Query 022697
Match_columns 293
No_of_seqs 49 out of 51
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 09:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e0h_A Mitochondrial FAD-linke 77.1 1.9 6.4E-05 33.6 3.3 51 181-240 6-56 (106)
2 3gwl_A P14, FAD-linked sulfhyd 60.3 4.9 0.00017 31.5 2.5 58 177-243 2-59 (106)
3 1x6a_A LIMK-2, LIM domain kina 54.2 2 6.8E-05 30.4 -0.7 18 222-239 9-26 (81)
4 3gwn_A Probable FAD-linked sul 50.0 13 0.00045 29.3 3.4 51 182-241 9-59 (114)
5 2cuq_A Four and A half LIM dom 49.8 1.9 6.6E-05 30.4 -1.3 17 223-239 10-26 (80)
6 4e0i_A Mitochondrial FAD-linke 49.0 12 0.0004 32.5 3.2 51 181-240 89-139 (189)
7 2l3k_A Rhombotin-2, linker, LI 46.0 3 0.0001 32.2 -0.9 17 223-239 1-19 (123)
8 3u5s_A FAD-linked sulfhydryl o 45.5 16 0.00055 29.4 3.3 54 181-243 22-75 (126)
9 2ehe_A Four and A half LIM dom 40.0 5 0.00017 28.4 -0.4 17 223-239 10-26 (82)
10 2cup_A Skeletal muscle LIM-pro 39.4 4.3 0.00015 29.7 -0.9 18 222-239 60-77 (101)
11 3td7_A FAD-linked sulfhydryl o 38.0 20 0.00069 33.6 3.1 57 175-240 36-92 (295)
12 1jr8_A ERV2 protein, mitochond 36.2 30 0.001 27.5 3.5 27 212-243 37-63 (117)
13 1v6g_A Actin binding LIM prote 30.0 6.2 0.00021 27.9 -1.3 18 222-239 9-26 (81)
14 1wyh_A SLIM 2, skeletal muscle 25.6 8.5 0.00029 26.3 -1.2 15 225-239 2-16 (72)
15 3u5c_Z RP45, S31, YS23, 40S ri 25.4 27 0.00094 28.3 1.6 18 74-91 45-62 (108)
16 2jtn_A LIM domain-binding prot 24.4 13 0.00043 30.4 -0.6 17 223-239 114-130 (182)
17 3f6q_B LIM and senescent cell 23.6 6 0.00021 26.7 -2.3 18 222-239 5-22 (72)
18 2rgt_A Fusion of LIM/homeobox 23.5 12 0.00041 30.2 -0.9 17 223-239 60-76 (169)
19 3ps0_A Crispr-associated prote 23.4 57 0.0019 30.7 3.5 27 12-38 220-254 (328)
20 1wig_A KIAA1808 protein; LIM d 22.1 13 0.00046 26.0 -0.8 15 225-239 2-16 (73)
21 2d8z_A Four and A half LIM dom 21.3 10 0.00035 25.9 -1.5 15 225-239 2-16 (70)
No 1
>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}
Probab=77.12 E-value=1.9 Score=33.58 Aligned_cols=51 Identities=10% Similarity=0.302 Sum_probs=34.5
Q ss_pred CCcCcchhhHHhhHHhHHHHhhcccCCCchhHHHHHHHHHHHhhhhchHhhhHHHHhhhc
Q 022697 181 ARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAM 240 (293)
Q Consensus 181 ~ws~Sry~VFRKITEHA~~AL~~F~s~~PetaLrsFLtWL~SYr~LFs~PCkkCgklL~~ 240 (293)
-||++-..+|--|+. .|-..-++..-..+..+|.++..+| ||..|+++...
T Consensus 6 ~lGp~~W~~lHtia~-------~yP~~pt~~~k~~~~~fi~~l~~~l--PC~~C~~hf~~ 56 (106)
T 4e0h_A 6 QLGRSSWTLLHSVAA-------SYPAQPTDQQKGEMKQFLNIFSHIY--PCNWCAKDFEK 56 (106)
T ss_dssp HHHHHHHHHHHHHHH-------TSCSSCCHHHHHHHHHHHHHHHHHC--SSHHHHHHHHH
T ss_pred HccHHHHHHHHHHHh-------hCCCCCCHHHHHHHHHHHHHHhhhC--ChHHHHHHHHH
Confidence 466666666665543 3333333456667777888888777 99999999975
No 2
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}
Probab=60.26 E-value=4.9 Score=31.53 Aligned_cols=58 Identities=14% Similarity=0.269 Sum_probs=37.6
Q ss_pred ccccCCcCcchhhHHhhHHhHHHHhhcccCCCchhHHHHHHHHHHHhhhhchHhhhHHHHhhhcccc
Q 022697 177 NYIHARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKR 243 (293)
Q Consensus 177 ~yl~~ws~Sry~VFRKITEHA~~AL~~F~s~~PetaLrsFLtWL~SYr~LFs~PCkkCgklL~~Ds~ 243 (293)
+-+..||.|-..+|=-++- +|-...++..-....++|..|-.+ =||.-|.++....-.
T Consensus 2 ~~~~~~Gra~W~llHt~aa-------~yP~~Pt~~~~~~~~~~i~~f~~~--yPC~~Ca~hf~~~~~ 59 (106)
T 3gwl_A 2 SHMLHWGPKYWRSLHLYAI-------FFSDAPSWKEKYEAIQWILNFIES--LPCTRCQHHAFSYLT 59 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHH-------HSCSSCCHHHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHH
T ss_pred chHhHhhHHHHHHHHHHHh-------hCCCCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
Confidence 3345566666666655544 443333344555777888888887 699999999876433
No 3
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.19 E-value=2 Score=30.43 Aligned_cols=18 Identities=28% Similarity=0.711 Sum_probs=15.7
Q ss_pred HhhhhchHhhhHHHHhhh
Q 022697 222 SYQTLFSKVCSKCGRLLA 239 (293)
Q Consensus 222 SYr~LFs~PCkkCgklL~ 239 (293)
-|..+|...|.+|++.+.
T Consensus 9 ~y~~~~~~~C~~C~~~I~ 26 (81)
T 1x6a_A 9 DYWGKFGEFCHGCSLLMT 26 (81)
T ss_dssp CSSCCSSCBCTTTCCBCC
T ss_pred HHhhhcCCcCccCCCCcC
Confidence 378899999999999877
No 4
>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus}
Probab=50.02 E-value=13 Score=29.35 Aligned_cols=51 Identities=12% Similarity=0.069 Sum_probs=30.2
Q ss_pred CcCcchhhHHhhHHhHHHHhhcccCCCchhHHHHHHHHHHHhhhhchHhhhHHHHhhhcc
Q 022697 182 RGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMD 241 (293)
Q Consensus 182 ws~Sry~VFRKITEHA~~AL~~F~s~~PetaLrsFLtWL~SYr~LFs~PCkkCgklL~~D 241 (293)
||.|-..+|=-++- +|-...+......+..+|.++..+| ||.-|.++....
T Consensus 9 ~Grs~W~llHt~aa-------~~p~~pt~~~~~~~~~fi~~~~~~y--PC~~Ca~hf~~~ 59 (114)
T 3gwn_A 9 WGTAGWTFNHAVTF-------GYPLNPTSDDKRRYKNYFISLGDVL--PCRLCRESYKKF 59 (114)
T ss_dssp HHHHHHHHHHHHHH-------TSCSSCCHHHHHHHHHHHHHHHHHC--SSHHHHHHHHHH
T ss_pred hcHHHHHHHHHHHH-------hCCCCCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 55555555544443 3322333344555666666666655 899999999863
No 5
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.76 E-value=1.9 Score=30.35 Aligned_cols=17 Identities=29% Similarity=0.913 Sum_probs=14.9
Q ss_pred hhhhchHhhhHHHHhhh
Q 022697 223 YQTLFSKVCSKCGRLLA 239 (293)
Q Consensus 223 Yr~LFs~PCkkCgklL~ 239 (293)
|..+|...|.+|++.+.
T Consensus 10 y~~~~~~~C~~C~~~I~ 26 (80)
T 2cuq_A 10 YENKFAPRCARCSKTLT 26 (80)
T ss_dssp CCCCSSCCCTTTCCCCC
T ss_pred HccccCCcCCCCCCEec
Confidence 67889999999999875
No 6
>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}
Probab=49.00 E-value=12 Score=32.49 Aligned_cols=51 Identities=8% Similarity=0.228 Sum_probs=35.5
Q ss_pred CCcCcchhhHHhhHHhHHHHhhcccCCCchhHHHHHHHHHHHhhhhchHhhhHHHHhhhc
Q 022697 181 ARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAM 240 (293)
Q Consensus 181 ~ws~Sry~VFRKITEHA~~AL~~F~s~~PetaLrsFLtWL~SYr~LFs~PCkkCgklL~~ 240 (293)
.||++-..+|--|+. .|-..-++..-..+..+|.++..+| ||..|++++..
T Consensus 89 elGp~~W~~LHTiA~-------~YP~~Pt~~~k~~~~~Fi~~l~~~l--PC~~C~~hf~~ 139 (189)
T 4e0i_A 89 QLGRSSWTLLHSVAA-------SYPAQPTDQQKGEMKQFLNIFSHIY--PCNWSAKDFEK 139 (189)
T ss_dssp HHHHHHHHHHHHHHH-------HSCSSCCHHHHHHHHHHHHHHHHHC--SCHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHh-------cCCCCCCHHHHHHHHHHHHHHHHHC--CcHHHHHHHHH
Confidence 466666666655543 3433444466677788888888777 99999999976
No 7
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=46.03 E-value=3 Score=32.23 Aligned_cols=17 Identities=29% Similarity=0.935 Sum_probs=15.1
Q ss_pred hhhhchH--hhhHHHHhhh
Q 022697 223 YQTLFSK--VCSKCGRLLA 239 (293)
Q Consensus 223 Yr~LFs~--PCkkCgklL~ 239 (293)
|..+|.. .|.+|++.+.
T Consensus 1 Y~r~fg~~~~C~~C~~~I~ 19 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIR 19 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCC
T ss_pred ChhhhCCCCcccCCCCeec
Confidence 7789988 9999999886
No 8
>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*
Probab=45.52 E-value=16 Score=29.42 Aligned_cols=54 Identities=9% Similarity=0.213 Sum_probs=33.8
Q ss_pred CCcCcchhhHHhhHHhHHHHhhcccCCCchhHHHHHHHHHHHhhhhchHhhhHHHHhhhcccc
Q 022697 181 ARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAMDKR 243 (293)
Q Consensus 181 ~ws~Sry~VFRKITEHA~~AL~~F~s~~PetaLrsFLtWL~SYr~LFs~PCkkCgklL~~Ds~ 243 (293)
-||+|-..+|--|+. .|-..-++..-..+..+|.++..++ ||..|+.+...--.
T Consensus 22 elG~atW~~LHtia~-------~yP~~Pt~~~k~~~~~fi~~l~~~l--PC~~C~~hf~~~l~ 75 (126)
T 3u5s_A 22 ELGRHSWAVLHTLAA-------YYPDLPTPEQQQDMAQFIHLFSKFY--PXEEXAEDLRKRLA 75 (126)
T ss_dssp HHHHHHHHHHHHHHH-------TSCSSCCHHHHHHHHHHHHHHHHHC--SSHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHh-------hCCCCCCHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHH
Confidence 356666666555543 3333333455566677777777764 99999999876333
No 9
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.03 E-value=5 Score=28.37 Aligned_cols=17 Identities=29% Similarity=0.978 Sum_probs=15.3
Q ss_pred hhhhchHhhhHHHHhhh
Q 022697 223 YQTLFSKVCSKCGRLLA 239 (293)
Q Consensus 223 Yr~LFs~PCkkCgklL~ 239 (293)
|..+|...|.+|++.+.
T Consensus 10 y~~~~~~~C~~C~~~I~ 26 (82)
T 2ehe_A 10 YDNTFANTCAECQQLIG 26 (82)
T ss_dssp CCCCCSCBCTTTCCBCC
T ss_pred hCcccCCcCccCCCccc
Confidence 77899999999999887
No 10
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=39.43 E-value=4.3 Score=29.67 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=14.5
Q ss_pred HhhhhchHhhhHHHHhhh
Q 022697 222 SYQTLFSKVCSKCGRLLA 239 (293)
Q Consensus 222 SYr~LFs~PCkkCgklL~ 239 (293)
-|.++|...|.+|++.+.
T Consensus 60 cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 60 CTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp HHTTCCCCBCSSSCCBCC
T ss_pred HhhhhcCCccccCCCccc
Confidence 356788899999998775
No 11
>3td7_A FAD-linked sulfhydryl oxidase R596; four helix-bundle, orfan domain, oxidoreductase; HET: FAD; 2.21A {Acanthamoeba polyphaga mimivirus}
Probab=37.97 E-value=20 Score=33.59 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=40.4
Q ss_pred CCccccCCcCcchhhHHhhHHhHHHHhhcccCCCchhHHHHHHHHHHHhhhhchHhhhHHHHhhhc
Q 022697 175 GGNYIHARGSSVYHVFRHITEHAGTALQFFLGIRTETSLYFLLHWICSYQTLFSKVCSKCGRLLAM 240 (293)
Q Consensus 175 ~g~yl~~ws~Sry~VFRKITEHA~~AL~~F~s~~PetaLrsFLtWL~SYr~LFs~PCkkCgklL~~ 240 (293)
+|-....||++-..++--|+. .|-..-++..-..+..+|.++..++ ||..|+.+...
T Consensus 36 dGM~TkVWGPstW~fLHTIAa-------~YPenPT~~dKk~y~~FI~nL~~vL--PC~~Cr~HF~k 92 (295)
T 3td7_A 36 NGLITKIWGTAGWTFNHAVTF-------GYPLNPTSDDKRRYKNYFISLGDVL--PCRLCRESYKK 92 (295)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH-------TSCSSCCHHHHHHHHHHHHHHHHHS--SSHHHHHHHHH
T ss_pred CCCccCcCcHHHHHHHHHHHh-------hCCCCCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 344447799999999877765 3433333455566677777777766 99999999875
No 12
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Probab=36.24 E-value=30 Score=27.52 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhhchHhhhHHHHhhhcccc
Q 022697 212 SLYFLLHWICSYQTLFSKVCSKCGRLLAMDKR 243 (293)
Q Consensus 212 aLrsFLtWL~SYr~LFs~PCkkCgklL~~Ds~ 243 (293)
.++.|+.+ +..+| ||..|.+++.....
T Consensus 37 ~l~~f~~~---~~~fy--pC~~Ca~hF~~~~~ 63 (117)
T 1jr8_A 37 KLHTFIGL---YAELY--PCGECSYHFVKLIE 63 (117)
T ss_dssp HHHHHHHH---HHHHC--SSHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHC--CCHHHHHHHHHHHH
Confidence 44444444 44455 79999999976433
No 13
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.03 E-value=6.2 Score=27.92 Aligned_cols=18 Identities=28% Similarity=0.835 Sum_probs=15.9
Q ss_pred HhhhhchHhhhHHHHhhh
Q 022697 222 SYQTLFSKVCSKCGRLLA 239 (293)
Q Consensus 222 SYr~LFs~PCkkCgklL~ 239 (293)
-|..+|...|.+|++.+.
T Consensus 9 dy~~~~~~~C~~C~~~I~ 26 (81)
T 1v6g_A 9 DYQRLYGTRCFSCDQFIE 26 (81)
T ss_dssp CGGGSCCCBCTTTCCBCC
T ss_pred HHHhHhCCcCccccCEec
Confidence 388999999999999776
No 14
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.57 E-value=8.5 Score=26.34 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.8
Q ss_pred hhchHhhhHHHHhhh
Q 022697 225 TLFSKVCSKCGRLLA 239 (293)
Q Consensus 225 ~LFs~PCkkCgklL~ 239 (293)
.+|...|.+|++.+.
T Consensus 2 ~~~~~~C~~C~~~I~ 16 (72)
T 1wyh_A 2 SSGSSGCSACGETVM 16 (72)
T ss_dssp CCCCCBCSSSCCBCC
T ss_pred CccCCCCccCCCccc
Confidence 478899999999876
No 15
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=25.43 E-value=27 Score=28.34 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.4
Q ss_pred HHHHHHhhhCCCceeeee
Q 022697 74 DVLMRLEKEVPNLKIFTY 91 (293)
Q Consensus 74 ~vl~~le~~~pn~ki~ty 91 (293)
+.+..|.+|||++|+.|-
T Consensus 45 ~t~dkl~KEVpk~KlITp 62 (108)
T 3u5c_Z 45 EKYDRILKEVPTYRYVSV 62 (108)
T ss_dssp HHHHHHHHHCSSCSSBSH
T ss_pred HHHHHHHHHccCCeEEeH
Confidence 567889999999999884
No 16
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=24.35 E-value=13 Score=30.38 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=13.8
Q ss_pred hhhhchHhhhHHHHhhh
Q 022697 223 YQTLFSKVCSKCGRLLA 239 (293)
Q Consensus 223 Yr~LFs~PCkkCgklL~ 239 (293)
|..+|...|..|++.+.
T Consensus 114 y~~~f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 114 FFKRFGTKCAACQLGIP 130 (182)
T ss_dssp HHHTTSCCCTTTCCCCC
T ss_pred cccccccccccCCCccC
Confidence 45688899999998765
No 17
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=23.60 E-value=6 Score=26.73 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.9
Q ss_pred HhhhhchHhhhHHHHhhh
Q 022697 222 SYQTLFSKVCSKCGRLLA 239 (293)
Q Consensus 222 SYr~LFs~PCkkCgklL~ 239 (293)
+|+.++...|.+|++.+.
T Consensus 5 yy~~~~~~~C~~C~~~i~ 22 (72)
T 3f6q_B 5 YFQGSASATCERCKGGFA 22 (72)
T ss_dssp ECCCCTTCBCTTTCCBCC
T ss_pred cccCcCCccchhcCcccc
Confidence 478899999999999886
No 18
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.46 E-value=12 Score=30.17 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=13.7
Q ss_pred hhhhchHhhhHHHHhhh
Q 022697 223 YQTLFSKVCSKCGRLLA 239 (293)
Q Consensus 223 Yr~LFs~PCkkCgklL~ 239 (293)
|..+|...|.+|++.+.
T Consensus 60 y~~~f~~~C~~C~~~I~ 76 (169)
T 2rgt_A 60 FFKRFGTKCAACQLGIP 76 (169)
T ss_dssp HHHHHSCBCTTTCCBCC
T ss_pred ccccccccccccccccC
Confidence 55688899999998664
No 19
>3ps0_A Crispr-associated protein, CSA2; viral resistance, CAS, CASS, RNA- RNA-recognition motif, nucleic-acid binding; 2.00A {Sulfolobus solfataricus}
Probab=23.43 E-value=57 Score=30.66 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=15.2
Q ss_pred cchhhhhHHHHhh--------hcccccccCCCCcc
Q 022697 12 NSEREVFRLALKA--------FTDQKKRFFPHLDD 38 (293)
Q Consensus 12 ~~~~d~trlalka--------ftdqkrrffphldd 38 (293)
.--+.|.+.||+| |.-.+-||+||++.
T Consensus 220 ~eR~~RvkaaL~Al~~l~~g~~GAkrsr~lP~~~~ 254 (328)
T 3ps0_A 220 RQKAKRVKSAIKALYSLLSGNFGGKRSRFLPSMKL 254 (328)
T ss_dssp HHHHHHHHHHHHTHHHHHCC--------CCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCCcccc
Confidence 3345677888887 34567899999886
No 20
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.08 E-value=13 Score=26.03 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=12.5
Q ss_pred hhchHhhhHHHHhhh
Q 022697 225 TLFSKVCSKCGRLLA 239 (293)
Q Consensus 225 ~LFs~PCkkCgklL~ 239 (293)
.+|...|.+|++.+.
T Consensus 2 s~~~~~C~~C~~~I~ 16 (73)
T 1wig_A 2 SSGSSGCDSCEKYIT 16 (73)
T ss_dssp CCSCCSCSSSCCCCS
T ss_pred CcCcCCcccCCCEec
Confidence 478889999998775
No 21
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.27 E-value=10 Score=25.88 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=12.4
Q ss_pred hhchHhhhHHHHhhh
Q 022697 225 TLFSKVCSKCGRLLA 239 (293)
Q Consensus 225 ~LFs~PCkkCgklL~ 239 (293)
.+|...|.+|++.+.
T Consensus 2 ~~~~~~C~~C~~~I~ 16 (70)
T 2d8z_A 2 SSGSSGCVQCKKPIT 16 (70)
T ss_dssp CCCCCBCSSSCCBCC
T ss_pred CCCCCCCcccCCeec
Confidence 468889999998775
Done!