BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022696
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust.
Identities = 239/272 (87%), Positives = 254/272 (93%)
Query: 22 APPKRPIDVPFGRNYVPTWAFDHIKYFNGGSEIQLVLDKYTGTGFQSKGSYLFGHFSMHI 81
A ++P+DV FGRNYVPTWAFDHIKYFNGG+EIQL LDKYTGTGFQSKGSYLFGHFSM +
Sbjct: 7 AALRKPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQM 66
Query: 82 KMVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYLW 141
K+VPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNV+TGGKGD+EQRIYLW
Sbjct: 67 KLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLW 126
Query: 142 FDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWA 201
FDPTKEFH YSVLWNMY IVFLVDDVPIRVFKN KDLGV+FPFNQPMKIYSSLWNADDWA
Sbjct: 127 FDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWA 186
Query: 202 TRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYRRL 261
TRGGLEKTDWSKAPFIASY+ FH+DGCE SV AKFC TQG RWWDQK FQDLDA+QYRRL
Sbjct: 187 TRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRL 246
Query: 262 RWVRQKYTIYNYCNDRARFPTPSPECKRDRDI 293
WVRQKYTIYNYC DR+R+P+ PECKRDRDI
Sbjct: 247 SWVRQKYTIYNYCTDRSRYPSMPPECKRDRDI 278
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 197 bits (502), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 156/289 (53%), Gaps = 22/289 (7%)
Query: 10 LSALFLASGVISAPPKRPIDVP--------FGRNYVPTWAFDHIKYFNGGSEIQLVLDKY 61
L L +S + P P P F + Y W H + G + + LD
Sbjct: 13 LPILMFSSSCLGQGPPSPGYYPSSQITSLGFDQGYTNLWGPQHQRVDQG--SLTIWLDST 70
Query: 62 TGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTGQ 118
+G+GF+S Y G+F +IK+ G +AG +T+FYLS+ +HDEID EFLG G+
Sbjct: 71 SGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGK 130
Query: 119 PYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDL 178
PY LQTNV+ G GD+E RI+LWFDPT+++H Y++ W +I+F VDDVPIR + D
Sbjct: 131 PYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD- 189
Query: 179 GVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCE 238
FP +P+ +Y S+W+A WAT G K D+ PF+ Y+ F + C V A C
Sbjct: 190 -ATFPL-RPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEA-ASSCN 246
Query: 239 TQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTPSPEC 287
+ Q + Q + A + WV++ Y +YNYC+D R T +PEC
Sbjct: 247 PASVSPYGQLSQQQVAA-----MEWVQKNYMVYNYCDDPTRDHTLTPEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/268 (38%), Positives = 151/268 (56%), Gaps = 14/268 (5%)
Query: 23 PPKRPIDVPFGRNYVPTWAFDHIKYFNGGSEIQLVLDKYTGTGFQSKGSYLFGHFSMHIK 82
P + + F + Y W H + G + + LD +G+GF+S Y G+F +IK
Sbjct: 11 PSSQITSLGFDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIK 68
Query: 83 MVPGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVYTGGKGDKEQRIY 139
+ G +AG +T+FYLS+ +HDEID EFLG G+PY LQTNV+ G GD+E RI+
Sbjct: 69 LQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIH 128
Query: 140 LWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADD 199
LWFDPT+++H Y++ W +I+F VDDVPIR + D FP +P+ +Y S+W+A
Sbjct: 129 LWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPL-RPLWVYGSVWDASS 185
Query: 200 WATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLDAYQYR 259
WAT G K D+ PF+ Y+ F + C V A C + Q + Q + A
Sbjct: 186 WATENGKYKADYRYQPFVGKYEDFKLGSCTVEA-ASSCNPASVSPYGQLSQQQVAA---- 240
Query: 260 RLRWVRQKYTIYNYCNDRARFPTPSPEC 287
+ WV++ Y +YNYC+D R T +PEC
Sbjct: 241 -MEWVQKNYMVYNYCDDPTRDHTLTPEC 267
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 151/273 (55%), Gaps = 19/273 (6%)
Query: 23 PPKRPIDVPFGRNYVPTWAFDHIKYFNGGSEIQLVLDKYTGTGFQSKGSYLFGHFSMHIK 82
P + + F + Y W H + G + + LD +G+GF+S Y G+F +IK
Sbjct: 10 PSSQITSLGFDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIK 67
Query: 83 MVPGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVYTGGKGD-----K 134
+ G +AG +T+FYLS+ +HDEID EFLG G+PY LQTNV+ G GD +
Sbjct: 68 LQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGR 127
Query: 135 EQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSL 194
E RI+LWFDPT+++H Y++ W +I+F VDDVPIR + D FP +PM +Y S+
Sbjct: 128 ELRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPL-RPMWVYGSV 184
Query: 195 WNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLD 254
W+A WAT G K D+ PF+ Y+ F + C V A C + Q + Q +
Sbjct: 185 WDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEA-ASSCNPASVSPYGQLSQQQVA 243
Query: 255 AYQYRRLRWVRQKYTIYNYCNDRARFPTPSPEC 287
A + WV++ Y +YNYC+D R T +PEC
Sbjct: 244 A-----MEWVQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 190 bits (482), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 151/273 (55%), Gaps = 19/273 (6%)
Query: 23 PPKRPIDVPFGRNYVPTWAFDHIKYFNGGSEIQLVLDKYTGTGFQSKGSYLFGHFSMHIK 82
P + + F + Y W H + G + + LD +G+GF+S Y G+F +IK
Sbjct: 13 PSSQITSLGFDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIK 70
Query: 83 MVPGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVYTGGKGD-----K 134
+ G +AG +T+FYLS+ +HDEID EFLG G+PY LQTNV+ G GD +
Sbjct: 71 LQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGR 130
Query: 135 EQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSL 194
E RI+LWFDPT+++H Y++ W +I+F VDDVPIR + D FP +P+ +Y S+
Sbjct: 131 EMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPL-RPLWVYGSV 187
Query: 195 WNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQGKRWWDQKAFQDLD 254
W+A WAT G K D+ PF+ Y+ F + C V A C + Q + Q +
Sbjct: 188 WDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEA-ASSCNPASVSPYGQLSQQQVA 246
Query: 255 AYQYRRLRWVRQKYTIYNYCNDRARFPTPSPEC 287
A + WV++ Y +YNYC+D R T +PEC
Sbjct: 247 A-----MEWVQKNYMVYNYCDDPTRDHTLTPEC 274
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 24/172 (13%)
Query: 40 WAFDHIKYFNGGSEIQLVL-----DKYTGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTA 94
WAFDH+ + G E++L L +K+ G G QS +Y +G + +++K P + G V+A
Sbjct: 21 WAFDHVSMTSLG-EMRLSLTSPSYNKFDGGGNQSVQTYGYGLYEVNMK--PAKNVGIVSA 77
Query: 95 FYLSSQNSEH---DEIDFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTY 151
FY S+ ++ DEID EFLG T + +Q N YT G G+ E+ + L FD +HTY
Sbjct: 78 FYTSTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYHTY 134
Query: 152 SVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLW---NADDW 200
+ W I + VD K++ + P P KIY SLW D+W
Sbjct: 135 AFDWQPNSIKWYVDG----QLKHTAT--TQIP-QTPGKIYMSLWAGAGVDEW 179
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 20/171 (11%)
Query: 39 TWAFDHIKYFNGGSEIQLVLDKYTGTGF---QSKGSYLFGHFSMHIKMVPGDSAGTVTAF 95
TW +++ + N G +++L L F + + + ++G+ + M P + G V++F
Sbjct: 31 TWRANNVNFTNDG-KLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPAKNTGIVSSF 89
Query: 96 YL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYS 152
+ + ++ DEID EFLG T + +Q N YT G G E+ I L FD +K FHTY+
Sbjct: 90 FTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYA 146
Query: 153 VLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNA---DDW 200
W I + VD V K++ + + P KI +LWN DDW
Sbjct: 147 FDWQPGYIKWYVDG----VLKHTATANIP---STPGKIMMNLWNGTGVDDW 190
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 20/171 (11%)
Query: 39 TWAFDHIKYFNGGSEIQLVLDKYTGTGF---QSKGSYLFGHFSMHIKMVPGDSAGTVTAF 95
TW +++ + N G +++L L F + + + ++G+ + M P + G V++F
Sbjct: 33 TWRANNVNFTNDG-KLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPAKNTGIVSSF 91
Query: 96 YL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYS 152
+ + ++ DEID EFLG T + +Q N YT G G E+ I L FD +K FHTY+
Sbjct: 92 FTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYA 148
Query: 153 VLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNA---DDW 200
W I + VD V K++ + + P KI +LWN DDW
Sbjct: 149 FDWQPGYIKWYVDG----VLKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 16/134 (11%)
Query: 73 LFGHFSMHIKMVPGDSAGTVTAFYL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVYTG 129
++G+ + M P + G V++F+ + ++ DEID EFLG T + +Q N YT
Sbjct: 11 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTN 67
Query: 130 GKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMK 189
G G E+ I L FD +K FHTY+ W I + VD V K++ + + P K
Sbjct: 68 GVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP---STPGK 120
Query: 190 IYSSLWNA---DDW 200
I +LWN DDW
Sbjct: 121 IMMNLWNGTGVDDW 134
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 16/134 (11%)
Query: 73 LFGHFSMHIKMVPGDSAGTVTAFYL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVYTG 129
++G+ + M P + G V++F+ + ++ DEID EFLG T + +Q N YT
Sbjct: 11 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTN 67
Query: 130 GKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMK 189
G G E+ I L FD +K FHTY+ W I + VD V K++ + + P K
Sbjct: 68 GVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP---STPGK 120
Query: 190 IYSSLWNA---DDW 200
I +LWN DDW
Sbjct: 121 IMMNLWNGTGVDDW 134
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 16/134 (11%)
Query: 73 LFGHFSMHIKMVPGDSAGTVTAFYL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVYTG 129
++G+ + M P + G V++F+ + ++ DEID EFLG T + +Q N YT
Sbjct: 11 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTN 67
Query: 130 GKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMK 189
G G E+ I L FD +K FHTY+ W I + VD V K++ + + P K
Sbjct: 68 GVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP---STPGK 120
Query: 190 IYSSLWNA---DDW 200
I +LWN DDW
Sbjct: 121 IMMNLWNGTGVDDW 134
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 20/171 (11%)
Query: 39 TWAFDHIKYFNGGSEIQLVLDKYTGTGF---QSKGSYLFGHFSMHIKMVPGDSAGTVTAF 95
TW +++ + N G +++L L F + + + ++G+ + M P + G V++F
Sbjct: 33 TWRANNVNFTNDG-KLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPAKNTGIVSSF 91
Query: 96 YL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYS 152
+ + ++ D+ID +FLG T + +Q N YT G G E+ I L FD +K FHTY+
Sbjct: 92 FTYTGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYA 148
Query: 153 VLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNA---DDW 200
W I + VD V K++ + + P KI +LWN DDW
Sbjct: 149 FDWQPGYIKWYVDG----VLKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 74 FGHFSMHIKMVPGDSAGTVTAFYLSSQNSEH---DEIDFEFLGNRTGQPYILQTNVYTGG 130
+G+ ++M P + G V++F+ + ++ DEID EFLG T + +Q N YT G
Sbjct: 94 YGYGLYEVRMKPAKNTGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNG 150
Query: 131 KGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKI 190
G+ E+ + L FD +HTY+ W I + VD N + P P KI
Sbjct: 151 AGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDGQLKHTATN------QIP-TTPGKI 203
Query: 191 YSSLWNA---DDW 200
+LWN D+W
Sbjct: 204 MMNLWNGTGVDEW 216
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 18/146 (12%)
Query: 61 YTGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAFYLSS---QNSEHDEIDFEFLGNRTG 117
Y G ++++ + +G + ++M P + G V++F+ + + DEID EFLG T
Sbjct: 79 YAGAEYRTRDKFGYGLY--QVRMKPAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTT 136
Query: 118 QPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKD 177
+ +Q N YT G+ E L FD +++FH Y+ W I +LVD V++ D
Sbjct: 137 K---VQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDGE--EVYRAYDD 191
Query: 178 LGVRFPFNQPMKIYSSLW---NADDW 200
+ V P KI ++W D+W
Sbjct: 192 IPV-----HPGKIMLNIWPGIGVDEW 212
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 16/119 (13%)
Query: 88 SAGTVTAFYL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDP 144
+ G V++F+ + ++ DEID EFLG T + +Q N YT G G E+ I L FD
Sbjct: 1 NTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDA 57
Query: 145 TKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNA---DDW 200
+K FHTY+ W I + VD V K++ + + P KI +LWN DDW
Sbjct: 58 SKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP---STPGKIMMNLWNGTGVDDW 109
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 74 FGHFSMHIKMVPGDSAGTVTAFYLSSQNSEH---DEIDFEFLGNRTGQPYILQTNVYTGG 130
+G+ + M P + G V++F+ + ++ DEID EFLG T + +Q N YT G
Sbjct: 70 YGYGLYEVNMKPAKNVGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNG 126
Query: 131 KGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKI 190
G+ E+ + L FD +HTY+ W I + VD + + P P KI
Sbjct: 127 VGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG------QLKHTATTQIP-QTPGKI 179
Query: 191 YSSLWNA---DDW 200
+LWN D+W
Sbjct: 180 MMNLWNGAGVDEW 192
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Query: 56 LVLDKYTGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQNSEHD------EIDF 109
+ + ++G + Y +G F +KM ++GTV++ +L SE E+D
Sbjct: 2 VSMKDFSGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDI 59
Query: 110 EFLGNRTGQPYILQTNVYTGGKG-DKEQRIYLWFDPTKE--FHTYSVLWNMYQIVFLVDD 166
E LG P Q+N+ TG G K + P + FHTY + W + + VD
Sbjct: 60 EVLGK---SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 167 VPIR 170
+R
Sbjct: 117 QEVR 120
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 74 FGHFSMHIKMVPGDSAGTVTAFYLSSQNSEHD------EIDFEFLGNRTGQPYILQTNVY 127
+G F +KM ++GTV++ +L SE E+D E LG P Q+N+
Sbjct: 18 YGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGKN---PGSFQSNII 72
Query: 128 TGGKGDKEQRI-YLWFDPTKE--FHTYSVLWNMYQIVFLVDDVPIR 170
TG G ++ I + P + FHTY + W + + VD +R
Sbjct: 73 TGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 118
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 74 FGHFSMHIKMVPGDSAGTVTAFYLSSQNSEHD------EIDFEFLGNRTGQPYILQTNVY 127
+G F +KM ++GTV++ +L SE E+D E LG P Q+N+
Sbjct: 17 YGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGKN---PGSFQSNII 71
Query: 128 TGGKG-DKEQRIYLWFDPTKE--FHTYSVLWNMYQIVFLVDDVPIR 170
TG G K + P + FHTY + W + + VD +R
Sbjct: 72 TGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 117
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 74 FGHFSMHIKMVPGDSAGTVTAFYLSSQNSEHD------EIDFEFLGNRTGQPYILQTNVY 127
+G F +KM ++GTV++ L SE E+D E LG P Q+N+
Sbjct: 18 YGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGKN---PGSFQSNII 72
Query: 128 TGGKG-DKEQRIYLWFDPTKE--FHTYSVLWNMYQIVFLVDDVPIR 170
TG G K + P + FHTY + W + + VD +R
Sbjct: 73 TGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 118
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 132 GDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIY 191
G E+ I L FD +K FHTY+ W I + VD V K++ + + P KI
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP---STPGKIM 54
Query: 192 SSLWNA---DDW 200
+LWN DDW
Sbjct: 55 MNLWNGTGVDDW 66
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 39 TWAFDHIKYFNGGSEIQLVLDKYTGTGF---QSKGSYLFGHFSMHIKMVPGDSAGTVTAF 95
TW +++ + N G +++L L F + + + ++G+ + M P + G V++F
Sbjct: 121 TWRANNVNFTNDG-KLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPAKNTGIVSSF 179
Query: 96 YL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVYTGG 130
+ + ++ DEID EFLG T + +Q N YT G
Sbjct: 180 FTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG 214
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
Query: 74 FGHFSMHIKMVPGDSAGTVTAFYLSSQNSEHD------EIDFEFLGNRTGQPYILQTNVY 127
+G F K ++GTV++ +L SE E+D E LG P Q+N+
Sbjct: 20 YGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGKN---PGSFQSNII 74
Query: 128 TGGKG-DKEQRIYLWFDPTKE--FHTYSVLWNMYQIVFLVDDVPIR 170
TG G K + P + FHTY + W + + VD +R
Sbjct: 75 TGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 120
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
Query: 74 FGHFSMHIKMVPGDSAGTVTAFYLSSQNSEHD------EIDFEFLGNRTGQPYILQTNVY 127
+G F K ++GTV++ +L SE E+D E LG P Q+N+
Sbjct: 17 YGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGKN---PGSFQSNII 71
Query: 128 TGGKG-DKEQRIYLWFDPTKE--FHTYSVLWNMYQIVFLVDDVPIR 170
TG G K + P + FHTY + W + + VD +R
Sbjct: 72 TGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 117
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 105 DEIDFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDP-----TKEFHTYSVLWNMYQ 159
D + + + N +P+++ +++ G E + P FHT++V W
Sbjct: 120 DSGEIDIMENIGREPHLVHGSLHGPGYFGGEPLTGSYMHPQGWSFADTFHTFAVDWRPGS 179
Query: 160 IVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDW 200
I + VD V + + ++ G + F+QP + ++ DW
Sbjct: 180 ITWSVDGVAYQTYTSADTRGNPWVFDQPFFMILNVAVGGDW 220
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 23/159 (14%)
Query: 67 QSKGSYLFGHFSMHIKMVPGDSAGTVTAFYL--------SSQNSEHDEIDF-EFLGNRTG 117
+ K S+ +G F + ++ G GT A ++ S+ ++ EID E +G
Sbjct: 78 RGKASWTYGRFEIRARLPSG--RGTWPAIWMLPDRQTYGSAYWPDNGEIDIAEHVGF--- 132
Query: 118 QPYILQTNVYTGGKGD--KEQRIYLWFDPTK--EFHTYSVLWNMYQIVFLVDD-----VP 168
P ++ V+T QR PT +FH Y++ W +I + VDD P
Sbjct: 133 NPDVVHGTVHTKAYNHLLGTQRGGSIRVPTARTDFHVYAIEWTPEEIRWFVDDSLYYRFP 192
Query: 169 IRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLE 207
N + +PF+QP + ++ W + G++
Sbjct: 193 NERLTNPEADWRHWPFDQPFHLIMNIAVGGTWGGQQGVD 231
>pdb|1NRK|A Chain A, Ygfz Protein
Length = 328
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 182 FPFNQPM---KIYSSLWNADDWA--TRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKF 236
FP QP ++ +L DDWA T G + + + A D + A
Sbjct: 9 FPPRQPTASARLPLTLXTLDDWALATITGADSEKYXQGQVTADVSQXAEDQ---HLLAAH 65
Query: 237 CETQGKRWWDQKAFQDLDAYQYRRLRWVRQ-------KYTIYN 272
C+ +GK W + + F+D D + + R VR+ KY +++
Sbjct: 66 CDAKGKXWSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFS 108
>pdb|1VLY|A Chain A, Crystal Structure Of A Putative Aminomethyltransferase
(Ygfz) From Escherichia Coli At 1.30 A Resolution
Length = 338
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 182 FPFNQPM---KIYSSLWNADDWA--TRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKF 236
FP QP ++ +L DDWA T G + + + A D + A
Sbjct: 18 FPPRQPTASARLPLTLXTLDDWALATITGADSEKYXQGQVTADVSQXAEDQ---HLLAAH 74
Query: 237 CETQGKRWWDQKAFQDLDAYQYRRLRWVRQ-------KYTIYN 272
C+ +GK W + + F+D D + + R VR+ KY +++
Sbjct: 75 CDAKGKXWSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFS 117
>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase
Length = 314
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 59 DKYTGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAFYLS------SQNSEHDEI 107
+K G GF+ G GH+ KM+ +AG YL+ +Q E DEI
Sbjct: 28 EKSAGIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIIIYLADLAAYLNQKGELDEI 82
>pdb|2OOJ|A Chain A, Crystal Structure Of A Protein With Unknown Function From
Duf3224 Family (So_1590) From Shewanella Oneidensis Mr-1
At 1.84 A Resolution
pdb|2OOJ|B Chain B, Crystal Structure Of A Protein With Unknown Function From
Duf3224 Family (So_1590) From Shewanella Oneidensis Mr-1
At 1.84 A Resolution
Length = 141
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 16/63 (25%)
Query: 54 IQLVLDKYTGTGFQSKGSYLFGHFS--------MHIKMVPGDSAGTVTAFY----LSSQN 101
I+ V+ K G +GS++ HF +H+++VP AG +T Y +S +N
Sbjct: 67 IEQVVGKLCG----RQGSFVLQHFGIXTDGQNRLHLEVVPHSGAGELTGLYGTXAISIEN 122
Query: 102 SEH 104
+H
Sbjct: 123 GQH 125
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 143 DPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKD 177
DPT E+H Y++ W + F D+ +V S D
Sbjct: 209 DPTSEYHIYAMEWTPTALKFYYDNELFKVIYGSPD 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,273,414
Number of Sequences: 62578
Number of extensions: 473561
Number of successful extensions: 799
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 32
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)