BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>022697
MRLKLVGTVLQNSEREVFRLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPA
SNQEELSDCKTLSDVLMRLEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNF
HSSSKLRPGLQNTVAADKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIH
ARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAM
DKRLALLLPPVSRPYRHFFPTVTSSAQLISSTNEQSSDVVNAYHIGCFSEDAQ

High Scoring Gene Products

Symbol, full name Information P value
AT3G09180 protein from Arabidopsis thaliana 9.9e-71

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  022697
        (293 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2083534 - symbol:AT3G09180 "AT3G09180" species...   716  9.9e-71   1


>TAIR|locus:2083534 [details] [associations]
            symbol:AT3G09180 "AT3G09180" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016592 "mediator complex" evidence=IDA]
            [GO:0046482 "para-aminobenzoic acid metabolic process"
            evidence=RCA] EMBL:CP002686 GO:GO:0006355 GO:GO:0006351
            EMBL:AC011436 GO:GO:0016592 EMBL:AC009326 EMBL:AY093000
            EMBL:BT020371 EMBL:AY084863 IPI:IPI00518902 IPI:IPI00521655
            RefSeq:NP_566345.1 UniGene:At.40147 IntAct:Q8RWM3 PRIDE:Q8RWM3
            EnsemblPlants:AT3G09180.1 GeneID:820074 KEGG:ath:AT3G09180
            TAIR:At3g09180 eggNOG:NOG242468 HOGENOM:HOG000077597
            InParanoid:Q8RWM3 KO:K15170 OMA:FFSPDEG PhylomeDB:Q8RWM3
            ProtClustDB:CLSN2688197 Genevestigator:Q8RWM3 InterPro:IPR021627
            Pfam:PF11571 Uniprot:Q8RWM3
        Length = 402

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 150/273 (54%), Positives = 185/273 (67%)

Query:    19 RLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMR 78
             RLALKAFTDQK+RFFPH+DD +     EP SKKH     L  + +EE  D KTL D+  R
Sbjct:   147 RLALKAFTDQKRRFFPHIDDGL---KMEPSSKKHRASHLLLENGREEPVDYKTLPDIQSR 203

Query:    79 LEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADK 138
             LEK VP++K+ TY RL+WLKRA+SLP S ++ P E  K   F SSSKLR GLQ  V  DK
Sbjct:   204 LEKLVPSVKVSTYGRLNWLKRANSLPGSGSDDPTEASKPI-FQSSSKLRSGLQTEVV-DK 261

Query:   139 VSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAG 198
             ++VIEL FPS+FRAIVSL P G+++PDAVAFFSPDEGG+Y+HARG SVYHV++HITEHA 
Sbjct:   262 IAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFSPDEGGSYLHARGFSVYHVYKHITEHAA 321

Query:   199 TALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGXXXXXXXXXXXXXPPVSRPYRHF 258
             TALQ+FLG  T T+LY LL WICS++++FSK C+KCG             PP+ R Y+  
Sbjct:   322 TALQYFLGFGTGTALYSLLLWICSFESVFSKPCTKCGRLLAMDKKSALILPPLHRAYQ-- 379

Query:   259 FPTVTSSAQLISSTNEQSSDVVNAYHIGCFSED 291
                     +L  + N    DV  AYH  C  +D
Sbjct:   380 --------ELPLALN---LDVCEAYHSSCSQDD 401


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      293       280   0.00082  115 3  11 22  0.48    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  203 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.40u 0.13s 26.53t   Elapsed:  00:00:01
  Total cpu time:  26.40u 0.13s 26.53t   Elapsed:  00:00:01
  Start:  Mon May 20 15:46:26 2013   End:  Mon May 20 15:46:27 2013

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