RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022694
(293 letters)
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 352 bits (905), Expect = e-120
Identities = 178/291 (61%), Positives = 226/291 (77%), Gaps = 2/291 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD D
Sbjct: 180 TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLD 239
Query: 64 YVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
Y+G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F
Sbjct: 240 YMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRD 299
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I
Sbjct: 300 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 359
Query: 182 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+
Sbjct: 360 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 419
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 292
Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 420 YTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAAAL 470
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 351 bits (901), Expect = e-120
Identities = 179/291 (61%), Positives = 227/291 (78%), Gaps = 2/291 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD D
Sbjct: 133 TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLD 192
Query: 64 YVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
Y+G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F
Sbjct: 193 YMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRD 252
Query: 122 KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 181
+ ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I
Sbjct: 253 RTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 312
Query: 182 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKE 241
++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+
Sbjct: 313 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 372
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 292
Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L F
Sbjct: 373 YTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 344 bits (883), Expect = e-118
Identities = 150/286 (52%), Positives = 200/286 (69%), Gaps = 1/286 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
++LQ+ F VPLVI+LTDDEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD
Sbjct: 127 TKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDL 186
Query: 63 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 122
Y+GGAFY+ +V+V++ +T + +FGF D IGK F +Q +FPSSFP++
Sbjct: 187 QYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLP 246
Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
D CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI+
Sbjct: 247 DKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIF 306
Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
+TD+ K I+ KINKYAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y
Sbjct: 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKY 366
Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
+G +L+GE+K+ + L E V+ Q RA V +E +D FM L
Sbjct: 367 KSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 341 bits (876), Expect = e-117
Identities = 107/287 (37%), Positives = 166/287 (57%), Gaps = 15/287 (5%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
++LQ+ F V L IQ+TDDEK ++K NL+ ++++R A +N DIIA GFD KTFIF +
Sbjct: 97 TKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNS 156
Query: 63 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 122
++ Y+ + +AK + ++ +FGFT + IG + FP +Q P+F
Sbjct: 157 EFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFFERKR------ 208
Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
CLIP AIDQDPY+R+ RD A +GY+K A + S F P+L +GKMSAS P +AIY
Sbjct: 209 ----CLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIY 264
Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKE 241
+TDS + ++ K+ K+ +GG+ +++ R+ G E + K+L FF EDD +L+
Sbjct: 265 LTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYA 324
Query: 242 YGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
G + GE K+ L + E ++ HQ R +++V+ F L
Sbjct: 325 CKNGELTCGECKRYLISKIQEFLKEHQ-RRRKKAEKLVEKFKYTGKL 370
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 335 bits (861), Expect = e-115
Identities = 148/284 (52%), Positives = 204/284 (71%), Gaps = 2/284 (0%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
+YLQD FKVPLVIQLTDDEK ++K+ L++EE+ A EN KDIIACGFD TFIF++
Sbjct: 99 TKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNL 158
Query: 63 DYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 122
+Y+ Y +++++ K ++ +++ IFGF ++GK +FP VQA P+F SSFPH+F G+
Sbjct: 159 EYIA-ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGR 217
Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
+ CL+P AIDQDPYFRM RDVAPR+GY KP+ I S F P+LQG KMSAS NS+I+
Sbjct: 218 TDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIF 277
Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
V D+ ++I+NKI KYAFSGGQ + E R+LGANL+VD+ +YL F +EDD +LE I K+Y
Sbjct: 278 VNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKY 337
Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 286
+G ML+GE+K L + L +L + HQ R A+ D+++ F
Sbjct: 338 SSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKS 381
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 323 bits (830), Expect = e-110
Identities = 122/285 (42%), Positives = 186/285 (65%), Gaps = 4/285 (1%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
+Y+QDAFK+ LVIQ+TDDEK +WK++ +E++ REN KDI+ GFD T+IFS+ +
Sbjct: 126 CKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVE 185
Query: 64 YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 123
F +N++K++K + N+ + +FGF +IG+V FP + P F SSF + G
Sbjct: 186 A-SHHFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA- 243
Query: 124 HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 183
CL+P A+DQDP+FR+ RD A +G KP+ I S P L+G KMSASDPNS+IY+
Sbjct: 244 --MCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYL 301
Query: 184 TDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYG 243
D+ I+ KI YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE + Y
Sbjct: 302 DDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYI 361
Query: 244 AGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
G + + E+K++ V+ E V R+Q +R VTD+ + AF+ +
Sbjct: 362 KGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 318 bits (817), Expect = e-108
Identities = 149/286 (52%), Positives = 203/286 (70%), Gaps = 3/286 (1%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
++LQD+F+VPLVIQ+TDDEK ++N+ +E+ + + EN KDIIA GFD TFIF DFD
Sbjct: 103 TKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFD 162
Query: 64 YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS-GK 122
Y+G Y+ + K+ + T ++V G FGF ED+ G+ FP +QA PSF ++FPH+F
Sbjct: 163 YMG-CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSM 221
Query: 123 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
++ CLIP AIDQDPYFR+TRD+APR+GY KPA+I S FFP L G GKMS+S A+
Sbjct: 222 GNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGT-AVL 280
Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
+TD+ K +K+KINK+AFSGG + + H LGAN+EVD+P+++LSFFLEDD EL +KKEY
Sbjct: 281 LTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEY 340
Query: 243 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
G ++TGEVK+ L +T + + HQ R VTDE V F + R +
Sbjct: 341 MLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIM 386
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 316 bits (810), Expect = e-107
Identities = 84/285 (29%), Positives = 159/285 (55%), Gaps = 4/285 (1%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 63
RYLQDAF + ++IQ+ DD K + + ++ E+ +++ + K I+A GF+ KTFI++D+
Sbjct: 106 ARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQ 165
Query: 64 YVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 123
Y G Y+ + V K YN V F F D+IGK++ P + F S+ H FS
Sbjct: 166 YFG-KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP- 223
Query: 124 HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 183
RCL+ +I + + +A + + +P ++ P L G K +++I +
Sbjct: 224 -ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILL 281
Query: 184 TDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYG 243
+D+AK ++ KINK AFSGG+ + E H+KLG ++D+ + L+ F D+A+++ ++++Y
Sbjct: 282 SDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYS 341
Query: 244 AGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
G +L+GE+K+ ++ + + + + + +T + A+++
Sbjct: 342 KGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTKF 386
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 285 bits (730), Expect = 2e-94
Identities = 134/335 (40%), Positives = 184/335 (54%), Gaps = 50/335 (14%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 62
+YLQDAFK +VIQ+TDDEK + ++LS E REN KDIIACGFD KTFIF +
Sbjct: 116 TKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINS 175
Query: 63 DYVG-GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSG 121
Y+ Y+ V + + +++ FGF+ + ++G +FPP Q +P + + F L
Sbjct: 176 QYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFT 235
Query: 122 KDH------------------------------------------------LRCLIPCAI 133
+ CLI I
Sbjct: 236 RVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGI 295
Query: 134 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 193
+QDPYFR+ RD+APR+G+ K A + F P LQG KMSASDPNSAIY+TD+ IKNK
Sbjct: 296 EQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKNK 355
Query: 194 INKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVK 253
IN+YAFSGG+++ E HR GA+L VD+ V+YL F++DDAELE +K +Y G +LTGEVK
Sbjct: 356 INRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVK 415
Query: 254 QRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
L +L L++ H R V M+++F + L
Sbjct: 416 ATLIGILQGLIKEHAERRDKVDTTMIESFTVKKEL 450
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 228 bits (582), Expect = 3e-73
Identities = 52/293 (17%), Positives = 107/293 (36%), Gaps = 25/293 (8%)
Query: 4 NRYLQDAFKVPLVIQLTDDEKCM--WKNLSVEESQRLARENAKDIIACGFDVTKTFIF-- 59
N ++I + D M N + + + L R + ACG ++ T
Sbjct: 64 NTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWA 123
Query: 60 SDFDYVGGAFYKNMVKVAKCVTYNKV---VGIFGFTGEDHI--GKVSFPPVQAVPSFPSS 114
S+F ++ + M+ +A+ T ++V I G D + ++ +P +QA F
Sbjct: 124 SEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFELV 183
Query: 115 FPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 174
+ IDQ + + A G P + +L G KMS
Sbjct: 184 PEG--------IDICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSK 235
Query: 175 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAE 234
SDP AI++ D+ + + KI++ + + + L+ + +
Sbjct: 236 SDPQGAIFMDDTEQEVSEKISRAYCTDETF--DNPIFEYIKYLLLRWFGTLNLCGKIYTD 293
Query: 235 LEHIKKEYGAGGMLTGEVKQRLAKVLTELV----ERHQVARAAVTDEMVDAFM 283
+E I++++ M E+K +A + ++ E + + V ++
Sbjct: 294 IESIQEDF--SSMNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQ 344
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 102 bits (256), Expect = 2e-25
Identities = 47/263 (17%), Positives = 99/263 (37%), Gaps = 32/263 (12%)
Query: 19 LTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMV-K 75
+++ M +L ++ +++ + +CG ++ S+ Y ++V
Sbjct: 101 HLNNK--MSGDL--KKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLD 156
Query: 76 VAKCVTYNKVVGIFGFTG-----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LI 129
+++ N++ G E++ ++ +P +Q F L +
Sbjct: 157 ISRSFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCADIF------------FLNVDIC 204
Query: 130 PCAIDQDPYFRMTRDVAPRIGYHKPALIES-SFFPALQGETGKMSASDPNSAIYVTDSAK 188
IDQ + R+ K +I S P L KMS SD NSAI++ DS
Sbjct: 205 QLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSES 264
Query: 189 AIKNKINK-YAFSGGQE-----SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEY 242
+ KI K Y E + + E ++ K + + L+ ++ +Y
Sbjct: 265 DVNRKIKKAYCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDY 324
Query: 243 GAGGMLTGEVKQRLAKVLTELVE 265
G + ++K +A + +L++
Sbjct: 325 VNGFIHPLDLKDNVAMYINKLLQ 347
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 100 bits (251), Expect = 2e-24
Identities = 58/317 (18%), Positives = 105/317 (33%), Gaps = 52/317 (16%)
Query: 5 RYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDII--------ACGFDVTK 55
A +V + L D + + E + AK + + K
Sbjct: 64 ADFLKAGCEV--TVLLADLHAFLDNMKAPLE---VVNYRAKYYELTIKAILRSINVPIEK 118
Query: 56 T-FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPS 110
F+ + + ++ +++ V+ N + + +P +QA+
Sbjct: 119 LKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQALDE 178
Query: 111 FPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGET 169
L +DQ F + + P +GY K A + + P L
Sbjct: 179 Q------------FLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQG- 225
Query: 170 GKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ-------ESVELHRKLGANLEVDIPV 222
GKMSASDPNS I + + K +K KIN S G V+ + E+
Sbjct: 226 GKMSASDPNSKIDLLEEPKQVKKKINSAFCSPGNVEENGLLSFVQYV--IAPIQELKFGT 283
Query: 223 KYLSFFLEDD---------AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 273
+ FF++ E +K + + ++K +A + EL+E + A
Sbjct: 284 NHFEFFIDRPEKFGGPITYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFAN 343
Query: 274 VTDEMVDAFMAVRPLPN 290
E +A P+
Sbjct: 344 -NKEFQEASEKGYPVAT 359
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 96.5 bits (240), Expect = 1e-22
Identities = 47/265 (17%), Positives = 95/265 (35%), Gaps = 40/265 (15%)
Query: 26 MWKNLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDFDYVGGAFY-KNMVKVAKCVTY 82
+ L E+ + + R + A G D+ K F++ S+ Y + ++ + + T
Sbjct: 90 VGGEL--EKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTI 147
Query: 83 NKV---VGIFGFTGEDH-IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDP 137
++ I G T +V +P +Q F L+ + +DQ
Sbjct: 148 ARIKKCCTIMGKTEGTLTAAQVLYPLMQCCDIF------------FLKADICQLGLDQRK 195
Query: 138 YFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 196
+ R+ IG KP ++ L+ KMS SDP+SAI++ D+ + + KI +
Sbjct: 196 VNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ 255
Query: 197 YAF-------SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL---------EHIKK 240
A+ + V + + + A E +++
Sbjct: 256 -AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQ 314
Query: 241 EYGAGGMLTGEVKQRLAKVLTELVE 265
+ + + +K L + L+E
Sbjct: 315 AFVSDEVSEDALKSCLIDEVNALLE 339
Score = 89.5 bits (222), Expect = 3e-20
Identities = 31/242 (12%), Positives = 73/242 (30%), Gaps = 26/242 (10%)
Query: 33 EESQRLARENAKDIIACGFDVTKTFIF-SDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFG 90
++ + N + A G + + ++ + V +A+ + V ++G
Sbjct: 438 KDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG 497
Query: 91 FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 150
+ G+V ++ L H + R+
Sbjct: 498 GEVRN-AGQVIAALMRVAT-------ALMLSVSH----VISTSLDGHINAFAREYTKERI 545
Query: 151 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQES----V 206
PAL + + +Y+ D+ I+ KI K A+S E +
Sbjct: 546 --DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNEEANPVI 602
Query: 207 ELHRKL---GANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 263
+ + L L ++ E + + G+G + ++K + ++L +
Sbjct: 603 SVAQHLLAQHGALSIERGEANGGNV--SYNTPEALVADCGSGALHPADLKAAVLQLLLDR 660
Query: 264 VE 265
Sbjct: 661 SA 662
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 86.8 bits (215), Expect = 1e-19
Identities = 54/290 (18%), Positives = 101/290 (34%), Gaps = 59/290 (20%)
Query: 19 LTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMVKV 76
+ D + + + K I G D K S+ G +++ ++ +
Sbjct: 79 INDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEI-LEKGDYWQTVIDI 137
Query: 77 AKCVTYNKVVGIF-----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIP 130
+K VT ++V+ K+ +P +Q F + +
Sbjct: 138 SKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIF------------YQGVTIAH 185
Query: 131 CAIDQDPYFRMTRDVAPRIGYH---------KPALIESSFFPALQGE------------- 168
+DQ + +VA ++ YH KP + LQ
Sbjct: 186 AGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKE 245
Query: 169 ---TGKMSASDPNSAIYVTDSAKAIKNKINKYAF--------SGGQESVE--LHRKLGAN 215
KMS S P SA+++ DS + I+ K+ K AF + + VE + R+
Sbjct: 246 IKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAREVRYNPVLDWVEYIIFREEPTE 304
Query: 216 LEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 265
V P K+ E +K+++ G + ++K +A+ L L+E
Sbjct: 305 FTVHRPAKFGG--DVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLE 352
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 79.0 bits (195), Expect = 6e-17
Identities = 59/267 (22%), Positives = 101/267 (37%), Gaps = 46/267 (17%)
Query: 31 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GGAFYKNMVKVAKCVTYNKV---- 85
++ + AR + + A G V + + ++ +++VAK + +V
Sbjct: 87 DMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRAL 146
Query: 86 --VGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMT 142
+G E K+ +P +Q F ++ I +DQ +
Sbjct: 147 TIMGRRAEEAEVDASKLIYPLMQVSDIF------------YMDLDIALGGMDQRKAHMLA 194
Query: 143 RDVAPRIGYHKPALIESSFFPALQG---------------ETGKMSASDPNSAIYVTDSA 187
RDVA ++G KP I + +LQG KMS S P +A++V DS
Sbjct: 195 RDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDSD 254
Query: 188 KAIKNKINKYAFSGGQ-------ESVELH--RKLGANLEVDIPVKYLSFFLEDDAELEHI 238
I+ KI K Q E + G L VD P KY + E +
Sbjct: 255 DDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGP--VEYTSYEEL 312
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVE 265
+++Y G + ++K +A+ L E+V
Sbjct: 313 ERDYTDGRLHPLDLKNAVAESLIEVVR 339
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 72.6 bits (179), Expect = 8e-15
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 16/141 (11%)
Query: 134 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 185
DQ P TR++ R + L P L G KMS S N AI + D
Sbjct: 171 DQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGD 228
Query: 186 SAKAIKNKINK-YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 244
SA + K+ Y G + + R G + +L F D A ++ +K +Y A
Sbjct: 229 SADEVARKVMGMYTDPGHLRASDPGRVEGNPV-----FTFLDAFDPDPARVQALKDQYRA 283
Query: 245 GGMLTGEVKQRLAKVLTELVE 265
GG+ +VK+ L VL ++
Sbjct: 284 GGLGDVKVKKHLIDVLNGVLA 304
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 68.7 bits (169), Expect = 2e-13
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 15/140 (10%)
Query: 134 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 185
DQ + +TR++A R Y + L P G KMS S N I +
Sbjct: 162 DQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGR--KMSKSYGN-IINLEI 218
Query: 186 SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAG 245
S K ++ I + + + + R N E KY F + E + + +
Sbjct: 219 SEKELEQTILR-MMT---DPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTA 274
Query: 246 GMLTGEVKQRLAKVLTELVE 265
+ + K+ L K + +
Sbjct: 275 SIGCVDCKKLLLKNMKRKLA 294
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 68.3 bits (167), Expect = 3e-13
Identities = 43/250 (17%), Positives = 86/250 (34%), Gaps = 31/250 (12%)
Query: 32 VEESQRLARENAKDII-ACGFDVTKTFIFSDFDYVGGAFY-KNMVKVAKCVTYNKVVGIF 89
+E K ++ + G + K DY Y ++ +++ VT +
Sbjct: 90 LELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAG 149
Query: 90 GF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMTRD 144
+ + +P +QA+ +L+ IDQ F
Sbjct: 150 AEVVKQVEHPLLSGLLYPGLQALDEE------------YLKVDAQFGGIDQRKIFTFAEK 197
Query: 145 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 204
P +GY K + + P L G KMS+S+ S I + D + +K K+ K G
Sbjct: 198 YLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNV 255
Query: 205 S-------VELH-RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRL 256
++ L + + K+ ++K++ A + G++K +
Sbjct: 256 ENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTA--YVDLEKDFAAEVVHPGDLKNSV 313
Query: 257 AKVLTELVER 266
L +L++
Sbjct: 314 EVALNKLLDP 323
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 63.5 bits (155), Expect = 9e-12
Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 37/250 (14%)
Query: 33 EESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFY-KNMVKVAKCVTYNKVVGIFG 90
EE +A N K IA G D ++ F+ +Y Y +++K+A+ T N+
Sbjct: 84 EEIAEVADYNKKVFIALGLDESRAKFVLGS-EYQLSRDYVLDVLKMARITTLNRARRSMD 142
Query: 91 FTG----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMTRDV 145
+ + ++ +P +QA+ HL + IDQ + R+
Sbjct: 143 EVSRRKEDPMVSQMIYPLMQALDIA------------HLGVDLAVGGIDQRKIHMLAREN 190
Query: 146 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ-- 203
PR+GY P + + L G KMS+S + I V D + ++ KI K G
Sbjct: 191 LPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPPEEVERKIRKAYCPAGVVE 247
Query: 204 --------ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQR 255
+ L R + V+ K+ + A E + +++ +G + ++K
Sbjct: 248 ENPILDIAKYHILPRF--GKIVVERDAKFGGDV--EYASFEELAEDFKSGQLHPLDLKIA 303
Query: 256 LAKVLTELVE 265
+AK L L+E
Sbjct: 304 VAKYLNMLLE 313
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 61.4 bits (150), Expect = 5e-11
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 134 DQDPYFRMTRDVAPRIGYH------KP-ALIESSF--FPALQGETGKMSASDPNSAIYVT 184
DQ + +TR++A R + +P AL+ P + G KMS S N I +
Sbjct: 150 DQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLL 207
Query: 185 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 244
+ ++I KI + + + E I YLS+F +E +K+EY
Sbjct: 208 EPEESIWQKIQH-LPD---DPQRIRLSDPGDPERTILFTYLSYF-APKDLVEALKEEYRK 262
Query: 245 GGMLTGEVKQRLAKVLTELVE 265
G+ T VK+ L L E +
Sbjct: 263 AGVGTYVVKRILFDHLMEALR 283
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 56.9 bits (138), Expect = 1e-09
Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 34/244 (13%)
Query: 33 EESQRLARENAKDIIACGFDVTKTFI-FSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF 91
+E +++ N K A G ++ S+F + N+ ++A T +
Sbjct: 80 DEIRKIGDYNKKVFEAMGLK--AKYVYGSEFQL-DKDYTLNVYRLALKTTLKRARRSMEL 136
Query: 92 TG----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDPYFRMTRDVA 146
+ +V +P +Q S +L + ++Q + R++
Sbjct: 137 IAREDENPKVAEVIYPIMQVNTSH------------YLGVDVAVGGMEQRKIHMLARELL 184
Query: 147 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK-YAFSGGQES 205
P+ K I + L GE GKMS+S N I V DS + I+ KI K Y +G E
Sbjct: 185 PK----KVVCIHNPVLTGLDGE-GKMSSSKGN-FIAVDDSPEEIRAKIKKAYCPAGVVEG 238
Query: 206 --VELHRK--LGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 261
+ K L L + P K+ E ++ + + +K +A+ L
Sbjct: 239 NPIMEIAKYFLEYPLTIKRPEKFGGD--LTVNSYEELESLFKNKELHPMYLKNAVAEELI 296
Query: 262 ELVE 265
+++E
Sbjct: 297 KILE 300
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 51.4 bits (124), Expect = 1e-07
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 19/141 (13%)
Query: 134 DQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPNSAIYVT 184
DQ + + RD+A ++ P A + E + G KMS S N I +
Sbjct: 148 DQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGA--KMSKSYQN-TIDIF 204
Query: 185 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 244
S K +K +I+ + + N+ K FL D++ + ++ Y
Sbjct: 205 SSEKTLKKQISS-IVTDSTALEDPKDHENCNI-----FKIAKLFL-DESGQKELQIRYEK 257
Query: 245 GGMLTGEVKQRLAKVLTELVE 265
GG G K L +++ +
Sbjct: 258 GGEGYGHFKIYLNELVNAYFK 278
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 1e-06
Identities = 57/324 (17%), Positives = 99/324 (30%), Gaps = 102/324 (31%)
Query: 2 FTNRYLQD----AFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDII---------- 47
F N YL+ A L L +++ + K + ++ AR AK
Sbjct: 91 FENCYLEGNDIHALAAKL---LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 48 ACGFDVTKTF-IFSDFDYVGG-----AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVS 101
A G + IF GG +++ + + + TY+ +VG + + ++
Sbjct: 148 AVGEGNAQLVAIF------GGQGNTDDYFEELRDLYQ--TYHVLVGDLIKFSAETLSELI 199
Query: 102 FPPVQAVPSFPSSF--------PHLFSGKDHLRCLIPCAIDQDP---------YFRMTRD 144
+ A F P KD+L IP + P Y +
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-LSIPISC---PLIGVIQLAHYVVTAK- 254
Query: 145 VAPRIGYHKPALIESSFFPALQGETGK---------MSASDPNSAIYVTDSAKAIKNKIN 195
+G+ P L+G TG ++ +D + + KAI
Sbjct: 255 ---LLGFT-PG----ELRSYLKGATGHSQGLVTAVAIAETDSWESFF-VSVRKAI----- 300
Query: 196 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGG---ML--TG 250
F G E + P L + +D+ E G ML +
Sbjct: 301 TVLFFIGVRCYEAY-----------PNTSLPPSILEDSL------ENNEGVPSPMLSISN 343
Query: 251 ----EVKQRLAKVLTELVERHQVA 270
+V+ + K + L QV
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVE 367
Score = 45.4 bits (107), Expect = 2e-05
Identities = 36/195 (18%), Positives = 64/195 (32%), Gaps = 58/195 (29%)
Query: 86 VGIF-GFTG----EDHIGKVSFPPV--QAVPSFPSSFPHLFSGKD-HLRCLIPCAIDQDP 137
VG F G+ +G F V + F + + G D H L
Sbjct: 61 VGKFLGYVSSLVEPSKVG--QFDQVLNLCLTEFENCY---LEGNDIH--ALA-------- 105
Query: 138 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKY 197
++ ++ + K LI++ + A + NSA++ + ++
Sbjct: 106 -AKLLQENDTTLVKTK-ELIKN-YITARI-MAKRPFDKKSNSALF--RAVGEGNAQL--V 157
Query: 198 A-FSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRL 256
A F GGQ G + Y EL + + Y L G++ +
Sbjct: 158 AIF-GGQ---------GNTDD------YFE-------ELRDLYQTYHV---LVGDLIKFS 191
Query: 257 AKVLTELVERHQVAR 271
A+ L+EL+ A
Sbjct: 192 AETLSELIRTTLDAE 206
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 48.0 bits (115), Expect = 1e-06
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 165 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEV 218
LQ T KMS SD N + I + + K++ KI + + ++ +K G NL +
Sbjct: 201 LQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNL-L 259
Query: 219 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 265
DI LS + ++ ++ G + G +K +A ++ ++
Sbjct: 260 DI----LSGV--TGQSIPELEAQF--TGQMYGHLKGAVADAVSGMLS 298
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 47.6 bits (114), Expect = 2e-06
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 30/158 (18%)
Query: 128 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP--------------ALQGETGKMS 173
+P DQ + + RD+A R ++ E F +LQ T KMS
Sbjct: 146 QVPVGSDQKQHLELARDIATR--FNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMS 203
Query: 174 ASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEVDIPVKYLSF 227
SD N + I + + K+I KINK A + + + ++ K G NL + + S
Sbjct: 204 KSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVENKAGIANL-MGL----YSA 258
Query: 228 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 265
I+ +Y AG + G K+ + + + ++E
Sbjct: 259 A--TGKTFAEIEAQY-AGVEMYGPFKKDVGEAVVAMLE 293
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 47.7 bits (114), Expect = 2e-06
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 165 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 219
L KMS SDPN + I + D K ++ KI A S G + K G NL +
Sbjct: 220 LNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVKFDKENKPGVSNL-LT 277
Query: 220 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 265
I S + +E ++ +Y G GE K LA+V+ ++
Sbjct: 278 I----YSIL--GNTTIEELEAKY--EGKGYGEFKGDLAEVVVNALK 315
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 47.1 bits (113), Expect = 2e-06
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 165 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 219
L T KMS SDPN + I + D AK I+ KI A S G + K G NL ++
Sbjct: 186 LVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIRYDKEAKPGISNL-LN 243
Query: 220 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 265
I S +E ++++Y G G K LA+V+ E +
Sbjct: 244 I----YSTL--SGQSIEELERQY--EGKGYGVFKADLAQVVIETLR 281
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 46.1 bits (110), Expect = 6e-06
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 20/113 (17%)
Query: 165 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 219
L T KMS S N IY+ D + + KI + A S + + G N+ +
Sbjct: 196 LFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIRFASKTQPGVTNM-LT 253
Query: 220 IPVKYLSFF-------LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 265
I L + ++ + ++K L + L+
Sbjct: 254 I----LKALLKEPVNQSLTNQLGNDLEAYF--STKSYLDLKNALTEATVNLLV 300
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.004
Identities = 42/317 (13%), Positives = 89/317 (28%), Gaps = 85/317 (26%)
Query: 38 LARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF-------- 89
+A + + V F F+ + + C + V+ +
Sbjct: 166 VALDVCLS-----YKVQCKMDF-------KIFW---LNLKNCNSPETVLEMLQKLLYQID 210
Query: 90 --GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAID--QDP----YF-- 139
+ DH S + S + L K + CL+ + Q+ F
Sbjct: 211 PNWTSRSDH----SSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNL 264
Query: 140 --RM---TRD--VAPRIG---YHKPALIESS--FFP----ALQGETGKMSASD-PNSAI- 181
++ TR V + +L S P +L + D P +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 182 -----------YVTDSAKAIKN--KINKYAFSGGQE-SVE-----LHRKLGANL-----E 217
+ D N +N + E S+ +RK+ L
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 218 VDIPVKYLSFFLEDD--AELEHIKKEYGAGGMLTGEVKQRLAKV--LTELVERHQVARAA 273
IP LS D +++ + + ++ + K+ + + ++ A
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 274 VTDEMVDAFMAVRPLPN 290
+ +VD + + +
Sbjct: 445 LHRSIVDHYNIPKTFDS 461
Score = 34.4 bits (78), Expect = 0.046
Identities = 29/279 (10%), Positives = 65/279 (23%), Gaps = 107/279 (38%)
Query: 14 PLVIQL----TDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAF 69
P + + D W N + + + II +V + +
Sbjct: 327 PRRLSIIAESIRDGLATWDNW-----KHVNCDKLTTIIESSLNVLEPAEYRKM------- 374
Query: 70 YKNMVKVAKCVTYNKVVGIFGFTGED-HIGKVSFPPVQAVPSF----PSSFPHLFSGKDH 124
+ + +F HI P + S + K H
Sbjct: 375 FDRLS-------------VFP---PSAHI------PTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 125 LRCLIPCAIDQDP----------YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 174
L+ ++ P Y + + H+ ++++ P
Sbjct: 413 KYSLV----EKQPKESTISIPSIYLELKVKLENEYALHR-SIVDHYNIP---------KT 458
Query: 175 SDPNSAIYVTDSAKAIKNKINKYAFS---------GGQESVELHRKL------------- 212
D + I +++Y +S E + L R +
Sbjct: 459 FDSD---------DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 213 -GANLEVDIPV--------KYLSFFLEDDAELEHIKKEY 242
+ Y + ++D + E +
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.53
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 13/37 (35%)
Query: 171 KMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVE 207
K+ AS +Y DSA A+ I A ++E
Sbjct: 24 KLQAS---LKLYADDSAPAL--AIK--A------TME 47
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 28.9 bits (65), Expect = 1.5
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 175 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGAN 215
+ I+ + I + A + E++E R GA+
Sbjct: 80 ESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGAD 120
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel, TIM barrel,
oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP:
c.1.16.3
Length = 349
Score = 28.1 bits (63), Expect = 3.5
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 256 LAKVLTELV--ERHQVARAAVTDEMVDAFMAV 285
A+ + E + A V ++M++AF
Sbjct: 270 KAEQIAEAIGKGDFGTAIGLVDEDMIEAFSIA 301
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour
suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Length = 104
Score = 26.4 bits (58), Expect = 4.9
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 230 EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH 267
E A L+ I++ Y G+ K +LA E+V++H
Sbjct: 59 EKLALLKQIQEAY-GKCKEFGDDKVQLAMQTYEMVDKH 95
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad,
strand-helix MO hydrolase; 1.20A {Salmonella
typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Length = 229
Score = 27.4 bits (60), Expect = 5.0
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 15/163 (9%)
Query: 52 DVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK-----VSFPPVQ 106
D ++ VGG ++K ++ + G +IG ++ P ++
Sbjct: 72 DPLAAIEKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTIR 131
Query: 107 AVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQ 166
P P+ F D L P I+ P+F + + + E +
Sbjct: 132 TTNDMPIVDPNGFDALD----LFPLQIN--PHFTNALPEGHKGETREQRIRELL----VV 181
Query: 167 GETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELH 209
+ + I V++ + + F G+E+V L
Sbjct: 182 APELTVIGLPEGNWIQVSNGQAVLGGPNTTWVFKAGEEAVALE 224
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.1.16.3
Length = 321
Score = 27.3 bits (61), Expect = 5.8
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 16/82 (19%)
Query: 217 EVDIPVKYLSFFLEDDAE--LEHIKKE--YGAGGM---------LTGEVKQRLAKVLTEL 263
++D+ Y +++DA K + A G L + ++ ++L +
Sbjct: 198 DIDVAA-YTCCSIDEDAAAAANAAKIVVAFIAAGSPPPVFERHGLPADTGKKFGELLGK- 255
Query: 264 VERHQVARAAVTDEMVDAFMAV 285
A AV D +++AF V
Sbjct: 256 -GDFGGAIGAVDDALMEAFSVV 276
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport,
complex IV, proton pumps, membrane prote; HET: TPO HEA
CHD PEK PGV DMU; 1.95A {Bos taurus}
Length = 169
Score = 26.9 bits (59), Expect = 5.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 14 PLVIQLTDDEKCMWKNLSVEE 34
L + EK W +LS++E
Sbjct: 57 ASQKALKEKEKASWSSLSIDE 77
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)-
methylenetetrahydromethanopterin reductase; (alpha,
beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A
{Methanosarcina barkeri}
Length = 327
Score = 26.9 bits (60), Expect = 7.0
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 265 ERHQVARAAVTDEMVDAFMAV 285
+ + VT +M++AF
Sbjct: 262 DFGALMGGLVTPQMIEAFSIC 282
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET:
FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos
taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D*
1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D*
2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D*
3abm_D* 3ag1_D* 3ag2_D* ...
Length = 147
Score = 26.4 bits (58), Expect = 7.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 14 PLVIQLTDDEKCMWKNLSVEE 34
L + EK W +LS++E
Sbjct: 35 ASQKALKEKEKASWSSLSIDE 55
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair,
HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2
PDB: 1h7u_A* 1ea6_A*
Length = 365
Score = 26.8 bits (60), Expect = 8.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 250 GEVKQRLAKVLTELVE 265
G+V L+ + ELVE
Sbjct: 29 GQVVLSLSTAVKELVE 44
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA
damage, nucleus, phosphop DNA binding protein, protein
binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Length = 367
Score = 26.8 bits (60), Expect = 8.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 250 GEVKQRLAKVLTELVE 265
G+V L + ELV+
Sbjct: 20 GQVITDLTTAVKELVD 35
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
biosynthesis, condensatio domain, peptide bond
formation, ligase; 1.85A {Brevibacillus brevis}
Length = 520
Score = 26.7 bits (60), Expect = 9.2
Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 248 LTGEV-KQRLAKVLTELVERHQVAR 271
+ G++ + R+ L+ RH+ R
Sbjct: 127 IEGKLERTRVEAAFQRLIARHESLR 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.407
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,591,947
Number of extensions: 283154
Number of successful extensions: 892
Number of sequences better than 10.0: 1
Number of HSP's gapped: 826
Number of HSP's successfully gapped: 50
Length of query: 293
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 200
Effective length of database: 4,105,140
Effective search space: 821028000
Effective search space used: 821028000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)