BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022697
         (293 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J4O|A Chain A, Structure Of Tab1
          Length = 401

 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 11  QNSEREVFRLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQ-ALPASNQEELSDC 69
           +++E +V R+ L+AF   ++ F   +DD + ++++        VPQ  LP   Q+ L   
Sbjct: 96  EHAEADVRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERL 155

Query: 70  KTL 72
           KTL
Sbjct: 156 KTL 158


>pdb|2POM|A Chain A, Tab1 With Manganese Ion
          Length = 372

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 11  QNSEREVFRLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQ-ALPASNQEELSDC 69
           +++E +V R+ L+AF   ++ F   +DD + ++++        VPQ  LP   Q+ L   
Sbjct: 98  EHAEADVRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERL 157

Query: 70  KTL 72
           KTL
Sbjct: 158 KTL 160


>pdb|3HI7|A Chain A, Crystal Structure Of Human Diamine Oxidase
 pdb|3HI7|B Chain B, Crystal Structure Of Human Diamine Oxidase
 pdb|3HIG|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
           The Inhibitor Berenil
 pdb|3HIG|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
           The Inhibitor Berenil
 pdb|3HII|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
           The Inhibitor Pentamidine
 pdb|3HII|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
           The Inhibitor Pentamidine
 pdb|3K5T|A Chain A, Crystal Structure Of Human Diamine Oxidase In Space Group
           C2221
 pdb|3MPH|A Chain A, The Structure Of Human Diamine Oxidase Complexed With An
           Inhibitor Aminoguanidine
 pdb|3MPH|B Chain B, The Structure Of Human Diamine Oxidase Complexed With An
           Inhibitor Aminoguanidine
          Length = 731

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 10/73 (13%)

Query: 113 ELLKEHNFHSSSK---LRPGLQNTVAADKVSVIELLFPSIFRAIVSL-----HPVGTIEP 164
           EL   H+F  S K   L+P    T+A + V +IE+L P  +  +  L     HPV   E 
Sbjct: 20  ELKAVHSFLWSKKELRLQPSSTTTMAKNTVFLIEMLLPKKYHVLRFLDKGERHPV--REA 77

Query: 165 DAVAFFSPDEGGN 177
            AV FF   E  N
Sbjct: 78  RAVIFFGDQEHPN 90


>pdb|2HPU|A Chain A, Solution Nmr Structure Of The Apo-Nosl Protein From
           Achromobacter Cycloclastes
 pdb|2HQ3|A Chain A, Solution Nmr Structure Of The Apo-Nosl Protein From
           Achromobacter Cycloclastes
          Length = 175

 Score = 28.5 bits (62), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%)

Query: 127 RPGLQNTVAADKVSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSV 186
           +PG  N +AADK           F  + S    G   P+AV F S DE   ++ A G  V
Sbjct: 85  QPGDGNWIAADKA----------FYVVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGGQV 134


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,874,836
Number of Sequences: 62578
Number of extensions: 292955
Number of successful extensions: 603
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 4
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)