss_dssp HHHHT-TCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTHHHHHHHHHHTTSCHHHHHT
T ss_pred HHHHC-CCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEECCchHHHHHHHHHHHccCCHHHHHH
Confidence 39995 99999999999999985688999999999999999999999999999999999876 2222 4889999
Q ss_pred eeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC------C
Q 022694 79 CVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY------H 152 (293)
Q Consensus 79 ~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~------~ 152 (293)
++++++...+.+..++.++|+|+||+|||| |||.|+++ +||||.||+||+++|||+|+|||+ +
T Consensus 118 ~~~~k~~~~r~~~~~~~~~g~f~YPvLQAa--------Dil~~~~~---~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~ 186 (340)
T 2g36_A 118 VPTYKEIKSELNYKDLSTAGFLIYPVLQAA--------DILIYKAE---GVPVGEDQVYHIELTREIARRFNYLYDEVFP 186 (340)
T ss_dssp CHHHHTC-------CCCSHHHHTHHHHHHH--------HHHTTTCS---EEEECGGGHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred hHHHHhHHHHhccCCCCChHHhhhHHHHHh--------hHHHhCCC---EEEcccchHHHHHHHHHHHHHhhhhcccccC
Confidence 999988333333345689999999999999 89999995 899999999999999999999973 5
Q ss_pred Ccccc--cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeec
Q 022694 153 KPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE 230 (293)
Q Consensus 153 ~p~~l--~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 230 (293)
+|..+ ++|+||||+| .|||||++| +|+|+|||++|++||++ |+||+.. +++..|++|++|+++.|+++|+.
T Consensus 187 ~P~~~~~~~~~l~gldG--~KMSKS~~n-~I~L~dsp~~i~~Ki~~-a~td~~~---~~~~~~~~p~~~~v~~~~~~f~~ 259 (340)
T 2g36_A 187 EPEAILSRVPKLPGTDG--RKMSKSYGN-IINLEISEKELEQTILR-MMTDPAR---VRRSDPGNPENCPVWKYHQAFDI 259 (340)
T ss_dssp CCEEEECCSCCCCCTTS--SCCCGGGTC-CCBTTCCHHHHHHHHHT-CCCCTTC---SSTTSCCCGGGCHHHHHHHHTTC
T ss_pred CchhhhccccccCCCCc--cccCCCCCC-eEeeeCCHHHHHHHHHh-CCCCccc---ccccCCCCCchhHHHHHHHHHCC
Confidence 67643 4799999998 499999986 89999999999999999 9999865 23556799999999999999975
Q ss_pred ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694 231 DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 286 (293)
Q Consensus 231 ~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~ 286 (293)
+.+++++|+++|.+|++++++||+.||+.|+++|+|||+||+++.++ +|+++|.++
T Consensus 260 ~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~~il~~g 317 (340)
T 2g36_A 260 SEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPHYVDDVIMEG 317 (340)
T ss_dssp CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred CHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 56778999999999989999999999999999999999999999987 999999865
No 17
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=3.3e-63 Score=463.04 Aligned_cols=258 Identities=21% Similarity=0.278 Sum_probs=229.9
Q ss_pred HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694 5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK 75 (293)
Q Consensus 5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~ 75 (293)
+| ||+ |+.++|+||||||+|+ +.+++++++++++++++|+|||+||+|++||.||+|++| |.+. .+++
T Consensus 25 ~~~~lQ~--g~~~~~~IaD~ha~~~-~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS~~~~~~~l~w~l~~~~~~~~ 101 (328)
T 1i6k_A 25 QFVELQH--EYNCYFCIVDQHAITV-WQDPHELRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGE 101 (328)
T ss_dssp HHHHHTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGGCTHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHc--CCcEEEEEeCceeecC-CCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecCchhhhhHHHHHHhccccHHH
Confidence 66 588 7888999999999998 699999999999999999999999999999999999875 3333 4789
Q ss_pred hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC-----
Q 022694 76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----- 150 (293)
Q Consensus 76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n----- 150 (293)
|+|++++++..++ + ++.++|+|+||+|||| |||.|+++ +||||.||+||++++||+|+|||
T Consensus 102 l~r~~~~k~~~~~-~--~~~~~g~f~YPvLQaa--------Dil~~~~~---~vpvG~DQ~~~iel~Rdia~r~n~~yg~ 167 (328)
T 1i6k_A 102 LERMTQFKEKSAG-K--EAVSAGLLTYPPLMAA--------DILLYNTD---IVPVGEDQKQHIELTRDLAERFNKRYGE 167 (328)
T ss_dssp HHTCHHHHHHHTT-C--SSCCHHHHTHHHHHHH--------HHHTTTCS---EEECCGGGHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhc-c--CCCCchhhccHHHHHH--------HHHHhCCC---EEecccchHHHHHHHHHHHHHhCccccc
Confidence 9999999987654 2 5789999999999999 89999995 79999999999999999999999
Q ss_pred -CCCccccc---ccccccccCCccccccCCCCce--eeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeeccee
Q 022694 151 -YHKPALIE---SSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 224 (293)
Q Consensus 151 -~~~p~~l~---~~~lpgL~g~~~KMSkS~~~s~--I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~ 224 (293)
+++|..+. +++||||+|+++|||||++|++ |+|+|+|++|++|||+ |+|||..+.. ++++++|++++++.|
T Consensus 168 ~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~-a~td~~~~~~--~~~~~~p~v~~~~~~ 244 (328)
T 1i6k_A 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIR--YDKEAKPGISNLLNI 244 (328)
T ss_dssp CCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CCCCSSCCCC--CBTTTBHHHHHHHHH
T ss_pred ccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHh-cCCCCccccc--cCCCCCcchhhHHHH
Confidence 45776654 6999999998889999999866 9999999999999999 9999865332 344678999999999
Q ss_pred eeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHhhhccc
Q 022694 225 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MVDAFMAVR 286 (293)
Q Consensus 225 l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~-~l~~il~~~ 286 (293)
+++| +++++++|+++|. | ++|+++|+.||+.|+++|+|||+||+++.++ .|+++|.++
T Consensus 245 ~~~~--~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~il~~g 303 (328)
T 1i6k_A 245 YSTL--SGQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEG 303 (328)
T ss_dssp HHHH--HCCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHH
T ss_pred HHHC--CchhHHHHHHHHc-C-CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChhHHHHHHHH
Confidence 9998 5678999999999 7 8999999999999999999999999999886 699998865
No 18
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-61 Score=453.81 Aligned_cols=260 Identities=20% Similarity=0.223 Sum_probs=222.5
Q ss_pred HH--HHhhcC-CcEEEEeecccchhhcc-cChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hH
Q 022694 5 RY--LQDAFK-VPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NM 73 (293)
Q Consensus 5 k~--lQ~~~g-~~~~I~iaD~ha~~~~~-~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~ 73 (293)
+| ||++ | +.++|+||||||+++++ .+++.+++++++++++|+|||+||+|++||.||+|+++ |.+. ++
T Consensus 25 ~~~~lQ~~-G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~~~~el~~~l~~~~~~ 103 (337)
T 2el7_A 25 QWVAIGEK-LGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPL 103 (337)
T ss_dssp HHHHHHHH-HGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGSTHHHHHHHHHHHTSBH
T ss_pred HHHHHHhc-CCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEEEEcCcchhhHHHHHHHHccCCH
Confidence 56 7995 8 89999999999999853 79999999999999999999999999999999999976 2232 46
Q ss_pred HhhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC---
Q 022694 74 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--- 150 (293)
Q Consensus 74 ~~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n--- 150 (293)
.+|.|++++++..+. .++.++|+|+||+|||| ||+.|+++ +||||.||+||++++||+|+|||
T Consensus 104 ~~l~r~~~~k~r~~~---~~~~~~g~f~YPvLQaa--------Dil~~~~~---lvp~G~DQ~~~i~l~rdla~r~n~~~ 169 (337)
T 2el7_A 104 GDLTRMTQFKDKASK---QETVWSGLLMYPVLQAA--------DILIYKAD---TVPVGEDQVQHIELTREIARRFNHLF 169 (337)
T ss_dssp HHHHTSHHHHHHTTS---SSCCBHHHHHHHHHHHH--------HHHHTTCC---EEECCGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhcc---CCCCChHHHHhHHHHHh--------hHHhhCCc---EEEcccchHHHHHHHHHHHHHHHhhc
Confidence 899999999886542 46789999999999999 89999995 89999999999999999999986
Q ss_pred ---CCCcccccc---cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeeccee
Q 022694 151 ---YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 224 (293)
Q Consensus 151 ---~~~p~~l~~---~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~ 224 (293)
+++|..+++ |+||||+| ++|||||++| +|+|+|+|++|++||++ |+||+..+.+ ..+++|++++++.|
T Consensus 170 g~~f~~P~~~~~~~~p~l~gldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~~~~~---~~~~~p~~~~v~~~ 243 (337)
T 2el7_A 170 GETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLLEPEESIWQKIQH-LPDDPQRIRL---SDPGDPERTILFTY 243 (337)
T ss_dssp SSCCCCCEEECCTTSCCCBCTTS-SSBCCTTTTC-CCBSSSCHHHHHHHHHT-CCCCC----------------CHHHHH
T ss_pred CcccCCCeeecccccccccCCCC-ccccCCCCCC-eeeCcCCHHHHHHHHHh-CCCCCccccc---cCCCCCchhhHHHH
Confidence 477877664 89999999 6899999998 99999999999999999 9999976543 35678999999999
Q ss_pred eeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694 225 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 286 (293)
Q Consensus 225 l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~ 286 (293)
+++|+. .+++++|+++|.+|+++++++|+.||+.|+++|+|+|++|+++.+| +|+++|.++
T Consensus 244 ~~~~t~-~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~il~~G 306 (337)
T 2el7_A 244 LSYFAP-KDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDALLEG 306 (337)
T ss_dssp HHHHSC-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHcCC-hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHHHHHH
Confidence 999943 3599999999999889999999999999999999999999999987 999999765
No 19
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=3.3e-62 Score=459.95 Aligned_cols=263 Identities=24% Similarity=0.284 Sum_probs=235.6
Q ss_pred HH--HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch----hhhh---hHHh
Q 022694 5 RY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG----AFYK---NMVK 75 (293)
Q Consensus 5 k~--lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~~~~---~~~~ 75 (293)
+| ||++ +.++|+||||||+++++.+++++++++++++++|+|||+||+|++||.||+|++| |.+. .+.+
T Consensus 46 ~~~~lQ~~--~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~~~~el~~~l~~~~~v~~ 123 (351)
T 1yi8_B 46 NRVRLQDE--AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSH 123 (351)
T ss_dssp HHHHHTSS--SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEEEGGGCTHHHHHHHHHHTTSBHHH
T ss_pred HHHHHHHh--CCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEEcCchhhHHHHHHHHhccCCHHH
Confidence 78 9995 6678888999999986699999999999999999999999999999999999976 2222 4899
Q ss_pred hhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccC-----
Q 022694 76 VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----- 150 (293)
Q Consensus 76 l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n----- 150 (293)
|.|++|+++..++.|+.++.++|+|+||+|||| ||+.|+++ +||||.||+||++++||+|+|||
T Consensus 124 l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAa--------Dil~~~~~---~vpvG~DQ~~hi~l~rdia~r~n~~yg~ 192 (351)
T 1yi8_B 124 LRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAA--------DIAAFGAT---LVPVGDDQLPMLEQTREIVRRFNALYAP 192 (351)
T ss_dssp HHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHH--------HHHHHTCS---EEEECGGGHHHHHHHHHHHHHHHHHTCS
T ss_pred HHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHh--------hHHhcCCC---EEEecCCcHHHHHHHHHHHHHHHhhccc
Confidence 999999999887666667789999999999999 89999995 89999999999999999999987
Q ss_pred -CCCcccc--cccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee
Q 022694 151 -YHKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 227 (293)
Q Consensus 151 -~~~p~~l--~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~ 227 (293)
+++|..+ ++|+||||+| ++|||||++| +|+|+|+|++|++||++ |+||+.. +++..|+||+.++++.|+.+
T Consensus 193 ~f~~P~~~~~~~~~l~~ldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~~~---~~~~~~~~~~~~~~~~~l~~ 266 (351)
T 1yi8_B 193 VLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGDSADEVARKVMG-MYTDPGH---LRASDPGRVEGNPVFTFLDA 266 (351)
T ss_dssp CSCCCEEEECSSCSCCCTTS-SSCCCTTTTC-CCBTTCCHHHHHHHHHT-CCCCTTC---CSTTSCCCCTTCTTHHHHHH
T ss_pred ccCCCeeeeecCccccCCCC-ccccCCCCCC-eecCCCCHHHHHHHHHh-cCCCccc---ccccCCCCCccchHHHHHHH
Confidence 3677654 3799999998 4699999998 99999999999999999 9999863 23567889999999999999
Q ss_pred eecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694 228 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 286 (293)
Q Consensus 228 ~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~ 286 (293)
|+.+.+++++|+++|.+|+++|+++|+.||+.|+++|+|+|+||+++.++ +|+++|.++
T Consensus 267 ~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~l~~il~~G 327 (351)
T 1yi8_B 267 FDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEG 327 (351)
T ss_dssp HCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHH
Confidence 87667788999999999999999999999999999999999999999886 899999865
No 20
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=2.7e-60 Score=449.69 Aligned_cols=257 Identities=17% Similarity=0.263 Sum_probs=222.8
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeeccccc-ch--hhhhhHHhhhhe
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAKC 79 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~-~~--~~~~~~~~l~r~ 79 (293)
+|||++ ||.++|+||||||+++++ .++++++++++++++.|+|||+||+|++||.||+|+ +| .+|..+.+++++
T Consensus 82 ~~lQ~~-G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~ 160 (373)
T 3vgj_A 82 NKLTSN-GCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRS 160 (373)
T ss_dssp HHHHTT-TCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTT
T ss_pred HHHHHC-CCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHcc
Confidence 569995 999999999999999864 799999999999999999999999999999999998 54 577777788888
Q ss_pred eeecceeeec---ccc--CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCC-C
Q 022694 80 VTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-K 153 (293)
Q Consensus 80 ~t~~~~~~~~---g~~--~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~-~ 153 (293)
+|++++.++. ++. ++.++|+|+||+|||| ||+.+++| +||||.||++|+++|||+|+|||+. +
T Consensus 161 ~tv~rm~~~~~~~~r~~~~~~~~g~f~YPlLQaa--------Dil~l~ad---~vpgG~DQ~~~l~l~Rdla~r~~~~~~ 229 (373)
T 3vgj_A 161 FNINRMKRCLKIMGRSEGEENYCSQILYPCMQCA--------DIFFLNVD---ICQLGIDQRKVNMLAREYCDIKKIKKK 229 (373)
T ss_dssp SBHHHHHTTGGGGTCCTTSCCBTHHHHHHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHHTCSCC
T ss_pred CcHHHHHhhhHHHhhhccCCCChHHHHHHHHHHh--------cccccCCc---EEEcchhhHHHHHHHHHHHHHhCCCCC
Confidence 8888887653 222 4689999999999999 89999996 7999999999999999999999986 6
Q ss_pred cccccccccccc-cCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeee----ecceeeeee
Q 022694 154 PALIESSFFPAL-QGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD----IPVKYLSFF 228 (293)
Q Consensus 154 p~~l~~~~lpgL-~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~----~~~~~l~~~ 228 (293)
|.++++|+|||| +| ++|||||+|+|+|+|+|+|++|++|||+ |||||+. .++||.++ ++|+++..|
T Consensus 230 ~~~l~~p~l~gL~dG-~~KMSKS~~~~~I~L~D~p~~i~~KI~k-A~td~~~-------~~~n~~~~~~~~~~f~~~~~f 300 (373)
T 3vgj_A 230 PVILSHGMLPGLLEG-QEKMSKSDENSAIFMDDSESDVNRKIKK-AYCPPNV-------IENNPIYAYAKSIIFPSYNEF 300 (373)
T ss_dssp CEEEEBCCCCCSSTT-CCSCCSSSTTCCCBTTCCHHHHHHHHHH-SCCCTTC-------CTTCHHHHHHHHTHHHHHSSE
T ss_pred ceEEeCCeeecCCCC-CCCCcCCCCCCeeecCCCHHHHHHHHHh-CcCCCCC-------CCCCcchhhhhhhhhhhhhhh
Confidence 888899999999 65 4799999988899999999999999999 9999864 25788775 356666555
Q ss_pred ec----------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhh
Q 022694 229 LE----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAF 282 (293)
Q Consensus 229 ~~----------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~i 282 (293)
.. +++++++|+++|.+|++||++||++||++|+++|+|||++|++..+. +|+++
T Consensus 301 ~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~lae~i~~~l~Pire~~~~~~~~~~~l~~v 366 (373)
T 3vgj_A 301 NLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEI 366 (373)
T ss_dssp EECCCGGGTCCEEECCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cccccccccCCcCcccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 21 24689999999999999999999999999999999999999987654 56554
No 21
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=1.5e-58 Score=437.19 Aligned_cols=246 Identities=22% Similarity=0.319 Sum_probs=213.7
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeecccccch-hhhhhHHhhhheee
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVT 81 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t 81 (293)
+|||++ |+.++|+||||||+++++ .+++++++++++++++|+|||+||+|++||.||+|+++ .+|..+.++++.+|
T Consensus 60 ~~lQ~~-G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t 138 (364)
T 2cya_A 60 KDLVEA-GVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRAS 138 (364)
T ss_dssp HHHHHT-TCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHTSC
T ss_pred HHHHHC-CCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCcCc
Confidence 569995 999999999999999874 89999999999999999999999999999999999876 57777777888887
Q ss_pred ecceeeec---cc---cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcc
Q 022694 82 YNKVVGIF---GF---TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 155 (293)
Q Consensus 82 ~~~~~~~~---g~---~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~ 155 (293)
++++.++. ++ ..+.++|+|+||+|||| ||+.|++| +||||.||++|+++||++|+|||+++|.
T Consensus 139 ~~~l~r~~~~k~r~~~~~~i~~g~~~YP~LQaa--------Dil~~~~~---~v~~G~DQ~~~~~l~rdla~r~~~~~p~ 207 (364)
T 2cya_A 139 LARVRRALTIMGRRAEEAEVDASKLIYPLMQVS--------DIFYMDLD---IALGGMDQRKAHMLARDVAEKLGRKKPV 207 (364)
T ss_dssp HHHHHTTC------CCGGGSCTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHHTTTTCCCCE
T ss_pred HHHHHcCchhhhhhcCCCCccchhhhhHHHHHh--------hHHhcCCC---EEeccchHHHHHHHHHHHHHHcCCCCce
Confidence 77776542 22 22467999999999999 89999996 7999999999999999999999999999
Q ss_pred cccccccccccC---------------CccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeee
Q 022694 156 LIESSFFPALQG---------------ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI 220 (293)
Q Consensus 156 ~l~~~~lpgL~g---------------~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~ 220 (293)
++++|+||||+| |++|||||+++++|+|+|+|++|++||++ |+||++.+ +.+.
T Consensus 208 ~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d~p~~i~~Ki~~-a~td~~~~-----------~~~~ 275 (364)
T 2cya_A 208 AIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDSDDDIRRKIRK-AYCPAKQV-----------QGNP 275 (364)
T ss_dssp EEEECCCBCSSCC----------------CBCCSSSGGGSCBTTCCHHHHHHHHHT-SCCCTTCC-----------TTCH
T ss_pred eeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccCCHHHHHHHHHh-CcCCCCCC-----------CCCc
Confidence 999999999997 56899999888899999999999999999 99998643 2233
Q ss_pred cceeeeeeec-------------------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022694 221 PVKYLSFFLE-------------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 274 (293)
Q Consensus 221 ~~~~l~~~~~-------------------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~ 274 (293)
++.|+++|+. +.+++++|+++|.+|+++|+++|++||+.|+++|+|+|++|++.
T Consensus 276 v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~~ 348 (364)
T 2cya_A 276 VLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLGD 348 (364)
T ss_dssp HHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566665431 23589999999999999999999999999999999999999953
No 22
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-58 Score=439.02 Aligned_cols=254 Identities=21% Similarity=0.323 Sum_probs=218.1
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHH-Hhcc----cchhhcccCCCceeEeecccccch-hhhhhHHhh
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLA-RENA----KDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKV 76 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~-~~~~----~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l 76 (293)
+|||++ |+.++|+||||||+++++ .+++++++++ ++++ ++|+|||+||+|++||.||+|++| .+|..+..+
T Consensus 59 ~~lQ~~-G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~~ 137 (375)
T 2cyc_A 59 ADFQKA-GIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDI 137 (375)
T ss_dssp HHHHHT-TCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHH
T ss_pred HHHHHC-CCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHHHH
Confidence 569995 999999999999999874 6999999999 8888 899999999999999999999987 478888888
Q ss_pred hheeeecceeeec---cc--cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCC
Q 022694 77 AKCVTYNKVVGIF---GF--TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY 151 (293)
Q Consensus 77 ~r~~t~~~~~~~~---g~--~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~ 151 (293)
+++++++++.++. ++ .++.++|+|+||+|||| ||+.|++| +||||.||+||+++|||+|+|||+
T Consensus 138 ~~~~~~~~m~~~~~~k~r~~~~~i~~g~f~YP~LQaa--------Dil~~~~~---~vp~G~DQ~~~i~l~rdla~r~n~ 206 (375)
T 2cyc_A 138 SKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVA--------DIFYQGVT---IAHAGMDQRKAHVIAIEVAQKLRY 206 (375)
T ss_dssp HTTSBHHHHHHTGGGGTCCCCTTCBTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGCSS
T ss_pred hceeEHHHHhccchhhhhccCCCCChHHHHHHHHHHH--------HHHHhCCC---eecccchHHHHHHHHHHHHHHhCC
Confidence 8888888887654 22 23478999999999999 89999996 799999999999999999999998
Q ss_pred --------C-CcccccccccccccCC----------------ccccccCCCCceeeeccChHHHHHHhhhcccCCCchhH
Q 022694 152 --------H-KPALIESSFFPALQGE----------------TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV 206 (293)
Q Consensus 152 --------~-~p~~l~~~~lpgL~g~----------------~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~ 206 (293)
. +|.++++|+||||+|| ++|||||.|+++|+|+|+|++|++||++ |+|||..+
T Consensus 207 ~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~-A~t~~~~~- 284 (375)
T 2cyc_A 207 HPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAREV- 284 (375)
T ss_dssp SCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHH-SCCCTTCC-
T ss_pred cccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHH-hcCCCCCC-
Confidence 4 7888889999999997 4799999988899999999999999999 99987532
Q ss_pred HHHHHcCCCeeeeecceeeeeeec-------------------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHH
Q 022694 207 ELHRKLGANLEVDIPVKYLSFFLE-------------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH 267 (293)
Q Consensus 207 ~~~~~~~~~p~~~~~~~~l~~~~~-------------------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pi 267 (293)
+.+.++.|+++|+. +.+++++|+++|.+|+++|+++|++||+.|+++|+|+
T Consensus 285 ----------~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pi 354 (375)
T 2cyc_A 285 ----------RYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPI 354 (375)
T ss_dssp ----------SSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHH
T ss_pred ----------CCChHHHHHHHHhcCCCCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 23444455554421 2568999999999998999999999999999999999
Q ss_pred HHHHHhhhH--HHHHhh
Q 022694 268 QVARAAVTD--EMVDAF 282 (293)
Q Consensus 268 r~~~~~~~~--~~l~~i 282 (293)
|+++++..+ +.++++
T Consensus 355 r~~~~~~~~~~~~~~~~ 371 (375)
T 2cyc_A 355 RRYFEKHPEPLELMRSV 371 (375)
T ss_dssp HHHHHHCCHHHHHHHHC
T ss_pred HHHHHhChhHHHHHHhc
Confidence 999996532 255544
No 23
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=9.7e-58 Score=429.23 Aligned_cols=254 Identities=18% Similarity=0.268 Sum_probs=203.9
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeecccc-cch-hhhhhHHhhhhee
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG-AFYKNMVKVAKCV 80 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~-~~~~~~~~l~r~~ 80 (293)
+|||++ |+.++++||||||+++++ .+++++++++++++++|+|||+||+|++||.||+| ++| .+|..+..+++++
T Consensus 66 ~~lQ~~-G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~~~ 144 (348)
T 2j5b_A 66 NNMIEC-GGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFS 144 (348)
T ss_dssp HHHHHT-TEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHhhe
Confidence 679995 999999999999999875 58999999999999999999999999999999998 444 6777776777777
Q ss_pred eecceeeec---cc--cCCccccccccCCcccCCCCCCCCCcccCC---CCccceeccccccCCcccccccccCCccCCC
Q 022694 81 TYNKVVGIF---GF--TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG---KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH 152 (293)
Q Consensus 81 t~~~~~~~~---g~--~~~~~~g~~~YP~lqaad~~~~~~~Dil~~---~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~ 152 (293)
+++++.+.. ++ .++.++|+|+||+|||| ||+.+ ++| +||||.||++|+++|||+|+|||+.
T Consensus 145 ~~~~m~~~~~~~~r~~~~~i~~g~f~YP~lQaa--------Dil~~~~~~~~---~~~~G~DQ~~~i~l~Rdia~r~~~~ 213 (348)
T 2j5b_A 145 TISRVKRCCQIMGRNESDCLKASQIFYPCMQAA--------DVFELVPEGID---ICQLGIDQRKVNMLAIEYANDRGLK 213 (348)
T ss_dssp HHHHHTC-----------------CCHHHHHHH--------HHHHSSTTCCS---EECCBGGGHHHHHHHHHHHHHTTCC
T ss_pred eHHHHHhhhhhhhhhccCCcChHHHhhHHHHHH--------HHHHHhcCCCc---EEEeccChHHHHHHHHHHHHHhCCC
Confidence 777766532 22 23568999999999999 89999 885 7999999999999999999999998
Q ss_pred CcccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeee----ecceeeeee
Q 022694 153 KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD----IPVKYLSFF 228 (293)
Q Consensus 153 ~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~----~~~~~l~~~ 228 (293)
.|.++++++||||+|+++|||||.++++|+|+|+|++|++|||+ |+|||..+ + ||.+. +++++++.|
T Consensus 214 ~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~p~~i~kKI~k-a~td~~~~-------~-~~~~~~~~~~~~~~~~~~ 284 (348)
T 2j5b_A 214 IPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDTEQEVSEKISR-AYCTDETF-------D-NPIFEYIKYLLLRWFGTL 284 (348)
T ss_dssp CCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCCHHHHHHHHHH-SCCCSSST-------T-CHHHHHHHHTHHHHHSCE
T ss_pred CceeecCccccCCCCcccccccCCCCCeEeecCCHHHHHHHHhc-ccCCCCCC-------C-CchHhHHHHhhhhhhccc
Confidence 89998899999997656899999987899999999999999999 99998632 2 44332 112222211
Q ss_pred e---cChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q 022694 229 L---EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDA 281 (293)
Q Consensus 229 ~---~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~ 281 (293)
+ .+++++++|+++|+ | ++|+++|+.||+.|+++|+|||+++++.+...+.+
T Consensus 285 ~i~~~~~~~~~el~~~~~-~-~~~~~~K~~la~~l~~~l~pir~~~~~~~~~~~~~ 338 (348)
T 2j5b_A 285 NLCGKIYTDIESIQEDFS-S-MNKRELKTDVANYINTIIDLVREHFKKPELSELLS 338 (348)
T ss_dssp EETTEEESSHHHHHHHHT-T-SCHHHHHHHHHHHHHHHHHHHHHHTTSGGGHHHHH
T ss_pred ccccCCcchHHHHHHHHc-c-cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 1 13567999999999 5 89999999999999999999999998764333333
No 24
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.6e-57 Score=458.85 Aligned_cols=269 Identities=20% Similarity=0.274 Sum_probs=229.2
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeecccc-cch--hhhhhHHhhhhe
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY-VGG--AFYKNMVKVAKC 79 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~-~~~--~~~~~~~~l~r~ 79 (293)
+|||++ ||.++|+||||||+++++ .+++++++++++++++|+|||+||+|++||.||+| +++ .+|..+.++++.
T Consensus 66 ~~lQ~~-G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~ 144 (690)
T 3p0j_A 66 NKCTAA-GCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQ 144 (690)
T ss_dssp HHHHHT-TEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHT
T ss_pred HHHHHC-CCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhh
Confidence 469995 999999999999999864 78999999999999999999999999999999985 454 578888888999
Q ss_pred eeecceeeec---ccc-CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCC-Cc
Q 022694 80 VTYNKVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KP 154 (293)
Q Consensus 80 ~t~~~~~~~~---g~~-~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~-~p 154 (293)
+|++++.++. |+. .++++|+|+||+|||| ||+.+++| +||||.||+||+++|||+|+|||+. +|
T Consensus 145 ~tv~~m~~~~~~~~r~~~~i~~g~f~YPlLQAa--------Dil~~~ad---~vpvG~DQ~~~l~l~Rdla~r~n~~~~p 213 (690)
T 3p0j_A 145 NTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCC--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKP 213 (690)
T ss_dssp SCHHHHHTTC-------CCCCCSCSSHHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHTTCCCCC
T ss_pred CCHHHHHhhhhhhhhccCCCchhhHhhHHHHHH--------HHHhhCCC---EEeccccHHHHHHHHHHHHHHhCCCCCc
Confidence 9998887643 332 2379999999999999 89999996 7999999999999999999999985 68
Q ss_pred ccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCch-hHHHHHHcCCC---eeeeecceeeeeeec
Q 022694 155 ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE-SVELHRKLGAN---LEVDIPVKYLSFFLE 230 (293)
Q Consensus 155 ~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~-~~~~~~~~~~~---p~~~~~~~~l~~~~~ 230 (293)
.++++|+||||+++++|||||++||+|+|+|+|++|++|||+ |+||++. +..++.++|++ ++.++++.|+.++..
T Consensus 214 ~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D~p~~i~kKI~~-A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~ 292 (690)
T 3p0j_A 214 VILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVY 292 (690)
T ss_dssp EEEEBCCCCCSSTTCSSCBTTBGGGSCBTTCCHHHHHHHHHT-SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTT
T ss_pred eEeecCeeecCCCCCcCCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCcccccccccCCCCcccCCCCchHHHHHHHhhc
Confidence 888899999994335799999998899999999999999999 9999764 11122344444 578889999887631
Q ss_pred ------------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHhhhccc
Q 022694 231 ------------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAVR 286 (293)
Q Consensus 231 ------------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~--~l~~il~~~ 286 (293)
+++++++|+++|++|+++|++||+.|++.|+++|+|||+||++..++ ++++++.-+
T Consensus 293 ~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae~i~~~L~Pirer~~~~~~~~~~l~~v~~~~ 362 (690)
T 3p0j_A 293 ARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKSYR 362 (690)
T ss_dssp TSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred ccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHh
Confidence 35689999999999999999999999999999999999999998765 788776543
No 25
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=4.7e-55 Score=407.79 Aligned_cols=242 Identities=23% Similarity=0.336 Sum_probs=212.1
Q ss_pred HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch-hhhhhHHhhhheeeec
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYN 83 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t~~ 83 (293)
+|||++ |+.++|+||||||++++..+++++++++++++++|+|||+||++++||.||+|+.+ .++..+..+++.+|++
T Consensus 57 ~~lq~~-g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~ 135 (323)
T 2cyb_A 57 MDLQEA-GFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLN 135 (323)
T ss_dssp HHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHH
T ss_pred HHHHHC-CCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCHH
Confidence 569995 99999999999999986459999999999999999999999999999999999754 6777778888888888
Q ss_pred ceeeec---ccc-CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694 84 KVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 159 (293)
Q Consensus 84 ~~~~~~---g~~-~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~ 159 (293)
++.++. ++. ++.++|+|+||+|||| |++.++++ +||||.||++|++++|++|+|||+++|..+++
T Consensus 136 ~l~~~~~~~~~~~~~~~~g~~~YP~lqaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~ 204 (323)
T 2cyb_A 136 RARRSMDEVSRRKEDPMVSQMIYPLMQAL--------DIAHLGVD---LAVGGIDQRKIHMLARENLPRLGYSSPVCLHT 204 (323)
T ss_dssp HHHHHTTTTCSCSSSCBTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEE
T ss_pred HHhccchhhccccCCCCchhhhhHHHHHH--------HHHhcCCC---EEEechhhHHHHHHHHHHHHhcCCCCceEEec
Confidence 887653 332 3458999999999999 89999995 79999999999999999999999999999999
Q ss_pred cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeee----------
Q 022694 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL---------- 229 (293)
Q Consensus 160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~---------- 229 (293)
|+||||+| +||||| ++|+|+|+|+|++|++||++ |+||++. ++.++++.|+++|.
T Consensus 205 pll~~l~G--~KMSKS-~~n~I~l~d~p~~i~~Ki~~-a~td~~~-----------~~~~~~~~~~~~~~~p~~~~~~i~ 269 (323)
T 2cyb_A 205 PILVGLDG--QKMSSS-KGNYISVRDPPEEVERKIRK-AYCPAGV-----------VEENPILDIAKYHILPRFGKIVVE 269 (323)
T ss_dssp CCCBCTTS--SBCCTT-TTCSCBTTCCHHHHHHHHHT-SCCCTTC-----------CTTCHHHHHHHHTHHHHHSCEEEC
T ss_pred CcccCCCC--CcccCC-cCceeCCCCCHHHHHHHHHh-cCCCCCC-----------CCcChHHHHHHHHhccccCceeEe
Confidence 99999998 799999 55799999999999999999 9998753 22355666666653
Q ss_pred ------c--ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022694 230 ------E--DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 273 (293)
Q Consensus 230 ------~--~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~ 273 (293)
. +++++++|+++|++|+++|++||+.||+.|+++|+|||+||++
T Consensus 270 ~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~~l~pir~~~~~ 321 (323)
T 2cyb_A 270 RDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNMLLEDARKRLGV 321 (323)
T ss_dssp CCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhhcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 3458999999999999999999999999999999999999975
No 26
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=2.6e-53 Score=402.55 Aligned_cols=246 Identities=20% Similarity=0.227 Sum_probs=200.6
Q ss_pred HHHHhhcCCcEEEEeecccchhhcccChHHHHHHH---Hhc-cc-chhhcccCCCceeEeeccccc-chhhhhhHHhhhh
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLA---REN-AK-DIIACGFDVTKTFIFSDFDYV-GGAFYKNMVKVAK 78 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~---~~~-~~-~~lA~Gldp~k~~i~~qs~~~-~~~~~~~~~~l~r 78 (293)
+|+|+ .|+.++|+||||||+|+++.+.+++.++. ++. +. .++|||+||+++.+|.||+|+ ...++..++++++
T Consensus 60 ~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~ 138 (372)
T 1n3l_A 60 ADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSS 138 (372)
T ss_dssp HHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHT
T ss_pred HHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHHHh
Confidence 56787 49999999999999998656666664444 332 44 468999999999999999995 3467777788998
Q ss_pred eeeecceeee----ccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCc
Q 022694 79 CVTYNKVVGI----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP 154 (293)
Q Consensus 79 ~~t~~~~~~~----~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p 154 (293)
.+|+.++++. .++.++.++|+|+||+|||| ||+.++++ +||||.||++|++++|++++|||+++|
T Consensus 139 ~~t~~~~~~~~~~v~~~~~~~~~g~~~YP~lQaa--------Dil~~~a~---~v~~G~DQ~~~~~l~rdl~~r~~~~~p 207 (372)
T 1n3l_A 139 VVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQAL--------DEEYLKVD---AQFGGIDQRKIFTFAEKYLPALGYSKR 207 (372)
T ss_dssp TSCHHHHHHHTTTTSCCCSSCCHHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCC
T ss_pred hCcHHHHHhchhhhhcccCCCcceeeecchHhhc--------cHHHhcCC---EEEcChhHHHHHHHHHHHHHHcCCCCC
Confidence 8888887764 23346679999999999999 89999995 799999999999999999999999999
Q ss_pred ccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeee----eecceeeeeeec
Q 022694 155 ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV----DIPVKYLSFFLE 230 (293)
Q Consensus 155 ~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~----~~~~~~l~~~~~ 230 (293)
..+++|+||||+| +|||||++|++|+|+|+|++|++|||+ |+|||+.+ +++|.. .++|++++.|+.
T Consensus 208 ~~l~~pll~gldG--~KMSKS~~ns~I~L~d~p~~i~kKi~~-A~td~~~~-------~d~~v~~~lk~~l~~~~~~f~~ 277 (372)
T 1n3l_A 208 VHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKK-AFCEPGNV-------ENNGVLSFIKHVLFPLKSEFVI 277 (372)
T ss_dssp EEEEECCCCCSSC--C-------CCSCBTTCCHHHHHHHHHT-CCCCTTCC-------SSCHHHHHHHHTTGGGTTCEEE
T ss_pred EEEecCccCCCCc--ccccCCCCCCeEeccCCHHHHHHHHHH-ccCCCCCC-------CcccHHHHHHHhhhhhhcceee
Confidence 9999999999998 699999998899999999999999999 99998643 233322 345555555642
Q ss_pred ----------ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 022694 231 ----------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 272 (293)
Q Consensus 231 ----------~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~ 272 (293)
+++++++|+++|.+|+++|+++|+.||+.|+++|+|+|++++
T Consensus 278 er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 278 LRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN 329 (372)
T ss_dssp CCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 457899999999999899999999999999999999999998
No 27
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=2.5e-53 Score=394.45 Aligned_cols=236 Identities=19% Similarity=0.233 Sum_probs=205.4
Q ss_pred HHHHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccch-hhhhhHHhhhheeeec
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYN 83 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~-~~~~~~~~l~r~~t~~ 83 (293)
+|||++ |+.++|+|||+||++++..+++++++++++++++|+|||+| ++++.||+|+++ .+|..+..+++.+|++
T Consensus 53 ~~lQ~~-g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t~~ 128 (314)
T 2zp1_A 53 IDLQNA-GFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTTLK 128 (314)
T ss_dssp HHHHHT-TEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSCHH
T ss_pred HHHHHC-CCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCcHH
Confidence 679995 99999999999999986469999999999999999999999 778889999875 5777777888888888
Q ss_pred ceeeec---ccc-CCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694 84 KVVGIF---GFT-GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 159 (293)
Q Consensus 84 ~~~~~~---g~~-~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~ 159 (293)
++.++. ++. ++.++|+|+||+|||| ||+.++++ +||||.||++|++++|++++ ++|.++++
T Consensus 129 ~l~~~~~~~~~~~~~~~~g~~~YP~LQaa--------Dil~~~~~---~v~~G~DQ~~~~~l~R~i~~----~~~~~~~~ 193 (314)
T 2zp1_A 129 RARRSMELIAREDENPKVAEVIYPIMQVN--------TSHYLGVD---VAVGGMEQRKIHMLARELLP----KKVVCIHN 193 (314)
T ss_dssp HHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHHSS----SCCEEEEE
T ss_pred HHhccchhhhhccCCCCchhhhhHHHHHH--------hHHhhCCC---EEEcChhHHHHHHHHHHhcC----CCcEEeec
Confidence 777643 222 2248999999999999 89999985 79999999999999999997 68888999
Q ss_pred cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeee----------
Q 022694 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL---------- 229 (293)
Q Consensus 160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~---------- 229 (293)
|+||||+| ++||||| ++|+|+|+|+|++|++|||+ |+|||+.+ +.+++|.|+++|.
T Consensus 194 ~~l~~l~G-~~KMSKS-~~~~I~L~d~~~~i~~KI~~-a~td~~~~-----------~~~~~~~~~~~~~~~~~~i~r~~ 259 (314)
T 2zp1_A 194 PVLTGLDG-EGKMSSS-KGNFIAVDDSPEEIRAKIKK-AYCPAGVV-----------EGNPIMEIAKYFLEYPLTIKRPE 259 (314)
T ss_dssp CCCBCTTS-SSBCCTT-TTCSCBTTCCHHHHHHHHHH-SCCCTTCC-----------TTCHHHHHHHHHCCSSEEECCCG
T ss_pred cccccCCc-ccccCCC-CcceecCCCCHHHHHHHHHh-CCCCCCCC-----------CCCcHHHHHHHHhcCCcceeehh
Confidence 99999997 4799999 66799999999999999999 99997643 2366777777764
Q ss_pred -----cChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022694 230 -----EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 273 (293)
Q Consensus 230 -----~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~ 273 (293)
.++.++++|+++|++|+++|+++|+.||+.|+++|+|+|++++.
T Consensus 260 k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l~p~r~~~~~ 308 (314)
T 2zp1_A 260 KFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKILEPIRKRLLE 308 (314)
T ss_dssp GGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 14568999999999999999999999999999999999999975
No 28
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-52 Score=396.64 Aligned_cols=262 Identities=19% Similarity=0.197 Sum_probs=203.5
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc-cChHHHHHHHH----hcccchhhcccCCCceeEeecccccc-hhhhhhHHhhhh
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLAR----ENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAK 78 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~-~~~~~i~~~~~----~~~~~~lA~Gldp~k~~i~~qs~~~~-~~~~~~~~~l~r 78 (293)
.|+|. .|+.++|+|+||||+|+++ .+.+.++.+++ .+.+.|+|||+||+++.+|.||+|.. ..|+..++.++.
T Consensus 64 ~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~ 142 (394)
T 2dlc_X 64 ADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSN 142 (394)
T ss_dssp HHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHT
T ss_pred HHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHhC
Confidence 45776 4999999999999999865 67777777753 34446789999999999999999975 356677778888
Q ss_pred eeeecceeeec----cccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCc
Q 022694 79 CVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP 154 (293)
Q Consensus 79 ~~t~~~~~~~~----g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p 154 (293)
.+|++++++.. ++.++.++|+|+||+|||| |++.++++ +||||.||++|++++|+++++||+++|
T Consensus 143 ~~t~~~l~r~~~~~~r~~~~~~~g~~~YP~lQaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdl~~r~~~~~p 211 (394)
T 2dlc_X 143 IVSQNDAKRAGADVVKQVANPLLSGLIYPLMQAL--------DEQFLDVD---CQFGGVDQRKIFVLAEENLPSLGYKKR 211 (394)
T ss_dssp TSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCC
T ss_pred cCcHHHHhcccHhhhcccCCccceeeechhHhhc--------cHhhhCCC---EEecCccHHHHHHHHHHHHHHcCCCCC
Confidence 88888876541 2235678999999999999 89999996 799999999999999999999999999
Q ss_pred ccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhH---------------HHHHHcCCCeeee
Q 022694 155 ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV---------------ELHRKLGANLEVD 219 (293)
Q Consensus 155 ~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~---------------~~~~~~~~~p~~~ 219 (293)
..+++|+||||+| ++|||||++|++|+|+|+|++|++|||+ |+|||+.+. +++++.|+++.+.
T Consensus 212 ~~l~~pll~gl~~-G~KMSKS~~ns~I~L~D~p~~i~kKI~k-a~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~ 289 (394)
T 2dlc_X 212 AHLMNPMVPGLAQ-GGKMSASDPNSKIDLLEEPKQVKKKINS-AFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFF 289 (394)
T ss_dssp EEEEECCCCCCC-----------CCSCBTTCCHHHHHHHHHH-SCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTTCCCEE
T ss_pred EEEecccccCCCC-CCcCCCCCCCCEEeccCCHHHHHHHHHH-hcCCCCCCCcchHHHHHHhhhcchhhhcccCCCceEE
Confidence 9999999999992 3799999998789999999999999999 999996531 1222234433322
Q ss_pred e--cceeeeeeecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc
Q 022694 220 I--PVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMA 284 (293)
Q Consensus 220 ~--~~~~l~~~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~~~~l~~il~ 284 (293)
+ -..++..+ +++++++|+++|.+|.++|++||+.||+.|+++|+|+|++++.-. ..++++.
T Consensus 290 i~~~~~~~~~~--~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~~~~--~~~~~~~ 352 (394)
T 2dlc_X 290 IDRPEKFGGPI--TYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNK--EFQEASE 352 (394)
T ss_dssp ECCCGGGSCCE--EESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHH
T ss_pred EeccccccCcC--CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHCCH--HHHHHHh
Confidence 1 11124555 567899999999999899999999999999999999999988432 3555554
No 29
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=1.5e-51 Score=383.56 Aligned_cols=234 Identities=15% Similarity=0.154 Sum_probs=198.0
Q ss_pred HHHHhhcCCcEEEEeecccchhhccc---------ChHHHHHHH---HhcccchhhcccCCCceeEeecccccch----h
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKNL---------SVEESQRLA---RENAKDIIACGFDVTKTFIFSDFDYVGG----A 68 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~~---------~~~~i~~~~---~~~~~~~lA~Gldp~k~~i~~qs~~~~~----~ 68 (293)
+|||++ |+.++++|||+||+++++. +++++++|+ +++++.|+|||+||+|++||.||+|+.+ +
T Consensus 59 ~~lQ~~-g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~ 137 (322)
T 2yxn_A 59 KRFQQA-GHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLT 137 (322)
T ss_dssp HHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHH
T ss_pred HHHHHc-CCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcHHH
Confidence 679995 9999999999999998652 899999999 8999999999999999999999999865 2
Q ss_pred hhhhHH---hhhheeeecceeeeccc-cCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccccCCcccc
Q 022694 69 FYKNMV---KVAKCVTYNKVVGIFGF-TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFR 140 (293)
Q Consensus 69 ~~~~~~---~l~r~~t~~~~~~~~g~-~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~~~~ 140 (293)
|+.+++ .++++.+...++.++++ .++.++|+|+||+|||| ||+.+ +++ +++||.||+||++
T Consensus 138 ~l~~~~~~~~v~~m~~~~~~k~r~~~~~~~is~g~f~YP~LQaa--------Dil~l~~~~~~~---v~~gG~DQ~~~i~ 206 (322)
T 2yxn_A 138 FLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGY--------DFACLNKQYGVV---LCIGGSDQWGNIT 206 (322)
T ss_dssp HHHHTGGGCCHHHHTTCHHHHHHHHCTTCCCCHHHHTHHHHHHH--------HHHHHHHHHCEE---EEEECTTCHHHHH
T ss_pred HHHHHhccccHHHHhhhHHHHHHhccCCCCccchhhhHHHHHHH--------HHHHHhccCCce---EEecCchhHHHHH
Confidence 333222 45555554444544442 34579999999999999 89999 885 5778999999999
Q ss_pred cccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHHcCCCee
Q 022694 141 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLE 217 (293)
Q Consensus 141 laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~ 217 (293)
+|||+|+|||+.+|..+++|+||||+| +|||||.+| +|+|+| +|+++++||++ + + +
T Consensus 207 l~rdla~r~n~~~~~~l~~pll~gldG--~KMSKS~~n-~I~L~d~~tsp~~~~~ki~~-~-~--------------d-- 265 (322)
T 2yxn_A 207 SGIDLTRRLHQNQVFGLTVPLITKADG--TKFGKTEGG-AVWLDPKKTSPYKFYQFWIN-T-A--------------D-- 265 (322)
T ss_dssp HHHHHHHHHHCCCCEEEECCCCBCTTS--CBTTEETTE-ECBSSTTTSCHHHHHHHHHT-C-C--------------H--
T ss_pred HHHHHHHHhCCCCceeeccCccCCCCc--ccccCCCCC-eeeccCCCCCHHHHHHHHhC-C-C--------------c--
Confidence 999999999998888889999999998 699999997 999999 99999999999 5 1 1
Q ss_pred eeecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 022694 218 VDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 273 (293)
Q Consensus 218 ~~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~ 273 (293)
+.+++|+++|+. +++++++|+++|.+|. +++++|+.||+.|+++|+|.+++++.
T Consensus 266 -~~v~~~l~~~~~~~~~~i~~l~~~~~~g~-~~~~~K~~La~~i~~~l~~~~~~~~a 320 (322)
T 2yxn_A 266 -ADVYRFLKFFTFMSIEEINALEEEDKNSG-KAPRAQYVLAEQVTRLVHGEEGLQAA 320 (322)
T ss_dssp -HHHHHHHHHHCCCCHHHHHHHHHHHHHHS-SCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -ccHHHHHHHHHcCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 234566666653 7889999999999886 99999999999999999999998765
No 30
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=2.6e-51 Score=394.47 Aligned_cols=242 Identities=18% Similarity=0.151 Sum_probs=199.9
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccC--CCceeEeecccccchhhhhhH
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYKNM 73 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gld--p~k~~i~~qs~~~~~~~~~~~ 73 (293)
+|||++ |+.++++|||+||+++++ .+++++++|+..+.+++. +|+| |+|++||.||+|.++.++..+
T Consensus 63 ~~lQ~~-G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~~~ 140 (432)
T 1h3f_A 63 RQFQEL-GHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLTFKEV 140 (432)
T ss_dssp HHHHHT-TCEEEEEECCCC---------------------HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHHHH
T ss_pred HHHHHC-CCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCcHHHH
Confidence 679995 999999999999999864 468999999988777766 7899 999999999999988778888
Q ss_pred Hhhhheeeecceeeeccc------cCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCC
Q 022694 74 VKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 147 (293)
Q Consensus 74 ~~l~r~~t~~~~~~~~g~------~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~ 147 (293)
+++++++|++++.++.++ .++.++|+|+||+|||| ||+.++++ +||||.||++|++++||+++
T Consensus 141 l~l~~~~tv~~ml~~~~~k~r~~~~~~is~~ef~YPlLQaa--------Dil~l~~~---l~~gG~DQ~~ni~l~rdlar 209 (432)
T 1h3f_A 141 VRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAY--------DSVAIRAD---VEMGGTDQRFNLLVGREVQR 209 (432)
T ss_dssp HHHHTTSBHHHHTTSHHHHHHHHTTCCCBGGGGTHHHHHHH--------HHHHHTCS---EEEEEGGGHHHHHHHHHHHH
T ss_pred HHHhCcCcHHHHHhhhhHHHHhhcCCCCCccccchhhHHhh--------hhhhcCcc---EEEechHHHHHHHHHHHHHH
Confidence 889999999988766543 25689999999999999 89999985 79999999999999999999
Q ss_pred ccCCCCcccccccccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeee
Q 022694 148 RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 227 (293)
Q Consensus 148 r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~ 227 (293)
|||..+|..+++|+||||+| ++|||||.+| +|+|+|+|++|++||++ +.+ ++++.|+++
T Consensus 210 r~~~~~~~~lt~pll~gldG-~~KMSKS~~n-~I~L~dsp~~i~~Ki~~-~~d------------------~~v~~~l~~ 268 (432)
T 1h3f_A 210 AYGQSPQVCFLMPLLVGLDG-REKMSKSLDN-YIGLTEPPEAMFKKLMR-VPD------------------PLLPSYFRL 268 (432)
T ss_dssp HTTCCCCEEEEECCCBCTTS-SSBCCGGGTC-CCBTTSCHHHHHHHHHT-SCG------------------GGHHHHHHH
T ss_pred HhCCCCceEeecccccCCCC-ccccCcCCCC-eeCCCCCHHHHHHHHhC-CCc------------------cHHHHHHHH
Confidence 99988888889999999998 4699999987 99999999999999999 743 245678888
Q ss_pred eecChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHH----HHHHHHHhhhHH-HHHhhhcc
Q 022694 228 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE----RHQVARAAVTDE-MVDAFMAV 285 (293)
Q Consensus 228 ~~~~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~----pir~~~~~~~~~-~l~~il~~ 285 (293)
|+. .+.+++++.+.. +|+++|+.||+.|+++++ |||+||+++++. ||++++++
T Consensus 269 ft~--~~~eei~~~~~~---~~~~~K~~LA~~i~~~l~~~~~pirerr~~~~~~~~v~~il~~ 326 (432)
T 1h3f_A 269 LTD--LEEEEIEALLKA---GPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFGR 326 (432)
T ss_dssp HCC--CCHHHHHHHHHH---CHHHHHHHHHHHHHHHHHSSSCCSCCSHHHHHHTTCCGGGTTC
T ss_pred cCC--CCHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccchHHHHHHHhhchHHHHHHHhh
Confidence 853 344555555543 899999999999999999 999999999876 89999877
No 31
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=6.3e-50 Score=403.55 Aligned_cols=246 Identities=14% Similarity=0.162 Sum_probs=209.5
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc--cChHHHHHHHHhcccchhhcccCCCceeEeecccccch---hhhhhHHhhhhe
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG---AFYKNMVKVAKC 79 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~~---~~~~~~~~l~r~ 79 (293)
+|+|+.+||.++|+||||||+++++ .+++++++++.+++++|+|||+|| ++.|+.||+|... .||..+++|++.
T Consensus 408 ~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~ 486 (690)
T 3p0j_A 408 DFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPS-SVKIVTENEVILGNCDDFWVSVIGIARK 486 (690)
T ss_dssp HHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCT-TSEEEEHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-CeEEEECCchhccchhhHHHHHHHHHHh
Confidence 6788888999999999999999987 899999999999999999999998 6777778888754 699999999999
Q ss_pred eeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCCCCccceeccccccCCcccccccccCCccCCCCcccccc
Q 022694 80 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 159 (293)
Q Consensus 80 ~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~~ad~~~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~ 159 (293)
+|+++++++++ .++.++|+++||+|||| |++.+++| ++|||+||++|++||||+|++++ +|..+++
T Consensus 487 ~tl~r~~~~~~-~~~~~i~~~~YPlmQaa--------Di~~l~aD---i~~gG~DQ~~~~~LaRd~~~~~~--~~~~~~~ 552 (690)
T 3p0j_A 487 NLLSHVEELYG-GEVRNAGQVIAALMRVA--------TALMLSVS---HVISTSLDGHINAFAREYTKERI--DCVQTLE 552 (690)
T ss_dssp SCHHHHHHHTT-SCCSSHHHHHHHHHHHH--------HHHHTTCS---EEEECSTTTTTTHHHHHHTTTCS--EEEECCC
T ss_pred hhHHHHHHHhC-CCCcchHHHHHHHHHHh--------hhhccCCC---EEecccccHHHHHHHHHHHHhcc--Ccccccc
Confidence 99999999886 57789999999999999 89999997 68999999999999999999976 5777889
Q ss_pred cccccccCCccccccCCCCceeeeccChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeeecceeee----eee-c----
Q 022694 160 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS----FFL-E---- 230 (293)
Q Consensus 160 ~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~----~~~-~---- 230 (293)
+++|+|+||+.+||||+++|+|+|+|+|++|++||++ |||+|+ . ++||.+..+ .|+. -|+ +
T Consensus 553 ~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~k-A~c~p~-v-------e~np~l~~~-~~~~~~~~~~~i~r~~~ 622 (690)
T 3p0j_A 553 GRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPN-E-------EANPVISVA-QHLLAQHGALSIERGEA 622 (690)
T ss_dssp CSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHH-SCCCTT-C-------SCSHHHHHH-HHHHHHHSCEEECCCTT
T ss_pred cccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHH-hcCCCC-C-------CCChHHHHH-HHHhccCCceEEechhh
Confidence 9999999997777788888899999999999999999 999884 2 477766432 2221 011 0
Q ss_pred -----ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022694 231 -----DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 275 (293)
Q Consensus 231 -----~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~ 275 (293)
+++++++|+++|.+|++||+|+|++|++.|+++|+|+|++++-.+
T Consensus 623 ~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~~~~~~ 672 (690)
T 3p0j_A 623 NGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNGEL 672 (690)
T ss_dssp TTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 247899999999999999999999999999999999999998443
No 32
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.3e-49 Score=380.06 Aligned_cols=237 Identities=14% Similarity=0.102 Sum_probs=196.7
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc--------cChHHHHHHHHhc---ccchhhcccCCCceeEeecccccchh-hhhh
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN--------LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGA-FYKN 72 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~--------~~~~~i~~~~~~~---~~~~lA~Gldp~k~~i~~qs~~~~~~-~~~~ 72 (293)
+|||++ |+.++++|||+||+++++ .+++++++|++++ ++.++|||+||+|++||.||+|+++. ++.-
T Consensus 58 ~~lQ~~-G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~ 136 (432)
T 2jan_A 58 RRFQRA-GHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEF 136 (432)
T ss_dssp HHHHHT-TCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHH
T ss_pred HHHHHC-CCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHH
Confidence 679995 999999999999999876 8899999999755 77899999999999999999998753 2222
Q ss_pred HHhhhheeeecceeeeccc-----cCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccccCCccccccc
Q 022694 73 MVKVAKCVTYNKVVGIFGF-----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTR 143 (293)
Q Consensus 73 ~~~l~r~~t~~~~~~~~g~-----~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~~~~laR 143 (293)
+-.+++.+|++++.++.++ .++.++|+|+||+|||| ||+.+ +++ +||||.||++|++++|
T Consensus 137 lr~l~~~~tv~~m~~~~~~k~r~~~~~is~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~ni~lgr 205 (432)
T 2jan_A 137 LRDIGKHFSVNVMLARDTIRRRLAGEGISYTEFSYLLLQAN--------DYVELHRRHGCT---LQIGGADQWGNIIAGV 205 (432)
T ss_dssp HHHTGGGCBHHHHHHSHHHHHHTSTTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEECSTTHHHHHHHH
T ss_pred HHHHhccCcHHHHhcchHHhhhhcCCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHH
Confidence 2224444444444443221 35679999999999999 89999 996 7999999999999999
Q ss_pred ccCCccCCCCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHHcCCCeeeee
Q 022694 144 DVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI 220 (293)
Q Consensus 144 dia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~ 220 (293)
|+|+|||+.+|..++.|+|||++| +|||||.+|++|+|+| ||+++++||++ + + ++++
T Consensus 206 dlarr~~~~~~~~l~~plL~~ldG--~KMSKS~~nsaI~L~d~~tsp~~i~qki~~-~-~--------------D~~v-- 265 (432)
T 2jan_A 206 RLVRQKLGATVHALTVPLVTAADG--TKFGKSTGGGSLWLDPQMTSPYAWYQYFVN-T-A--------------DADV-- 265 (432)
T ss_dssp HHHHHHHCCCCEEEECCCCBCTTS--CBTTBCSSSCBCBSSTTTSCHHHHHHHHHT-C-C--------------HHHH--
T ss_pred HHHHHhCCCCccccccccccCCCc--CcCCCCCCCCeEEccCCCCCHHHHHHHHhc-C-C--------------chhH--
Confidence 999999998888899999999998 6999999988999999 99999999999 5 1 1123
Q ss_pred cceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022694 221 PVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 275 (293)
Q Consensus 221 ~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~ 275 (293)
++|+++|+. +.+++++|+++|.+|. +++++|+.||+.|++++++.++..+...
T Consensus 266 -~~~l~l~t~~~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~~ 319 (432)
T 2jan_A 266 -IRYLRWFTFLSADELAELEQATAQRP-QQRAAQRRLASELTVLVHGEAATAAVEH 319 (432)
T ss_dssp -HHHHHHHSCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCChHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 455555542 6789999999999886 9999999999999999999988766543
No 33
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=1.6e-48 Score=367.21 Aligned_cols=235 Identities=14% Similarity=0.089 Sum_probs=180.9
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccCCCc-----------eeEeecccc
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDVTK-----------TFIFSDFDY 64 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp~k-----------~~i~~qs~~ 64 (293)
+|||+. |+.++++|||+||+|+++ .+++++++|+++++++|+|+ +||++ +.|+.||+|
T Consensus 72 ~~lQ~~-G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w 149 (356)
T 2pid_A 72 FHLQRA-GHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAW 149 (356)
T ss_dssp HHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHH
T ss_pred HHHHHC-CCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEechHh
Confidence 679995 999999999999999864 27999999999999999999 99866 888999999
Q ss_pred cch-hhhhhH------HhhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccc
Q 022694 65 VGG-AFYKNM------VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAI 133 (293)
Q Consensus 65 ~~~-~~~~~~------~~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~ 133 (293)
..+ .++..+ ..+++|.+...++.+....++.++|+|+||+|||| ||+.+ +++ +||||.
T Consensus 150 ~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~~~~is~g~f~YPvLQAa--------Dil~l~~~~~~~---i~p~G~ 218 (356)
T 2pid_A 150 YQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAY--------DFYYLFQRYGCR---VQLGGS 218 (356)
T ss_dssp HTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTSTTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEEEG
T ss_pred hhhccHHHHHHHHhcceeHHHHhcchHHHHhhccCCCCchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccH
Confidence 764 232222 33444444433333332234689999999999999 89999 996 799999
Q ss_pred cCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHH
Q 022694 134 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHR 210 (293)
Q Consensus 134 DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~ 210 (293)
||+||+++|||+|+|||..+|..++.|+||||+| +|||||.+| +|+|+| +|++|++||++ + +
T Consensus 219 DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~-~---------- 283 (356)
T 2pid_A 219 DQLGNIMSGYEFINKLTGEDVFGITVPLITSTTG--AKLGKSAGN-AVWLNRDKTSPFELYQFFVR-Q-P---------- 283 (356)
T ss_dssp GGHHHHHHHHHHHHHHSSCCCEEEEECCCC----------------CCBSSTTTSCHHHHHHHHHT-C-C----------
T ss_pred HHHHHHHHHHHHHHHhCCCCccccccccccCCCc--ccccCCCCC-eeeccCCCCCHHHHHHHHHc-C-C----------
Confidence 9999999999999999998888999999999998 699999765 999999 99999999999 5 1
Q ss_pred HcCCCeeeeecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022694 211 KLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 275 (293)
Q Consensus 211 ~~~~~p~~~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~~ 275 (293)
++++ ++|+.+|+. +.+++++|+++|++| .+++++|+.||+.|+++++..++.++...
T Consensus 284 ----D~~v---~~~l~~~t~~~~~~i~~l~~~~~~g-~~~~~~K~~La~~v~~~l~g~~~~~~a~~ 341 (356)
T 2pid_A 284 ----DDSV---ERYLKLFTFLPLPEIDHIMQLHVKE-PERRGPQKRLAAEVTKLVHGREGLDSAKR 341 (356)
T ss_dssp ----HHHH---HHHHHHHCCCCHHHHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----chhH---HHHHHHHHcCCchHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 1223 345554432 678999999999987 59999999999999999999998876543
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=1.2e-47 Score=367.54 Aligned_cols=233 Identities=15% Similarity=0.178 Sum_probs=192.0
Q ss_pred HHHHhhcCCcEEEEeecccchhhccc---------ChHHHHHHHHhc---ccchhhcccCCCceeEeecccccch----h
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKNL---------SVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGG----A 68 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~~---------~~~~i~~~~~~~---~~~~lA~Gldp~k~~i~~qs~~~~~----~ 68 (293)
+|||++ |+.++++|||+||+++++. +++++++|++.+ +..++++|+||++++||.||+|+++ +
T Consensus 56 ~~lQ~~-G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~ 134 (419)
T 2ts1_A 56 RRFQQA-GHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVIT 134 (419)
T ss_dssp HHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHH
T ss_pred HHHHHC-CCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHH
Confidence 679995 9999999999999998652 999999999755 7788999999999999999999865 2
Q ss_pred hhh---hHHhhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccccCCccccc
Q 022694 69 FYK---NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRM 141 (293)
Q Consensus 69 ~~~---~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~~~~l 141 (293)
|+. ..+.++||.+...+++++ .++.++|+|+||+|||| ||+.+ +++ +||||.||++|+++
T Consensus 135 ~l~~~~~~~tv~rm~~~~~~k~r~--~~~is~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~ni~l 201 (419)
T 2ts1_A 135 FLRDVGKHFSVNYMMAKESVQSRI--ETGISFTEFSYMMLQAY--------DFLRLYETEGCR---LQIGGSDQWGNITA 201 (419)
T ss_dssp HHHHTGGGCCHHHHHTSHHHHTTT--TTCCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHHH
T ss_pred HHHHHhcccCHHHHhccchhhhcc--CCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHH
Confidence 222 234444444444444433 35679999999999999 89999 885 79999999999999
Q ss_pred ccccCCcc-CCCCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHHcCCCee
Q 022694 142 TRDVAPRI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLE 217 (293)
Q Consensus 142 aRdia~r~-n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~ 217 (293)
+||+|+|| |..+|..+++|+|||++| +|||||.+| +|+|+| ||+++++||++ + + +++
T Consensus 202 grdlarr~~~~~~~~~lt~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~-~--------------D~~ 262 (419)
T 2ts1_A 202 GLELIRKTKGEARAFGLTIPLVTKADG--TKFGKTESG-TIWLDKEKTSPYEFYQFWIN-T-D--------------DRD 262 (419)
T ss_dssp HHHHHHHHHC--CCEEEEECCCCCTTS--CCTTCCSSC-CCBSSTTTSCHHHHHHHHHT-C-C--------------HHH
T ss_pred HHHHHHHhcCCCCeeecccccccCCCc--ccccCCCCC-eEecCCCCCCHHHHHHHHhc-C-C--------------chh
Confidence 99999999 988888899999999998 699999875 999999 99999999999 4 1 112
Q ss_pred eeecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022694 218 VDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 274 (293)
Q Consensus 218 ~~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~ 274 (293)
++.|+++|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+..
T Consensus 263 ---v~~~l~l~t~~~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a~ 316 (419)
T 2ts1_A 263 ---VIRYLKYFTFLSKEEIEALEQELREAP-EKRAAQKTLAEEVTKLVHGEEALRQAI 316 (419)
T ss_dssp ---HHHHHHHHCCCCHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3455555542 6789999999999886 999999999999999999988776543
No 35
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=1.2e-46 Score=361.20 Aligned_cols=234 Identities=14% Similarity=0.184 Sum_probs=197.4
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcccCC---CceeEeecccccch-hhhh
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGFDV---TKTFIFSDFDYVGG-AFYK 71 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~Gldp---~k~~i~~qs~~~~~-~~~~ 71 (293)
+|||++ |+.++++|||+||+++++ ++++++++|++++.++++|+ +|| ++++||.||+|+.+ .++.
T Consensus 58 ~~lQ~~-G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~ 135 (420)
T 1jil_A 58 RRFQEH-GHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLIS 135 (420)
T ss_dssp HHHHHT-TCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHH
T ss_pred HHHHHC-CCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHH
Confidence 679995 999999999999999865 29999999999999999988 888 99999999999854 3333
Q ss_pred hHHhhhheeeecceeeeccc----cCCccccccccCCcccCCCCCCCCCcccCC----CCccceeccccccCCccccccc
Q 022694 72 NMVKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTR 143 (293)
Q Consensus 72 ~~~~l~r~~t~~~~~~~~g~----~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vpvG~DQ~~~~~laR 143 (293)
-+..+++++|++++.++.++ .++.++|+|+||+|||| ||+.+ +++ +||||.||++|++++|
T Consensus 136 ~l~~~~~~~tv~~m~~~~~~k~r~~~~is~~ef~YplLQaa--------D~l~l~~~~~~~---i~~gG~DQ~~ni~~gr 204 (420)
T 1jil_A 136 FLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAI--------DFGHLNRELNCK---IQVGGSDQWGNITSGI 204 (420)
T ss_dssp HHHHTGGGCCHHHHHTCGGGHHHHTTTCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEEEEGGGHHHHHHHH
T ss_pred HHHHHhccccHHHHhcchhhhhhccCCcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHH
Confidence 23346666666666655433 35679999999999999 89999 885 7999999999999999
Q ss_pred ccCCcc-CCCCcccccccccccccCCccccccCCCCceeeecc---ChHHHHHHhhhcccCCCchhHHHHHHcCCCeeee
Q 022694 144 DVAPRI-GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVD 219 (293)
Q Consensus 144 dia~r~-n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i~~KI~k~A~t~~~~~~~~~~~~~~~p~~~ 219 (293)
|+|+|| |..+|..+++|+|||++| +|||||.+| +|+|+| ||+++++||++ + + +++
T Consensus 205 dla~r~~~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~-~--------------D~~-- 263 (420)
T 1jil_A 205 ELMRRMYGQTDAYGLTIPLVTKSDG--KKFGKSESG-AVWLDAEKTSPYEFYQFWIN-Q-S--------------DED-- 263 (420)
T ss_dssp HHHHHHHCCCCCEEEEECCCBCTTS--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C-C--------------HHH--
T ss_pred HHHHHhcCCCCeeEeecccccCCcc--ccccCCCCC-eEecCCCCCCHHHHHHHHhc-C-C--------------chh--
Confidence 999999 988888899999999998 699999976 999999 99999999999 4 1 112
Q ss_pred ecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022694 220 IPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 274 (293)
Q Consensus 220 ~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~~~~~~ 274 (293)
++.|+++|+. +.+++++++++|.+|. +++++|+.||+.|++++++.++..+..
T Consensus 264 -v~~~l~~~t~~~~~ei~~l~~~~~~g~-~~~~~K~~La~~v~~~~hg~~~~~~a~ 317 (420)
T 1jil_A 264 -VIKFLKYFTFLGKEEIDRLEQSKNEAP-HLREAQKTLAEEVTKFIHGEDALNDAI 317 (420)
T ss_dssp -HHHHHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3455555542 6789999999999886 999999999999999999988776543
No 36
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=9.5e-47 Score=358.93 Aligned_cols=236 Identities=14% Similarity=0.087 Sum_probs=190.0
Q ss_pred HHHHhhcCCcEEEEeecccchhhcc---------cChHHHHHHHHhcccchhhcc-----------cC---CCceeEeec
Q 022694 5 RYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACG-----------FD---VTKTFIFSD 61 (293)
Q Consensus 5 k~lQ~~~g~~~~I~iaD~ha~~~~~---------~~~~~i~~~~~~~~~~~lA~G-----------ld---p~k~~i~~q 61 (293)
+|||++ |+.++++|||+||+++++ .+++++++|++++.++++|+| +| |++++||.|
T Consensus 90 ~~lQ~~-G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~n 168 (392)
T 1y42_X 90 FWMYLE-GYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNN 168 (392)
T ss_dssp HHHHHH-TCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEET
T ss_pred HHHHHc-CCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEc
Confidence 679995 999999999999999864 488899999999988888865 45 789999999
Q ss_pred ccccch-h---hhhhHH---hhhheeeecceeeeccccCCccccccccCCcccCCCCCCCCCcccCC----CCccceecc
Q 022694 62 FDYVGG-A---FYKNMV---KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIP 130 (293)
Q Consensus 62 s~~~~~-~---~~~~~~---~l~r~~t~~~~~~~~g~~~~~~~g~~~YP~lqaad~~~~~~~Dil~~----~ad~~~~vp 130 (293)
|+|..+ . ++..++ ++++|.+...++.+++..++.++|+|+||+|||| ||+.+ +++ +||
T Consensus 169 s~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~~~~is~gef~YPlLQAa--------Dil~l~~~~~~~---i~~ 237 (392)
T 1y42_X 169 NHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGW--------DWFELFYQQGVQ---MQI 237 (392)
T ss_dssp HHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSSSSCCCHHHHHHHHHHHH--------HHHHHHHHHCEE---EEE
T ss_pred cHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcCCCCcccHHHHHHHHHHH--------HHHHHhccCCcc---EEe
Confidence 998543 2 333343 6666665555555554446789999999999999 89866 575 799
Q ss_pred ccccCCcccccccccCCccCC-----------------CCcccccccccccccCCccccccCCCCceeeecc---ChHHH
Q 022694 131 CAIDQDPYFRMTRDVAPRIGY-----------------HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAI 190 (293)
Q Consensus 131 vG~DQ~~~~~laRdia~r~n~-----------------~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D---~~~~i 190 (293)
||.||++|++++||+|+|||. ++|..+++|+||||+| +|||||.+| +|+|+| ||+++
T Consensus 238 gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i 314 (392)
T 1y42_X 238 GGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSG--AKFGKSAGN-AIWLDPYQTSVFDF 314 (392)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTC--CBTTBCSSS-BCBSSTTTSCHHHH
T ss_pred cCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCch--hhccCCCCC-eeeccCCCCCHHHH
Confidence 999999999999999999864 4677788999999998 699999875 999999 99999
Q ss_pred HHHhhhcccCCCchhHHHHHHcCCCeeeeecceeeeeeec-ChHHHHHHHHhccCCCcccHHHHHHHHHHHHHHHHHHHH
Q 022694 191 KNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQV 269 (293)
Q Consensus 191 ~~KI~k~A~t~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~eei~~~y~~g~~~~~~lK~~la~~i~~~l~pir~ 269 (293)
++||++ + + ++++ +.|+.+|+. +.+++++|+++|.+|. +++++|+.||+.|++++++.++
T Consensus 315 ~qki~~-~-~--------------D~~v---~~~l~~ft~l~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~lhg~~~ 374 (392)
T 1y42_X 315 YGYFVR-R-S--------------DQEV---ENLLKLFTFMPISEITKTMEEHIKDP-SKRVAQHTLAREVVTLVHGKQE 374 (392)
T ss_dssp HHHHHT-C-C--------------TTTH---HHHHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHc-C-C--------------chhH---HHHHHHHHhCChhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCHHH
Confidence 999999 5 2 2233 345555442 6789999999999886 9999999999999999999998
Q ss_pred HHHhhh
Q 022694 270 ARAAVT 275 (293)
Q Consensus 270 ~~~~~~ 275 (293)
.++...
T Consensus 375 ~~~a~~ 380 (392)
T 1y42_X 375 ASAAED 380 (392)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877543
No 37
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=97.46 E-value=3.2e-05 Score=75.33 Aligned_cols=72 Identities=17% Similarity=0.120 Sum_probs=54.8
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceee-ecc---ChHHHHHHhhhcccC
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINKYAFS 200 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~D---~~~~i~~KI~k~A~t 200 (293)
|+|..|.|+..+-..-..+.+.||.+.|...|.|+|.+.+| +|||||+++..|. +.+ .|+.|..-+...-.+
T Consensus 205 thviRG~D~~~~t~~q~~l~~alg~~~P~~~H~plil~~~g--~KLSKr~g~~~l~~~r~~G~~peal~~~l~~lG~s 280 (492)
T 2cfo_A 205 TDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTG--QKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWS 280 (492)
T ss_dssp SEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEECSSS--SBCCTTSSCCBHHHHHHTTCCHHHHHHHHHHTTBC
T ss_pred CeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeeeEECCCC--CEecccCCcccHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 57889999998887777777889999898888999999998 7999998764321 111 577777776663333
No 38
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.34 E-value=5.2e-05 Score=69.28 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=33.5
Q ss_pred eccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeeccChHH
Q 022694 128 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 189 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D~~~~ 189 (293)
+|.-|.|+..+...-..+.+.||.+.|...|.|+|.+.+| .|||||..+..|.-.++..-
T Consensus 187 hvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g--~KLSKR~g~~~v~~~~~~~~ 246 (298)
T 1nzj_A 187 EIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLSKQNHAPALPKGDPRPV 246 (298)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---------------CCCSSCCHHH
T ss_pred EEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC--CcccccCCccChhcCCccHH
Confidence 4444999977665555566888999998889999999998 79999987655544444433
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=97.34 E-value=2.5e-05 Score=75.57 Aligned_cols=179 Identities=9% Similarity=0.052 Sum_probs=106.0
Q ss_pred HHH-HhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCcee-------Eeecccccch--hhhhh--
Q 022694 5 RYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------IFSDFDYVGG--AFYKN-- 72 (293)
Q Consensus 5 k~l-Q~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~-------i~~qs~~~~~--~~~~~-- 72 (293)
.|+ -..+|..+++-|-|. +. .....++...++.++..+|++++... .|.||+..+. .+...
T Consensus 25 n~l~Ar~~~G~filRieDt----D~---~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~ 97 (468)
T 1j09_A 25 NYAWARRNGGRFIVRIEDT----DR---ARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELL 97 (468)
T ss_dssp HHHHHHHTTCEEEECBCCC----CT---TSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEEeCcC----CC---cccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeeccCCHHHHHHHHHHHH
Confidence 452 334688888888883 32 12234566677788889999999864 4889887641 11110
Q ss_pred -----------HHhh-------------hheeeecceeeec--cc--------cCC-------ccccccccCCcccCCCC
Q 022694 73 -----------MVKV-------------AKCVTYNKVVGIF--GF--------TGE-------DHIGKVSFPPVQAVPSF 111 (293)
Q Consensus 73 -----------~~~l-------------~r~~t~~~~~~~~--g~--------~~~-------~~~g~~~YP~lqaad~~ 111 (293)
--+| +|..+..+..+.. |. ... .--|.+.+|..+.-
T Consensus 98 ~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~--- 174 (468)
T 1j09_A 98 KRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIP--- 174 (468)
T ss_dssp HHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSC---
T ss_pred HcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeccceeEeecccCCC---
Confidence 0111 1222222111100 10 000 11244555554443
Q ss_pred CCCCCcccCCCCccc----------------eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccC
Q 022694 112 PSSFPHLFSGKDHLR----------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSAS 175 (293)
Q Consensus 112 ~~~~~Dil~~~ad~~----------------~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS 175 (293)
|..++++|.. |+|.-|.|+..|...-.-+.+.||.+.|...+.|++.+.+| .||||+
T Consensus 175 -----D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~li~~~~g--~klSKR 247 (468)
T 1j09_A 175 -----DVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDK--TKISKR 247 (468)
T ss_dssp -----CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--CBCCTT
T ss_pred -----CeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEeeeeeCCCC--Cccccc
Confidence 6666665420 34455999999988888888999998898888899999998 699999
Q ss_pred CCCceee-ecc---ChHHHHHHhhhcccC
Q 022694 176 DPNSAIY-VTD---SAKAIKNKINKYAFS 200 (293)
Q Consensus 176 ~~~s~I~-L~D---~~~~i~~KI~k~A~t 200 (293)
+.+..|. +.+ .|+.|..-+...-++
T Consensus 248 ~g~~~l~~~~~~G~~peal~~~l~~lG~~ 276 (468)
T 1j09_A 248 KSHTSLDWYKAEGFLPEALRNYLCLMGFS 276 (468)
T ss_dssp TSCCBHHHHHHTTCCHHHHHHHHHHHSCC
T ss_pred cchhhHHHHHHCCCCHHHHHHHHHHhccC
Confidence 8764221 111 577777766663333
No 40
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.26 E-value=0.00017 Score=71.63 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=54.0
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc------ChHHHHHHhhh
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 196 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~i~~KI~k 196 (293)
|+|.-|.|+..+...-+.+.+.||.+.|...|.|+|.+.+| .||||++++. .|.+ .|+.|..-+..
T Consensus 317 thvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~g--~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 317 SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR--TPLSKRHGAT--SVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp SBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTTS--SBCCTTTCSS--BHHHHHHTTCCHHHHHHHHTT
T ss_pred CeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccccCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 46677999999999888899999999998888999999998 7999998753 3332 57777777766
No 41
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=97.07 E-value=0.00013 Score=71.03 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=53.6
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc------ChHHHHHHhhh
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 196 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~i~~KI~k 196 (293)
|+|.-|.|+..+...-+.+.+.||.+.|...|.|+|.+.+| +||||++++ +.|.+ .|+.|..-+..
T Consensus 213 ThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g--~KLSKR~g~--~~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 213 SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR--TPLSKRHGA--TSVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTS--SBCCTTTSC--CBHHHHHHHTCCHHHHHHHHHH
T ss_pred CEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCC--CcccCcCCc--ccHHHHHHCCCCHHHHHHHHHH
Confidence 46667999999988888888999999998889999999998 799999875 33332 57777777766
No 42
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=96.91 E-value=0.00021 Score=69.66 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=50.5
Q ss_pred eccccccCCcccccccccCCcc-----CCCCcccccccccccccCCccccccCCCCceee-ecc---ChHHHHHHhhh
Q 022694 128 LIPCAIDQDPYFRMTRDVAPRI-----GYHKPALIESSFFPALQGETGKMSASDPNSAIY-VTD---SAKAIKNKINK 196 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRdia~r~-----n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~D---~~~~i~~KI~k 196 (293)
+|.-|.|+..+...-+.+.+.| |.+.|...+.|++.+.+| +||||++++..|. +.+ .|+.|..-+..
T Consensus 211 hviRG~D~~~~t~~q~~l~~aL~~~g~g~~~P~~~h~plil~~~g--~KLSKR~g~~~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 211 HVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGT--KKLSKRDPQSNLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp EEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECCEECSSS--SBCCTTSGGGBHHHHHHHTCCHHHHHHHHHT
T ss_pred EEEEChhhhhccHHHHHHHHHHHhhcCCCCCCeEEEeeeeECCCC--CcccccCCcccHHHHHhCCCCHHHHHHHHHH
Confidence 4445999999988777777888 998998888999999998 6999998753221 111 56777766665
No 43
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=93.88 E-value=0.0062 Score=58.79 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=37.5
Q ss_pred ccccccCCcccccccccCCccCCCCcc--ccccccc-ccccCCccccccCCCCceeeecc
Q 022694 129 IPCAIDQDPYFRMTRDVAPRIGYHKPA--LIESSFF-PALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 129 vpvG~DQ~~~~~laRdia~r~n~~~p~--~l~~~~l-pgL~g~~~KMSkS~~~s~I~L~D 185 (293)
-.+|.||..|+.--..+++.+|++++. ++...++ -+-+|...|||||.+| .|.+.|
T Consensus 240 yv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn-~v~l~d 298 (464)
T 3fnr_A 240 NIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN-FILMSD 298 (464)
T ss_dssp EEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS-SCBHHH
T ss_pred EEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC-CCCHHH
Confidence 379999999999888888999986542 2334555 2336644699999987 777654
No 44
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=93.19 E-value=0.0074 Score=58.41 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=33.6
Q ss_pred eccccccCCc-ccccccccCCccCCCCcc-cccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDP-YFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~-~~~laRdia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+..+|.||.. |..+--..+..+|.+.|. .+++.+|.. +| +|||||.+| .|.+.|
T Consensus 253 i~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~G--~KMSKS~GN-~i~~~d 308 (497)
T 2csx_A 253 LHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-EG--KKMSKTLGN-VVDPYE 308 (497)
T ss_dssp CEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-SS--SBCCTTTTC-CCCHHH
T ss_pred EEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-CC--ceeCCcCCC-CCCHHH
Confidence 4689999987 443311122234665554 445666654 65 799999987 776543
No 45
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=92.81 E-value=0.01 Score=57.44 Aligned_cols=53 Identities=19% Similarity=-0.019 Sum_probs=34.0
Q ss_pred eccccccCCc-cccc--ccccCCccCCCCcc-cccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDP-YFRM--TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~-~~~l--aRdia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+..+|.||.. |..+ ++- ..+|.+.|. .+++.+|..-+| +|||||.+| .|.+.|
T Consensus 254 i~~~G~D~~~fh~~~~~a~~--~~~g~~~~~~v~~~G~v~~~~G--~KMSKS~GN-~i~p~d 310 (500)
T 2d5b_A 254 WHLIGKDILKPHAVFWPTML--KAAGIPMYRHLNVGGFLLGPDG--RKMSKTLGN-VVDPFA 310 (500)
T ss_dssp EEEEEGGGHHHHHTHHHHHH--HHHTCCCCSEEEEECCEECTTS--SCCCTTTTC-CCCHHH
T ss_pred EEEEeechhhhHHHHHHHHH--HHcCCCCCcEEEECceEEeCCC--CcccccCCC-CCCHHH
Confidence 5689999987 3322 322 224665564 455777764365 799999987 776644
No 46
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=92.53 E-value=0.012 Score=56.97 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=51.7
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceeeecc------ChHHHHHHhhh
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 196 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D------~~~~i~~KI~k 196 (293)
|+|..|.||..|...-.-+.+.+|.+.|...|.|++.+.+| +||||+.++. .|.+ .|+.|..-+..
T Consensus 220 thvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G--~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 220 THVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDG--KKLSKRHGAT--SVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCGGGSCC--BHHHHHHHTCCHHHHHHHHHT
T ss_pred CeEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCC--CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 57889999999888888888999998898788898888887 6999998763 3322 46666666555
No 47
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=89.79 E-value=0.045 Score=57.03 Aligned_cols=57 Identities=26% Similarity=0.132 Sum_probs=34.4
Q ss_pred CCCccceeccccccCCc---ccccccccCCccCCCCc-ccccccccccccCCccccccCCCCceeeec
Q 022694 121 GKDHLRCLIPCAIDQDP---YFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 184 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ~~---~~~laRdia~r~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 184 (293)
+.+| +...|.||.. |-.+....+ -+|..++ .++.+.++...+| +|||||.+| .|...
T Consensus 547 ~P~D---l~~~G~D~~r~wf~~~l~~s~~-~~g~~Pfk~v~~hG~V~d~~G--~KMSKSlGN-vV~P~ 607 (917)
T 1ffy_A 547 FPAD---MYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDGEG--KKMSKSLGN-VIVPD 607 (917)
T ss_dssp SSBS---EEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECTTS--CCCCSSSSC-CCCHH
T ss_pred CCce---EEEEEecccccHHHHHHHHHHH-hhCCCcccceeEeeeEEcCCC--cCcccccCC-cCChH
Confidence 5566 4689999963 333333333 1343222 3345677776666 799999987 66543
No 48
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=89.56 E-value=0.022 Score=55.34 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=31.0
Q ss_pred eccccccCCccc-ccccccCCccCCCCcc-cccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYF-RMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~-~laRdia~r~n~~~p~-~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+..+|.||...+ .+-...+..+|.+.|. ++.+.+|.. +| +|||||.+| .|.+.|
T Consensus 268 i~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~G--~KMSKS~GN-~v~p~d 323 (524)
T 2x1l_A 268 LHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RG--EKMSKSIGN-VVDPVN 323 (524)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-CS--CSEETTTEE-SSCHHH
T ss_pred EEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-CC--cccCCcCCC-CCCHHH
Confidence 467999997532 2111112223555553 344566554 55 799999986 776643
No 49
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=89.45 E-value=0.035 Score=54.69 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=32.1
Q ss_pred eccccccCCcccc-c--ccccCCccCCCCccc-ccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYFR-M--TRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~~-l--aRdia~r~n~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+...|.||..++. + ++-.+ .|.+.|.. +.+.+| ..+| +|||||.+| .|.+.|
T Consensus 297 v~~~GkDii~FH~~~wpa~L~a--~g~~~~~~v~~hg~v-~~~G--~KMSKS~GN-vV~p~d 352 (564)
T 3kfl_A 297 VHVVGKDILKFHAIYWPAFLMS--AELPLPERLVSHGWW-TKDH--KKISKSLGN-AFDPVE 352 (564)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCE-EETT--EECCTTTTC-CCCHHH
T ss_pred eEEEeecccchHHHHHHHHHHh--CCCCCCcEEEEcccE-eeCC--ccccccCCC-CCCHHH
Confidence 4689999977311 1 22122 25555544 346777 5566 799999987 776543
No 50
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=88.88 E-value=0.043 Score=56.78 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=36.3
Q ss_pred CCCccceeccccccCCcccccccccCCc---cCCCCc--ccccccccccccCCccccccCCCCceeeecc
Q 022694 121 GKDHLRCLIPCAIDQDPYFRMTRDVAPR---IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ~~~~~laRdia~r---~n~~~p--~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+.+| +...|.||... =.+|.++.. +|. .| .++.+.++...+| +|||||.+| .|...|
T Consensus 480 ~P~d---~~v~G~Dii~~-W~a~~~~~~~~~~g~-~Pfk~v~~hG~vld~~G--~KMSKSlGN-vIdP~d 541 (862)
T 1gax_A 480 YPGD---VLVTGYDILFL-WVSRMEVSGYHFMGE-RPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDPLE 541 (862)
T ss_dssp CSBS---CEEEEGGGTTT-THHHHHHHHHHHSSS-CSBSEEEEECCEECTTS--CBCCTTTTC-CCCHHH
T ss_pred CCce---EEecCcccccc-HHHHHHHHHHHhcCC-CcccEEEEeeeEEcCCC--CCccccCCC-CCCHHH
Confidence 4555 46899998753 344444432 232 35 3445778877787 799999987 666543
No 51
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=87.94 E-value=0.051 Score=53.04 Aligned_cols=52 Identities=19% Similarity=0.093 Sum_probs=21.4
Q ss_pred eccccccCCccc-cc--ccccCCccCCCCccc-ccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYF-RM--TRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~-~l--aRdia~r~n~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+...|.||...+ .+ ++-.+ +|.+.|.. +.+.+|. ++| +|||||.+| .|.+.|
T Consensus 279 v~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~G--~KMSKS~GN-vi~p~d 334 (536)
T 4dlp_A 279 AHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NRG--EKMSKSVGN-VIDPFE 334 (536)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHHH
T ss_pred eEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eCC--ceecccCCC-CCCHHH
Confidence 467899998731 11 33222 35555543 3466764 466 799999987 776543
No 52
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=86.99 E-value=0.057 Score=51.10 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=20.2
Q ss_pred eccccccCCc-ccccccccCCcc-CCCCc-ccc-cccccccccCCccccccCCCCceeee
Q 022694 128 LIPCAIDQDP-YFRMTRDVAPRI-GYHKP-ALI-ESSFFPALQGETGKMSASDPNSAIYV 183 (293)
Q Consensus 128 ~vpvG~DQ~~-~~~laRdia~r~-n~~~p-~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L 183 (293)
+.++|.|+.. |++...-...-+ |.+++ .++ ++.+|. ++| +|||||.+| .|.+
T Consensus 247 i~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G--~KMSKS~GN-~v~~ 302 (414)
T 3c8z_A 247 IQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDG--HKMSKSRGN-LVLV 302 (414)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBH
T ss_pred EEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCC--eEcccccCC-cCCH
Confidence 4578999876 655543333222 54333 233 335554 466 799999987 6655
No 53
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=86.89 E-value=0.034 Score=54.28 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=32.0
Q ss_pred cccccCCccc---ccccccC-CccCCCCcccccccccccccCCccccccCCCCceeeecc-----ChHHHHHHhhh
Q 022694 130 PCAIDQDPYF---RMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 196 (293)
Q Consensus 130 pvG~DQ~~~~---~laRdia-~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~i~~KI~k 196 (293)
++|.|+.... ....+++ .-+|.+.|..+++++|.+ .|.++|||||.+| .|.+.| .|+.++--+.+
T Consensus 235 ~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~-~g~g~KmSKs~Gn-~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 235 PAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGI-KGQKGKMSGSKGN-VILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp CEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEE-SCC---------C-CCCHHHHHTTSCHHHHHHHHHS
T ss_pred CCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEe-CCCCCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHh
Confidence 6788876611 1223444 467877787777887765 3223799999986 554432 55555555544
No 54
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=86.61 E-value=0.072 Score=51.20 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=35.8
Q ss_pred eccccccCC-ccccc--ccccCCccCCCCccc-ccccccccccCCccccccCCCCceeeecc-----ChHHHHHHhhh
Q 022694 128 LIPCAIDQD-PYFRM--TRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 196 (293)
Q Consensus 128 ~vpvG~DQ~-~~~~l--aRdia~r~n~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~i~~KI~k 196 (293)
+..+|.|+. +|++. +.-.|- +|.+.|.. +++.+|.. +| +|||||.+| .|.+.| +++.++=-+.+
T Consensus 223 ih~gG~Dl~fpH~~~~~aq~~a~-~g~~~~~~~~h~g~v~~-~G--~KMSKS~GN-~v~~~dll~~~g~dalR~~ll~ 295 (461)
T 1li5_A 223 IHGGGSDLMFPHHENEIAQSTCA-HDGQYVNYWMHSGMVMV-DR--EKMSKSLGN-FFTVRDVLKYYDAETVRYFLMS 295 (461)
T ss_dssp EEECBGGGTTTHHHHHHHHHHHH-SSSCCEEEECCBCCEEE-TT--BCCCGGGTC-CCBHHHHHTTSCHHHHHHHHHS
T ss_pred EEeccCccCchHHHHHHHHHHHh-cCCCCCcEEEEeeEEEE-CC--eEccccCCC-ccChhHHhhhCCHHHHHHHHHc
Confidence 457899976 45322 222211 46554533 45566543 55 799999987 676543 44555443333
No 55
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=86.48 E-value=0.073 Score=54.75 Aligned_cols=53 Identities=23% Similarity=0.138 Sum_probs=30.4
Q ss_pred eccccccCCcccccccccCC--c-cCCCCc-ccccccccccccCCccccccCCCCceeeec
Q 022694 128 LIPCAIDQDPYFRMTRDVAP--R-IGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 184 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRdia~--r-~n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 184 (293)
+..+|.||.... +.+-++. - ++.+++ .++.+.++...+| +|||||.+| .|.+.
T Consensus 547 l~~~G~D~~r~w-~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G--~KMSKS~GN-vV~p~ 603 (821)
T 1ile_A 547 FIAEGIDQTRGW-FNSLHQLGVMLFGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDPW 603 (821)
T ss_dssp BEEEEGGGGGTH-HHHHHHHHHHHHSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCHH
T ss_pred cccchhhhhccH-HHHHHHHHHHhcCCCCcceEEEEeeEECCCC--CCCCccCCC-CCCHH
Confidence 346899996421 1121111 1 133233 3445777777777 799999987 66553
No 56
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=86.44 E-value=0.061 Score=52.38 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=30.5
Q ss_pred eccccccCCccc---ccccccCCccCCCCcccc-cccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDPYF---RMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~---~laRdia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+...|.||..++ ..++-++. |.+.|..+ ++.+| ..+| +|||||.+| .|...|
T Consensus 281 ~~~~G~D~~~fh~~~~~a~l~~~--g~~~~~~v~~hg~l-~~~G--~KMSKSlGN-vi~p~~ 336 (542)
T 3u1f_A 281 VHVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWW-TKDR--KKISKSLGN-VFDPVE 336 (542)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHH--TCCCCSCEEEECCC-EETT--BCCBTTTTB-CCCHHH
T ss_pred EEEecccccccccchhHHHHHhh--cccccceeccccce-ecCC--ceeccccCC-CCChhH
Confidence 457899996643 22333332 55555444 45554 3455 899999987 665433
No 57
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=84.84 E-value=0.077 Score=52.08 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=29.7
Q ss_pred ccccccCCccc-ccccccCCccCCCCcccc-cccccccccCCccccccCCCCceeeecc
Q 022694 129 IPCAIDQDPYF-RMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 129 vpvG~DQ~~~~-~laRdia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
-.+|.||..++ .+=--+...+|++.|..+ .+.+|.. +| +|||||.+| .|.+.|
T Consensus 304 ~~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~-~G--~KMSKS~GN-vv~p~d 358 (560)
T 3h99_A 304 HFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTV-NG--AKMSKSRGT-FIKAST 358 (560)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEE-TT--EECCTTTTC-CCBHHH
T ss_pred EEeccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEe-CC--eeccccCCC-cCCHHH
Confidence 35799988731 111011122455666433 3555543 65 799999987 776543
No 58
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=82.88 E-value=0.15 Score=52.24 Aligned_cols=58 Identities=21% Similarity=0.088 Sum_probs=32.4
Q ss_pred CCCccceeccccccCCc-ccccccccCCc-cCC-CCc-ccccccccccccCCccccccCCCCceeeecc
Q 022694 121 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ~~-~~~laRdia~r-~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+.+| +..+|.||.. |+...+-...- ++. +-| ..+++.+|.. +| +|||||.+| .|.+.|
T Consensus 602 ~p~D---i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~d 663 (810)
T 1wkb_A 602 YPLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFID 663 (810)
T ss_dssp CSCS---EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TT--BCCCTTTTC-CCBHHH
T ss_pred CCce---EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CC--eehhhcCCC-cCCHHH
Confidence 3455 4579999976 53433221111 221 223 3345666553 55 799999987 776543
No 59
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=81.96 E-value=0.38 Score=50.37 Aligned_cols=57 Identities=19% Similarity=0.062 Sum_probs=32.0
Q ss_pred CCCccceeccccccCCc-ccccccccCCc-cCC-CCc-ccccccccccccCCccccccCCCCceeeec
Q 022694 121 GKDHLRCLIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVT 184 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ~~-~~~laRdia~r-~n~-~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~ 184 (293)
+.+| +..+|.||.. |+...+-...- ++. +-| ..+++.+|.. +| +|||||.+| .|...
T Consensus 602 ~P~D---i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G--~KMSKS~GN-vv~p~ 662 (967)
T 1wz2_A 602 YPLD---WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EG--QKMSKSKGN-VLNFI 662 (967)
T ss_dssp CSCS---EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SS--SCCCTTTCC-CCBHH
T ss_pred CCCe---EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CC--EEccccccC-CCCHH
Confidence 4455 4579999965 43332211111 221 223 3445666654 65 799999987 66654
No 60
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=80.37 E-value=0.25 Score=51.24 Aligned_cols=40 Identities=13% Similarity=0.026 Sum_probs=22.5
Q ss_pred CCCccceeccccccC-Cccccccccc---CCc---cCCCCcc--cccccccc
Q 022694 121 GKDHLRCLIPCAIDQ-DPYFRMTRDV---APR---IGYHKPA--LIESSFFP 163 (293)
Q Consensus 121 ~~ad~~~~vpvG~DQ-~~~~~laRdi---a~r---~n~~~p~--~l~~~~lp 163 (293)
+.+| +..+|.|| .-|+-.+|-. +.. +...+|. ++.+.||-
T Consensus 542 ~PvD---~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl 590 (880)
T 4arc_A 542 LPVD---IYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVL 590 (880)
T ss_dssp CSEE---EEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEE
T ss_pred CCce---EeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEe
Confidence 3455 56899999 5577667622 111 2235673 34466763
No 61
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=80.04 E-value=0.31 Score=47.16 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=49.2
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCCceee-ec---cChHHHHHHhhh
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY-VT---DSAKAIKNKINK 196 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~-L~---D~~~~i~~KI~k 196 (293)
|+|.-|.|...+---=.-+.+.||.+.|...|.|+|.+-+| +||||.++..+|. +- -.|+.|..-+..
T Consensus 222 ThViRG~D~l~~tprq~~l~~aLG~~~P~f~HlpLi~~~~g--~KLSKR~g~~sl~~~r~~G~~peal~n~l~~ 293 (490)
T 4g6z_A 222 THVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQG--EKMSKRHGAMSVMGYRDAGYLPEAVLNYLAR 293 (490)
T ss_dssp CEEEEEGGGGGGHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCTTTTCCBHHHHHHTTCCHHHHHHHHHT
T ss_pred CEEEeccccccChHHHHHHHHHcCCCCCeEEEecceeCCCC--CcccCCCCCcCHHHHHHCCCCHHHHHHHHHH
Confidence 57888888766544444455778999999889999999887 7999998643321 11 268888877766
No 62
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=79.79 E-value=0.16 Score=50.30 Aligned_cols=52 Identities=19% Similarity=0.170 Sum_probs=34.2
Q ss_pred cccccCCcccccccccCCccCCCCc--cccc--ccccccccCCccccccCCCCceeeecc
Q 022694 130 PCAIDQDPYFRMTRDVAPRIGYHKP--ALIE--SSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 130 pvG~DQ~~~~~laRdia~r~n~~~p--~~l~--~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
..|.||..|+.-...+++.+|++.+ ...+ +.+|. ++| +|||||.+| .|.+.|
T Consensus 352 V~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~-~~g--~KMSKr~Gn-~v~l~d 407 (592)
T 1iq0_A 352 VVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LEG--RQMSGRKGL-AVSVDE 407 (592)
T ss_dssp EEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ETT--BCSCC-----CCBHHH
T ss_pred EEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEE-cCC--CcccCCCCC-ccCHHH
Confidence 6899999999988888898998542 2223 34553 355 799999986 776644
No 63
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=78.24 E-value=0.37 Score=46.90 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=42.5
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCC
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~ 178 (293)
|+|.-|.|...+--.=+-+.+.||.+.|...|.|+|.+-+| +|+||.+..
T Consensus 231 THViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g--~kLSKR~~~ 280 (512)
T 4gri_A 231 THVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDG--QKLSKRHGS 280 (512)
T ss_dssp SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--SBCCTTTSC
T ss_pred ceeccccccccccHHHHHHHHHcCCCCCeEEecchhccccc--cccCccccc
Confidence 68899999887766666677889999999999999999987 799999763
No 64
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=77.47 E-value=0.15 Score=49.03 Aligned_cols=53 Identities=17% Similarity=0.052 Sum_probs=30.5
Q ss_pred eccccccCCc-ccccccccCCc---cCCCCcccccccccccccCCccccccCCCCceeeecc
Q 022694 128 LIPCAIDQDP-YFRMTRDVAPR---IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~-~~~laRdia~r---~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
+.-+|.|... |++ +++|.. +|.|-+...++..+...+| +|||||.+| .|.+.|
T Consensus 226 ih~gG~Dl~FpHhe--neiaqs~a~~g~p~~~~w~H~g~v~~~G--~KMSKSlGN-~i~~~d 282 (462)
T 3tqo_A 226 IHGGGLDLKFPHHE--NEIAQSEAGEEKPFVKLWMHAGLLEINK--EKMSKSLGN-IISIRE 282 (462)
T ss_dssp EEEEEGGGTTTHHH--HHHHHHHHHHSSCCEEEEEEECCEEETT--EECCTTTTC-CCBHHH
T ss_pred EEccccccccHHHH--hHHHHHHHHcCCCcceEEEEccEEecCC--cCccccCCC-cccHHH
Confidence 4678999665 544 333332 2332233333444445677 799999987 666543
No 65
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=76.99 E-value=0.41 Score=49.64 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=10.9
Q ss_pred cccccCCCCceeeec
Q 022694 170 GKMSASDPNSAIYVT 184 (293)
Q Consensus 170 ~KMSkS~~~s~I~L~ 184 (293)
.|||||.+| .|...
T Consensus 636 ~KMSKSkGN-vVdP~ 649 (878)
T 2v0c_A 636 AVMSKSKGN-GVMVG 649 (878)
T ss_dssp EECSGGGTC-CCBHH
T ss_pred HHhhccCCC-cccHH
Confidence 599999987 66543
No 66
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=73.19 E-value=0.78 Score=43.87 Aligned_cols=24 Identities=8% Similarity=-0.076 Sum_probs=10.7
Q ss_pred cccCCCC--ccceeccccccCCcccc
Q 022694 117 HLFSGKD--HLRCLIPCAIDQDPYFR 140 (293)
Q Consensus 117 Dil~~~a--d~~~~vpvG~DQ~~~~~ 140 (293)
||+.... ..||+||||.||++|.|
T Consensus 223 Dil~~~~d~~~~~~vp~~~d~~~~~~ 248 (451)
T 3foc_A 223 PVYSTYFDGLPFTRVPLPVGTGNEDA 248 (451)
T ss_dssp GGSGGGGTTSGGGCCBCC--------
T ss_pred HHHHhhcCCCCccccccccccccchh
Confidence 6763322 35789999999999954
No 67
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=72.25 E-value=0.42 Score=46.86 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=26.4
Q ss_pred eeccccccCCcccccccccCCccCCCCcccccccccccccCCccccccCCCC
Q 022694 127 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178 (293)
Q Consensus 127 ~~vpvG~DQ~~~~~laRdia~r~n~~~p~~l~~~~lpgL~g~~~KMSkS~~~ 178 (293)
|+|..|.|...+-..=.-+...+|.+.|...|.++| .++| .|||||..+
T Consensus 288 ThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L-~~~g--~KLSKR~~~ 336 (553)
T 3aii_A 288 THVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRL-KMDD--VALSTSGAR 336 (553)
T ss_dssp CEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCB-C---------CHHHH
T ss_pred ceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEE-ecCC--ceechhhhh
Confidence 578889998766444444456678888888888988 5676 799999753
No 68
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=66.90 E-value=0.46 Score=47.40 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=38.5
Q ss_pred eccccccCCcccccccccCCccCCCC-cc---cccccccccccCCccccccCCC--Cceeeecc
Q 022694 128 LIPCAIDQDPYFRMTRDVAPRIGYHK-PA---LIESSFFPALQGETGKMSASDP--NSAIYVTD 185 (293)
Q Consensus 128 ~vpvG~DQ~~~~~laRdia~r~n~~~-p~---~l~~~~lpgL~g~~~KMSkS~~--~s~I~L~D 185 (293)
+-.+|.||..|+.-...++..+|++. +. ++...+|- +.| +|||||.+ | .|.+.|
T Consensus 380 IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~~~--~KMSkr~G~~n-~v~l~d 439 (629)
T 2zue_A 380 INVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-RPE--GKFSGRKGTWV-GFTVDE 439 (629)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-BTT--BCCCTTTTTTT-TCBHHH
T ss_pred EEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-cCC--CcccCCCCCCC-eeeHHH
Confidence 34689999999988888888899854 32 22234543 344 79999998 7 777654
No 69
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=66.36 E-value=0.5 Score=45.80 Aligned_cols=52 Identities=19% Similarity=0.104 Sum_probs=20.0
Q ss_pred eccccccCC-cccccccccCCcc-CCCCc-ccccccccccccCCccccccCCCCceeee
Q 022694 128 LIPCAIDQD-PYFRMTRDVAPRI-GYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 183 (293)
Q Consensus 128 ~vpvG~DQ~-~~~~laRdia~r~-n~~~p-~~l~~~~lpgL~g~~~KMSkS~~~s~I~L 183 (293)
+-.+|.|.. +|++.-.-...-. +.+-+ ..+++.+|. .+| .|||||.+| .|.+
T Consensus 256 IH~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~-~~G--~KMSKSlGN-~it~ 310 (501)
T 3sp1_A 256 IHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLI-MDY--NKMSKSRGN-FITV 310 (501)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEE-CC-------------CCCH
T ss_pred EEeeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEe-eCC--eEccccCCC-cCCH
Confidence 357888864 4554433322222 22222 234556664 466 799999987 5554
No 70
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=66.06 E-value=1.5 Score=44.45 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=26.0
Q ss_pred CCCccc-ccccccccccCCccccccCCCCceeeecc-----ChHHHHHHhhh
Q 022694 151 YHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 196 (293)
Q Consensus 151 ~~~p~~-l~~~~lpgL~g~~~KMSkS~~~s~I~L~D-----~~~~i~~KI~k 196 (293)
.+.|.. +++.+|.. +| +|||||.+| .|+..| .++.++=-+.+
T Consensus 326 ~~~Pk~v~~hG~v~~-~G--~KMSKS~GN-vV~p~d~i~~ygaDalR~~ll~ 373 (722)
T 1rqg_A 326 WNLPYDIPANEYLTL-EG--KKFSTSRNW-AIWVHEFLDVFPADYLRYYLTT 373 (722)
T ss_dssp BCCCSBCCEECCEEE-TT--EECBTTTTB-SCBHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEeeeEEe-CC--eeeeeeCCC-cCCHHHHHHhcCchHHHHHHHh
Confidence 345543 44666654 66 799999987 777543 45555544444
No 71
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=50.72 E-value=1.4 Score=43.78 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=37.4
Q ss_pred cccccCCcccccccccCCccCCCCcccc-cccccccccCCccccccCCCCceeeecc
Q 022694 130 PCAIDQDPYFRMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 185 (293)
Q Consensus 130 pvG~DQ~~~~~laRdia~r~n~~~p~~l-~~~~lpgL~g~~~KMSkS~~~s~I~L~D 185 (293)
.+|.||..|+.-...+++.+|++.+..+ |.++ |+- .||||+.+| .|.|.|
T Consensus 370 V~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~f--g~v---~kMSkR~G~-~v~L~d 420 (607)
T 1f7u_A 370 VIASQQDLHAAQFFEILKQMGFEWAKDLQHVNF--GMV---QGMSTRKGT-VVFLDN 420 (607)
T ss_dssp ECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC--CCE---ESCCGGGTC-CCBHHH
T ss_pred EEcChHhhHHHHHHHHHHHcCCCcCcEEEEecc--ccc---ccccCCCCC-cccHHH
Confidence 6999999999988889999998655333 3444 222 379999986 787765
No 72
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=48.92 E-value=3.2 Score=40.63 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=35.7
Q ss_pred HH-HHhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccc
Q 022694 5 RY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 66 (293)
Q Consensus 5 k~-lQ~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~ 66 (293)
.| +-..+|..+++=|-| |+. .....++...+..++..+|++++.. ++.||+..+
T Consensus 50 n~l~Ar~~gG~fiLRieD----TD~---~R~~~e~~~~I~edL~wLGl~wde~-~~~qSer~~ 104 (553)
T 1qtq_A 50 NFGIAQDYKGQCNLRFDD----TNP---VKEDIEYVESIKNDVEWLGFHWSGN-VRYSSDYFD 104 (553)
T ss_dssp HHHHHHHTTCEEEEEECC----CCG---GGCCHHHHHHHHHHHHHTTCCCSSS-CEEGGGGHH
T ss_pred HHHHHHHcCCEEEEEECC----CCc---hhcCHHHHHHHHHHHHHcCCCCCCC-CeehcccHH
Confidence 45 334578888888888 332 1233456677778888999998543 577887653
No 73
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=25.95 E-value=1.3e+02 Score=19.26 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Q 022694 254 QRLAKVLTELVERHQVARAAVTDE 277 (293)
Q Consensus 254 ~~la~~i~~~l~pir~~~~~~~~~ 277 (293)
..|+..|..+|..++.||+..++.
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~ 28 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQ 28 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899999999999987776
No 74
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=24.12 E-value=11 Score=38.80 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=36.6
Q ss_pred HHH-HhhcCCcEEEEeecccchhhcccChHHHHHHHHhcccchhhcccCCCceeEeecccccc
Q 022694 5 RYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 66 (293)
Q Consensus 5 k~l-Q~~~g~~~~I~iaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~Gldp~k~~i~~qs~~~~ 66 (293)
.|+ -..+|..+++=|-| |+.. ....++...+..++..+|++++. .++.||+..+
T Consensus 90 n~l~Ar~~gG~fiLRIED----TD~~---R~~~e~~~~IledL~wLGl~wde-~~~~qSer~d 144 (851)
T 2hz7_A 90 DFNTARQYGGQFNLRMDD----TNPE---LARQEYVDSIADDLKWLGLDWGE-HFYYASDYFD 144 (851)
T ss_dssp HHHHHHHTTCEEEEEECC----CCTT---TCCHHHHHHHHHHHHHHTCCCTT-CEEEGGGGHH
T ss_pred HHHHHHHcCCEEEEEECc----CCcc---cccHHHHHHHHHHHHHcCCCCCC-CcccHhhhHH
Confidence 453 34578888888888 4321 22446677778888899999864 3678887753
Done!