RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022694
(293 letters)
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 221 bits (565), Expect = 6e-71
Identities = 178/290 (61%), Positives = 226/290 (77%), Gaps = 2/290 (0%)
Query: 1 MFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 60
++LQD F VPLVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFS
Sbjct: 96 FIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFS 155
Query: 61 DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHL 118
D DY+G FYKN+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +
Sbjct: 156 DLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQI 215
Query: 119 FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
F + ++CLIPCAIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPN
Sbjct: 216 FRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPN 275
Query: 179 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHI 238
S+I++TD+AK IK K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I
Sbjct: 276 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQI 335
Query: 239 KKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 288
+K+Y +G MLTGE+K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 336 RKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL 385
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 91.9 bits (227), Expect = 5e-22
Identities = 42/281 (14%), Positives = 83/281 (29%), Gaps = 30/281 (10%)
Query: 4 NRYLQDA-----FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 58
A + D+ K W L + + G + K
Sbjct: 56 IADFLKAGCEVTILFADLHAYLDNMKAPW-ELLELRVSYYENVIKAMLESIGVPLEKLKF 114
Query: 59 FSDFDYVGGAFY-----KNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPS 113
DY Y + V + + + + + +P +QA+
Sbjct: 115 IKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYL 174
Query: 114 SFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMS 173
IDQ F P +GY K + + P L KMS
Sbjct: 175 KV-----------DAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLT--GSKMS 221
Query: 174 ASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE--- 230
+S+ S I + D + +K K+ K G ++ + +++ E
Sbjct: 222 SSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWG 281
Query: 231 ---DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 268
++K++ A + G++K + L +L++ +
Sbjct: 282 GNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIR 322
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
stearothermophilus, nca 1503 [TaxId: 1422]}
Length = 319
Score = 88.6 bits (219), Expect = 7e-21
Identities = 34/278 (12%), Positives = 75/278 (26%), Gaps = 25/278 (8%)
Query: 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
R Q A P+ + + E A+E + A + F+ + D
Sbjct: 56 RRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADG 115
Query: 65 ------VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPV-QAVPSFPSSFPH 117
+ + + K + ++ + + S+ +
Sbjct: 116 NPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAY 175
Query: 118 LFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 177
F D + +T + A P + G
Sbjct: 176 DFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTE 235
Query: 178 NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAELE 236
+ I++ S + N + ++YL +F E+E
Sbjct: 236 SGTIWLDKEKT----------------SPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIE 279
Query: 237 HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 274
+++E ++ LA+ +T+LV + R A+
Sbjct: 280 ALEQELREAPEKR-AAQKTLAEEVTKLVHGEEALRQAI 316
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 67.9 bits (165), Expect = 1e-13
Identities = 31/276 (11%), Positives = 76/276 (27%), Gaps = 24/276 (8%)
Query: 5 RYLQDA--FKVPLVIQLTDDEKCM-WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 61
R Q+ + L+ T K+ + + I+ F
Sbjct: 57 RRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDH 116
Query: 62 FDYVGGA--FYKNMVKVAKCVTYNKVVGIFGFTG-EDHIGKVSFPPVQAVPSFPSSFPHL 118
+ + + ++ Y K VG+ G + ++ ++
Sbjct: 117 GAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAID 176
Query: 119 FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 178
F + D + +T + + P + GK +
Sbjct: 177 FGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSES 236
Query: 179 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAELEH 237
A+++ + S + N + +K+L +F E++
Sbjct: 237 GAVWLDAE----------------KTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDR 280
Query: 238 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 273
+++ L E ++ LA+ +T+ + A
Sbjct: 281 LEQSKNEAPHLR-EAQKTLAEEVTKFIHGEDALNDA 315
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 66.6 bits (161), Expect = 3e-13
Identities = 40/271 (14%), Positives = 83/271 (30%), Gaps = 27/271 (9%)
Query: 5 RYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 64
LQ+A ++I L D + + ++E +++ N K A G +
Sbjct: 53 IDLQNA-GFDIIILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKYVYGSEFQLD 111
Query: 65 VGGA-FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 123
+ + + + E+ P +
Sbjct: 112 KDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYP-----------IMQVNDIH 160
Query: 124 HLRCL-IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 182
+L ++Q + R+ + K I + L GE +S + I
Sbjct: 161 YLGVDVAVGGMEQRKIHMLARE----LLPKKVVCIHNPVLTGLDGE--GKMSSSKGNFIA 214
Query: 183 VTDSAKAIKNKINKYAFSGGQESVELHRK-----LGANLEVDIPVKYLSFFLEDDAELEH 237
V DS + I+ KI K G + L L + P K+ E
Sbjct: 215 VDDSPEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDL--TVNSYEE 272
Query: 238 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 268
++ + + ++K +A+ L +++E +
Sbjct: 273 LESLFKNKELHPMDLKNAVAEELIKILEPIR 303
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus
aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}
Length = 96
Score = 26.2 bits (58), Expect = 2.1
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 247 MLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 282
MLTG+ K+ L + + Q+ + + + M+
Sbjct: 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQI 36
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain
{Thermotoga maritima [TaxId: 2336]}
Length = 105
Score = 26.0 bits (57), Expect = 2.3
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 230 EDDAELEHIKKEY----GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM-A 284
ED + + G G + +L L ++++ + + +T +++D
Sbjct: 33 EDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFAG 92
Query: 285 VRPLPNMFD 293
V + M D
Sbjct: 93 VDMITRMVD 101
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396,
C-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 81
Score = 25.1 bits (55), Expect = 3.1
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 252 VKQRLAKVLTELVERHQV 269
V+ RLA+ L L E
Sbjct: 2 VRGRLAETLLILKENFGF 19
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 26.3 bits (57), Expect = 3.6
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 250 GEVKQRLAKVLTELVE 265
G+V L+ + ELVE
Sbjct: 1 GQVVLSLSTAVKELVE 16
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 24.7 bits (54), Expect = 4.0
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 246 GMLTGEVKQRLAKVLTELVERH 267
L + K LA +T+++ RH
Sbjct: 10 RELDEQQKAALAADITDVIIRH 31
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 80
Score = 24.7 bits (54), Expect = 4.3
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 251 EVKQRLAKVLTELVERHQVA 270
++KQR+A +
Sbjct: 1 DIKQRIAGFFIDHANTTGRQ 20
>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497
{Methanosarcina mazei [TaxId: 2209]}
Length = 208
Score = 26.1 bits (57), Expect = 4.6
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 250 GEVKQRLAKVLTELVERHQVARAAVTD 276
K RL+ VL+ ER + +
Sbjct: 10 AGAKSRLSPVLSL-QEREEFVELMLNQ 35
>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda
constant domain, CL-lambda {Hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 104
Score = 25.0 bits (54), Expect = 5.7
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 111 FPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 144
FP S L + K L CL+ +
Sbjct: 11 FPPSPEELRTNKATLVCLVNDFYPGSATVTWKAN 44
>d1j3wa_ d.110.7.1 (A:) Giding protein MglB {Thermus thermophilus
[TaxId: 274]}
Length = 134
Score = 25.2 bits (55), Expect = 5.8
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 248 LTGEVKQRLAKVLTELVERHQVARAAVTD 276
L G +R +VL E + A + D
Sbjct: 3 LYGAPYERAVEVLEETLRETGARYALLID 31
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 218
Score = 25.5 bits (55), Expect = 7.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 250 GEVKQRLAKVLTELVE 265
GEV +R A V+ ELVE
Sbjct: 19 GEVVERPASVVKELVE 34
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit
IV {Cow (Bos taurus) [TaxId: 9913]}
Length = 144
Score = 25.1 bits (55), Expect = 8.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 14 PLVIQLTDDEKCMWKNLSVEESQRLAR 40
L + EK W +LS++E L R
Sbjct: 32 ASQKALKEKEKASWSSLSIDEKVELYR 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.407
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,103,839
Number of extensions: 52221
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 19
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)