Query 022695
Match_columns 293
No_of_seqs 141 out of 204
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:28:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1971 Lysyl hydroxylase [Pos 100.0 1.7E-49 3.7E-54 384.7 9.8 264 27-292 30-317 (415)
2 KOG1971 Lysyl hydroxylase [Pos 99.6 5.8E-16 1.3E-20 151.5 3.3 110 96-216 290-415 (415)
3 smart00702 P4Hc Prolyl 4-hydro 98.8 2.2E-08 4.7E-13 85.9 9.6 122 151-280 1-135 (178)
4 PRK05467 Fe(II)-dependent oxyg 98.1 3.2E-05 7E-10 71.3 10.4 114 157-279 7-138 (226)
5 PF03171 2OG-FeII_Oxy: 2OG-Fe( 94.8 0.026 5.6E-07 43.7 3.0 44 234-281 2-48 (98)
6 PLN00052 prolyl 4-hydroxylase; 93.7 0.43 9.3E-06 46.2 9.4 117 150-278 53-186 (310)
7 PF13661 2OG-FeII_Oxy_4: 2OG-F 91.0 0.32 6.9E-06 36.6 3.7 42 238-279 13-66 (70)
8 PF13640 2OG-FeII_Oxy_3: 2OG-F 85.8 0.59 1.3E-05 36.1 2.2 40 238-279 3-50 (100)
9 PHA02869 C4L/C10L-like gene fa 83.1 5.7 0.00012 40.3 8.3 119 151-277 9-152 (418)
10 PHA02813 hypothetical protein; 79.3 11 0.00024 37.5 8.7 49 232-281 93-147 (354)
11 PF11265 Med25_VWA: Mediator c 60.5 15 0.00033 34.4 4.8 69 203-273 26-106 (226)
12 PF05721 PhyH: Phytanoyl-CoA d 59.0 66 0.0014 26.6 8.0 118 157-276 11-144 (211)
13 PF13532 2OG-FeII_Oxy_2: 2OG-F 57.3 52 0.0011 28.2 7.3 104 153-265 2-131 (194)
14 PF09864 MliC: Membrane-bound 51.5 12 0.00027 27.8 2.2 46 234-279 6-54 (72)
15 KOG3636 Uncharacterized conser 48.5 7.8 0.00017 40.3 0.9 72 49-121 107-187 (669)
16 PRK13916 plasmid segregation p 47.2 11 0.00023 30.9 1.3 31 54-92 18-48 (97)
17 TIGR01762 chlorin-enz chlorina 43.1 1.7E+02 0.0036 27.8 8.9 21 153-173 17-37 (288)
18 TIGR02409 carnitine_bodg gamma 40.2 61 0.0013 31.5 5.6 32 247-278 185-222 (366)
19 TIGR02408 ectoine_ThpD ectoine 38.9 1.7E+02 0.0036 27.4 8.1 120 152-277 29-166 (277)
20 PRK15401 alpha-ketoglutarate-d 33.9 3.8E+02 0.0083 24.9 9.4 27 147-173 14-40 (213)
21 cd00250 CAS_like Clavaminic ac 31.1 69 0.0015 29.1 4.1 67 206-277 58-130 (262)
22 TIGR02410 carnitine_TMLD trime 30.6 1E+02 0.0022 30.0 5.4 31 247-277 177-213 (362)
23 TIGR01563 gp16_SPP1 phage head 30.5 64 0.0014 24.7 3.3 57 214-270 35-91 (101)
24 TIGR00568 alkb DNA alkylation 22.8 1E+02 0.0022 27.4 3.5 31 234-266 95-130 (169)
No 1
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-49 Score=384.66 Aligned_cols=264 Identities=33% Similarity=0.461 Sum_probs=256.8
Q ss_pred cccccccCCCCCCCCCCccccccCCCChhHHHHHhhhCCccccCCCHHHHHHHHHHHHHHhCccchhhhhhhhHHHhhhh
Q 022695 27 ASYRLRLNPSSEHKPDSYDDLHQLEFTPLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDGERTRVQRHKEYRQRI 106 (293)
Q Consensus 27 ~~~rl~~~p~~~h~~~~y~d~~~~~~~~~~~~~le~~lp~~~~~~~r~~k~~~~~~il~~~~~~~eR~r~~~~~e~~~~I 106 (293)
++.++.+.|+.+|.+++|+|+ +|+|+++..++||.|+|+.+|++.++.|+|||.++|.+|+|..++.++..+..|+++|
T Consensus 30 ni~ld~~~~~fq~l~g~~~dv-~Lkf~~~~~~~ln~~~pt~~l~~~~n~~~K~~~d~l~nY~~r~~~~~~l~~~~~r~~~ 108 (415)
T KOG1971|consen 30 NITLDHRSRIFQNLNGAYEDV-VLKFSSGQVRALNVAYPTLPLTVHGNGPAKFMLDYLGNYIPREWTGCSLCCKNYRELI 108 (415)
T ss_pred cccccCcCcccccCcCCcCCe-eEecccCchhhhhhcCCCcceeeccCccHHHHHHHHhhhcchhhhhhhccccccchhh
Confidence 446899999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCccccccCCCCCCChhHHHHHhhhcHHhhhhhccccCCceeEeecCCHHHHHHHHHHHHhhhhhcccCCCCcc
Q 022695 107 ISNYQPLHRELFTMHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIM 186 (293)
Q Consensus 107 ~~~Y~plhpdLy~l~pe~yl~p~f~~ai~~~tee~~~~~~~ep~PdVY~FP~ft~~FC~~LieE~E~f~~Ws~gs~~p~~ 186 (293)
.++||+|+-..|.++|+.++.|+|..+...++++.|+++.+|+.|++|.||||++.||+++++|||+|++|+.+++.+++
T Consensus 109 ~s~~q~l~~~~Y~~dp~~l~i~n~~~~~~~~~~~~~~~~~~e~~p~~~v~~~~~~~~~ea~~~evE~~r~~~~dad~~i~ 188 (415)
T KOG1971|consen 109 KSNLQRLLELDYPLDPENLFIPNFEVAHSANIKEFFRRHGSEYSPGKFVFPMFQPDFSEARLMEVEHFRKFSVDADFVIT 188 (415)
T ss_pred hhccccchhccCCCCHHHhccccccccchhccHHHHHHhccccCCeeEEeeccCccHHHHHHHHHHHhhhcccccceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccc--ChHHHHHHHHHHhhchhhh---------------------hcCCCCCCCCCcceeeeEEEEec
Q 022695 187 RPNTMNKFGAVLDDF--GLETMLDKLMNDFIRPISK---------------------VFFPEVGGSTLDSHHGFVVEYGM 243 (293)
Q Consensus 187 RPn~mN~YGvVL~~i--G~e~~~~~ll~~yi~Pl~~---------------------~lfp~~~g~~ldsh~~FVVrY~~ 243 (293)
|||+|++||++++++ ||..+..+|.++|+.||++ .+||.++|..||+|++|+|+|..
T Consensus 189 ~P~~~~~li~~~k~~ia~l~~~~~kL~enF~~al~~~~yyars~dy~~~v~g~~vg~~~~P~v~~~yl~~~~~f~~e~~~ 268 (415)
T KOG1971|consen 189 RPNTLRNLIVLNKEFIAPLVSRHGKLWENFWGALSADGYYARSEDYVDIVQGNRVGVWNVPYVCGAYLDSHDAFRVESSE 268 (415)
T ss_pred CChhHHHHHHHhhhccchhhhhhHHHHHHhhhhhccccchhhhhhhhhhhcccceeEEeecccceeEEecccceeeeccC
Confidence 999999999999999 9999999999999999999 99999999999999999999966
Q ss_pred C-CCCCCcccccCCceeeEeecCCCccCCceEeceecccccccCCCCCCC
Q 022695 244 D-RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEV 292 (293)
Q Consensus 244 ~-~d~~L~~H~D~SevTlNV~LgkdFeGGgl~F~g~~c~~h~~~~~~~ee 292 (293)
+ .|+++++|+|++++|+||||+++|+||.++|.+.+|++|+++ .+++|
T Consensus 269 ~~~Dpdm~~~~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~-~~~~E 317 (415)
T KOG1971|consen 269 DNRDPDMGFCVDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRT-DDLWE 317 (415)
T ss_pred cCCCCccccccchhhcceeEEecccccCCeeEeeccccccccCC-Cchhh
Confidence 5 999999999999999999999999999999999999999999 65554
No 2
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5.8e-16 Score=151.52 Aligned_cols=110 Identities=21% Similarity=0.464 Sum_probs=97.4
Q ss_pred hhhhHHHhhhhhh-cCC--CCCc-cccccC-----C-CCCCChhHHHHHhhhcHHhhhhhccccCCceeEeecCCHHHHH
Q 022695 96 VQRHKEYRQRIIS-NYQ--PLHR-ELFTMH-----A-PSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCE 165 (293)
Q Consensus 96 ~~~~~e~~~~I~~-~Y~--plhp-dLy~l~-----p-e~yl~p~f~~ai~~~tee~~~~~~~ep~PdVY~FP~ft~~FC~ 165 (293)
+.|++++|+++.. .|+ ++++ ++|+|+ | ++|||++|.++.+.+ .++.+|||+|||||++ ++|+
T Consensus 290 l~nq~~gG~L~~~~~~~~~h~~~~~~~EiFdn~h~p~qa~LHrg~~~~~a~~------~~~~~~~~nv~~~~~~--~~c~ 361 (415)
T KOG1971|consen 290 LSNQFEGGELLFTGKYCTKHLRTDDLWEIFDNSHDPGQAYLHRGYHKHGARA------TIVGQPCPNVYWFPIS--SLCD 361 (415)
T ss_pred ecccccCCeeEeeccccccccCCCchhhhccCcCCCccceecCcchhccccc------cCCCCCCCceeeehhH--HHHH
Confidence 7899999999888 887 7777 999985 2 999999999999987 5889999999999999 9999
Q ss_pred HHHHHHHhhhhhcccCCCCccCCCCCCCcccc------ccccChHHHHHHHHHHhhc
Q 022695 166 MLLSEVENFERWVHDTRFRIMRPNTMNKFGAV------LDDFGLETMLDKLMNDFIR 216 (293)
Q Consensus 166 ~LieE~E~f~~Ws~gs~~p~~RPn~mN~YGvV------L~~iG~e~~~~~ll~~yi~ 216 (293)
+|++||++|++|++|.+.+ -+..++|++| |+++|+++.|..++..||+
T Consensus 362 el~~~me~f~~Ws~g~~~D---~r~~~gye~~~trdi~m~q~~~e~~~~~~~~~~~~ 415 (415)
T KOG1971|consen 362 ELVEEMEEFGRWSGGCAED---KRLAGGYENVPTRDIHMRQVGFERLWLKFLRTYVR 415 (415)
T ss_pred HHHHHHHHhhcccccchhh---hhhcCCcccCCchhhHHHhhhhHHHHHHHHHHhhC
Confidence 9999999999999998776 3445667766 7789999999999999985
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=98.83 E-value=2.2e-08 Score=85.92 Aligned_cols=122 Identities=29% Similarity=0.412 Sum_probs=74.5
Q ss_pred CceeEee-cCCHHHHHHHHHHHHhhhhhcccCCCCccCCCCC----CCccccccccChHHHHHHHHHHhhchhhhhcCCC
Q 022695 151 PGIYTFE-MLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTM----NKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPE 225 (293)
Q Consensus 151 PdVY~FP-~ft~~FC~~LieE~E~f~~Ws~gs~~p~~RPn~m----N~YGvVL~~iG~e~~~~~ll~~yi~Pl~~~lfp~ 225 (293)
|+||.++ +||+++|++||++++... |..+.....+.++.. +..+..++.-.-.. +.++|....+.+++.
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~-~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~-----~~~~l~~~i~~~~~~ 74 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLG-WRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDL-----VIERIRQRLADFLGL 74 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhc-ccceeecCCCCccccCCCEeecceecCCCCCCH-----HHHHHHHHHHHHHCC
Confidence 7899997 999999999999999865 332211111111000 01122232211011 112222222233322
Q ss_pred CCCCCCcceeeeEEEEecCCCCCCcccccCC--------ceeeEeecCCCccCCceEeceecc
Q 022695 226 VGGSTLDSHHGFVVEYGMDRDVELGFHVDDS--------EVTLNVCLGREFSGGELFFRGVRC 280 (293)
Q Consensus 226 ~~g~~ldsh~~FVVrY~~~~d~~L~~H~D~S--------evTlNV~LgkdFeGGgl~F~g~~c 280 (293)
..+.........+++|.++ ..+.+|+|.+ .+|+.|-|+++++||++.|.+..+
T Consensus 75 ~~~~~~~~~~~~~~~Y~~g--~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~~ 135 (178)
T smart00702 75 LRGLPLSAEDAQVARYGPG--GHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLGL 135 (178)
T ss_pred CchhhccCcceEEEEECCC--CcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCCC
Confidence 1111224567889999885 6899999955 799999999999999999998876
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=98.06 E-value=3.2e-05 Score=71.33 Aligned_cols=114 Identities=20% Similarity=0.303 Sum_probs=69.2
Q ss_pred ecCCHHHHHHHHHHHHhhhhhcccCCCCc-cCCCCCCCccccccccChHHHHHHHHHHhhc--hhhhhcCCCCCCCCCcc
Q 022695 157 EMLQPRFCEMLLSEVENFERWVHDTRFRI-MRPNTMNKFGAVLDDFGLETMLDKLMNDFIR--PISKVFFPEVGGSTLDS 233 (293)
Q Consensus 157 P~ft~~FC~~LieE~E~f~~Ws~gs~~p~-~RPn~mN~YGvVL~~iG~e~~~~~ll~~yi~--Pl~~~lfp~~~g~~lds 233 (293)
.+||++.|+.+++.+|.- .|..|..-.- .-+.--||--+..+.- +...+...+..++. |+-... .-.. .-
T Consensus 7 ~vLs~eec~~~~~~le~~-~~~dg~~taG~~~~~vKnN~ql~~d~~-~a~~l~~~i~~~L~~~~l~~sa---~lp~--~i 79 (226)
T PRK05467 7 DVLSPEEVAQIRELLDAA-EWVDGRVTAGAQAAQVKNNQQLPEDSP-LARELGNLILDALTRNPLFFSA---ALPR--KI 79 (226)
T ss_pred ccCCHHHHHHHHHHHHhc-CCccCCcCcCccchhcccccccCCCCH-HHHHHHHHHHHHHhcCchhhhh---cccc--cc
Confidence 479999999999999984 5876532110 0011223323333333 44444455555553 431111 1111 12
Q ss_pred eeeeEEEEecCCCCCCcccccCC-------------ceeeEeecC--CCccCCceEeceec
Q 022695 234 HHGFVVEYGMDRDVELGFHVDDS-------------EVTLNVCLG--REFSGGELFFRGVR 279 (293)
Q Consensus 234 h~~FVVrY~~~~d~~L~~H~D~S-------------evTlNV~Lg--kdFeGGgl~F~g~~ 279 (293)
+.-.+.+|.++ -..++|+|++ .+|+.|-|+ ++|+||+|.|....
T Consensus 80 ~~~~f~rY~~G--~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~ 138 (226)
T PRK05467 80 HPPLFNRYEGG--MSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTY 138 (226)
T ss_pred ccceEEEECCC--CccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCC
Confidence 33457899877 6889999975 578999998 47999999998643
No 5
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=94.85 E-value=0.026 Score=43.75 Aligned_cols=44 Identities=23% Similarity=0.121 Sum_probs=35.4
Q ss_pred eeeeEEEEe-cCCCCCCcccccC--CceeeEeecCCCccCCceEeceeccc
Q 022695 234 HHGFVVEYG-MDRDVELGFHVDD--SEVTLNVCLGREFSGGELFFRGVRCD 281 (293)
Q Consensus 234 h~~FVVrY~-~~~d~~L~~H~D~--SevTlNV~LgkdFeGGgl~F~g~~c~ 281 (293)
++..+.+|. +++...+++|+|. +.+||.+. .+||||+|....+.
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~~~~~Til~~----~~~~gL~~~~~~~~ 48 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDEDGLLTILFQ----DEVGGLQVRDDGEW 48 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES--SSEEEEEE----TSTS-EEEEETTEE
T ss_pred CEEEEEECCCcccCCceeCCCcCCCCeEEEEec----ccchheeccccccc
Confidence 456789999 7789999999999 99999998 78999999876533
No 6
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=93.73 E-value=0.43 Score=46.20 Aligned_cols=117 Identities=20% Similarity=0.359 Sum_probs=65.5
Q ss_pred CCceeEee-cCCHHHHHHHHHHHHh-hhhhcc---cCCCCccCCCCCCCccccccccChHHHHHHHHHHhhchhhhhcCC
Q 022695 150 IPGIYTFE-MLQPRFCEMLLSEVEN-FERWVH---DTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFP 224 (293)
Q Consensus 150 ~PdVY~FP-~ft~~FC~~LieE~E~-f~~Ws~---gs~~p~~RPn~mN~YGvVL~~iG~e~~~~~ll~~yi~Pl~~~lfp 224 (293)
.|.||.++ +||++.|+.||+-.+. +..+.- +++.... ...-..+++.|..-. +.....+ ++.|+-++ ..|
T Consensus 53 ~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~-s~~RTS~~~~l~~~~-dpvv~~I-~~Ria~~t--~lp 127 (310)
T PLN00052 53 QPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVM-SEVRTSSGMFLDKRQ-DPVVSRI-EERIAAWT--FLP 127 (310)
T ss_pred CCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCcccc-CCCEEecceeecCCC-CHHHHHH-HHHHHHHh--CCC
Confidence 68898875 8999999999988775 222110 0010000 000112344443221 1222222 23333332 123
Q ss_pred CCCCCCCcceeeeEEEEecCCCCCCccccc------------CCceeeEeecCCCccCCceEecee
Q 022695 225 EVGGSTLDSHHGFVVEYGMDRDVELGFHVD------------DSEVTLNVCLGREFSGGELFFRGV 278 (293)
Q Consensus 225 ~~~g~~ldsh~~FVVrY~~~~d~~L~~H~D------------~SevTlNV~LgkdFeGGgl~F~g~ 278 (293)
-..+. ..-|++|.+++ ...+|+| +.-.|+=+=|++..+||++.|-..
T Consensus 128 ~~~~E-----~lQVlrY~~Gq--~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~ 186 (310)
T PLN00052 128 EENAE-----NIQILRYEHGQ--KYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNA 186 (310)
T ss_pred cccCc-----ceEEEecCCCC--CCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCc
Confidence 11111 34699999885 3677777 235777788899899999999976
No 7
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=91.01 E-value=0.32 Score=36.59 Aligned_cols=42 Identities=38% Similarity=0.609 Sum_probs=33.3
Q ss_pred EEEEecCCCCCCcccccCCc--------eeeEeecC----CCccCCceEeceec
Q 022695 238 VVEYGMDRDVELGFHVDDSE--------VTLNVCLG----REFSGGELFFRGVR 279 (293)
Q Consensus 238 VVrY~~~~d~~L~~H~D~Se--------vTlNV~Lg----kdFeGGgl~F~g~~ 279 (293)
+-.|+......+.+|+|+.. +|+-|-|+ .+|.||.++|....
T Consensus 13 ~~~~~~~~g~~~~~H~D~~~~~~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~~ 66 (70)
T PF13661_consen 13 FRFYRYRRGDFFGWHVDADPSSSGKRRFLTLLLYLNEDWDEDFGGGELFFDDDG 66 (70)
T ss_pred eeEEEcCCCCEeeeeEcCCccccccceeEEEEEEecccccCccCCcEEEEeCCC
Confidence 33466677889999999655 78889998 78999999997654
No 8
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=85.80 E-value=0.59 Score=36.11 Aligned_cols=40 Identities=38% Similarity=0.495 Sum_probs=27.7
Q ss_pred EEEEecCCCCCCcccccC-----CceeeEeecC-CC--ccCCceEeceec
Q 022695 238 VVEYGMDRDVELGFHVDD-----SEVTLNVCLG-RE--FSGGELFFRGVR 279 (293)
Q Consensus 238 VVrY~~~~d~~L~~H~D~-----SevTlNV~Lg-kd--FeGGgl~F~g~~ 279 (293)
+.+|.+ ...+.+|+|. ..+|+-+-|+ .+ ++||++.|....
T Consensus 3 ~~~y~~--G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~ 50 (100)
T PF13640_consen 3 LNRYPP--GGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSK 50 (100)
T ss_dssp EEEEET--TEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS
T ss_pred EEEECc--CCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccc
Confidence 456643 4588999998 5677777787 44 799999999764
No 9
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=83.12 E-value=5.7 Score=40.26 Aligned_cols=119 Identities=14% Similarity=0.066 Sum_probs=67.6
Q ss_pred CceeEeecCCHHHHH----HHHHHHH----hhh--hhcccCCCCccCCCCCCCcccc------ccccChHHHHHHHHHHh
Q 022695 151 PGIYTFEMLQPRFCE----MLLSEVE----NFE--RWVHDTRFRIMRPNTMNKFGAV------LDDFGLETMLDKLMNDF 214 (293)
Q Consensus 151 PdVY~FP~ft~~FC~----~LieE~E----~f~--~Ws~gs~~p~~RPn~mN~YGvV------L~~iG~e~~~~~ll~~y 214 (293)
.|+-+.-+|++..-. .|+++++ ++- .|+.+.-++ ..++++++ -.|+=++..+..-+-+-
T Consensus 9 ~~~l~vh~Fsd~~f~~~K~~~~~~i~~~~~n~~~~~~~~s~i~~-----~~~g~e~~~~~~~ksKqii~e~~La~~L~er 83 (418)
T PHA02869 9 NNQLAVHRFTETRFTSFKKELLVNLGISDLNDIKNICEDSKIFF-----PEKRTELLSIKDRKSKQIVFENSLNDDLLKK 83 (418)
T ss_pred CCeEEEEEecHHHHHHHHHHHHHHhccccccccccccccceeec-----cccCceeEeeccccceeEEechHHHHHHHHH
Confidence 467778889988444 4455554 222 465543332 23444443 23455554443433334
Q ss_pred hchhhhhcCCCC-CCCCCcceeeeEEEEecCCCCCCcccccC--------CceeeEeecCCCccCCceEece
Q 022695 215 IRPISKVFFPEV-GGSTLDSHHGFVVEYGMDRDVELGFHVDD--------SEVTLNVCLGREFSGGELFFRG 277 (293)
Q Consensus 215 i~Pl~~~lfp~~-~g~~ldsh~~FVVrY~~~~d~~L~~H~D~--------SevTlNV~LgkdFeGGgl~F~g 277 (293)
|+++.-.-|-++ ---.+..+-.| +||.++. .+.+|.|. |.+||=+=|++.++||++.|.-
T Consensus 84 lr~lLp~~lk~~v~~V~lnerirf-yrY~kGq--~F~~H~Dg~~~rs~e~s~~tLLLYLNd~~~GGET~f~~ 152 (418)
T PHA02869 84 LHALIYDELSTVVDSVTVENTVTL-IMYEKGD--YFARHRDFSTVFSKNIICVHLLLYLEQPETGGETVIYI 152 (418)
T ss_pred HHHhhhHHhhCccceEEEcceEEE-EEECCCC--cccccccCceecCCCEEEEEEEEEEeccCCCCceEEEe
Confidence 444322222221 11134445444 5787664 45677776 6789999999999999999987
No 10
>PHA02813 hypothetical protein; Provisional
Probab=79.35 E-value=11 Score=37.52 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=33.2
Q ss_pred cceeeeEEEEecCC--CCCCcccc----cCCceeeEeecCCCccCCceEeceeccc
Q 022695 232 DSHHGFVVEYGMDR--DVELGFHV----DDSEVTLNVCLGREFSGGELFFRGVRCD 281 (293)
Q Consensus 232 dsh~~FVVrY~~~~--d~~L~~H~----D~SevTlNV~LgkdFeGGgl~F~g~~c~ 281 (293)
..+..| +||.++. +.+-.+++ +.|.+||=+=|++.++||++.|.--.++
T Consensus 93 nerirf-yrY~kGq~F~~H~Dg~~~r~k~~s~~tLLLYLN~~~~GGeT~f~~~~~t 147 (354)
T PHA02813 93 DNTITL-IKYEKGDFFNNHRDFIHFKSKNCYCYHLVLYLNNTSKGGNTNIHIKDNT 147 (354)
T ss_pred cceEEE-EEECCCcccCcccCCceeecCCceEEEEEEEEeccCCCCceEEEcCCCc
Confidence 344444 6888776 33333332 3477889999999999999999865333
No 11
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=60.50 E-value=15 Score=34.43 Aligned_cols=69 Identities=25% Similarity=0.246 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHhhchhhhhcCCCCC------CCCCcceeeeEEEEecCCCCCCcccccCCceeeEeec------CCCccC
Q 022695 203 LETMLDKLMNDFIRPISKVFFPEVG------GSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCL------GREFSG 270 (293)
Q Consensus 203 ~e~~~~~ll~~yi~Pl~~~lfp~~~------g~~ldsh~~FVVrY~~~~d~~L~~H~D~SevTlNV~L------gkdFeG 270 (293)
+-..|..|..+||-|+.+.+-.+.- +...-..-+.||-... |..-.+=.+-+.+|-++-. .-+|.|
T Consensus 26 lgpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~--d~~~~~~v~~~g~T~~~~~fl~~L~~I~f~G 103 (226)
T PF11265_consen 26 LGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTA--DCYPEPIVQRSGPTSSPQKFLQWLDAIQFSG 103 (226)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEecc--CCCcccceeccCCcCCHHHHHHHHHccCcCC
Confidence 4579999999999999999885421 1112245666665533 4445555667777777765 469999
Q ss_pred Cce
Q 022695 271 GEL 273 (293)
Q Consensus 271 Ggl 273 (293)
||-
T Consensus 104 GG~ 106 (226)
T PF11265_consen 104 GGF 106 (226)
T ss_pred CCc
Confidence 984
No 12
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=58.98 E-value=66 Score=26.62 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=53.8
Q ss_pred ecCCHHHHHHHHHHHHhh--hhhcccCCCCccCCCCC-CCccccccccChHHHHHHHHHH-hhchhhhhcCCCCCCCCCc
Q 022695 157 EMLQPRFCEMLLSEVENF--ERWVHDTRFRIMRPNTM-NKFGAVLDDFGLETMLDKLMND-FIRPISKVFFPEVGGSTLD 232 (293)
Q Consensus 157 P~ft~~FC~~LieE~E~f--~~Ws~gs~~p~~RPn~m-N~YGvVL~~iG~e~~~~~ll~~-yi~Pl~~~lfp~~~g~~ld 232 (293)
.+|+++-|+.|.++++.. ..+..+.+......... ..+...+ .--...+..++.. .+..+.+.++..-......
T Consensus 11 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 88 (211)
T PF05721_consen 11 NVLSPEEVERLREELDRLDDRALEPDQDVSDFFDESFFGDYTEQL--AKSPNFYDLFLHPPRILDLVRALLGSDVFVQNW 88 (211)
T ss_dssp TSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEESTSCCCTCCCCG--CCCHHHHHHHHTHHHHHHHHHHHHTSSEEEE--
T ss_pred CcCCHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccc--ccchhhHHHHhhHHHHHHHHHHhhCCcchhhhh
Confidence 489999999999999986 22222221111000111 1111112 0112445666665 6777777766421100000
Q ss_pred ceeeeEEEEec-CCCCC-CcccccC---------CceeeEeecCC-CccCCceEec
Q 022695 233 SHHGFVVEYGM-DRDVE-LGFHVDD---------SEVTLNVCLGR-EFSGGELFFR 276 (293)
Q Consensus 233 sh~~FVVrY~~-~~d~~-L~~H~D~---------SevTlNV~Lgk-dFeGGgl~F~ 276 (293)
.+..+..-+.+ ..... ..+|.|. ..+|+-|+|.+ .=+.|++.+.
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~~~~~~~~~~wi~L~d~~~~~G~~~v~ 144 (211)
T PF05721_consen 89 LQSMYQDIVKPPGPGAAVQPWHQDAPYWHTDPPENQLTVWIALDDITPENGPLEVV 144 (211)
T ss_dssp EEEEEEEEEE-TTTTC-EEEEBEHHHCSTEESSSCEEEEEEESS-BBTTCTCEEEE
T ss_pred hHHHHHhhhhccccCCCCCCCCCCCcccccCCccceEEEEEeeccCCcccCceEee
Confidence 11222002233 22232 5788772 34577888854 3456666654
No 13
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=57.25 E-value=52 Score=28.17 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=46.2
Q ss_pred eeEee-cCCHHHHHHHHHHHHhhhhhcccCCCC---ccCCCC-C-----------CCccc--cccccChH---HHHHHHH
Q 022695 153 IYTFE-MLQPRFCEMLLSEVENFERWVHDTRFR---IMRPNT-M-----------NKFGA--VLDDFGLE---TMLDKLM 211 (293)
Q Consensus 153 VY~FP-~ft~~FC~~LieE~E~f~~Ws~gs~~p---~~RPn~-m-----------N~YGv--VL~~iG~e---~~~~~ll 211 (293)
+|.+| +++++..++|++++..-..|....... ...+.. . -.|+. ......+. ..+..++
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~~~~ 81 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYPMGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLSRLL 81 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCCCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcCCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHHHHH
Confidence 44443 789999999999999654454332111 000100 0 01222 12333332 3344444
Q ss_pred HHhhchhhhhcCCCCCCCCCcceeeeEEEEecCCCCCCcccccCCce-----eeEeecC
Q 022695 212 NDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEV-----TLNVCLG 265 (293)
Q Consensus 212 ~~yi~Pl~~~lfp~~~g~~ldsh~~FVVrY~~~~d~~L~~H~D~Sev-----TlNV~Lg 265 (293)
+....-.. ..++ .. .....+-.|.++. .+++|.|+.++ -+.|+||
T Consensus 82 ~~~~~~~~--~~~~---~~--~n~~liN~Y~~g~--~i~~H~D~~~~~~~~~I~slSLG 131 (194)
T PF13532_consen 82 ERLVEATG--IPPG---WR--PNQCLINYYRDGS--GIGPHSDDEEYGFGPPIASLSLG 131 (194)
T ss_dssp HHHHHHHT---SHS---S----SEEEEEEESSTT---EEEE---TTC-CCSEEEEEEEE
T ss_pred HHHHHHhc--cccC---CC--CCEEEEEecCCCC--CcCCCCCcccccCCCcEEEEEEc
Confidence 43322111 1221 12 2355677898865 99999998854 5566664
No 14
>PF09864 MliC: Membrane-bound lysozyme-inhibitor of c-type lysozyme; InterPro: IPR018660 This entry contains proteins that represent a novel family of bacterial lysozyme inhibitors with widespread homologues in Gram-negative bacteria, that may function as colonization or virulence factors in bacteria interacting with an animal host []. ; PDB: 3OE3_F 2F09_A 3F6Z_D.
Probab=51.49 E-value=12 Score=27.83 Aligned_cols=46 Identities=28% Similarity=0.289 Sum_probs=37.4
Q ss_pred eeeeEEEEecCCCCCCcccccCCceeeEeec---CCCccCCceEeceec
Q 022695 234 HHGFVVEYGMDRDVELGFHVDDSEVTLNVCL---GREFSGGELFFRGVR 279 (293)
Q Consensus 234 h~~FVVrY~~~~d~~L~~H~D~SevTlNV~L---gkdFeGGgl~F~g~~ 279 (293)
-..|.|+|..+.+.....-+++.+++|.... |..|++|++.|..-.
T Consensus 6 ~~~i~v~~~~~~~~~a~l~~~~~~~~L~~~~SaSGarY~~~~~~~w~kG 54 (72)
T PF09864_consen 6 GQRISVTYINDDDPSAVLRYDDQEYTLPQAPSASGARYSNGGYEFWTKG 54 (72)
T ss_dssp SCEEEEEEEECTTEEEEEECCTEEEEEEEECTSSSEEEECCTEEEEEET
T ss_pred CCEEEEEEcCCCCcEEEEEECCEEEEEEEeecCCCCcEeCCCEEEEEEC
Confidence 3568999999888667777788999999888 568999999998544
No 15
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=48.50 E-value=7.8 Score=40.33 Aligned_cols=72 Identities=17% Similarity=0.280 Sum_probs=58.1
Q ss_pred cCCCChhHHHHHhhhCCccccCCCHHHHHHHHHHHHHHhCccchhhhhhhhHHHhhhhhh------cCC---CCCccccc
Q 022695 49 QLEFTPLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDGERTRVQRHKEYRQRIIS------NYQ---PLHRELFT 119 (293)
Q Consensus 49 ~~~~~~~~~~~le~~lp~~~~~~~r~~k~~~~~~il~~~~~~~eR~r~~~~~e~~~~I~~------~Y~---plhpdLy~ 119 (293)
.++|.+++ +-++--+|--.|+.||-.-...|-.|-.+|+|.+-|.|++--+-||-+|.= +|- +.-||+|+
T Consensus 107 n~~Y~~d~-gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~ 185 (669)
T KOG3636|consen 107 NMDYIKDI-GWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYT 185 (669)
T ss_pred CCcccccc-cHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHH
Confidence 35565553 456666788899999999999999999999999999999999999977752 121 67899998
Q ss_pred cC
Q 022695 120 MH 121 (293)
Q Consensus 120 l~ 121 (293)
++
T Consensus 186 ln 187 (669)
T KOG3636|consen 186 LN 187 (669)
T ss_pred HH
Confidence 84
No 16
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=47.24 E-value=11 Score=30.95 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=24.4
Q ss_pred hhHHHHHhhhCCccccCCCHHHHHHHHHHHHHHhCccch
Q 022695 54 PLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDGE 92 (293)
Q Consensus 54 ~~~~~~le~~lp~~~~~~~r~~k~~~~~~il~~~~~~~e 92 (293)
|.+|.-|| +.||-.|-.|.|++|+||+.++-
T Consensus 18 ~~iF~FL~--------~~P~GT~~~~iR~~L~rYI~~~G 48 (97)
T PRK13916 18 PQIFDFLE--------NVPRGTKTAHIREALRRYIEEIG 48 (97)
T ss_pred HHHHHHHH--------HCCCCCccHHHHHHHHHHHHhcC
Confidence 45566655 67888999999999999987553
No 17
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=43.15 E-value=1.7e+02 Score=27.85 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=16.9
Q ss_pred eeEeecCCHHHHHHHHHHHHh
Q 022695 153 IYTFEMLQPRFCEMLLSEVEN 173 (293)
Q Consensus 153 VY~FP~ft~~FC~~LieE~E~ 173 (293)
|..-.+|+++..+.|.++++.
T Consensus 17 v~~~~~~s~eei~~L~~~~~~ 37 (288)
T TIGR01762 17 IGPFTLYSPEEMKETWKRIRL 37 (288)
T ss_pred EeCcCCCCHHHHHHHHHHHHH
Confidence 344679999999999998863
No 18
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=40.16 E-value=61 Score=31.47 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=23.8
Q ss_pred CCCcccccCC------ceeeEeecCCCccCCceEecee
Q 022695 247 VELGFHVDDS------EVTLNVCLGREFSGGELFFRGV 278 (293)
Q Consensus 247 ~~L~~H~D~S------evTlNV~LgkdFeGGgl~F~g~ 278 (293)
..|.+|+|.+ .+++=-|+...=+||++.|...
T Consensus 185 ~~l~~HtD~~y~~~pP~~~~L~c~~~~~~GG~T~~~d~ 222 (366)
T TIGR02409 185 GGLPFHTDNPYRDHPPGLQLLHCLESTVEGGDSLFVDG 222 (366)
T ss_pred ccccccccCCccCCCCceeeeeecccCCCCcceeeeeH
Confidence 4688999976 3455567766678999999763
No 19
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=38.87 E-value=1.7e+02 Score=27.36 Aligned_cols=120 Identities=16% Similarity=0.222 Sum_probs=57.6
Q ss_pred ceeEe-ecCCHHHHHHHHHHHHhhhhhccc--CCCCccCCCCCCCccccccccChHHHHHHHH-HHhhchhhhhcCCCCC
Q 022695 152 GIYTF-EMLQPRFCEMLLSEVENFERWVHD--TRFRIMRPNTMNKFGAVLDDFGLETMLDKLM-NDFIRPISKVFFPEVG 227 (293)
Q Consensus 152 dVY~F-P~ft~~FC~~LieE~E~f~~Ws~g--s~~p~~RPn~mN~YGvVL~~iG~e~~~~~ll-~~yi~Pl~~~lfp~~~ 227 (293)
|.... .+|+++.|+.|.++++........ ..-.+..+. -+.+..+++.......+..|+ ..-|..+++.|+..
T Consensus 29 Gyvvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~l~~~p~l~~~~~~LlG~-- 105 (277)
T TIGR02408 29 GFLLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEPG-SNAVRSIFEVHVLSPILARLVRDPRVANAARQILGS-- 105 (277)
T ss_pred CEEECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecCC-CCceEEEecccccCHHHHHHHcChHHHHHHHHHcCC--
Confidence 44443 789999999999999987431100 000000000 111112222223333333332 23344444444431
Q ss_pred CCCCcceeeeEEEEecC-CCCCCcccccCC------------ceeeEeecCC-CccCCceEece
Q 022695 228 GSTLDSHHGFVVEYGMD-RDVELGFHVDDS------------EVTLNVCLGR-EFSGGELFFRG 277 (293)
Q Consensus 228 g~~ldsh~~FVVrY~~~-~d~~L~~H~D~S------------evTlNV~Lgk-dFeGGgl~F~g 277 (293)
...-.+..+.. +|+ ....+.+|.|.+ .+|+-|+|.+ .=+-|++.|+-
T Consensus 106 -~~~l~~~~l~~--kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIP 166 (277)
T TIGR02408 106 -DVYVHQSRINM--KPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVP 166 (277)
T ss_pred -CeEEEeeeeee--cCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEec
Confidence 11112233333 454 344667888743 4778888865 33447777653
No 20
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=33.92 E-value=3.8e+02 Score=24.87 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=24.5
Q ss_pred cccCCceeEeecCCHHHHHHHHHHHHh
Q 022695 147 AEPIPGIYTFEMLQPRFCEMLLSEVEN 173 (293)
Q Consensus 147 ~ep~PdVY~FP~ft~~FC~~LieE~E~ 173 (293)
++..||++.+|=|..+.+++|++++..
T Consensus 14 ~~~~~g~~~~~~~~~~~~~~l~~~~~~ 40 (213)
T PRK15401 14 EPLAPGAVLLRGFALAAAEALLAAIEA 40 (213)
T ss_pred eecCCCcEEeCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999998
No 21
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=31.10 E-value=69 Score=29.14 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=40.6
Q ss_pred HHHHHHHHhhchhhhhcCCCCCCCCCcceeeeEEEEecCCCCCCcccccC------CceeeEeecCCCccCCceEece
Q 022695 206 MLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDD------SEVTLNVCLGREFSGGELFFRG 277 (293)
Q Consensus 206 ~~~~ll~~yi~Pl~~~lfp~~~g~~ldsh~~FVVrY~~~~d~~L~~H~D~------SevTlNV~LgkdFeGGgl~F~g 277 (293)
....+.+.+ .++....|+++..-.-+. ..-...| ....|.+|+|. ..+++=-|+..+-+||.+.|..
T Consensus 58 ~~~~~~~~~-g~~~~~~~~~~~~v~~~~-~~~~~~~---t~~~l~~HtD~~y~~~pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 58 ALLGLAERI-GFIRGTLYGDVVPVPGKE-NAQNGAY---TNTLLPLHTDLAYHEYRPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred HHHHHHHHh-cccccccCCCeEEeccCC-Ccccccc---ccCCcCccccCCCCCCCCceEEEEEeccCCCCCcceeee
Confidence 344444444 466666666543211011 0112223 45788899998 4777778887777899999987
No 22
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=30.64 E-value=1e+02 Score=30.04 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=24.3
Q ss_pred CCCcccccCC------ceeeEeecCCCccCCceEece
Q 022695 247 VELGFHVDDS------EVTLNVCLGREFSGGELFFRG 277 (293)
Q Consensus 247 ~~L~~H~D~S------evTlNV~LgkdFeGGgl~F~g 277 (293)
..|.+|+|.+ .+++=-|+-..=+||++.|.+
T Consensus 177 ~~l~~HtD~~y~~~pp~~~~L~c~~~~~~GG~t~~~d 213 (362)
T TIGR02410 177 LAIDMHTDGTYWDETPGLQLFHCLTHDGTGGETVLVD 213 (362)
T ss_pred CCccccccCCCCCCCCcceeEeeeecCCCCCceeeee
Confidence 4789999974 566666776666999999987
No 23
>TIGR01563 gp16_SPP1 phage head-tail adaptor, putative, SPP1 family. This family describes a small protein of about 100 amino acids found in bacteriophage and in bacterial prophage regions. Examples include gp9 of phage HK022 and gp16 of phage SPP1. This minor structural protein is suggested to be a head-tail adaptor protein (although the source of this annotation was not traced during construction of this model).
Probab=30.47 E-value=64 Score=24.70 Aligned_cols=57 Identities=16% Similarity=0.245 Sum_probs=35.8
Q ss_pred hhchhhhhcCCCCCCCCCcceeeeEEEEecCCCCCCcccccCCceeeEeecCCCccC
Q 022695 214 FIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSG 270 (293)
Q Consensus 214 yi~Pl~~~lfp~~~g~~ldsh~~FVVrY~~~~d~~L~~H~D~SevTlNV~LgkdFeG 270 (293)
.+.|++..-|-.-.+...+.-+-|.|||.++=+...+..+++-.+.|...+..+..+
T Consensus 35 ~v~~~~~~e~~~a~~~~~~~t~~~~iR~~~~i~~~~ri~~~g~~Y~I~~~~d~~~~~ 91 (101)
T TIGR01563 35 AVKPMSGQEFYRAGQEGVEITHVILIRYRKDVTNKMRVIYDGRIYTIGAVIDPSRTR 91 (101)
T ss_pred EeeecCcceeeecccccCceEEEEEEeccCCCChhhEEEECCEEEEEEeccCcccCc
Confidence 344444443322233333556779999999988888888888887775444444433
No 24
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=22.84 E-value=1e+02 Score=27.37 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=23.6
Q ss_pred eeeeEEEEecCCCCCCcccccCCcee-----eEeecCC
Q 022695 234 HHGFVVEYGMDRDVELGFHVDDSEVT-----LNVCLGR 266 (293)
Q Consensus 234 h~~FVVrY~~~~d~~L~~H~D~SevT-----lNV~Lgk 266 (293)
..+.|-.|.++ ..+++|.|++|.. +.|+||.
T Consensus 95 n~~LvN~Y~~G--d~mg~H~D~~e~~~~~pI~SvSLG~ 130 (169)
T TIGR00568 95 DACLVNRYAPG--ATLSLHQDRDEPDLRAPLLSVSLGL 130 (169)
T ss_pred CEEEEEeecCC--CccccccccccccCCCCEEEEeCCC
Confidence 46678889888 5899999987764 5666664
Done!