BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022697
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RWM3|MED27_ARATH Mediator of RNA polymerase II transcription subunit 27
OS=Arabidopsis thaliana GN=MED27 PE=1 SV=1
Length = 402
Score = 307 bits (786), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 158/273 (57%), Positives = 195/273 (71%), Gaps = 18/273 (6%)
Query: 19 RLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLSDVLMR 78
RLALKAFTDQK+RFFPH+DD + EP SKKH L + +EE D KTL D+ R
Sbjct: 147 RLALKAFTDQKRRFFPHIDDGL---KMEPSSKKHRASHLLLENGREEPVDYKTLPDIQSR 203
Query: 79 LEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNTVAADK 138
LEK VP++K+ TY RL+WLKRA+SLP S ++ P E K F SSSKLR GLQ V DK
Sbjct: 204 LEKLVPSVKVSTYGRLNWLKRANSLPGSGSDDPTEASKP-IFQSSSKLRSGLQTEVV-DK 261
Query: 139 VSVIELLFPSIFRAIVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAG 198
++VIEL FPS+FRAIVSL P G+++PDAVAFFSPDEGG+Y+HARG SVYHV++HITEHA
Sbjct: 262 IAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFSPDEGGSYLHARGFSVYHVYKHITEHAA 321
Query: 199 TALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHF 258
TALQ+FLG T T+LY LL WICS++++FSK C+KCGRLLAMDK+ AL+LPP+ R Y+
Sbjct: 322 TALQYFLGFGTGTALYSLLLWICSFESVFSKPCTKCGRLLAMDKKSALILPPLHRAYQEL 381
Query: 259 FPTVTSSAQLISSTNEQSSDVVNAYHIGCFSED 291
+ + DV AYH C +D
Sbjct: 382 PLAL-------------NLDVCEAYHSSCSQDD 401
>sp|Q55BX7|MED27_DICDI Putative mediator of RNA polymerase II transcription subunit 27
OS=Dictyostelium discoideum GN=med27 PE=3 SV=1
Length = 450
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 165 DAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTALQFFLGIRTETS-LYFLLHWICSY 223
D ++FF E N+ SS Y++F+ I+E++ A+ ++ S L +L WI S+
Sbjct: 322 DRISFFGVKE--NFDSLWASSKYNIFKKISENSFEAISYYSANPNGGSILKCILSWIWSF 379
Query: 224 QTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHFFP 260
+ LF + C C +L +D + LPP R + ++ P
Sbjct: 380 RGLFLEECKGCQDILHLDSPQYMYLPPSFRTFDNYTP 416
>sp|Q7QCJ9|MED27_ANOGA Mediator of RNA polymerase II transcription subunit 27 OS=Anopheles
gambiae GN=MED27 PE=3 SV=3
Length = 295
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 98 KRASSLPSSANESP--LELLKEHNFHSSSKL---RPGLQNTVAADKVSVIELLFPSIFRA 152
KR SLPSS +P +E L +++ L RP + N +++ + + RA
Sbjct: 134 KRRRSLPSSHLATPQMVENLIGSIHYNNMNLKIARPFMTN-------AILHITIARVLRA 186
Query: 153 IVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTA-LQFFLGIRTET 211
V L + IE V + S + VFR + +HA +A L FF E
Sbjct: 187 AVILKGL-LIEWVTVKGYEESLLDGVDEQWTESRHQVFRKVQDHAHSAMLHFFSPTLPEL 245
Query: 212 SLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHFFP 260
++ + W SY TLF+ C KCG K L LPP R R P
Sbjct: 246 AIRSFITWFRSYVTLFADPCKKCG------KHLHNTLPPTWRDLRTLEP 288
>sp|Q171Y8|MED27_AEDAE Mediator of RNA polymerase II transcription subunit 27 OS=Aedes
aegypti GN=MED27 PE=3 SV=1
Length = 295
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 98 KRASSLPSSANESPL---ELLKEHNFHSSS--KLRPGLQNTVAADKVSVIELLFPSIFRA 152
KR SLPSS +P L+ +F + + +RP + N +++ + + RA
Sbjct: 134 KRRRSLPSSHLATPQTVDNLIGSIHFPNMNLKIVRPFMTN-------AILHITIARVLRA 186
Query: 153 IVSLHPVGTIEPDAVAFFSPDEGGNYIHARGSSVYHVFRHITEHAGTA-LQFFLGIRTET 211
V L + IE V F S + VFR + +HA +A L FF +
Sbjct: 187 AVILKGL-LIEWVTVKGFDESLLDGVDEHWTVSRHQVFRKVQDHAHSAMLHFFSPTLPDL 245
Query: 212 SLYFLLHWICSYQTLFSKVCSKCGRLLAMDKRLALLLPPVSRPYRHFFP 260
++ + W SY TLF+ C KCG K L LPP R R P
Sbjct: 246 AIRSFITWFRSYLTLFADPCKKCG------KHLHNTLPPTWRDLRTLEP 288
>sp|Q9DB40|MED27_MOUSE Mediator of RNA polymerase II transcription subunit 27 OS=Mus
musculus GN=Med27 PE=2 SV=2
Length = 311
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 185 SVYHVFRHITEHAGTAL-QFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKR 243
S Y VF+ +T+HA TAL + L + + + W+ SY LF C +CG+ L
Sbjct: 234 SSYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKFLQDG-- 291
Query: 244 LALLLPPVSRPYR 256
LPP R +R
Sbjct: 292 ----LPPTWRDFR 300
>sp|Q5R6U8|MED27_PONAB Mediator of RNA polymerase II transcription subunit 27 OS=Pongo
abelii GN=MED27 PE=2 SV=1
Length = 311
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 185 SVYHVFRHITEHAGTAL-QFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKR 243
S Y VF+ +T+HA TAL + L + + + W+ SY LF C +CG+ L
Sbjct: 234 SNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKFLQDG-- 291
Query: 244 LALLLPPVSRPYR 256
LPP R +R
Sbjct: 292 ----LPPTWRDFR 300
>sp|Q6P2C8|MED27_HUMAN Mediator of RNA polymerase II transcription subunit 27 OS=Homo
sapiens GN=MED27 PE=1 SV=1
Length = 311
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 185 SVYHVFRHITEHAGTAL-QFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKR 243
S Y VF+ +T+HA TAL + L + + + W+ SY LF C +CG+ L
Sbjct: 234 SNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKFLQDG-- 291
Query: 244 LALLLPPVSRPYR 256
LPP R +R
Sbjct: 292 ----LPPTWRDFR 300
>sp|Q642Q3|MD27A_XENLA Mediator of RNA polymerase II transcription subunit 27-A OS=Xenopus
laevis GN=med27-a PE=2 SV=1
Length = 311
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 185 SVYHVFRHITEHAGTAL-QFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKR 243
S Y VF+ +T+HA TAL + L + + + W+ SY LF C +CG+ L
Sbjct: 234 SNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKFLQDG-- 291
Query: 244 LALLLPPVSRPYR 256
LPP R +R
Sbjct: 292 ----LPPTWRDFR 300
>sp|Q5XHA1|MED27_XENTR Mediator of RNA polymerase II transcription subunit 27 OS=Xenopus
tropicalis GN=med27 PE=2 SV=1
Length = 311
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 185 SVYHVFRHITEHAGTAL-QFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKR 243
S Y VF+ +T+HA TAL + L + + + W+ SY LF C +CG+ L
Sbjct: 234 SNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKFLQDG-- 291
Query: 244 LALLLPPVSRPYR 256
LPP R +R
Sbjct: 292 ----LPPTWRDFR 300
>sp|Q6Q7J5|MED27_PIG Mediator of RNA polymerase II transcription subunit 27 OS=Sus
scrofa GN=MED27 PE=2 SV=1
Length = 311
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 185 SVYHVFRHITEHAGTAL-QFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKR 243
S Y VF+ +T+HA TAL + L + + + W+ SY LF C +CG+ L
Sbjct: 234 SNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKFLQDG-- 291
Query: 244 LALLLPPVSRPYR 256
LPP R +R
Sbjct: 292 ----LPPTWRDFR 300
>sp|Q2TBN7|MED27_BOVIN Mediator of RNA polymerase II transcription subunit 27 OS=Bos
taurus GN=MED27 PE=2 SV=1
Length = 311
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 185 SVYHVFRHITEHAGTAL-QFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKR 243
S Y VF+ +T+HA TAL + L + + + W+ SY LF C +CG+ L
Sbjct: 234 SNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKFLQDG-- 291
Query: 244 LALLLPPVSRPYR 256
LPP R +R
Sbjct: 292 ----LPPTWRDFR 300
>sp|Q3B8G8|MD27B_XENLA Mediator of RNA polymerase II transcription subunit 27-B OS=Xenopus
laevis GN=med27-b PE=2 SV=1
Length = 311
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 185 SVYHVFRHITEHAGTAL-QFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKR 243
S Y VF+ +T+HA TAL + L + + + W+ SY LF C +CG+ L
Sbjct: 234 SNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKFLQDG-- 291
Query: 244 LALLLPPVSRPYR 256
LPP R +R
Sbjct: 292 ----LPPTWRDFR 300
>sp|Q6PFL0|MED27_DANRE Mediator of RNA polymerase II transcription subunit 27 OS=Danio
rerio GN=med27 PE=2 SV=1
Length = 311
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 185 SVYHVFRHITEHAGTAL-QFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKR 243
S Y F+ +T+HA TAL + L + + + W+ SY LF C +CG+ L
Sbjct: 234 SNYQAFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQTPCQRCGKYLQEG-- 291
Query: 244 LALLLPPVSRPYR 256
LPP R +R
Sbjct: 292 ----LPPTWRDFR 300
>sp|Q9VNG0|MED27_DROME Mediator of RNA polymerase II transcription subunit 27
OS=Drosophila melanogaster GN=MED27 PE=1 SV=1
Length = 293
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 183 GSSVYHVFRHITEHAGTA-LQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMD 241
S Y VFR + +HA +A L FF + ++ + W+ S+ LF + C +CG+ +
Sbjct: 213 AESRYEVFRKVQDHAHSAMLHFFSPTLPDLAVKSYITWLNSHVKLFLEPCKRCGKFVVNG 272
Query: 242 KRLALLLPPVSRPYRHFFP 260
LPP R R P
Sbjct: 273 ------LPPTWRDLRTLEP 285
>sp|Q7M7U7|RL25_WOLSU 50S ribosomal protein L25 OS=Wolinella succinogenes (strain ATCC
29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)
GN=rplY PE=3 SV=1
Length = 178
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 50 KKHCVPQALPASNQEELSDCKTLSDVLMRLEKEVPNLKIFTYE 92
K C P+ LPAS + ++SD +L+R E+PN+K+ E
Sbjct: 125 KVKCSPENLPASYELDVSDLDVGDAILVRDLPELPNVKVIEKE 167
>sp|O74630|ATM_SCHPO Serine/threonine-protein kinase tel1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tel1 PE=1 SV=1
Length = 2812
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 14 EREVFRLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTLS 73
ER +F L +A++ RF P+ D + QSTE C P N DC +L
Sbjct: 641 ERNLFHLK-EAWSPVTLRF-PYTTDEICKQSTEG-----CYP-----FNSNHTIDCDSLQ 688
Query: 74 DVLMRLEKEVPNLKIFTYERLDWLKRASSLPSSANESPLELLKEHNFHSSSKLRPGLQNT 133
+V+ LE + + +Y++ + K S + S + L F + + G+ N
Sbjct: 689 NVIKMLESSIDEISSASYDKDELDKETPSFEAVMIFSQISFL--CGFLNCFIQKKGIHN- 745
Query: 134 VAADKVSVIELLFPSIFRAIVSLH---PVGTIEPDAVAFFSPDEGGNYIHARGSSV 186
V + + + + LFP + + S H P+ + F DE + + GS +
Sbjct: 746 VTPNNLVIFKNLFPEVLSFVKSNHSYDPIINCISTNLQFTISDEPKHLRYEIGSDL 801
>sp|Q75AA0|PAN1_ASHGO Actin cytoskeleton-regulatory complex protein PAN1 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAN1 PE=3 SV=2
Length = 1248
Score = 31.6 bits (70), Expect = 7.9, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 13 SEREVFRLALKAFTDQKKRFFPHLDDRVHDQSTEPESKKHCVPQALPASNQEELSDCKTL 72
SER L K + + H+D +H + P K VP + A S TL
Sbjct: 588 SERSQLSLRQKDQQIKDEETMRHVDSLMHQIRSLPMKKHAAVPSDMKARFDSLTSSISTL 647
Query: 73 SDVLMRLEKEVPNLKIFTYERLDWLKRASSLPSSA 107
+ + ++ E+ N K+ Y LK SS+ S
Sbjct: 648 FNNIAEIDDEITNAKVHLYR----LKNPSSIVGSG 678
>sp|Q3Z6S3|SYE_DEHE1 Glutamate--tRNA ligase OS=Dehalococcoides ethenogenes (strain 195)
GN=gltX PE=3 SV=1
Length = 484
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 79 LEKEVPNLKIFTYERLDWLK----RASSLPSSANESPLELLKEH--------NFHSSSKL 126
LEK IF YE+LDW+ R S P A+ + L K+ NF ++K+
Sbjct: 297 LEKVSKTAAIFNYEKLDWMNGMYIRTLSAPDLASRAIPFLEKDERIAASGRLNFDYTTKV 356
Query: 127 RPGLQNTVAADKVSVIELLFPSIFRAIVSLHPVGTIE 163
P +Q V K+S + L I+ +S P I+
Sbjct: 357 MPLIQERVK--KLSELAELCWFIYSDNISYDPASLID 391
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,903,508
Number of Sequences: 539616
Number of extensions: 4132214
Number of successful extensions: 10984
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 10960
Number of HSP's gapped (non-prelim): 28
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)