Query 022696
Match_columns 293
No_of_seqs 286 out of 1724
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:29:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 1.1E-85 2.4E-90 608.8 33.9 280 8-290 6-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 6.6E-84 1.4E-88 592.6 32.2 259 29-287 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 1.1E-43 2.3E-48 316.1 24.8 176 39-228 13-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 5.7E-38 1.2E-42 280.3 24.8 172 38-226 27-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 2.2E-35 4.9E-40 256.1 19.1 174 34-224 3-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 3.2E-33 6.8E-38 247.0 22.9 172 37-226 24-210 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 6.7E-33 1.4E-37 254.7 22.5 177 42-226 57-257 (258)
8 cd08023 GH16_laminarinase_like 100.0 2.6E-32 5.7E-37 246.4 22.0 177 39-226 34-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 3.6E-30 7.9E-35 238.0 21.9 170 42-226 43-268 (269)
10 cd02182 GH16_Strep_laminarinas 100.0 6E-30 1.3E-34 235.2 21.0 185 39-226 42-258 (259)
11 cd02180 GH16_fungal_KRE6_gluca 100.0 5.9E-30 1.3E-34 239.3 19.6 181 39-226 37-294 (295)
12 cd08024 GH16_CCF Coelomic cyto 100.0 6.9E-28 1.5E-32 228.9 19.5 139 61-201 99-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 4.2E-28 9.2E-33 229.5 17.3 135 62-198 97-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 3.4E-25 7.3E-30 211.8 19.2 156 37-201 73-242 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 2.1E-21 4.6E-26 136.4 4.2 50 237-287 1-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.6 1.6E-15 3.5E-20 149.5 14.0 187 43-239 161-464 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.6 9.8E-15 2.1E-19 135.9 13.4 151 44-201 43-251 (293)
18 PF09264 Sial-lect-inser: Vibr 94.4 0.42 9.1E-06 42.3 9.8 92 60-172 15-120 (198)
19 PF13385 Laminin_G_3: Concanav 93.1 3 6.4E-05 33.3 12.2 67 144-228 83-149 (157)
20 smart00560 LamGL LamG-like jel 90.9 7.7 0.00017 31.6 14.6 70 144-230 59-130 (133)
21 PF06439 DUF1080: Domain of Un 90.1 6.3 0.00014 33.4 11.6 104 61-175 41-156 (185)
22 smart00210 TSPN Thrombospondin 85.1 18 0.00039 31.4 11.5 88 76-173 55-144 (184)
23 smart00159 PTX Pentraxin / C-r 82.5 18 0.00039 32.0 10.6 73 144-227 88-162 (206)
24 PF10287 DUF2401: Putative TOS 80.3 5.7 0.00012 36.4 6.6 77 76-158 102-207 (235)
25 PF14099 Polysacc_lyase: Polys 71.3 42 0.00091 29.5 9.7 55 139-197 145-204 (224)
26 cd00152 PTX Pentraxins are pla 69.1 79 0.0017 27.7 17.5 73 144-227 88-162 (201)
27 PF02210 Laminin_G_2: Laminin 65.0 61 0.0013 24.9 9.8 75 145-227 53-127 (128)
28 cd00110 LamG Laminin G domain; 59.7 88 0.0019 24.9 17.2 85 73-171 20-105 (151)
29 PF09224 DUF1961: Domain of un 56.7 38 0.00082 30.7 6.4 58 147-225 160-218 (218)
30 smart00282 LamG Laminin G doma 50.4 69 0.0015 25.4 6.7 27 145-171 61-87 (135)
31 PF02973 Sialidase: Sialidase, 47.9 2E+02 0.0044 25.5 13.8 135 71-230 31-177 (190)
32 PF11948 DUF3465: Protein of u 39.2 1.8E+02 0.004 24.4 7.5 70 41-127 33-112 (131)
33 cd00070 GLECT Galectin/galacto 37.0 1.2E+02 0.0026 24.4 6.1 48 125-173 56-104 (127)
34 PF00354 Pentaxin: Pentaxin fa 30.3 3.7E+02 0.0081 23.5 10.2 71 144-225 82-154 (195)
35 KOG1834 Calsyntenin [Extracell 29.2 69 0.0015 33.9 4.1 52 145-201 441-492 (952)
36 cd06526 metazoan_ACD Alpha-cry 28.4 1.4E+02 0.0029 22.2 4.7 53 40-95 18-70 (83)
37 cd06482 ACD_HspB10 Alpha cryst 24.5 1.2E+02 0.0026 23.3 3.8 53 42-94 21-73 (87)
38 PF07172 GRP: Glycine rich pro 23.5 47 0.001 26.2 1.4 9 13-21 16-24 (95)
39 KOG3049 Succinate dehydrogenas 22.1 60 0.0013 29.7 1.9 23 241-264 205-227 (288)
40 PF07691 PA14: PA14 domain; I 22.0 1.3E+02 0.0029 23.9 3.9 28 144-172 57-84 (145)
41 cd06470 ACD_IbpA-B_like Alpha- 21.2 1.5E+02 0.0033 22.4 3.9 46 40-86 22-71 (90)
42 PF06832 BiPBP_C: Penicillin-B 21.2 1.1E+02 0.0023 23.0 3.0 34 159-194 44-77 (89)
43 KOG4352 Fas-mediated apoptosis 21.1 1.3E+02 0.0029 26.0 3.7 38 134-172 91-128 (187)
44 KOG1691 emp24/gp25L/p24 family 20.4 6.5E+02 0.014 22.8 8.5 56 53-113 61-120 (210)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=1.1e-85 Score=608.83 Aligned_cols=280 Identities=45% Similarity=0.894 Sum_probs=255.8
Q ss_pred HHHHHHHHhhhhccCCCCCCcCCCcccCCcccccCCCeEEecCCcEEEEEEeCCCccEEEEccceEEEEEEEEEEecCCC
Q 022696 8 LCLSALFLASGVISAPPKRPIDVPFGRNYVPTWAFDHIKYFNGGSEIQLVLDKYTGTGFQSKGSYLFGHFSMHIKMVPGD 87 (293)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~tga~i~Sk~~~~yG~~eariKlp~g~ 87 (293)
.||+|++++++++- ..++..+|.++|..+|+.+|+.+.++|..|+|+||+.+|++|+||+.|+||+||+|||||+|+
T Consensus 6 ~~~~~~~~~~~~~~---~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~ 82 (291)
T PLN03161 6 TLLVALFAALAAFD---RSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGN 82 (291)
T ss_pred HHHHHHHHHHHhcC---CCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCC
Confidence 34555666666543 223367899999999999999998888889999999999999999999999999999999988
Q ss_pred CCceEEEEEEeecCCCCCeEEEEEcCCCCCCceEEEcccccCCCCCcceeEeccCCCCCCcEEEEEEEcCCeEEEEECCe
Q 022696 88 SAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDV 167 (293)
Q Consensus 88 s~G~v~AFwl~~~~~~~~EIDiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~ 167 (293)
++|+||||||++.++.+|||||||||+++++++++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||+
T Consensus 83 saG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~ 162 (291)
T PLN03161 83 SAGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGT 162 (291)
T ss_pred CCCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCE
Confidence 89999999999977789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEEEeeeeeCCC--CCccccC-Cccc
Q 022696 168 PIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVN--AKFCETQ-GKRW 244 (293)
Q Consensus 168 ~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~~~~--~~~c~~~-~~~~ 244 (293)
+||++++.+..|.+||+++||+|++|||+|++|||+||++||||+++||+|.|++|+++||.++++ ...|... +..|
T Consensus 163 ~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~~~ 242 (291)
T PLN03161 163 PIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPSNW 242 (291)
T ss_pred EEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCcccc
Confidence 999999877778899988899999999999999999999999999999999999999999997643 3479754 4679
Q ss_pred ccccccCCCCHHHHHHHHHHhhcCeeeecccCCCCCCC-CCCCCcCC
Q 022696 245 WDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPT-PSPECKRD 290 (293)
Q Consensus 245 ~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~-~~~ec~~~ 290 (293)
|+++.|++|+.+|+++|+|||+||||||||+|++|||+ +||||.++
T Consensus 243 ~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 243 WTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred ccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 99999999999999999999999999999999999999 89999875
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=6.6e-84 Score=592.62 Aligned_cols=259 Identities=59% Similarity=1.148 Sum_probs=245.6
Q ss_pred CCCcccCCcccccCCCeEEecCCcEEEEEEeCCCccEEEEccceEEEEEEEEEEecCCCCCceEEEEEEeecC-CCCCeE
Q 022696 29 DVPFGRNYVPTWAFDHIKYFNGGSEIQLVLDKYTGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQN-SEHDEI 107 (293)
Q Consensus 29 ~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~tga~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~-~~~~EI 107 (293)
+++|.++|.++|+++|+++.++|+.|+|+||+++|++|.||..|+||+||||||||+|+++|+||||||++.+ +.++||
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~EI 82 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDEI 82 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCeE
Confidence 4689999999999999999888899999999999999999999999999999999998889999999999987 889999
Q ss_pred EEEEcCCCCCCceEEEcccccCCCCCcceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeEEEEEEeccCCCCCCCCCCC
Q 022696 108 DFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQP 187 (293)
Q Consensus 108 DiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~P 187 (293)
|||+||+.+|+|+++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..+.+||+++|
T Consensus 83 D~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 162 (263)
T cd02176 83 DFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQP 162 (263)
T ss_pred EEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccce
Confidence 99999999999999999999999989999999999999999999999999999999999999999988777889997799
Q ss_pred cEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEEEeeeeeCCCCCccccCC-cccccccccCCCCHHHHHHHHHHhh
Q 022696 188 MKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVDGCEVSVNAKFCETQG-KRWWDQKAFQDLDAYQYRRLRWVRQ 266 (293)
Q Consensus 188 m~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~~~~~~~c~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~ 266 (293)
|+|++|||+||+|||+||++++||+++||+|.|++|+|.+|.+++....|.... ..||+.+.+++|+++|+++|+|||+
T Consensus 163 m~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 242 (263)
T cd02176 163 MGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAMEWVRR 242 (263)
T ss_pred EEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCCccccccccccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876555676433 6799999999999999999999999
Q ss_pred cCeeeecccCCCCCCCCCCCC
Q 022696 267 KYTIYNYCNDRARFPTPSPEC 287 (293)
Q Consensus 267 ~~~~y~yc~d~~r~~~~~~ec 287 (293)
||||||||+|++|||.+||||
T Consensus 243 ~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 243 NYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred CCEEEecCCCCCcCCCCcCCC
Confidence 999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.1e-43 Score=316.10 Aligned_cols=176 Identities=30% Similarity=0.562 Sum_probs=153.6
Q ss_pred cccCCCeEEecCCcEEEEEEeCC-CccEEEEccceEEEEEEEEEEecCCCCCceEEEEEEeecCCCCCeEEEEEcCCCCC
Q 022696 39 TWAFDHIKYFNGGSEIQLVLDKY-TGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTG 117 (293)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ld~~-tga~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~~~~~EIDiE~lG~~~g 117 (293)
+..+++|.+.. .+|+|+|++. +|++|+||+.|+||+||||||+|.+ +|+||||||+++ .++|||||++|++
T Consensus 13 ~~~~~~~~~~~--~~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G~~-- 84 (203)
T cd02183 13 TVTSGTVDYDD--DGASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVGGD-- 84 (203)
T ss_pred EecCCcEeECC--CeEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecCCC--
Confidence 34567888753 3499999987 7999999999999999999999998 899999999985 5799999999964
Q ss_pred CceEEEcccccCCCC---CcceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeEEEEEEeccC-CCCCCCCCCCcEEEEE
Q 022696 118 QPYILQTNVYTGGKG---DKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKD-LGVRFPFNQPMKIYSS 193 (293)
Q Consensus 118 ~p~~vqtN~~~~g~g---~re~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~-~g~~~P~~~Pm~l~ln 193 (293)
+..+|+|++.+|.. ++++.+.+.++++++||+|+|+|+|++|+|||||+++|++++.+. .+.+|| ++||+|++|
T Consensus 85 -~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p-~~P~~l~ln 162 (203)
T cd02183 85 -LTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYP-QTPMRLQIG 162 (203)
T ss_pred -CCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCC-CCCcEEEEE
Confidence 56899999977654 456778888999999999999999999999999999999987542 356799 999999999
Q ss_pred eecCCC---------ccCCCCCcccCCCCCCEEEEEeEEEEeee
Q 022696 194 LWNADD---------WATRGGLEKTDWSKAPFIASYKGFHVDGC 228 (293)
Q Consensus 194 lw~gg~---------Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c 228 (293)
+|+||+ || || ++||+.+||+|.|++|+|.+.
T Consensus 163 ~W~gg~~~~~~g~~~Wa--Gg--~~d~~~~P~~~~vd~v~v~~~ 202 (203)
T cd02183 163 IWAGGDPSNAPGTIEWA--GG--ETDYDKGPFTMYVKSVTVTDY 202 (203)
T ss_pred EecCCCccccCCcccCC--CC--ccCCCCCCEEEEEEEEEEEeC
Confidence 999985 99 77 599999999999999999754
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=5.7e-38 Score=280.29 Aligned_cols=172 Identities=33% Similarity=0.615 Sum_probs=147.6
Q ss_pred ccccCCCeEEecCCcEEEEEEeCC-------CccEEEEccceEEEEEEEEEEecCCCCCceEEEEEEeecC---CCCCeE
Q 022696 38 PTWAFDHIKYFNGGSEIQLVLDKY-------TGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQN---SEHDEI 107 (293)
Q Consensus 38 ~~w~~~nv~~~~~G~~l~L~ld~~-------tga~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~---~~~~EI 107 (293)
.+|.++||.+. +| .|+|++.+. +||+|.|+.+|+||+||+|||+|.+ +|+|+||||++.+ +.++||
T Consensus 27 ~~~~~~nv~v~-~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~EI 102 (212)
T cd02175 27 CTWSADNVEFS-DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDEI 102 (212)
T ss_pred eeEccccEEEE-CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCEE
Confidence 47889999997 45 499998653 5899999999999999999999987 8999999999742 457999
Q ss_pred EEEEcCCCCCCceEEEcccccCCCCCcceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeEEEEEEeccCCCCCCCCCCC
Q 022696 108 DFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQP 187 (293)
Q Consensus 108 DiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~P 187 (293)
|||++|++. ..+|+|+|.++.+..+..+.+.+|++++||+|+|+|+|++|+|||||+++++++..+ ..+| ++|
T Consensus 103 DiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p-~~p 175 (212)
T cd02175 103 DIEFLGKDT---TKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIP-DTP 175 (212)
T ss_pred EEEEccCCC---CEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCC-CCC
Confidence 999999763 468889888877666777788899999999999999999999999999999997643 3688 899
Q ss_pred cEEEEEeecCC---CccCCCCCcccCCCCCCEEEEEeEEEEe
Q 022696 188 MKIYSSLWNAD---DWATRGGLEKTDWSKAPFIASYKGFHVD 226 (293)
Q Consensus 188 m~l~lnlw~gg---~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (293)
|+|++|+|.|+ +|+ | ++|. .+|+.|+||+||+.
T Consensus 176 ~~i~~n~w~~~~~~~W~---G--~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 176 GKIMMNLWPGDGVDDWL---G--PFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred cEEEEEEEcCCCCCCcC---C--cCCC-CCCeEEEEEEEEEe
Confidence 99999999985 598 4 3676 88999999999984
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=2.2e-35 Score=256.14 Aligned_cols=174 Identities=39% Similarity=0.669 Sum_probs=149.7
Q ss_pred cCCcccccCCCeEEecCCcEEEEEEeC-----CCccEEEEccceEEEEEEEEEEecCCCCCceEEEEEEeecC--CCCCe
Q 022696 34 RNYVPTWAFDHIKYFNGGSEIQLVLDK-----YTGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQN--SEHDE 106 (293)
Q Consensus 34 ~~f~~~w~~~nv~~~~~G~~l~L~ld~-----~tga~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~--~~~~E 106 (293)
+.+..+|.++||.+.+ |..|+|++++ .+|++|.|+..++||+||+|||++.+ .|+|+||||.+.+ +.++|
T Consensus 3 ~~~~~~~~~~nv~~~~-g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~E 79 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVED-GGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGGE 79 (185)
T ss_dssp CTEEEEETCCGEEEET-TSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTEE
T ss_pred CceEEeeCCCcEEEcC-CCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchhh
Confidence 4678899999999965 4469999998 68999999999999999999999887 8999999997532 78999
Q ss_pred EEEEEcCCCCCCceEEEcccccCCCCCc--ceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeEEEEEEeccCCCCCCCC
Q 022696 107 IDFEFLGNRTGQPYILQTNVYTGGKGDK--EQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPF 184 (293)
Q Consensus 107 IDiE~lG~~~g~p~~vqtN~~~~g~g~r--e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~ 184 (293)
||||++|++.. .+|+|+|..+.+.. +..+.+.+++.++||+|+|+|+|++|+|||||++++++......+.++|+
T Consensus 80 IDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 99999998654 59999998887764 56777788999999999999999999999999999999887654446895
Q ss_pred CCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEE
Q 022696 185 NQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFH 224 (293)
Q Consensus 185 ~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~ 224 (293)
..||++.+++|.|++|++..| .|+||+||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 599999999999999885444 58888876
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=3.2e-33 Score=246.96 Aligned_cols=172 Identities=34% Similarity=0.568 Sum_probs=142.3
Q ss_pred cccccCCCeEEecCCcEEEEEEeC------CCccEEEE-ccceEEEEEEEEEEecCCCCCceEEEEEEeecC---CCCCe
Q 022696 37 VPTWAFDHIKYFNGGSEIQLVLDK------YTGTGFQS-KGSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQN---SEHDE 106 (293)
Q Consensus 37 ~~~w~~~nv~~~~~G~~l~L~ld~------~tga~i~S-k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~---~~~~E 106 (293)
...|.++||.+.++| .|.|++.+ .++|+|.| ++.++||+||+|||++.+ .|+|+||||++.+ +..+|
T Consensus 24 ~~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 346789999997646 48888865 36899999 999999999999999987 8999999999986 56999
Q ss_pred EEEEEcCCCCCCceEEEcccccCCCC-----CcceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeEEEEEEeccCCCCC
Q 022696 107 IDFEFLGNRTGQPYILQTNVYTGGKG-----DKEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVR 181 (293)
Q Consensus 107 IDiE~lG~~~g~p~~vqtN~~~~g~g-----~re~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~ 181 (293)
||||++|++ +..+++++|..+.+ .....+.+.+++.++||+|+|+|+|+.|+|||||++++++.+.
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------ 171 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------ 171 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------
Confidence 999999976 34577777654432 2344555667788999999999999999999999999998642
Q ss_pred CCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEEEe
Q 022696 182 FPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVD 226 (293)
Q Consensus 182 ~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (293)
+| ++||+|+||+|.+++|+. . .+....|..|.|++|||.
T Consensus 172 ~p-~~p~~i~ln~~~~~~~~~--~---~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 172 VP-DDPMNIILNLWSDGGWWW--G---GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred CC-CCCcEEEEEEEECCCCcc--c---CCCCCCCcEEEEEEEEEC
Confidence 67 899999999999999873 2 344678999999999973
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=6.7e-33 Score=254.66 Aligned_cols=177 Identities=23% Similarity=0.247 Sum_probs=134.9
Q ss_pred CCCeEEecCCcEEEEEEeCC-----------CccEEEEccceEEEEEEEEEEecCCCCCceEEEEEEeecC-CCCCeEEE
Q 022696 42 FDHIKYFNGGSEIQLVLDKY-----------TGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQN-SEHDEIDF 109 (293)
Q Consensus 42 ~~nv~~~~~G~~l~L~ld~~-----------tga~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~-~~~~EIDi 109 (293)
++|+.+. +| .|.|++.+. ++|+|.||+.++||+||||||+|.+ +.+|||||++.+ +.++||||
T Consensus 57 ~~nv~v~-~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~---~~~pAfW~~~~~~~~~gEIDI 131 (258)
T cd02178 57 ADNVSVE-DG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL---PMSSAFWLLSDTKDSTTEIDI 131 (258)
T ss_pred cCCeEEE-CC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC---CccceEEEccCCCCCCCcEEh
Confidence 4677774 56 499988643 4799999999999999999999976 358999999975 68999999
Q ss_pred -EEcCCCC--CCceEEEccccc--CCC--C-Cc---ceeEeccCCCCCCcEEEEEEEc-CCeEEEEECCeEEEEEEeccC
Q 022696 110 -EFLGNRT--GQPYILQTNVYT--GGK--G-DK---EQRIYLWFDPTKEFHTYSVLWN-MYQIVFLVDDVPIRVFKNSKD 177 (293)
Q Consensus 110 -E~lG~~~--g~p~~vqtN~~~--~g~--g-~r---e~~~~l~fdp~~dfHtY~i~Wt-p~~I~fyVDg~~vr~~~~~~~ 177 (293)
|++|+.. ..+..+|++++. .+. + .+ ...+...++++++||+|+|+|+ |++|+|||||++++++++.+.
T Consensus 132 ~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~~ 211 (258)
T cd02178 132 LEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSEI 211 (258)
T ss_pred hhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCccc
Confidence 9999763 223467777542 221 1 11 2334455677899999999999 999999999999999987543
Q ss_pred CCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEEEe
Q 022696 178 LGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVD 226 (293)
Q Consensus 178 ~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (293)
...+||++||+|+||+++|| |++..+. ...-...|..|.||+|||.
T Consensus 212 -~~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 212 -TDGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDSKNTFYVDYVRVY 257 (258)
T ss_pred -CcCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCCCCeEEEEEEEEe
Confidence 34578899999999999998 9832111 1122346999999999985
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=2.6e-32 Score=246.37 Aligned_cols=177 Identities=26% Similarity=0.419 Sum_probs=141.0
Q ss_pred cccCCCeEEecCCcEEEEEEeC----------CCccEEEE--ccceEEEEEEEEEEecCCCCCceEEEEEEeecC-----
Q 022696 39 TWAFDHIKYFNGGSEIQLVLDK----------YTGTGFQS--KGSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQN----- 101 (293)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ld~----------~tga~i~S--k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~----- 101 (293)
.+.++|+.+. +| .|.|+..+ +++|+|.| ++.++||+||||||+|.+ .|+||||||++.+
T Consensus 34 ~~~~~nv~v~-~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~~ 109 (235)
T cd08023 34 TYRPENAYVE-DG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYVG 109 (235)
T ss_pred eCCCCCeEEE-CC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCCC
Confidence 5577899885 56 48888754 24789999 899999999999999988 8999999999874
Q ss_pred -CCCCeEEE-EEcCCCCCCceEEEcccccCCCC----CcceeEeccC-CCCCCcEEEEEEEcCCeEEEEECCeEEEEEEe
Q 022696 102 -SEHDEIDF-EFLGNRTGQPYILQTNVYTGGKG----DKEQRIYLWF-DPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKN 174 (293)
Q Consensus 102 -~~~~EIDi-E~lG~~~g~p~~vqtN~~~~g~g----~re~~~~l~f-dp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~ 174 (293)
+..+|||| |++|+. +..+++++|..+.. ..+..+.+.. ++.++||+|+|+|+|++|+|||||++++++++
T Consensus 110 w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~~ 186 (235)
T cd08023 110 WPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYTN 186 (235)
T ss_pred CCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEcc
Confidence 34689999 999986 34677777765532 2344555554 68899999999999999999999999999987
Q ss_pred ccCCC-CCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEEEe
Q 022696 175 SKDLG-VRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVD 226 (293)
Q Consensus 175 ~~~~g-~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (293)
..... ..+|+++||+|+||+++|++|+ |. ...-...|..|.||+|||.
T Consensus 187 ~~~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 187 PNTDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEVDYVRVY 235 (235)
T ss_pred cccCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEEEEEEEC
Confidence 54321 2456799999999999999998 32 1234567999999999984
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=3.6e-30 Score=237.98 Aligned_cols=170 Identities=25% Similarity=0.291 Sum_probs=129.1
Q ss_pred CCCeEEecCCcEEEEEEeC-------------------CCccEEEEccceEEEEEEEEEEecC-CCCCceEEEEEEeecC
Q 022696 42 FDHIKYFNGGSEIQLVLDK-------------------YTGTGFQSKGSYLFGHFSMHIKMVP-GDSAGTVTAFYLSSQN 101 (293)
Q Consensus 42 ~~nv~~~~~G~~l~L~ld~-------------------~tga~i~Sk~~~~yG~~eariKlp~-g~s~G~v~AFwl~~~~ 101 (293)
.+|+++ .+|. |.|+..+ +++|+++||..|+|||||||||+++ + .|+||||||++..
T Consensus 43 ~~Nv~v-~dG~-L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI-SNGI-LELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE-eCCE-EEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 467877 4674 8888764 3678999999999999999999865 5 8999999999851
Q ss_pred ---------CCCCeEEE-EEcCCCC---CC----ceEEEcccccCCCCC--c--------ceeEeccCCCCCCcEEEEEE
Q 022696 102 ---------SEHDEIDF-EFLGNRT---GQ----PYILQTNVYTGGKGD--K--------EQRIYLWFDPTKEFHTYSVL 154 (293)
Q Consensus 102 ---------~~~~EIDi-E~lG~~~---g~----p~~vqtN~~~~g~g~--r--------e~~~~l~fdp~~dfHtY~i~ 154 (293)
|.++|||| |.+|... ++ ..++|++++.+|.+. + .+.+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 56899999 8887541 22 235777665554431 1 12456778999999999999
Q ss_pred EcCCeEEEEECCeEEEEEEeccCCCCCCCCCCCcEEEEEeecCC---------CccCCCCCcccCCCCCCEEEEEeEEEE
Q 022696 155 WNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNAD---------DWATRGGLEKTDWSKAPFIASYKGFHV 225 (293)
Q Consensus 155 Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg---------~Wat~GG~~~~d~~~~Pf~a~~~~~~v 225 (293)
|+|++|+|||||++++++.+ .+. .+||.+.+++-.+. .|+ |+ ..+.+..|-.|+||+|||
T Consensus 199 W~~~~i~~yvDg~~~~~~~~------~~w-~~~~~~~~~~~~~~p~~~~~~~~~~~--~~--~~~~~~fP~~m~VDyVRv 267 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPN------KYW-HRPMNVTLSLGLRKPFVKFFDNKNNA--KA--REKASDFPTSMYVDYVRV 267 (269)
T ss_pred EeCCEEEEEECCEEEEEEcC------Ccc-ccccEEeeccccCcchhhhhccccCC--CC--CCccCcCCceEEEEEEEE
Confidence 99999999999999999864 233 78888888875543 244 33 244567899999999998
Q ss_pred e
Q 022696 226 D 226 (293)
Q Consensus 226 ~ 226 (293)
.
T Consensus 268 ~ 268 (269)
T cd02177 268 W 268 (269)
T ss_pred e
Confidence 5
No 10
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.97 E-value=6e-30 Score=235.21 Aligned_cols=185 Identities=15% Similarity=0.130 Sum_probs=126.8
Q ss_pred cccCCCeEEecCCcEEEEEEeC-----CCccEEEEccce--EE----EEEEEEEEecCCC---CCceEEEEEEeecC---
Q 022696 39 TWAFDHIKYFNGGSEIQLVLDK-----YTGTGFQSKGSY--LF----GHFSMHIKMVPGD---SAGTVTAFYLSSQN--- 101 (293)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ld~-----~tga~i~Sk~~~--~y----G~~eariKlp~g~---s~G~v~AFwl~~~~--- 101 (293)
+++++|+.+..+| .|.|+..+ +++|+|.|+..+ .| |+||||||+|.+. ..|+||||||++.+
T Consensus 42 ~~~~~n~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 4456899886467 48888754 468899997654 33 4899999999741 37999999999863
Q ss_pred -----CCCCeEEE-EEcCCCCCCceEEEcccccCCCCCcceeEec-cCCCCCCcEEEEEEEcC-----CeEEEEECCeEE
Q 022696 102 -----SEHDEIDF-EFLGNRTGQPYILQTNVYTGGKGDKEQRIYL-WFDPTKEFHTYSVLWNM-----YQIVFLVDDVPI 169 (293)
Q Consensus 102 -----~~~~EIDi-E~lG~~~g~p~~vqtN~~~~g~g~re~~~~l-~fdp~~dfHtY~i~Wtp-----~~I~fyVDg~~v 169 (293)
|..+|||| |..|.......++|......+..+....... ...+.++||+|+|+|++ ++|+|||||+++
T Consensus 121 ~~~~WP~~GEIDImE~~~~~~~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~~~ 200 (259)
T cd02182 121 NGTNWPACGELDIMENVNGLSTGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDGVVY 200 (259)
T ss_pred CCCCCCccceeeeeeccCCCCceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECCEEE
Confidence 45689999 9998653222234433221111111111100 11245799999999997 999999999999
Q ss_pred EEEEeccCC---CCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEEEe
Q 022696 170 RVFKNSKDL---GVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHVD 226 (293)
Q Consensus 170 r~~~~~~~~---g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (293)
++++..... ..+.|+++||+||||+++||+|+. ......-...|..|.||+|||.
T Consensus 201 ~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~~--~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 201 HTVTGARVGDETTWQALAHHPLFIILNVAVGGNWPG--APNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred EEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcCC--CCCcccccCCCceEEEEEEEEe
Confidence 999764221 122345899999999999999983 2101112356899999999985
No 11
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.97 E-value=5.9e-30 Score=239.31 Aligned_cols=181 Identities=22% Similarity=0.218 Sum_probs=126.9
Q ss_pred cccCCCeEEecCCcEEEEEEeC-------CCccEEEE--ccceEEEEEEEEEEecCC-CCCceEEEEEEeecC-------
Q 022696 39 TWAFDHIKYFNGGSEIQLVLDK-------YTGTGFQS--KGSYLFGHFSMHIKMVPG-DSAGTVTAFYLSSQN------- 101 (293)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ld~-------~tga~i~S--k~~~~yG~~eariKlp~g-~s~G~v~AFwl~~~~------- 101 (293)
.+.++|+++. +|. |+|+..+ +++|+|.| |+.|+||+||||||||.+ ...|+||||||+++.
T Consensus 37 ~Y~~~nv~v~-~G~-L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~~ 114 (295)
T cd02180 37 WYDPDAVTTI-NGS-LRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYLA 114 (295)
T ss_pred EecCcCeEec-CCe-EEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccccc
Confidence 4556788774 674 8998864 47899999 788999999999999973 237999999999852
Q ss_pred ------CC------CCeEEE-EEcCCCC-CCce---EEEc----------------cccc------CC-CCCcce-eE--
Q 022696 102 ------SE------HDEIDF-EFLGNRT-GQPY---ILQT----------------NVYT------GG-KGDKEQ-RI-- 138 (293)
Q Consensus 102 ------~~------~~EIDi-E~lG~~~-g~p~---~vqt----------------N~~~------~g-~g~re~-~~-- 138 (293)
|. .+|||| |.+|.+. +... ++|. .+|. +. .++..+ ..
T Consensus 115 ~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 194 (295)
T cd02180 115 TTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAISC 194 (295)
T ss_pred cccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccccc
Confidence 22 389999 9998543 0101 1211 0111 00 011101 00
Q ss_pred --eccC----CCCCCcEEEEEEEcC-----CeEEEEECCeEEEEEEeccCC------CCCCCCCCCcEEEEEeecCCCcc
Q 022696 139 --YLWF----DPTKEFHTYSVLWNM-----YQIVFLVDDVPIRVFKNSKDL------GVRFPFNQPMKIYSSLWNADDWA 201 (293)
Q Consensus 139 --~l~f----dp~~dfHtY~i~Wtp-----~~I~fyVDg~~vr~~~~~~~~------g~~~P~~~Pm~l~lnlw~gg~Wa 201 (293)
.+.- ...++||+|+|+|+| ++|+|||||+++++++..+.. ...+| ++||+||||+++||+|+
T Consensus 195 ~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w~ 273 (295)
T cd02180 195 VTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNFQ 273 (295)
T ss_pred ccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEeccccC
Confidence 1111 125789999999999 899999999999999865321 12356 99999999999999997
Q ss_pred CCCCCcccCCCCCCEEEEEeEEEEe
Q 022696 202 TRGGLEKTDWSKAPFIASYKGFHVD 226 (293)
Q Consensus 202 t~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (293)
|. +.+-...|..|+||+|||.
T Consensus 274 ---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 274 ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred ---CC-CcccCCCCCEEEEEEEEEE
Confidence 31 3344567999999999985
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=6.9e-28 Score=228.94 Aligned_cols=139 Identities=22% Similarity=0.273 Sum_probs=104.4
Q ss_pred CCccEEEE--ccceEEEEEEEEEEecCCCCCceEEEEEEeecC------CCCCeEEE-EEcCCCCCCc-------eEEEc
Q 022696 61 YTGTGFQS--KGSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQN------SEHDEIDF-EFLGNRTGQP-------YILQT 124 (293)
Q Consensus 61 ~tga~i~S--k~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~------~~~~EIDi-E~lG~~~g~p-------~~vqt 124 (293)
.++|+|.| |+.|+|||||+|||||.| .|+||||||++.+ |..+|||| |..|+....+ ..++.
T Consensus 99 ~~Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~ 176 (330)
T cd08024 99 VMSARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGS 176 (330)
T ss_pred eEEEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEE
Confidence 35789999 688999999999999999 7999999999974 56899999 9999864221 12333
Q ss_pred ccc-cCCCC-C--c---ceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeEEEEEEecc-------------------CC
Q 022696 125 NVY-TGGKG-D--K---EQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSK-------------------DL 178 (293)
Q Consensus 125 N~~-~~g~g-~--r---e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~-------------------~~ 178 (293)
.+| ..... + + ........+.+++||+|+|+|+|++|+|||||+++++++... ..
T Consensus 177 tlH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~ 256 (330)
T cd08024 177 TLHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGG 256 (330)
T ss_pred EEEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCccccc
Confidence 333 22111 0 1 111112345678899999999999999999999999998521 11
Q ss_pred CCCCCCCCCcEEEEEeecCCCcc
Q 022696 179 GVRFPFNQPMKIYSSLWNADDWA 201 (293)
Q Consensus 179 g~~~P~~~Pm~l~lnlw~gg~Wa 201 (293)
+...||++|++|+||+++||.|.
T Consensus 257 ~~~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 257 GKMAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CcCCCCCCCEEEEEEEEecCCCC
Confidence 34579999999999999999885
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=4.2e-28 Score=229.50 Aligned_cols=135 Identities=15% Similarity=0.153 Sum_probs=100.6
Q ss_pred CccEEEEc--cceEEEEEEEEEEecCCCCCceEEEEEEeecC-------CCCCeEEE-EEcCCCCC----C---ceEEEc
Q 022696 62 TGTGFQSK--GSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQN-------SEHDEIDF-EFLGNRTG----Q---PYILQT 124 (293)
Q Consensus 62 tga~i~Sk--~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~-------~~~~EIDi-E~lG~~~g----~---p~~vqt 124 (293)
++|+|.|| +.|+|||+|+|||||.| .|+||||||++.+ |..+|||| |..||... . ..++|.
T Consensus 97 ~Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~ 174 (321)
T cd02179 97 VSARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYG 174 (321)
T ss_pred eeeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEc
Confidence 57899995 77999999999999999 7999999999874 45799999 99998621 1 023443
Q ss_pred ccccCCC-CCcc---eeEeccCCCCCCcEEEEEEEcCCeEEEEECCeEEEEEEeccC----------------CCCCCCC
Q 022696 125 NVYTGGK-GDKE---QRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKD----------------LGVRFPF 184 (293)
Q Consensus 125 N~~~~g~-g~re---~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~----------------~g~~~P~ 184 (293)
..+.... ..+. .......+.+++||+|+|+|+|++|+|||||++++++..... .....||
T Consensus 175 g~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPF 254 (321)
T cd02179 175 GPVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPF 254 (321)
T ss_pred ccccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCC
Confidence 3332111 1111 011112346789999999999999999999999999986321 1235699
Q ss_pred CCCcEEEEEeecCC
Q 022696 185 NQPMKIYSSLWNAD 198 (293)
Q Consensus 185 ~~Pm~l~lnlw~gg 198 (293)
++|++|+||+++||
T Consensus 255 D~~FyliLNlAVGG 268 (321)
T cd02179 255 DKEFYLSLGVGVGG 268 (321)
T ss_pred CCCeEEEEEEEecC
Confidence 99999999999987
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=3.4e-25 Score=211.76 Aligned_cols=156 Identities=26% Similarity=0.470 Sum_probs=131.7
Q ss_pred cccccCCCeEEecCCcEEEEEEeC-------CCccEEEEccc--eEEEEEEEEEEecCCCCCceEEEEEEeec---C-CC
Q 022696 37 VPTWAFDHIKYFNGGSEIQLVLDK-------YTGTGFQSKGS--YLFGHFSMHIKMVPGDSAGTVTAFYLSSQ---N-SE 103 (293)
Q Consensus 37 ~~~w~~~nv~~~~~G~~l~L~ld~-------~tga~i~Sk~~--~~yG~~eariKlp~g~s~G~v~AFwl~~~---~-~~ 103 (293)
+..|..+++.+..+| .|.|.+++ +++++++|..+ |+||++|+|||+|.+ .|+||||||++. + ..
T Consensus 73 ~~~w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~w 149 (355)
T COG2273 73 NLTWYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGW 149 (355)
T ss_pred ccceeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCC
Confidence 336777777776555 58888774 57899999777 999999999999977 999999999996 2 46
Q ss_pred CCeEEEEEcCCCCCCceEEEcccccCCCCCcceeEeccC-CCCCCcEEEEEEEcCCeEEEEECCeEEEEEEeccCCCCCC
Q 022696 104 HDEIDFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWF-DPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRF 182 (293)
Q Consensus 104 ~~EIDiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~f-dp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~ 182 (293)
++|||||++|+++. +..+|+|.+.++.++.+....+.+ +..++||+|.++|.++.|+|||||++++++... ...
T Consensus 150 p~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~~ 224 (355)
T COG2273 150 PDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DYI 224 (355)
T ss_pred CcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----ccC
Confidence 79999999997654 346999999998887777667777 888999999999999999999999999999753 245
Q ss_pred CCCCCcEEEEEeecCCCcc
Q 022696 183 PFNQPMKIYSSLWNADDWA 201 (293)
Q Consensus 183 P~~~Pm~l~lnlw~gg~Wa 201 (293)
| +.||++++|+|.++.+.
T Consensus 225 ~-~~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 225 P-QIPFYVLVNLWMGGYAG 242 (355)
T ss_pred c-CCcceeEEeecccCccC
Confidence 8 89999999999998765
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.83 E-value=2.1e-21 Score=136.41 Aligned_cols=50 Identities=54% Similarity=1.247 Sum_probs=41.5
Q ss_pred cccCCcccccccccCCCCHHHHHHHHHHhhcCeeeecccCCCCCCCC-CCCC
Q 022696 237 CETQGKRWWDQKAFQDLDAYQYRRLRWVRQKYTIYNYCNDRARFPTP-SPEC 287 (293)
Q Consensus 237 c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~-~~ec 287 (293)
|.++...||+++.++ |+.+|+++|+|||+||||||||+|++|||.+ |+||
T Consensus 1 C~~~~~~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 1 CSSSSKSWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp -TTTTTSGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CcCCCcccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 555567899998888 9999999999999999999999999999985 9999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.65 E-value=1.6e-15 Score=149.46 Aligned_cols=187 Identities=23% Similarity=0.317 Sum_probs=124.4
Q ss_pred CCeEEecCCcEEEEEEeC-------CCccEEEE--ccceEEEEEEEEEEecCC-CCCceEEEEEEeecC-----------
Q 022696 43 DHIKYFNGGSEIQLVLDK-------YTGTGFQS--KGSYLFGHFSMHIKMVPG-DSAGTVTAFYLSSQN----------- 101 (293)
Q Consensus 43 ~nv~~~~~G~~l~L~ld~-------~tga~i~S--k~~~~yG~~eariKlp~g-~s~G~v~AFwl~~~~----------- 101 (293)
+.|.. .+| .|+|++++ +.|+.++| |+=|+-|++|++++||.. +..|+|||||++++=
T Consensus 161 ~~vtt-~~G-~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast~g 238 (504)
T PF03935_consen 161 DAVTT-ENG-SLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGASTDG 238 (504)
T ss_pred CCcEe-eCC-EEEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccccCc
Confidence 34433 456 59999986 35788888 666777999999999854 468999999999750
Q ss_pred --------------C---------------------------------CCCeEEE-EEcCCCC---CC-ceEEEcccc--
Q 022696 102 --------------S---------------------------------EHDEIDF-EFLGNRT---GQ-PYILQTNVY-- 127 (293)
Q Consensus 102 --------------~---------------------------------~~~EIDi-E~lG~~~---g~-p~~vqtN~~-- 127 (293)
+ ...|||| |-..... |. ...+|..-|
T Consensus 239 ~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~d~ 318 (504)
T PF03935_consen 239 MWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPFDI 318 (504)
T ss_pred eecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeeccccc
Confidence 0 1359999 9765431 11 112332111
Q ss_pred ------------cCCC-------CCc-ceeE----ec---cC--CCCCCcEEEEEEEcCC-----eEEEEECCeEEEEEE
Q 022696 128 ------------TGGK-------GDK-EQRI----YL---WF--DPTKEFHTYSVLWNMY-----QIVFLVDDVPIRVFK 173 (293)
Q Consensus 128 ------------~~g~-------g~r-e~~~----~l---~f--dp~~dfHtY~i~Wtp~-----~I~fyVDg~~vr~~~ 173 (293)
.... |+. .|.+ .+ ++ ....+||+|++||.|. .|+|+|||+++.++.
T Consensus 319 ~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~ 398 (504)
T PF03935_consen 319 WYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTIN 398 (504)
T ss_pred CCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEE
Confidence 0000 011 1111 11 12 1237899999999864 999999999999997
Q ss_pred eccC------CCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCC--CCEEEEEeEEEEeeeeeCCCCCcccc
Q 022696 174 NSKD------LGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSK--APFIASYKGFHVDGCEVSVNAKFCET 239 (293)
Q Consensus 174 ~~~~------~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~--~Pf~a~~~~~~v~~c~~~~~~~~c~~ 239 (293)
.... ....+| ..||+|++|+....+|+ .+||.+ .|..|.||+|||..=.-.. .-.|.+
T Consensus 399 a~Al~~~~~I~~R~Ip-~EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVYQ~~~~~-~vgCDP 464 (504)
T PF03935_consen 399 AEALGPNPNIGQRPIP-EEPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVYQPEDAI-NVGCDP 464 (504)
T ss_pred hhhcCCCCCcCccccC-cCCceeeeccccccccC------ccccccccccceEEEeEEEEeccCCCC-eeeeCC
Confidence 6532 124689 99999999999999997 477765 5889999999997543221 245754
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.60 E-value=9.8e-15 Score=135.92 Aligned_cols=151 Identities=25% Similarity=0.357 Sum_probs=101.0
Q ss_pred CeEEecCCcEEEEEEeCC---------CccEEEEccceEEEEEEEEE-EecCCCCCceEEEEEEeecC-CCCCeEEE-EE
Q 022696 44 HIKYFNGGSEIQLVLDKY---------TGTGFQSKGSYLFGHFSMHI-KMVPGDSAGTVTAFYLSSQN-SEHDEIDF-EF 111 (293)
Q Consensus 44 nv~~~~~G~~l~L~ld~~---------tga~i~Sk~~~~yG~~eari-Klp~g~s~G~v~AFwl~~~~-~~~~EIDi-E~ 111 (293)
.+.+ .+| .|.|.+|+. ++++|.||..|.+|++|+|+ |||.+ .|+||||||++.+ |..+|||| |.
T Consensus 43 L~~v-~~g-~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~ 118 (293)
T cd02181 43 LAYV-NSG-NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEG 118 (293)
T ss_pred CeEe-eCC-eEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCCCCCCCcEEEEec
Confidence 3434 345 488888753 36899999999999999998 99998 8999999999886 88899999 99
Q ss_pred cCCCCCCceEEEccc----ccCC--CC-------------Cc--------ceeEeccCCCCCCcEEEEEEEcCCeEEEEE
Q 022696 112 LGNRTGQPYILQTNV----YTGG--KG-------------DK--------EQRIYLWFDPTKEFHTYSVLWNMYQIVFLV 164 (293)
Q Consensus 112 lG~~~g~p~~vqtN~----~~~g--~g-------------~r--------e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyV 164 (293)
++.......+|||.- -..+ .+ +. ...+-..|+ ..+=-.|++||+.+.|..+.
T Consensus 119 vn~~~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWf 197 (293)
T cd02181 119 VNLQTSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWF 197 (293)
T ss_pred cCCCCceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEE
Confidence 987544444777641 1110 00 00 011222232 23447999999999987554
Q ss_pred ---CCeEEEEEEeccCC----C---CCCCCC---------CCcEEEEEeecCCCcc
Q 022696 165 ---DDVPIRVFKNSKDL----G---VRFPFN---------QPMKIYSSLWNADDWA 201 (293)
Q Consensus 165 ---Dg~~vr~~~~~~~~----g---~~~P~~---------~Pm~l~lnlw~gg~Wa 201 (293)
+.+|-- ++....+ | ..|| . ++++|++|+-.=|+||
T Consensus 198 f~R~~iP~d-i~~~~pdPs~WG~P~A~f~-~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 198 FPRGSIPAD-ITSGSPDPSTWGTPAASFP-GSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred ecCCCCCcc-cccCCCCCcccCcccccCC-CCCCChhHhcccCEEEEEeecccccc
Confidence 233321 1111111 1 3355 3 7999999999999999
No 18
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=94.45 E-value=0.42 Score=42.26 Aligned_cols=92 Identities=22% Similarity=0.378 Sum_probs=55.4
Q ss_pred CCCccEEEEccc---eEEE-EEEEEEEecCCCCCceEEEEEEeecC--------CCCCeEEEEEcCCCCCCceEEEcccc
Q 022696 60 KYTGTGFQSKGS---YLFG-HFSMHIKMVPGDSAGTVTAFYLSSQN--------SEHDEIDFEFLGNRTGQPYILQTNVY 127 (293)
Q Consensus 60 ~~tga~i~Sk~~---~~yG-~~eariKlp~g~s~G~v~AFwl~~~~--------~~~~EIDiE~lG~~~g~p~~vqtN~~ 127 (293)
-..|+++.||.. -.+| +....+|+..| |..+-.+.-+.. +..+++=.|+.|.. .+..+.++.+
T Consensus 15 gw~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~~r~l~~lsvn~sG~LvA~L~g~s--s~~~~~~~~~ 89 (198)
T PF09264_consen 15 GWGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGSKRYLPILSVNESGSLVAELEGQS--SNTLLATTGA 89 (198)
T ss_dssp ETTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESSEEEEEEEEE-TTS-EEEEETTS---S-EEEE-CHH
T ss_pred ccccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCceEEEEEEEEcCCCCEEEEEecCC--CcEEEecccc
Confidence 377888888743 3467 78888888876 555555543321 23344433555432 1222222211
Q ss_pred cCCCCCcceeEeccCCCCCCcEEEEEEEcC--CeEEEEECCeEEEEE
Q 022696 128 TGGKGDKEQRIYLWFDPTKEFHTYSVLWNM--YQIVFLVDDVPIRVF 172 (293)
Q Consensus 128 ~~g~g~re~~~~l~fdp~~dfHtY~i~Wtp--~~I~fyVDg~~vr~~ 172 (293)
.-.+||.|.|...| ..-.|||||++|++.
T Consensus 90 ----------------di~gyH~Y~i~~~p~~~tASfy~DG~lI~tw 120 (198)
T PF09264_consen 90 ----------------DIHGYHKYEIVFSPLTNTASFYFDGTLIATW 120 (198)
T ss_dssp ----------------HHCSEEEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred ----------------cccceeEEEEEecCCCCceEEEECCEEEeec
Confidence 12479999999987 899999999999984
No 19
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=93.10 E-value=3 Score=33.26 Aligned_cols=67 Identities=10% Similarity=0.181 Sum_probs=39.4
Q ss_pred CCCCcEEEEEEEcCCeEEEEECCeEEEEEEeccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEE
Q 022696 144 PTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGF 223 (293)
Q Consensus 144 p~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 223 (293)
+...||..++.|....+.+||||+++.+...... ....+ ..++ -.|+.. ....+|...++.+
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~-~~~~~-~~~~------~iG~~~----------~~~~~~~g~i~~~ 144 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN-ISLNS-NGPL------FIGGSG----------GGSSPFNGYIDDL 144 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESS-SSTTS-CCEE------EESS-S----------TT--B-EEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCC-cCCCC-cceE------EEeecC----------CCCCceEEEEEEE
Confidence 3478999999999999999999998865432211 00011 1111 122221 2356899999999
Q ss_pred EEeee
Q 022696 224 HVDGC 228 (293)
Q Consensus 224 ~v~~c 228 (293)
+|...
T Consensus 145 ~i~~~ 149 (157)
T PF13385_consen 145 RIYNR 149 (157)
T ss_dssp EEESS
T ss_pred EEECc
Confidence 98554
No 20
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=90.89 E-value=7.7 Score=31.63 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=44.3
Q ss_pred CCCCcEEEEEEEcC--CeEEEEECCeEEEEEEeccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEe
Q 022696 144 PTKEFHTYSVLWNM--YQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 221 (293)
Q Consensus 144 p~~dfHtY~i~Wtp--~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~ 221 (293)
+...||...+.++. .+|..||||+++.+.... ..+...|+.+-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 34789999999988 799999999998654321 1121333332211111 11 12348999999
Q ss_pred EEEEeeeee
Q 022696 222 GFHVDGCEV 230 (293)
Q Consensus 222 ~~~v~~c~~ 230 (293)
.++|..++-
T Consensus 122 evriy~~aL 130 (133)
T smart00560 122 EVRVYNRAL 130 (133)
T ss_pred EEEEecccc
Confidence 999988754
No 21
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=90.08 E-value=6.3 Score=33.37 Aligned_cols=104 Identities=17% Similarity=0.241 Sum_probs=56.5
Q ss_pred CCccEEEEccceEEEEEEEEEEecCCCCCceEEEEEEeec--C-----CCCCeEEEEEcCCCCCCceEEEcccccCCCCC
Q 022696 61 YTGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQ--N-----SEHDEIDFEFLGNRTGQPYILQTNVYTGGKGD 133 (293)
Q Consensus 61 ~tga~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~--~-----~~~~EIDiE~lG~~~g~p~~vqtN~~~~g~g~ 133 (293)
..++-+.|+..|.=..+++++|+.++ | -+++++... . ...-|+.|.--+..... ....|.--
T Consensus 41 ~~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~~-------~~~~G~~~ 109 (185)
T PF06439_consen 41 SGGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTGL-------PNSTGSLY 109 (185)
T ss_dssp SSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCSTT-------TTSTTSBT
T ss_pred CCcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccCC-------CCccceEE
Confidence 34577888887777789999998543 2 344545443 1 23446666322111000 00011100
Q ss_pred -c---ceeEe-ccCCCCCCcEEEEEEEcCCeEEEEECCeEEEEEEec
Q 022696 134 -K---EQRIY-LWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFKNS 175 (293)
Q Consensus 134 -r---e~~~~-l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~ 175 (293)
. ..... ...-+..+||++.|.-..++|+.+|||++|-++...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 110 DEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp TTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred EeccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 0 00000 011245789999999999999999999999888753
No 22
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=85.12 E-value=18 Score=31.36 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=49.5
Q ss_pred EEEEEEEecCCCCCceEEEEEEeecCCCCCeEEEEEcCCCCCCceEEEcccccCCCCCcceeEecc-CC-CCCCcEEEEE
Q 022696 76 HFSMHIKMVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYLW-FD-PTKEFHTYSV 153 (293)
Q Consensus 76 ~~eariKlp~g~s~G~v~AFwl~~~~~~~~EIDiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~-fd-p~~dfHtY~i 153 (293)
.+.+.+|..+. +.|+.-++.-. +...++-++.-|.. + ++...+. +..+..+..... .+ ....||.-++
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~---~~~~~l~v~l~g~~---~-~~~~~~~--~~~g~~~~~~f~~~~l~dg~WH~lal 124 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA---QNVRQFGLEVDGRA---N-TLLLRYQ--GVDGKQHTVSFRNLPLADGQWHKLAL 124 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC---CCcEEEEEEEeCCc---c-EEEEEEC--CCCCcEEEEeecCCccccCCceEEEE
Confidence 46677776542 35555544432 23345555655532 1 2332222 222222222111 11 3467999999
Q ss_pred EEcCCeEEEEECCeEEEEEE
Q 022696 154 LWNMYQIVFLVDDVPIRVFK 173 (293)
Q Consensus 154 ~Wtp~~I~fyVDg~~vr~~~ 173 (293)
.+..+.+++|||++++.+..
T Consensus 125 ~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 125 SVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEeCCEEEEEECCcccccee
Confidence 99999999999999987754
No 23
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=82.50 E-value=18 Score=32.00 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=41.3
Q ss_pred CCCCcEEEEEEEc--CCeEEEEECCeEEEEEEeccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEe
Q 022696 144 PTKEFHTYSVLWN--MYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 221 (293)
Q Consensus 144 p~~dfHtY~i~Wt--p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~ 221 (293)
....||...+.|+ ..++.+||||+++.. ..-..+..++ ..-.+++.-- -+.+ ||. .+ ....|.-.++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~--~~~~~g~~i~--~~G~lvlGq~-qd~~---gg~--f~-~~~~f~G~i~ 156 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR--KGLAKGYTVK--PGGSIILGQE-QDSY---GGG--FD-ATQSFVGEIG 156 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc--ccccCCcEEC--CCCEEEEEec-ccCC---CCC--CC-CCcceeEEEe
Confidence 3568999999997 457999999998611 1111122222 2223333321 1122 332 33 2346888888
Q ss_pred EEEEee
Q 022696 222 GFHVDG 227 (293)
Q Consensus 222 ~~~v~~ 227 (293)
.|+|..
T Consensus 157 ~v~iw~ 162 (206)
T smart00159 157 DLNMWD 162 (206)
T ss_pred eeEEec
Confidence 888744
No 24
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=80.34 E-value=5.7 Score=36.40 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=46.8
Q ss_pred EEEEEEEecCCC-----CCceEEEEEEeecC----------------CCCCeEEE-EEcCCCCCCceEEEccccc-CCC-
Q 022696 76 HFSMHIKMVPGD-----SAGTVTAFYLSSQN----------------SEHDEIDF-EFLGNRTGQPYILQTNVYT-GGK- 131 (293)
Q Consensus 76 ~~eariKlp~g~-----s~G~v~AFwl~~~~----------------~~~~EIDi-E~lG~~~g~p~~vqtN~~~-~g~- 131 (293)
-|-.+.++|... ...=.||+||++.. ...+|+|| |.|.... . .+-+.+|. +|.
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g~--~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSGD--D-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCCC--c-eeEEEEecccCcc
Confidence 367777777621 23457999999862 25899999 9997643 2 33333333 332
Q ss_pred -----CCcceeEeccCCCCCCcEEEEEEEcCC
Q 022696 132 -----GDKEQRIYLWFDPTKEFHTYSVLWNMY 158 (293)
Q Consensus 132 -----g~re~~~~l~fdp~~dfHtY~i~Wtp~ 158 (293)
++....+. .|+...-++++.++.+
T Consensus 179 ~~~~g~G~~~yf~---RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDYFK---RPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCccc---CCCCCCeEEEEEEcCC
Confidence 11111111 2677888888888653
No 25
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=71.27 E-value=42 Score=29.54 Aligned_cols=55 Identities=7% Similarity=0.122 Sum_probs=35.9
Q ss_pred eccCCCCCCcEEEEEE--EcC---CeEEEEECCeEEEEEEeccCCCCCCCCCCCcEEEEEeecC
Q 022696 139 YLWFDPTKEFHTYSVL--WNM---YQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNA 197 (293)
Q Consensus 139 ~l~fdp~~dfHtY~i~--Wtp---~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~g 197 (293)
.+...+...||.+.|. |.+ ..|..++||+++....... -++.....++-+.|.-.
T Consensus 145 ~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~ 204 (224)
T PF14099_consen 145 DLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRS 204 (224)
T ss_dssp ECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEH
T ss_pred cCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECC
Confidence 3333344789998864 764 7899999999998877632 23323566777777643
No 26
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=69.14 E-value=79 Score=27.65 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=41.7
Q ss_pred CCCCcEEEEEEEc--CCeEEEEECCeEEEEEEeccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEe
Q 022696 144 PTKEFHTYSVLWN--MYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 221 (293)
Q Consensus 144 p~~dfHtY~i~Wt--p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~ 221 (293)
....||...+.|+ ..++.+||||+++.+-. -..+..++ . ...+++.- .-..-||. .+. ...|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~-~-~g~l~lG~----~q~~~gg~--~~~-~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVG-P-GGSIILGQ----EQDSYGGG--FDA-TQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEEC-C-CCeEEEee----cccCCCCC--CCC-CcceEEEEc
Confidence 4568999999998 45799999999875432 11122233 1 22233321 11111332 332 347888898
Q ss_pred EEEEee
Q 022696 222 GFHVDG 227 (293)
Q Consensus 222 ~~~v~~ 227 (293)
.|++..
T Consensus 157 ~v~iw~ 162 (201)
T cd00152 157 DVNMWD 162 (201)
T ss_pred eeEEEc
Confidence 888743
No 27
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=65.00 E-value=61 Score=24.87 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=47.6
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeEEEEEEeccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEE
Q 022696 145 TKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFH 224 (293)
Q Consensus 145 ~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~ 224 (293)
...||.-.|.-....++..||+............ ..-+...-.++.||.-.......... ...|.-.+++++
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~------~~~~~~~~~l~iGg~~~~~~~~~~~~--~~~f~Gci~~l~ 124 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSS------SDSLDPDGSLYIGGLPESNQPSGSVD--TPGFVGCIRDLR 124 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSSTT------HHCBESEEEEEESSTTTTCTCTTSST--TSB-EEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEeccccc------eecccCCCCEEEecccCccccccccC--CCCcEEEcCeEE
Confidence 4679999999999999999999988776542210 00233455577787654221110111 567888888888
Q ss_pred Eee
Q 022696 225 VDG 227 (293)
Q Consensus 225 v~~ 227 (293)
+.+
T Consensus 125 vng 127 (128)
T PF02210_consen 125 VNG 127 (128)
T ss_dssp ETT
T ss_pred ECC
Confidence 754
No 28
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=59.72 E-value=88 Score=24.93 Aligned_cols=85 Identities=19% Similarity=0.152 Sum_probs=46.9
Q ss_pred EEEEEEEEEEecCCCCCceEEEEEEeecCCCCCeEEEEEcCCCCCCceEEEcccccCCCCCcceeEeccC-CCCCCcEEE
Q 022696 73 LFGHFSMHIKMVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYLWF-DPTKEFHTY 151 (293)
Q Consensus 73 ~yG~~eariKlp~g~s~G~v~AFwl~~~~~~~~EIDiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~f-dp~~dfHtY 151 (293)
....+++++|.... .|+. |++.+. ...+.+-+|... |. ++..+-. | .....+.... =....||.-
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~---g~---l~~~~~~-g--~~~~~~~~~~~v~dg~Wh~v 85 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELED---GR---LVLRYDL-G--SGSLVLSSKTPLNDGQWHSV 85 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEEC---CE---EEEEEcC-C--cccEEEEccCccCCCCEEEE
Confidence 34467777776554 5654 333221 235556666663 22 2222211 1 1222222211 124579999
Q ss_pred EEEEcCCeEEEEECCeEEEE
Q 022696 152 SVLWNMYQIVFLVDDVPIRV 171 (293)
Q Consensus 152 ~i~Wtp~~I~fyVDg~~vr~ 171 (293)
.|.+....+..+|||.++.+
T Consensus 86 ~i~~~~~~~~l~VD~~~~~~ 105 (151)
T cd00110 86 SVERNGRSVTLSVDGERVVE 105 (151)
T ss_pred EEEECCCEEEEEECCccEEe
Confidence 99999999999999985433
No 29
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=56.74 E-value=38 Score=30.74 Aligned_cols=58 Identities=19% Similarity=0.405 Sum_probs=36.9
Q ss_pred CcEEEEEEEcCCeEEEEECCeEEEEEEeccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCC-CCEEEEEeEEEE
Q 022696 147 EFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSK-APFIASYKGFHV 225 (293)
Q Consensus 147 dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~-~Pf~a~~~~~~v 225 (293)
.++.-.|.-....|.|.|||.+|...+.... .-.|- -.+|+ |=..+ +|.+|.|+++.|
T Consensus 160 ~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPv-----------------l~~G~--IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 160 GPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPV-----------------LRGGR--IGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS--------------------SBE--EEEEEETT-EEEEEEEEE
T ss_pred CCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCc-----------------ccCcE--eeeeccchhhhhhccccC
Confidence 5666678889999999999999998875421 11230 01343 33333 699999999976
No 30
>smart00282 LamG Laminin G domain.
Probab=50.44 E-value=69 Score=25.42 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=23.0
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeEEEE
Q 022696 145 TKEFHTYSVLWNMYQIVFLVDDVPIRV 171 (293)
Q Consensus 145 ~~dfHtY~i~Wtp~~I~fyVDg~~vr~ 171 (293)
...||.-.|.-+...+..+|||.....
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~ 87 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVS 87 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCcccc
Confidence 357999999999999999999976543
No 31
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=47.89 E-value=2e+02 Score=25.54 Aligned_cols=135 Identities=13% Similarity=0.190 Sum_probs=67.4
Q ss_pred ceEEEEEEEEEEecCCCCCceEEEEEEeecCC----------CCCeEEEEEcCCCCCCceEEEcccccCCCCCcceeEec
Q 022696 71 SYLFGHFSMHIKMVPGDSAGTVTAFYLSSQNS----------EHDEIDFEFLGNRTGQPYILQTNVYTGGKGDKEQRIYL 140 (293)
Q Consensus 71 ~~~yG~~eariKlp~g~s~G~v~AFwl~~~~~----------~~~EIDiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l 140 (293)
...-|.+-++.|.... + -+-|++-.+++. ..+++=+|+.+.....-+...+..-..+ .+
T Consensus 31 ~L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~-----~~--- 99 (190)
T PF02973_consen 31 KLEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRG-----GY--- 99 (190)
T ss_dssp T-SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--S-----EE---
T ss_pred cccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEecc-----cc---
Confidence 3445667777775332 3 344555555430 1237888888876544344433311110 00
Q ss_pred cCCCCCCcEEEEEEEc--CCeEEEEECCeEEEEEEeccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEE
Q 022696 141 WFDPTKEFHTYSVLWN--MYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIA 218 (293)
Q Consensus 141 ~fdp~~dfHtY~i~Wt--p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a 218 (293)
+ ....||+=++.=+ ..+..+|+||+.+.++.... ..|-.+-|--=.+.| |+- .++| -...||.-
T Consensus 100 ~--~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n~~~i--G~t--~R~g-----~~~y~f~G 165 (190)
T PF02973_consen 100 K--NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLNSVQI--GGT--NRAG-----SNAYPFNG 165 (190)
T ss_dssp T--TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT--EEEE--SSE--EETT-----EEES--EE
T ss_pred c--CCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCceEEE--cce--EeCC-----Cceecccc
Confidence 0 1345788888776 67999999998888775432 223212121111111 221 1223 12459999
Q ss_pred EEeEEEEeeeee
Q 022696 219 SYKGFHVDGCEV 230 (293)
Q Consensus 219 ~~~~~~v~~c~~ 230 (293)
.+++++|..++-
T Consensus 166 ~I~~l~iYn~aL 177 (190)
T PF02973_consen 166 TIDNLKIYNRAL 177 (190)
T ss_dssp EEEEEEEESS--
T ss_pred eEEEEEEEcCcC
Confidence 999999987653
No 32
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=39.16 E-value=1.8e+02 Score=24.36 Aligned_cols=70 Identities=16% Similarity=0.330 Sum_probs=40.0
Q ss_pred cCCCeEEecCCcEEEEEEeCCCccEEEEccceEEEEEEEEEEecCCCCCceEEEEEEeecC--------CCCCeEEE--E
Q 022696 41 AFDHIKYFNGGSEIQLVLDKYTGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAFYLSSQN--------SEHDEIDF--E 110 (293)
Q Consensus 41 ~~~nv~~~~~G~~l~L~ld~~tga~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~~~~--------~~~~EIDi--E 110 (293)
..+++.+...|..+.+..|...|++ +++|=+++ ++|. +-+-..+.+ ...|.|.| |
T Consensus 33 ~qs~~qv~g~G~V~~vLpdd~~Gsr--------HQ~Fiv~l--~~g~-----tllIahNIDlaprip~l~~GD~V~f~Ge 97 (131)
T PF11948_consen 33 QQSDVQVSGCGTVVKVLPDDNKGSR--------HQRFIVRL--SSGQ-----TLLIAHNIDLAPRIPWLQKGDQVEFYGE 97 (131)
T ss_pred hccCeeEeccEEEEEECcccCCCCc--------ceEEEEEe--CCCC-----EEEEEeccCccccCcCcCCCCEEEEEEE
Confidence 3456777777887888777778876 44555444 4441 222223222 24677777 7
Q ss_pred EcCCCCCCceEEEcccc
Q 022696 111 FLGNRTGQPYILQTNVY 127 (293)
Q Consensus 111 ~lG~~~g~p~~vqtN~~ 127 (293)
+.-|..|. .+|-..+
T Consensus 98 Ye~n~kgg--vIHWTH~ 112 (131)
T PF11948_consen 98 YEWNPKGG--VIHWTHH 112 (131)
T ss_pred EEECCCCC--EEEeecc
Confidence 76665553 5664443
No 33
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=37.03 E-value=1.2e+02 Score=24.43 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=33.3
Q ss_pred ccccCCCCCcceeEe-ccCCCCCCcEEEEEEEcCCeEEEEECCeEEEEEE
Q 022696 125 NVYTGGKGDKEQRIY-LWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVFK 173 (293)
Q Consensus 125 N~~~~g~g~re~~~~-l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~ 173 (293)
|.+.+|.-++|++.. .+|.+.+. ..-.|.=+++....+|||+++..+.
T Consensus 56 Ns~~~g~Wg~Eer~~~~pf~~g~~-F~l~i~~~~~~f~i~vng~~~~~F~ 104 (127)
T cd00070 56 NSFLNGNWGPEERSGGFPFQPGQP-FELTILVEEDKFQIFVNGQHFFSFP 104 (127)
T ss_pred cCCCCCEecHhhccCCCCCCCCCe-EEEEEEEcCCEEEEEECCEeEEEec
Confidence 334444445666554 45554444 4888888999999999999987775
No 34
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=30.34 E-value=3.7e+02 Score=23.51 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=36.7
Q ss_pred CCCCcEEEEEEEcC--CeEEEEECCeEEEEEEeccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEe
Q 022696 144 PTKEFHTYSVLWNM--YQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 221 (293)
Q Consensus 144 p~~dfHtY~i~Wtp--~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~a~~~ 221 (293)
....||.+-+-|+. ..+.+|+||+....-. -..|...| ... .++|.- +=..-||. .| ..-.|.-.+.
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~~~g~~i~-~gG-~~vlGQ----eQd~~gG~--fd-~~q~F~G~i~ 150 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--LATGHSIP-GGG-TLVLGQ----EQDSYGGG--FD-ESQAFVGEIS 150 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--SSTT--B--SSE-EEEESS-----BSBTTBT--CS-GGGB--EEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEeccccc--ccCCceEC-CCC-EEEECc----cccccCCC--cC-CccEeeEEEe
Confidence 35789999999965 7899999999543321 12233344 222 222221 11122442 33 3348888888
Q ss_pred EEEE
Q 022696 222 GFHV 225 (293)
Q Consensus 222 ~~~v 225 (293)
+|++
T Consensus 151 ~~~i 154 (195)
T PF00354_consen 151 DFNI 154 (195)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 8877
No 35
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=29.17 E-value=69 Score=33.91 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=36.9
Q ss_pred CCCcEEEEEEEcCCeEEEEECCeEEEEEEeccCCCCCCCCCCCcEEEEEeecCCCcc
Q 022696 145 TKEFHTYSVLWNMYQIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSLWNADDWA 201 (293)
Q Consensus 145 ~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wa 201 (293)
..+||.|.+.-+=-.++.||||+-..-..-. .+|| -.|.++-.-|=+|-=|.
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwp-lHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWP-LHPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec----cCCc-cCcccccceeEEeeecc
Confidence 3789999999975559999999865332211 3577 56666666666777787
No 36
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=28.45 E-value=1.4e+02 Score=22.19 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=32.8
Q ss_pred ccCCCeEEecCCcEEEEEEeCCCccEEEEccceEEEEEEEEEEecCCCCCceEEEE
Q 022696 40 WAFDHIKYFNGGSEIQLVLDKYTGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAF 95 (293)
Q Consensus 40 w~~~nv~~~~~G~~l~L~ld~~tga~i~Sk~~~~yG~~eariKlp~g~s~G~v~AF 95 (293)
+.++.+.+.-+++.|.|+..+..... ...+.+|.|+=+++||..-...-+.|-
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~vd~~~i~A~ 70 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEGVDPDSVTSS 70 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCCCChHHeEEE
Confidence 34555555555667888876543211 345678999999999976333444443
No 37
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=24.45 E-value=1.2e+02 Score=23.33 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=30.2
Q ss_pred CCCeEEecCCcEEEEEEeCCCccEEEEccceEEEEEEEEEEecCCCCCceEEE
Q 022696 42 FDHIKYFNGGSEIQLVLDKYTGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTA 94 (293)
Q Consensus 42 ~~nv~~~~~G~~l~L~ld~~tga~i~Sk~~~~yG~~eariKlp~g~s~G~v~A 94 (293)
++.|.+.-.++.|+|+..+..-..-.....+.||.|+=++.||.+-...-+.|
T Consensus 21 kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A 73 (87)
T cd06482 21 PDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTY 73 (87)
T ss_pred HHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEE
Confidence 44444444455688887653211100123579999999999997532333443
No 38
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.50 E-value=47 Score=26.15 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=3.6
Q ss_pred HHHhhhhcc
Q 022696 13 LFLASGVIS 21 (293)
Q Consensus 13 ~~~~~~~~~ 21 (293)
+||+++.++
T Consensus 16 lLlisSeva 24 (95)
T PF07172_consen 16 LLLISSEVA 24 (95)
T ss_pred HHHHHhhhh
Confidence 344444333
No 39
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=22.13 E-value=60 Score=29.71 Aligned_cols=23 Identities=22% Similarity=0.754 Sum_probs=13.6
Q ss_pred CcccccccccCCCCHHHHHHHHHH
Q 022696 241 GKRWWDQKAFQDLDAYQYRRLRWV 264 (293)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~~~~~ 264 (293)
+.+|||+..|-+- ..-.++++|+
T Consensus 205 PSYWWN~ekYLGP-AvLmqAyRWi 227 (288)
T KOG3049|consen 205 PSYWWNSEKYLGP-AVLMQAYRWI 227 (288)
T ss_pred cccccCcccccCH-HHHHHHHhhh
Confidence 3589999877542 2334455554
No 40
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=21.99 E-value=1.3e+02 Score=23.95 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=23.1
Q ss_pred CCCCcEEEEEEEcCCeEEEEECCeEEEEE
Q 022696 144 PTKEFHTYSVLWNMYQIVFLVDDVPIRVF 172 (293)
Q Consensus 144 p~~dfHtY~i~Wtp~~I~fyVDg~~vr~~ 172 (293)
+.++-|++.+. ..+.++++|||+++-..
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~ 84 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDN 84 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEEC
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcC
Confidence 46778888888 88899999999999544
No 41
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=21.25 E-value=1.5e+02 Score=22.39 Aligned_cols=46 Identities=7% Similarity=0.081 Sum_probs=30.1
Q ss_pred ccCCCeEEecCCcEEEEEEeCCCccE----EEEccceEEEEEEEEEEecCC
Q 022696 40 WAFDHIKYFNGGSEIQLVLDKYTGTG----FQSKGSYLFGHFSMHIKMVPG 86 (293)
Q Consensus 40 w~~~nv~~~~~G~~l~L~ld~~tga~----i~Sk~~~~yG~~eariKlp~g 86 (293)
..++++.+.-+|+.|.|+-.+..... +. ...+.+|.|+-++.||.+
T Consensus 22 ~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~-~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 22 FSEDDLEIEVENNQLTVTGKKADEENEEREYL-HRGIAKRAFERSFNLADH 71 (90)
T ss_pred CCHHHeEEEEECCEEEEEEEEcccccCCCcEE-EEEEeceEEEEEEECCCC
Confidence 34556666656667888876533221 11 235678999999999975
No 42
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=21.19 E-value=1.1e+02 Score=23.02 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=20.9
Q ss_pred eEEEEECCeEEEEEEeccCCCCCCCCCCCcEEEEEe
Q 022696 159 QIVFLVDDVPIRVFKNSKDLGVRFPFNQPMKIYSSL 194 (293)
Q Consensus 159 ~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnl 194 (293)
.+.|||||+++.+..... ...|+...|-.-.+.+
T Consensus 44 ~~~W~vdg~~~g~~~~~~--~~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGH--QLFWQPDRPGEHTLTV 77 (89)
T ss_pred cEEEEECCEEcccCCCCC--eEEeCCCCCeeEEEEE
Confidence 788999999996544322 1234424666666665
No 43
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=21.14 E-value=1.3e+02 Score=25.97 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=28.9
Q ss_pred cceeEeccCCCCCCcEEEEEEEcCCeEEEEECCeEEEEE
Q 022696 134 KEQRIYLWFDPTKEFHTYSVLWNMYQIVFLVDDVPIRVF 172 (293)
Q Consensus 134 re~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDg~~vr~~ 172 (293)
+..++.+|. .+.|=|.|+|.-..+.+..|++|..+++-
T Consensus 91 ~~k~~~~W~-~t~dg~~~RivL~kdtm~~w~NG~~l~Ta 128 (187)
T KOG4352|consen 91 MTKQYRLWL-YTDDGQEYRIVLKKDTMSLWVNGDELRTA 128 (187)
T ss_pred hhhheeEEE-EecCCceEEEEEeccceeeEEcCcccccc
Confidence 344566653 23445999999999999999999988764
No 44
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.41 E-value=6.5e+02 Score=22.82 Aligned_cols=56 Identities=16% Similarity=0.320 Sum_probs=40.5
Q ss_pred EEEEEEeCCCccEEEEccceEEEEEEEEEEecCCCCCceEEEEEEe-ecC--C-CCCeEEEEEcC
Q 022696 53 EIQLVLDKYTGTGFQSKGSYLFGHFSMHIKMVPGDSAGTVTAFYLS-SQN--S-EHDEIDFEFLG 113 (293)
Q Consensus 53 ~l~L~ld~~tga~i~Sk~~~~yG~~eariKlp~g~s~G~v~AFwl~-~~~--~-~~~EIDiE~lG 113 (293)
.+.+.+....|..+.++....-|+|...+.- .|+.-+-+.. ..+ | ...+||++|--
T Consensus 61 ~~~~~Vts~~G~~~~~~env~~gqFaFta~e-----~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~ 120 (210)
T KOG1691|consen 61 KLSVKVTSPYGNNLHSKENVTKGQFAFTAEE-----SGMYEACFTADVPGHKPETKRSIDLDWKT 120 (210)
T ss_pred eEEEEEEcCCCceeehhhccccceEEEEecc-----CCcEEEEEecccCCCCCCcceEEEEEeec
Confidence 5888888888999999999999998877763 3555555444 221 3 34889999864
Done!